Citrus Sinensis ID: 025336

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Secondary Structure (PSIPRED)
cccccccEEEccEEEEcccccccccccEEEcccEEEEcccccccccEEEEccccccccHHEEEEcccccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccccHHHHHHccccEEEcccccccccHHHHHHHHcccccccEEEEccccHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHccccEEEEEEcccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccEEEccEEcEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHcccEEEcHHHccHHHHHEEEEEccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEEcccccEEccccEEEEcccEEEEccHHHccHHHHHHHHHHHHHcccccHHHHccEEEEHHHHHHHHHHHHccccccEEEEc
Coil and Loop (DISEMBL)
mldgtsrmsvrgqKLYHIFScstwseymvidanyvvrvdpsidlshasflscgfttgfGAAWKEAEVEKGSSVAVLGLGtvglgavdgaRMQGAAKIIgidknpwkkekgeafgmtdfinpddepnkSISELVKGIThgmgvdycfectgvpslLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACggrtlkgttfggiktksdlpilldkcknkEFKLHQLLTHHVKLEEIDKAIQLlkqpdcvkvliti
Flexible Loop (DISEMBL)
mldgtsrmsvrgqKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAkiigidknpwkKEKGEAFGMtdfinpddepNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGgrtlkgttfggiktksdlPILLDKCKNKEFKLHQLLTHHVKLEEIDKaiqllkqpdCVKVLITI
Low Complexity Region (SEG)
MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKgssvavlglgtvglgavdgaRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTkvgkgkvivigvgvDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Disordered region (IsUnstruct)
************QKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI*********ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI**
Disordered Region (DISOPRED)
**DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Disordered Region (DISEMBL)
**********RGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Disordered Region (DISPRO)
****TSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q0V7W6	389	Alcohol dehydrogenase-lik	yes	no	0.940	0.614	0.475	1e-56
Q9SK87	386	Alcohol dehydrogenase-lik	no	no	0.968	0.637	0.448	7e-56
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.940	0.615	0.450	4e-54
Q9FH04	390	Alcohol dehydrogenase-lik	no	no	0.980	0.638	0.424	1e-53
Q8LEB2	381	Alcohol dehydrogenase-lik	no	no	0.976	0.650	0.416	1e-51
A1L4Y2	394	Alcohol dehydrogenase-lik	no	no	0.956	0.616	0.429	1e-50
Q96533	379	Alcohol dehydrogenase cla	no	no	0.968	0.649	0.410	2e-50
P80572	378	Alcohol dehydrogenase cla	N/A	no	0.976	0.656	0.403	9e-49
A2XAZ3	381	Alcohol dehydrogenase cla	N/A	no	0.968	0.645	0.398	2e-48
Q0DWH1	381	Alcohol dehydrogenase cla	no	no	0.968	0.645	0.398	2e-48

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/242 (47%), Positives = 160/242 (66%), Gaps = 3/242 (1%)

Query: 12  GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGS 71
           G+ +YH    S++SEY V+D  ++V++ P I +  A+ LSCG +TG GAAWK A VEKGS
Sbjct: 146 GEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTGIGAAWKVANVEKGS 205

Query: 72  SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISE 131
           +VAV GLG VGL   +GAR++GA KIIG+D NP K E G+ FG TDFIN        ISE
Sbjct: 206 TVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTDFINSTLCGENKISE 265

Query: 132 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIAL-ACG 190
           ++K +T G GVDY FEC G+PSLL+EA  +T+ G GK +V+G+    + P+++ +     
Sbjct: 266 VIKEMTGG-GVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGID-KHLTPVSLGSFDLLR 323

Query: 191 GRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKV 250
           GR + G+ FGG+K K D+PIL+D    KE  L   +TH +K EEI+KA  LL Q   ++ 
Sbjct: 324 GRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLLVQGKSLRC 383

Query: 251 LI 252
           ++
Sbjct: 384 IL 385

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  217 bits (552), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 112/250 (44%), Positives = 167/250 (66%), Gaps = 4/250 (1%)

Query: 5   TSRM-SVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWK 63
           TSR    RG+ ++H    S+++EY V+D  ++V++ P I +  A+ LSC   TG GAAWK
Sbjct: 135 TSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVATGLGAAWK 194

Query: 64  EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDD 123
            A+VE+GS+V + GLG VGL   +G R++GAAKIIG+D NP K E G+ FG+TDF+NP  
Sbjct: 195 VADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGITDFVNPAL 254

Query: 124 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLN 183
              K+ISE+++ +T  +G DY FEC G+ SL+ EA ++T+ G GK IV+G+    + P++
Sbjct: 255 CGEKTISEVIREMTD-VGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKAL-PIS 312

Query: 184 VIAL-ACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL 242
           + +     GRT+ GT FGG+K K D+PIL+D+   KE  L  L+TH +  EEI+KA  LL
Sbjct: 313 LGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEINKAFHLL 372

Query: 243 KQPDCVKVLI 252
            + + ++ +I
Sbjct: 373 AEGNSIRCII 382

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  211 bits (537), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/242 (45%), Positives = 161/242 (66%), Gaps = 3/242 (1%)

Query: 12  GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGS 71
           G+ ++H    S++SEY V+D  ++V++ P I +  A+ LSCG +TG GAAWK A VE+GS
Sbjct: 145 GEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTGIGAAWKVANVEEGS 204

Query: 72  SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISE 131
           ++A+ GLG VGL   +GAR++GAAKIIGID N  K E G+ FG TDFINP     K ISE
Sbjct: 205 TIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINPTLCGEKKISE 264

Query: 132 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIAL-ACG 190
           ++K +T G GVDY FEC G+ SLL+EA  +T+ G GK +++G+      P+++ +     
Sbjct: 265 VIKEMTEG-GVDYSFECVGLASLLNEAFISTRTGTGKTVMLGME-KHAAPISLGSFDLLR 322

Query: 191 GRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKV 250
           GR + G+ FGG+K+K D+PIL+D    KE  L   +TH +  +EI+KA  LL++   ++ 
Sbjct: 323 GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRC 382

Query: 251 LI 252
           ++
Sbjct: 383 IL 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/252 (42%), Positives = 163/252 (64%), Gaps = 3/252 (1%)

Query: 3   DGTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAA 61
           D +SR + + G+ L+H  + S++SEY V+D   VV++D SI  S A  LSCG +TG GAA
Sbjct: 137 DNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTGVGAA 196

Query: 62  WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP 121
           W+ A+VEKGS+V + GLG++GL   +GAR+ GA++IIG+D NP K + G+ FG+T+F+N 
Sbjct: 197 WETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFGVTEFVNS 256

Query: 122 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMV 180
                  +SE++  +T G G DYCFEC G  SL+ EA    + G GK I +GV    + +
Sbjct: 257 MTCEKNRVSEVINEMTDG-GADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPGSQI 315

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
            L+   +   G+ L G+ FGG+K K+ +PILL +  + E +L + +TH +K EEI+ A Q
Sbjct: 316 CLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEEINDAFQ 375

Query: 241 LLKQPDCVKVLI 252
           LL +  C++ ++
Sbjct: 376 LLLEGKCIRCVL 387

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8LEB2|ADHL6_ARATH Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/250 (41%), Positives = 158/250 (63%), Gaps = 2/250 (0%)

Query: 3   DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW 62
           D  +R S++G+ +YH  + S++SEY V+ +   V+VDP   L     LSCG   G GAAW
Sbjct: 130 DQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 189

Query: 63  KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD 122
             A+V+KGSSV + GLGTVGL    GA+++GAA+I+G+D NP K E+ + FG+TDFIN +
Sbjct: 190 NVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDFINSN 249

Query: 123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPL 182
           D  ++ I +++K +T G G D+ FEC G   + + AL++   G G  + +GV        
Sbjct: 250 DL-SEPIPQVIKRMTGG-GADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKPEVS 307

Query: 183 NVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL 242
               L   G++LKGT FGG K KSDLP L+DK  NKE  + + +TH++  +EI+KA  L+
Sbjct: 308 AHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAFVLM 367

Query: 243 KQPDCVKVLI 252
           ++  C++ ++
Sbjct: 368 REGKCLRCVL 377

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|A1L4Y2|ADHL3_ARATH Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1

 Score =  199 bits (506), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/247 (42%), Positives = 154/247 (62%), Gaps = 4/247 (1%)

Query: 9   SVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVE 68
           S + Q +YH  + ST++EY V+D+  VV++DP+  L   S LSCG +TG GAAW  A V+
Sbjct: 145 SSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQMSLLSCGVSTGVGAAWNIANVK 204

Query: 69  KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS 128
           +G S AV GLG+VGL   +GAR +GA++IIG+D N  K EKG+  G+TDFINP D   K 
Sbjct: 205 EGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASKFEKGKLMGVTDFINPKDL-TKP 263

Query: 129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIAL 187
           + ++++ IT G GVDY FECTG   +L EA  +T VG G  +++G+      +PL+ + L
Sbjct: 264 VHQMIREITGG-GVDYSFECTGNVDVLREAFLSTHVGWGSTVLVGIYPTPRTLPLHPMEL 322

Query: 188 ACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC 247
              GR + G+ FGG K KS LP    +C     KL   +T+ +  E+I+ A QLL+    
Sbjct: 323 F-DGRRITGSVFGGFKPKSQLPNFAQQCMKGVVKLEPFITNELPFEKINDAFQLLRDGKS 381

Query: 248 VKVLITI 254
           ++ ++ I
Sbjct: 382 LRCILQI 388

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/256 (41%), Positives = 154/256 (60%), Gaps = 10/256 (3%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D  SR SV G+ +YH    ST+S+Y V+    V ++DP+  L     L CG  TG GA
Sbjct: 126 MNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGA 185

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
            W  A+VE GS+VA+ GLGTVGL   +GA+  GA++IIGID +  K E  + FG+ +F+N
Sbjct: 186 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVN 245

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--- 177
           P D  +K I E++  +T G GVDY FEC G  S++  ALE    G G  +++GV      
Sbjct: 246 PKDH-DKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 303

Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +  P  ++     GR  KGT FGG K+++ +P L++K  NKE K+ + +TH++ L EI+
Sbjct: 304 ISTRPFQLVT----GRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEIN 359

Query: 237 KAIQLLKQPDCVKVLI 252
           KA  LL +  C++ ++
Sbjct: 360 KAFDLLHEGTCLRCVL 375

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1

 Score =  193 bits (491), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 152/258 (58%), Gaps = 10/258 (3%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D  SR SV+G+ +YH    ST+S+Y V+    V ++ P   L     L CG  TG GA
Sbjct: 125 MADRKSRFSVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPTGLGA 184

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
            W  A+VE GS VA+ GLGTVGL   +GA+  GA++IIGID +  K +  + FG+T+FIN
Sbjct: 185 VWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYDTAKNFGVTEFIN 244

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--- 177
           P D   K I +++  +T G GVDY FEC G  S++  ALE    G G  +++GV      
Sbjct: 245 PKDH-EKPIQQVIIDLTDG-GVDYSFECLGNVSVMRSALECCHKGWGTSVIVGVAASGQE 302

Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +  P  ++     GR  KGT FGG K++S +P L++K   KE K+ + +TH++ L EI+
Sbjct: 303 ISTRPFQLVT----GRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEIN 358

Query: 237 KAIQLLKQPDCVKVLITI 254
           KA  LL +  C++ ++ +
Sbjct: 359 KAFDLLHEGQCLRCVLAV 376

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 153/256 (59%), Gaps = 10/256 (3%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D  SR S+ G+ +YH    ST+S+Y V+    V +++P   L     L CG +TG GA
Sbjct: 128 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGA 187

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
            W  A+VE GS VA+ GLGTVGL   +GA+  GA++IIGID +  K +  + FG+T+F+N
Sbjct: 188 VWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEFVN 247

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--- 177
           P D  +K I +++  +T G GVDY FEC G  S++  ALE    G G  +++GV      
Sbjct: 248 PKDH-DKPIQQVIVDLTDG-GVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQE 305

Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +  P  ++     GR  KGT FGG K++S +P L++K  NKE K+ + +TH + L +I+
Sbjct: 306 ISTRPFQLVT----GRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDIN 361

Query: 237 KAIQLLKQPDCVKVLI 252
           KA  LL +  C++ ++
Sbjct: 362 KAFDLLHEGGCLRCVL 377

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 153/256 (59%), Gaps = 10/256 (3%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D  SR S+ G+ +YH    ST+S+Y V+    V +++P   L     L CG +TG GA
Sbjct: 128 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGA 187

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
            W  A+VE GS VA+ GLGTVGL   +GA+  GA++IIGID +  K +  + FG+T+F+N
Sbjct: 188 VWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEFVN 247

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--- 177
           P D  +K I +++  +T G GVDY FEC G  S++  ALE    G G  +++GV      
Sbjct: 248 PKDH-DKPIQQVIVDLTDG-GVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQE 305

Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +  P  ++     GR  KGT FGG K++S +P L++K  NKE K+ + +TH + L +I+
Sbjct: 306 ISTRPFQLVT----GRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDIN 361

Query: 237 KAIQLLKQPDCVKVLI 252
           KA  LL +  C++ ++
Sbjct: 362 KAFDLLHEGGCLRCVL 377

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
224142703	377	predicted protein [Populus trichocarpa]	0.996	0.671	0.728	1e-104
224144870	336	predicted protein [Populus trichocarpa]	0.992	0.75	0.692	2e-98
224144873	378	predicted protein [Populus trichocarpa]	0.992	0.666	0.688	3e-97
225435026	392	PREDICTED: alcohol dehydrogenase-like 1-	0.992	0.642	0.669	8e-95
367460047	375	alcohol dehydrogenase-like [Glycine max]	0.992	0.672	0.665	2e-93
356543227	375	PREDICTED: alcohol dehydrogenase-like 2-	0.992	0.672	0.661	4e-93
297746116	527	unnamed protein product [Vitis vinifera]	0.992	0.478	0.658	6e-93
357487763	374	Alcohol dehydrogenase class-3 [Medicago	0.992	0.673	0.633	4e-92
356543237	375	PREDICTED: LOW QUALITY PROTEIN: alcohol	0.992	0.672	0.645	2e-91
147843919	402	hypothetical protein VITISV_023790 [Viti	0.972	0.614	0.656	2e-91

>gi|224142703|ref|XP_002324694.1| predicted protein [Populus trichocarpa] gi|222866128|gb|EEF03259.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/254 (72%), Positives = 215/254 (84%), Gaps = 1/254 (0%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSRMS+ GQKLYH+ +CSTWSEYMVID NYVV++DPSIDL HASFLSCGF+TGFG+
Sbjct: 125 MPDGTSRMSINGQKLYHLITCSTWSEYMVIDTNYVVKIDPSIDLPHASFLSCGFSTGFGS 184

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AW+EA VEKGSSVAV+GLG VGLGA++GARMQGAAKIIGIDKN  K+EKG+AFGMTDFIN
Sbjct: 185 AWREANVEKGSSVAVIGLGAVGLGAIEGARMQGAAKIIGIDKNEKKREKGQAFGMTDFIN 244

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           PD+  NK ISEL+K IT G+GVDYCFECTGV  L++EAL  TK GKG+  V+G G D  V
Sbjct: 245 PDEYFNKPISELIKDITGGLGVDYCFECTGVGPLINEALLATKPGKGETFVVGAGTDLTV 304

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
            +N + L CGG TLKG+ FGG+K KS LPILLDKCKNKEF L +LLTH V L++I+KA Q
Sbjct: 305 SINFLPLLCGG-TLKGSLFGGLKIKSHLPILLDKCKNKEFNLDELLTHQVMLDDINKAFQ 363

Query: 241 LLKQPDCVKVLITI 254
           LL+QPDCVKVLI +
Sbjct: 364 LLEQPDCVKVLIKM 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144870|ref|XP_002325445.1| predicted protein [Populus trichocarpa] gi|222862320|gb|EEE99826.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 176/254 (69%), Positives = 215/254 (84%), Gaps = 2/254 (0%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           MLDGTSRMS++GQKLYH+F+CSTWSEYMVID+NYV ++DPSI L HAS LSCGF+TGFGA
Sbjct: 85  MLDGTSRMSIKGQKLYHMFTCSTWSEYMVIDSNYVNKIDPSIPLPHASVLSCGFSTGFGA 144

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AWKEA+V+ GS+VAVLGLG VGLG  +GARM GAAKIIG+DKN  KK+KG AFGMTDFIN
Sbjct: 145 AWKEAQVKMGSTVAVLGLGAVGLGVTEGARMLGAAKIIGVDKNSMKKDKGLAFGMTDFIN 204

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           PD+  +KSIS+++K +T GMGVDYCFEC G  SL+++A++ TK GKGK IVIG G+++ V
Sbjct: 205 PDECSDKSISQMIKDLTGGMGVDYCFECVGAESLINQAIQATKEGKGKAIVIGGGINS-V 263

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
            ++   L   GRTLKG+ FGG+K KSDLPIL++KCKNKEF L +LLTH V L++I+KA +
Sbjct: 264 KIDYAPLL-SGRTLKGSVFGGLKVKSDLPILMEKCKNKEFDLDELLTHEVTLQDIEKAFE 322

Query: 241 LLKQPDCVKVLITI 254
           LLKQPDCVKVLI I
Sbjct: 323 LLKQPDCVKVLIKI 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144873|ref|XP_002325446.1| predicted protein [Populus trichocarpa] gi|222862321|gb|EEE99827.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/254 (68%), Positives = 211/254 (83%), Gaps = 2/254 (0%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           MLDGTSRMS+ GQKLYH+F+CSTWSEYMVID+NYV ++DPSI L HAS LSCGF+TGFGA
Sbjct: 127 MLDGTSRMSINGQKLYHMFTCSTWSEYMVIDSNYVNKIDPSIPLPHASVLSCGFSTGFGA 186

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AWKEA+V+ GS+VAVLGLG VGLG  +GARM GAAKIIG+DKN  KK+KG AFGMTDFIN
Sbjct: 187 AWKEAQVKMGSTVAVLGLGAVGLGVTEGARMLGAAKIIGVDKNSMKKDKGLAFGMTDFIN 246

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           PD+  +KSIS+++K +T GMGVDYCFEC G  SL+++A++ TK GKGK IVIG G+ + V
Sbjct: 247 PDECSDKSISQMIKDLTGGMGVDYCFECVGAESLINQAIQATKEGKGKTIVIGGGISS-V 305

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
            ++ + L   GRTLKG+ FGG+K KSDLPIL  KCKNKEF L +LLTH V L++I+KA +
Sbjct: 306 KIDYLPLL-SGRTLKGSLFGGLKVKSDLPILFQKCKNKEFDLDELLTHEVTLQDIEKAFE 364

Query: 241 LLKQPDCVKVLITI 254
           LL QPDCVKVLI I
Sbjct: 365 LLNQPDCVKVLIKI 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435026|ref|XP_002281265.1| PREDICTED: alcohol dehydrogenase-like 1-like [Vitis vinifera]

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 170/254 (66%), Positives = 214/254 (84%), Gaps = 2/254 (0%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSRMS+RGQ+L+HIFSCSTW+EYMV++ANY+V++DP I  S ASFLSCGF+TG+GA
Sbjct: 141 MPDGTSRMSIRGQRLHHIFSCSTWTEYMVVNANYLVKIDPRIAPSDASFLSCGFSTGYGA 200

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AWK+A+VEKGSSVAVLGLG VGLG + GAR QGAA+IIGIDKN  ++E GEAFGMTDFIN
Sbjct: 201 AWKDAKVEKGSSVAVLGLGAVGLGVLQGARNQGAARIIGIDKNERRREVGEAFGMTDFIN 260

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P +E NKSISELV  +T G GVDY FECTG+PSL++EAL+ TKVGKG  +V+G+     V
Sbjct: 261 P-NESNKSISELVNELTGGQGVDYSFECTGIPSLVNEALQATKVGKGMSMVLGIANVPTV 319

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
            ++++AL   G+TLKG  FGGIK +SD+P+++DKC NK+ +L +LLTH V+LE+++KA +
Sbjct: 320 DISLMALL-SGKTLKGCFFGGIKVQSDIPVIVDKCINKDIQLDELLTHEVQLEDMNKAFE 378

Query: 241 LLKQPDCVKVLITI 254
           LLKQPDCVKVLI I
Sbjct: 379 LLKQPDCVKVLIKI 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|367460047|ref|NP_001238395.2| alcohol dehydrogenase-like [Glycine max]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 169/254 (66%), Positives = 208/254 (81%), Gaps = 2/254 (0%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSRMS+RG+++YHIFSC+TWSEYMV DANYV++VDP+ID +HASF+SCGF+TGFGA
Sbjct: 123 MPDNTSRMSIRGERIYHIFSCATWSEYMVSDANYVLKVDPTIDRAHASFISCGFSTGFGA 182

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AWKEA+VE GS+VAV GLG VGLGAV G++MQGA++IIGID N  K+ KGEAFG+TDFIN
Sbjct: 183 AWKEAKVESGSTVAVFGLGAVGLGAVIGSKMQGASRIIGIDTNENKRAKGEAFGITDFIN 242

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P D  NKS SELVK ++ GMGVDY FECTGV +LLSE+LE TK+G GK IVIGVG++  +
Sbjct: 243 PGDS-NKSASELVKELSGGMGVDYSFECTGVSTLLSESLEATKIGTGKAIVIGVGIEITL 301

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
           PL + A+   GRTLKG+ FGG++  SDL IL DK   KEF L +L TH V L +I+KA +
Sbjct: 302 PLGLFAILL-GRTLKGSVFGGLRAISDLSILADKGHKKEFPLQELFTHEVTLADINKAFE 360

Query: 241 LLKQPDCVKVLITI 254
           LLKQP+CVKV+I +
Sbjct: 361 LLKQPNCVKVVINM 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543227|ref|XP_003540064.1| PREDICTED: alcohol dehydrogenase-like 2-like isoform 1 [Glycine max]

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 168/254 (66%), Positives = 207/254 (81%), Gaps = 2/254 (0%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSRMS+RG+++YHIFSC+TWSEYMV DANYV++VDP+ID +HASF+SCGF+TGFGA
Sbjct: 123 MPDNTSRMSIRGERIYHIFSCATWSEYMVSDANYVLKVDPTIDRAHASFISCGFSTGFGA 182

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AWKEA+VE GS+VAV GLG VGLGAV G++MQGA++IIGID N  K+ KGEAFG+TDFIN
Sbjct: 183 AWKEAKVESGSTVAVFGLGAVGLGAVIGSKMQGASRIIGIDTNENKRAKGEAFGITDFIN 242

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P D  NKS SELVK ++ GMG DY FECTGV +LLSE+LE TK+G GK IVIGVG++  +
Sbjct: 243 PGDS-NKSASELVKELSGGMGADYSFECTGVSTLLSESLEATKIGTGKAIVIGVGIEITL 301

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
           PL + A+   GRTLKG+ FGG++  SDL IL DK   KEF L +L TH V L +I+KA +
Sbjct: 302 PLGLFAILL-GRTLKGSVFGGLRAISDLSILADKGHKKEFPLQELFTHEVTLADINKAFE 360

Query: 241 LLKQPDCVKVLITI 254
           LLKQP+CVKV+I +
Sbjct: 361 LLKQPNCVKVVINM 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746116|emb|CBI16172.3| unnamed protein product [Vitis vinifera]

 Score =  346 bits (887), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 170/258 (65%), Positives = 214/258 (82%), Gaps = 6/258 (2%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSRMS+RGQ+L+HIFSCSTW+EYMV++ANY+V++DP I  S ASFLSCGF+TG+GA
Sbjct: 272 MPDGTSRMSIRGQRLHHIFSCSTWTEYMVVNANYLVKIDPRIAPSDASFLSCGFSTGYGA 331

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AWK+A+VEKGSSVAVLGLG VGLG + GAR QGAA+IIGIDKN  ++E GEAFGMTDFIN
Sbjct: 332 AWKDAKVEKGSSVAVLGLGAVGLGVLQGARNQGAARIIGIDKNERRREVGEAFGMTDFIN 391

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P +E NKSISELV  +T G GVDY FECTG+PSL++EAL+ TKVGKG  +V+G+     V
Sbjct: 392 P-NESNKSISELVNELTGGQGVDYSFECTGIPSLVNEALQATKVGKGMSMVLGIANVPTV 450

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNK----EFKLHQLLTHHVKLEEID 236
            ++++AL   G+TLKG  FGGIK +SD+P+++DKC NK    + +L +LLTH V+LE+++
Sbjct: 451 DISLMALL-SGKTLKGCFFGGIKVQSDIPVIVDKCINKASSLDIQLDELLTHEVQLEDMN 509

Query: 237 KAIQLLKQPDCVKVLITI 254
           KA +LLKQPDCVKVLI I
Sbjct: 510 KAFELLKQPDCVKVLIKI 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487763|ref|XP_003614169.1| Alcohol dehydrogenase class-3 [Medicago truncatula] gi|355515504|gb|AES97127.1| Alcohol dehydrogenase class-3 [Medicago truncatula]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 161/254 (63%), Positives = 210/254 (82%), Gaps = 2/254 (0%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSR+SVRGQ+LYH+ SC+TWSEY+V+D NY+++VDP+I+L++ASF+SCGF+TG+GA
Sbjct: 123 MPDNTSRLSVRGQRLYHVLSCATWSEYVVVDVNYLLKVDPTINLAYASFISCGFSTGYGA 182

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AWKEA+V+ GSSVAV GLG VGLG + GA+M GA+KIIG+DKN  K+EKGEAFGMT FIN
Sbjct: 183 AWKEAKVKSGSSVAVFGLGAVGLGVIGGAKMMGASKIIGVDKNEMKREKGEAFGMTHFIN 242

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P     KS S+LVK ++ GMGVDY FECTGVPSLL+ ++E TK+G GK I IG GV+ +V
Sbjct: 243 PSGS-YKSASDLVKELSGGMGVDYSFECTGVPSLLNVSVEATKLGTGKTIAIGSGVENIV 301

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
           P ++IA+   GRTLKG+ FGG+KT SDLPI+ DKC+N+EF L +L TH V L +I+KA +
Sbjct: 302 PFDLIAILF-GRTLKGSVFGGLKTASDLPIIADKCQNEEFPLQELFTHEVPLADINKAFE 360

Query: 241 LLKQPDCVKVLITI 254
           ++KQP+CVKV+I +
Sbjct: 361 IMKQPNCVKVVIKM 374

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543237|ref|XP_003540069.1| PREDICTED: LOW QUALITY PROTEIN: alcohol dehydrogenase-like 2-like [Glycine max]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/254 (64%), Positives = 207/254 (81%), Gaps = 2/254 (0%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSRMS+RG+++YHI SC+TWSEYMV DANY+++VDP+ID +HASF+SCGF+TGFGA
Sbjct: 123 MPDNTSRMSIRGERIYHITSCATWSEYMVSDANYILKVDPTIDRAHASFISCGFSTGFGA 182

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AWKEA VE GS+VAV GLG VGLGAV GA++QGA++IIGID N  K+EKGEAFG+TDFIN
Sbjct: 183 AWKEANVESGSTVAVFGLGAVGLGAVIGAKLQGASRIIGIDTNENKREKGEAFGITDFIN 242

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P D  N S SELVK +T GMGVDY FECTGV ++L+E+LE TK+G GK IVI VG + ++
Sbjct: 243 PGDSDN-SASELVKELTGGMGVDYSFECTGVSTVLTESLEATKIGTGKTIVISVGAEPIL 301

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
           P+ + A+   GRTLKGT FGG+K  SDL I+ +KC+ KEF L +L TH V L +I+KA +
Sbjct: 302 PVGLFAIL-HGRTLKGTLFGGLKAVSDLSIVAEKCQKKEFPLQELFTHEVTLADINKAFE 360

Query: 241 LLKQPDCVKVLITI 254
           L+KQP+CVKV+I +
Sbjct: 361 LVKQPNCVKVVINM 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843919|emb|CAN83716.1| hypothetical protein VITISV_023790 [Vitis vinifera]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/253 (65%), Positives = 210/253 (83%), Gaps = 6/253 (2%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSRMS+RGQ+L+HIFSCSTW+EYMV++ANY+V++DP I  S ASFLSCGF+TG+GA
Sbjct: 111 MPDGTSRMSIRGQRLHHIFSCSTWTEYMVVNANYLVKIDPRIAPSDASFLSCGFSTGYGA 170

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AWK+A+VEKGSSVAVLGLG VGLG + GAR QGAA+IIGIDKN  ++E GEAFGMTDFIN
Sbjct: 171 AWKDAKVEKGSSVAVLGLGAVGLGVLQGARNQGAARIIGIDKNERRREVGEAFGMTDFIN 230

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P +E NKSISELV  +T G GVDY FECTG+PSL++EAL+ TKVGKG  +V+G+     V
Sbjct: 231 P-NESNKSISELVNELTGGQGVDYSFECTGIPSLVNEALQATKVGKGMSMVLGIANVPTV 289

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNK----EFKLHQLLTHHVKLEEID 236
            ++++AL   G+TLKG  FGGIK +SD+P+++DKC NK    + +L +LLTH V+LE+++
Sbjct: 290 DISLMALL-SGKTLKGCFFGGIKVQSDIPVIVDKCINKASSLDIQLDELLTHEVQLEDMN 348

Query: 237 KAIQLLKQPDCVK 249
           KA +LLKQPDCVK
Sbjct: 349 KAFELLKQPDCVK 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.968	0.632	0.412	3.5e-43
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.968	0.637	0.384	1.2e-42
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.940	0.615	0.388	2.2e-41
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.980	0.638	0.361	4.2e-40
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.976	0.650	0.348	1.8e-39
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.968	0.624	0.371	7e-38
SGD|S000002327	386	SFA1 "Bifunctional alcohol deh	0.984	0.647	0.335	4.6e-34
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.968	0.649	0.320	2e-33
UNIPROTKB|J9P795	379	ADH4 "Uncharacterized protein"	0.980	0.656	0.318	4.1e-33
UNIPROTKB|G4N4N6	381	MGG_06011 "S-(Hydroxymethyl)gl	0.984	0.656	0.338	4.1e-33

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 103/250 (41%), Positives = 137/250 (54%)

Query:     5 TSRMSVR-GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWK 63
             TSR     G+ +YH    S++SEY V+D  ++V++ P I +  A+ LSCG +TG GAAWK
Sbjct:   138 TSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTGIGAAWK 197

Query:    64 EAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDD 123
              A VEK                    R++GA KIIG+D NP K E G+ FG TDFIN   
Sbjct:   198 VANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTDFINSTL 257

Query:   124 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD-TMVPL 182
                  ISE++K +T G GVDY FEC G+PSLL+EA  +T                T V L
Sbjct:   258 CGENKISEVIKEMTGG-GVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSL 316

Query:   183 NVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL 242
                 L   GR + G+ FGG+K K D+PIL+D    KE  L   +TH +K EEI+KA  LL
Sbjct:   317 GSFDLL-RGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLL 375

Query:   243 KQPDCVKVLI 252
              Q   ++ ++
Sbjct:   376 VQGKSLRCIL 385

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 96/250 (38%), Positives = 145/250 (58%)

Query:     5 TSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWK 63
             TSR    RG+ ++H    S+++EY V+D  ++V++ P I +  A+ LSC   TG GAAWK
Sbjct:   135 TSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVATGLGAAWK 194

Query:    64 EAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDD 123
              A+VE+                    R++GAAKIIG+D NP K E G+ FG+TDF+NP  
Sbjct:   195 VADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGITDFVNPAL 254

Query:   124 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMVPLN 183
                K+ISE+++ +T  +G DY FEC G+ SL+ EA ++T                + P++
Sbjct:   255 CGEKTISEVIREMTD-VGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKAL-PIS 312

Query:   184 VIAL-ACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL 242
             + +     GRT+ GT FGG+K K D+PIL+D+   KE  L  L+TH +  EEI+KA  LL
Sbjct:   313 LGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEINKAFHLL 372

Query:   243 KQPDCVKVLI 252
              + + ++ +I
Sbjct:   373 AEGNSIRCII 382

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 94/242 (38%), Positives = 137/242 (56%)

Query:    12 GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKXX 71
             G+ ++H    S++SEY V+D  ++V++ P I +  A+ LSCG +TG GAAWK A VE+  
Sbjct:   145 GEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTGIGAAWKVANVEEGS 204

Query:    72 XXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISE 131
                               R++GAAKIIGID N  K E G+ FG TDFINP     K ISE
Sbjct:   205 TIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINPTLCGEKKISE 264

Query:   132 LVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMVPLNVIAL-ACG 190
             ++K +T G GVDY FEC G+ SLL+EA  +T                  P+++ +     
Sbjct:   265 VIKEMTEG-GVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHA-APISLGSFDLLR 322

Query:   191 GRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKV 250
             GR + G+ FGG+K+K D+PIL+D    KE  L   +TH +  +EI+KA  LL++   ++ 
Sbjct:   323 GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRC 382

Query:   251 LI 252
             ++
Sbjct:   383 IL 384

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 91/252 (36%), Positives = 140/252 (55%)

Query:     3 DGTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAA 61
             D +SR + + G+ L+H  + S++SEY V+D   VV++D SI  S A  LSCG +TG GAA
Sbjct:   137 DNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTGVGAA 196

Query:    62 WKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP 121
             W+ A+VEK                    R+ GA++IIG+D NP K + G+ FG+T+F+N 
Sbjct:   197 WETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFGVTEFVNS 256

Query:   122 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD-TMV 180
                    +SE++  +T G G DYCFEC G  SL+ EA                    + +
Sbjct:   257 MTCEKNRVSEVINEMTDG-GADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPGSQI 315

Query:   181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
              L+   +   G+ L G+ FGG+K K+ +PILL +  + E +L + +TH +K EEI+ A Q
Sbjct:   316 CLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEEINDAFQ 375

Query:   241 LLKQPDCVKVLI 252
             LL +  C++ ++
Sbjct:   376 LLLEGKCIRCVL 387

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 87/250 (34%), Positives = 138/250 (55%)

Query:     3 DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW 62
             D  +R S++G+ +YH  + S++SEY V+ +   V+VDP   L     LSCG   G GAAW
Sbjct:   130 DQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 189

Query:    63 KEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD 122
               A+V+K                    +++GAA+I+G+D NP K E+ + FG+TDFIN +
Sbjct:   190 NVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDFINSN 249

Query:   123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMVPL 182
             D  ++ I +++K +T G G D+ FEC G   + + AL++                     
Sbjct:   250 DL-SEPIPQVIKRMTGG-GADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKPEVS 307

Query:   183 NVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL 242
                 L   G++LKGT FGG K KSDLP L+DK  NKE  + + +TH++  +EI+KA  L+
Sbjct:   308 AHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAFVLM 367

Query:   243 KQPDCVKVLI 252
             ++  C++ ++
Sbjct:   368 REGKCLRCVL 377

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 94/253 (37%), Positives = 134/253 (52%)

Query:     3 DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW 62
             DG S  S   Q +YH  + ST++EY V+D+  VV++DP+  L   S LSCG +TG GAAW
Sbjct:   142 DGGSSQS---QPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQMSLLSCGVSTGVGAAW 198

Query:    63 KEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD 122
               A V++                    R +GA++IIG+D N  K EKG+  G+TDFINP 
Sbjct:   199 NIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASKFEKGKLMGVTDFINPK 258

Query:   123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA-LETTXXXXXXXXXXXXXXDTMVP 181
             D   K + ++++ IT G GVDY FECTG   +L EA L T                  +P
Sbjct:   259 DL-TKPVHQMIREITGG-GVDYSFECTGNVDVLREAFLSTHVGWGSTVLVGIYPTPRTLP 316

Query:   182 LNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQL 241
             L+ + L   GR + G+ FGG K KS LP    +C     KL   +T+ +  E+I+ A QL
Sbjct:   317 LHPMELF-DGRRITGSVFGGFKPKSQLPNFAQQCMKGVVKLEPFITNELPFEKINDAFQL 375

Query:   242 LKQPDCVKVLITI 254
             L+    ++ ++ I
Sbjct:   376 LRDGKSLRCILQI 388

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

SGD|S000002327 SFA1 "Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 86/256 (33%), Positives = 132/256 (51%)

Query:     1 MLDGTSRM-SVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFG 59
             M DGT+R  + +G+ +YH   CST+SEY V+    VV +DP   L  A  L CG TTGFG
Sbjct:   127 MPDGTTRFHNAKGEDIYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFG 186

Query:    60 AAWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFI 119
             AA K A V+K                    +++GA+KII ID N  KK+    FG TDF+
Sbjct:   187 AALKTANVQKGDTVAVFGCGTVGLSVIQGAKLRGASKIIAIDINNKKKQYCSQFGATDFV 246

Query:   120 NPDDE--PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXX-XXXXXXXXXXX 176
             NP ++   +++I E +  +T G G+D+ F+CTG   ++ +ALE                 
Sbjct:   247 NPKEDLAKDQTIVEKLIEMTDG-GLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAAA 305

Query:   177 DTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
                +      L  G R  KG+ FGGIK +S++  L+   +    K+ + +TH    +EI+
Sbjct:   306 GEEISTRPFQLVTG-RVWKGSAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEIN 364

Query:   237 KAIQLLKQPDCVKVLI 252
             +A + L   DC++ ++
Sbjct:   365 QAFEDLHNGDCLRTVL 380

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA;IMP;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0033833 "hydroxymethylfurfural reductase (NADH) activity" evidence=IMP

GO:0033859 "furaldehyde metabolic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0000947 "amino acid catabolic process to alcohol via Ehrlich pathway" evidence=IGI

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046294 "formaldehyde catabolic process" evidence=IDA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA;IDA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 82/256 (32%), Positives = 131/256 (51%)

Query:     3 DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW 62
             DG SR S+ G+ +YH    ST+SEY V+ +  V +++P   L     +SCG +TG GA  
Sbjct:   128 DGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLSTGLGATL 187

Query:    63 KEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD 122
               A+ +K                    R+ GA++IIG+D N  + ++ + FG+T+ +NP 
Sbjct:   188 NVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVTECVNPK 247

Query:   123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXX--XXXDTMV 180
             D  +K I +++  +T G GVD   ECTG    + +A E                  D   
Sbjct:   248 DH-DKPIQQVIAEMTDG-GVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSKDDAFK 305

Query:   181 --PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKA 238
               P+N +      RTLKGT FG  K K+D+P +++K  NKE +L + +TH V   EI+KA
Sbjct:   306 THPMNFL----NERTLKGTFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEINKA 361

Query:   239 IQLLKQPDCVKVLITI 254
                + + + ++ +IT+
Sbjct:   362 FDYMLKGESIRCIITM 377

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

UNIPROTKB|J9P795 ADH4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 81/254 (31%), Positives = 137/254 (53%)

Query:     1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
             M D TSR + +G+ +YH    ST+++Y V+    + ++D  ++L  A    CGF+TG+GA
Sbjct:   129 MEDKTSRFTCKGKPIYHFMGTSTFTQYTVVSDINLAKIDDDVNLERACLFGCGFSTGYGA 188

Query:    61 AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
             A   A+V                      ++ GA++II ID N  K  K +A G+T+ +N
Sbjct:   189 AINTAKVTPGSTCAVFGLGGVGLSTIMGCKVAGASRIIAIDINNEKFTKAKALGITECLN 248

Query:   121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD-TM 179
             P D  NK I E++  +T+G GVD+ F+C G P  +  AL+ T              + + 
Sbjct:   249 PRDF-NKPIQEVIIEMTNG-GVDFAFDCAGGPEAMRAALDCTTVGWGSCTLIGVNSEMSR 306

Query:   180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
             + ++ + L  G RT+ GT FGG K+ S +P L+   KNK+F L  L+TH +  ++I++A 
Sbjct:   307 LTISPVELIMG-RTINGTCFGGWKSDS-IPKLVTDYKNKKFDLDLLVTHTLPFDKINEAF 364

Query:   240 QLLKQPDCVKVLIT 253
              ++ Q   +++++T
Sbjct:   365 DIMNQGKSLRIVLT 378

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|G4N4N6 MGG_06011 "S-(Hydroxymethyl)glutathione dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 86/254 (33%), Positives = 120/254 (47%)

Query:     1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
             M DGTSR   +G+ L H    ST+S++ V+    VV V P   +     L CG TTG+GA
Sbjct:   125 MPDGTSRFKCKGKDLLHFMGTSTFSQFTVVADISVVAVQPEAPMDRTCLLGCGITTGYGA 184

Query:    61 AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
             A   A VE+                     +  A KII +D NP K+E    FG TDF+N
Sbjct:   185 ARVTANVEEGSSLAVFGAGCVGLSVVQGAVINKAGKIIVVDVNPAKEEWARKFGATDFVN 244

Query:   121 PDDEPN-KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXX-XXXXXXXXXXXDT 178
             P   P  K++ + +  +T G G DY F+CTG   ++  ALE                   
Sbjct:   245 PTKLPEGKTVVDALVELTDG-GCDYTFDCTGNVQVMRAALEACHKGWGESIIIGVAAAGQ 303

Query:   179 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKA 238
              +      L  G R  KG  FGGIK +S LP L+D       K+ + +TH  KL EI+ A
Sbjct:   304 EISTRPFQLVTG-RVWKGCAFGGIKGRSQLPGLVDDYLQGRLKVDEFITHRKKLVEINNA 362

Query:   239 IQLLKQPDCVKVLI 252
              + +KQ DC++ ++
Sbjct:   363 FETMKQGDCIRAVV 376

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII1194 hypothetical protein (377 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-116
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	3e-94
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	2e-80
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	5e-75
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	9e-75
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	6e-71
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	2e-68
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	2e-67
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-66
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	2e-63
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	8e-49
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	1e-46
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	2e-46
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	8e-42
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	2e-37
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	3e-33
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	9e-33
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	3e-32
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	5e-31
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	9e-30
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	1e-29
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	7e-28
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	6e-27
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-26
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-26
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	2e-26
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	2e-26
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	1e-25
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	6e-25
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	9e-25
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	5e-24
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	8e-22
cd05281	341	cd05281, TDH, Threonine dehydrogenase	7e-20
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	4e-19
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	5e-19
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	7e-19
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	6e-18
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	5e-17
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	2e-16
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	4e-16
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	7e-16
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	1e-15
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	2e-15
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	3e-15
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	1e-14
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	7e-14
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	1e-13
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-13
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	6e-13
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	2e-12
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	2e-12
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	5e-12
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	6e-12
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-11
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-11
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	2e-11
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	5e-11
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	8e-11
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	4e-09
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	6e-09
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	2e-08
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	2e-08
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	3e-08
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-07
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	2e-06
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	4e-06
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	7e-06
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-05
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	1e-05
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	2e-05
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-05
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	3e-05
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	2e-04
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	3e-04
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	5e-04
cd08293	345	cd08293, PTGR2, Prostaglandin reductase	0.002

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  336 bits (864), Expect = e-116
 Identities = 126/253 (49%), Positives = 175/253 (69%), Gaps = 3/253 (1%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + +G+K+YH    ST+S+Y V+D NYV ++DP+  L H   L CGF+TG+GA
Sbjct: 116 MPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGA 175

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AW  A+VE GS+VAV GLG VGL A+ GA++ GA++IIG+D N  K EK + FG TDFIN
Sbjct: 176 AWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFIN 235

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P D   K +SE+++ +T G GVDY FECTG   L++EALE+TK+G G  +V+GV     +
Sbjct: 236 PKDSD-KPVSEVIREMT-GGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAEL 293

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
            +    L   GRT KG+ FGG K++SD+P L+ K  NK+F L +L+TH +  EEI+K   
Sbjct: 294 SIRPFQLIL-GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFD 352

Query: 241 LLKQPDCVKVLIT 253
           L+K  +C++ +IT
Sbjct: 353 LMKSGECIRTVIT 365

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  281 bits (720), Expect = 3e-94
 Identities = 110/252 (43%), Positives = 160/252 (63%), Gaps = 4/252 (1%)

Query: 3   DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW 62
           DG SR S+ G+ +YH    ST+SEY V+    V +++P   L     LSCG +TG GAAW
Sbjct: 121 DGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAW 180

Query: 63  KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD 122
             A+V+KGS+VA+ GLG VGL   +GAR++GA++IIG+D NP K E+ + FG+T+F+NP 
Sbjct: 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK 240

Query: 123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVP 181
           D  +K + E++  +T G GVDY FECTG    +  A E    G G  +++GV   D +  
Sbjct: 241 DH-DKPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFS 298

Query: 182 LNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQL 241
            + + L   GRTLKGT FGG K K+DLP L++K   KE +L + +TH +   EI+KA  L
Sbjct: 299 THPMNL-LNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDL 357

Query: 242 LKQPDCVKVLIT 253
           L + +C++ ++ 
Sbjct: 358 LLKGECLRCILH 369

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  245 bits (628), Expect = 2e-80
 Identities = 103/258 (39%), Positives = 149/258 (57%), Gaps = 12/258 (4%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR S +G+ +YH    ST+SEY V+    V +++P   L     L CG TTG+GA
Sbjct: 118 MPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGA 177

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
               A+VE GS+VAV GLG VGL  + GA+  GA++IIGID NP K E  + FG TD +N
Sbjct: 178 VLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVN 237

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG----- 175
           P D   K I +++  +T G GVDY FEC G   ++  ALE    G G  ++IGV      
Sbjct: 238 PKDHD-KPIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQE 295

Query: 176 VDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEI 235
           + T  P  ++     GR  KGT FGG K++S +P L++     + K+ + +TH + L+EI
Sbjct: 296 ISTR-PFQLVT----GRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEI 350

Query: 236 DKAIQLLKQPDCVKVLIT 253
           ++A  L+     ++ ++ 
Sbjct: 351 NEAFDLMHAGKSIRTVVK 368

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  232 bits (593), Expect = 5e-75
 Identities = 112/255 (43%), Positives = 160/255 (62%), Gaps = 6/255 (2%)

Query: 3   DGTSRMSVR--GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           DG +R S +  GQ +YH  + ST++EY V+D+  VV++DP+  L   S LSCG +TG GA
Sbjct: 130 DGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGA 189

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           AW  A V+ GSSVA+ GLG VGL   +GAR +GA+KIIG+D NP K EKG+  G+TDFIN
Sbjct: 190 AWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFIN 249

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTM 179
           P D  +K + E ++ +T G GVDY FEC G   +L EA  +T  G G  +++G+     M
Sbjct: 250 PKDS-DKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKM 307

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           +PL+ + L   GR++ G+ FG  K KS LP L  +C      L   +TH +  E+I++A 
Sbjct: 308 LPLHPMELF-DGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAF 366

Query: 240 QLLKQPDCVKVLITI 254
           QLL+    ++ L+ +
Sbjct: 367 QLLEDGKALRCLLHL 381

Length = 381

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  231 bits (591), Expect = 9e-75
 Identities = 102/255 (40%), Positives = 147/255 (57%), Gaps = 6/255 (2%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGT+R+S  G  +YH   CST++EY V+    +V++DP   L  A  L CG TTG GA
Sbjct: 117 MPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGA 176

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
               A+VE G +VAV GLG VGL A+ GA+  GA +II +D NP K E  + FG T F+N
Sbjct: 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVN 236

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTM 179
           P +  +  + E +  +T G G DY FEC G   ++ +ALE T  G G  ++IGV G    
Sbjct: 237 PKEVDD--VVEAIVELTDG-GADYAFECVGNVEVMRQALEATHRG-GTSVIIGVAGAGQE 292

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           +      L   GR  KG+ FGG + +SD+P L+D     +  L +L+TH + LE+I++A 
Sbjct: 293 ISTRPFQLV-TGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAF 351

Query: 240 QLLKQPDCVKVLITI 254
            L+ +   ++ +I  
Sbjct: 352 DLMHEGKSIRSVIRF 366

Length = 366

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  221 bits (565), Expect = 6e-71
 Identities = 109/250 (43%), Positives = 159/250 (63%), Gaps = 2/250 (0%)

Query: 3   DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW 62
           D  +R S++G+ +YH  + S++SEY V+ +   V+VDP   L     LSCG   G GAAW
Sbjct: 127 DQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 186

Query: 63  KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD 122
             A+V KGSSV + GLGTVGL    GA+++GA++IIG+D NP K EK + FG+TDFINP+
Sbjct: 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPN 246

Query: 123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPL 182
           D  ++ I +++K +T G G DY FEC G   + + AL++   G G  + +GV        
Sbjct: 247 D-LSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVS 304

Query: 183 NVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL 242
               L   GRTLKG+ FGG K KSDLP L+DK  NKE  + + +TH++  +EI+KA +L+
Sbjct: 305 AHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELM 364

Query: 243 KQPDCVKVLI 252
           ++  C++ +I
Sbjct: 365 REGKCLRCVI 374

Length = 378

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  215 bits (549), Expect = 2e-68
 Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 5/254 (1%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGT R +  G+ +  +    T++EY V+    VV++D  I L  A+ L CG TTG GA
Sbjct: 114 LPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGA 173

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
               A V  G +VAV+G G VGL A+ GAR+ GA++II +D  P K E    FG T  +N
Sbjct: 174 VVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVN 233

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG-VDTM 179
             ++      E V+ +T G G DY FE  G  + + +AL  T+ G G  +V+G+G     
Sbjct: 234 ASED---DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGET 289

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           V L  + L    + L+G+ +G    + D+P LLD  +    KL +L+T    L+EI++A 
Sbjct: 290 VSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAF 349

Query: 240 QLLKQPDCVKVLIT 253
             +   +  + +I 
Sbjct: 350 ADMLAGENARGVIV 363

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  212 bits (542), Expect = 2e-67
 Identities = 96/254 (37%), Positives = 145/254 (57%), Gaps = 4/254 (1%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + +G+ ++H    ST+SEY V+D   V ++D +  L     + CGF+TG+GA
Sbjct: 122 MQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGA 181

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V  GS+ AV GLG VGL A+ G +  GA++II +D N  K  K +  G T+ IN
Sbjct: 182 AVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECIN 241

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDT-M 179
           P D   K I E++  +T G GVD+ FE  G    +  AL +   G G  +++GV   +  
Sbjct: 242 PQDY-KKPIQEVLTEMTDG-GVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQN 299

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           + +N + L   GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I++  
Sbjct: 300 LSINPMLLLT-GRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGF 358

Query: 240 QLLKQPDCVKVLIT 253
            LL+    ++ ++T
Sbjct: 359 DLLRSGKSIRTVLT 372

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  210 bits (536), Expect = 1e-66
 Identities = 100/254 (39%), Positives = 151/254 (59%), Gaps = 4/254 (1%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + +G+ ++H    ST++EY V+    + ++DP   L     + CGF+TG+GA
Sbjct: 115 MSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGA 174

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V  GS+ AV GLG VGL  + G +  GA++II +D N  K EK +  G T+ IN
Sbjct: 175 AVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECIN 234

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM 179
           P D  +K I E++  +T G GVDY FE  G    L +AL+ T++G G  +V+GV    T 
Sbjct: 235 PRD-QDKPIVEVLTEMTDG-GVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTE 292

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
             L+   L   GRT+KGT FGG K+K  +P L+   + K+F L +L+TH +  EEI+   
Sbjct: 293 ATLDPNDLL-TGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGF 351

Query: 240 QLLKQPDCVKVLIT 253
            L++  + ++ ++T
Sbjct: 352 DLMRSGESIRTILT 365

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  202 bits (515), Expect = 2e-63
 Identities = 103/254 (40%), Positives = 150/254 (59%), Gaps = 4/254 (1%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR S  GQ +YH   CST+SEY V+    + +++P+  L     L CG TTG GA
Sbjct: 117 MPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGA 176

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
               A+VE+G +VAV GLG +GL  + GARM  A++II ID NP K E  +  G TD +N
Sbjct: 177 VLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVN 236

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTM 179
           P+D  +K I E++  IT G GVDY FEC G  +++  ALE    G G+ I+IGV G    
Sbjct: 237 PNDY-DKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQE 294

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           +      L   GR  +G+ FGG+K +++LP ++++    E  L   +TH + LE+I++A 
Sbjct: 295 ISTRPFQLVT-GRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAF 353

Query: 240 QLLKQPDCVKVLIT 253
            L+ +   ++ +I 
Sbjct: 354 DLMHEGKSIRTVIH 367

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  164 bits (417), Expect = 8e-49
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 9/242 (3%)

Query: 3   DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW 62
           DGT R    GQ +  +    T+SEY V+    VV++D  I L  A  + CG  TG+G+A 
Sbjct: 119 DGTYRFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAV 178

Query: 63  KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD 122
             A+V  G +V V+G+G VG+ AV GA + GA K+I +D   +K+E+   FG T      
Sbjct: 179 NIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAFASM 238

Query: 123 DEPNKSISELVKGITHGMGVDYCFECTGV--PSLLSEALETTKVGKGKVIVIGVG--VDT 178
           +E  + + EL    T+G G D      G      ++EAL  T+ G G+V+V G+G   D 
Sbjct: 239 EEAVQLVREL----TNGQGADKTIITVGEVDGEHIAEALSATRKG-GRVVVTGLGPMADV 293

Query: 179 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKA 238
            V +N+  L    + L+GT FGG   ++D+P LL+  +  + KL +L+T    L++I++ 
Sbjct: 294 DVKVNLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRTYTLDQINEG 353

Query: 239 IQ 240
            Q
Sbjct: 354 YQ 355

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  158 bits (403), Expect = 1e-46
 Identities = 78/256 (30%), Positives = 128/256 (50%), Gaps = 10/256 (3%)

Query: 1   MLDGTSRMSVRGQK--LYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGF 58
             DG++ +S+        H F  S+++ Y V+    VV+VD  + L   + L CG  TG 
Sbjct: 116 RPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGA 175

Query: 59  GAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF 118
           GA     +   GSS+AV G G VGL AV  A++ G   II +D    + E  +  G T  
Sbjct: 176 GAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHV 235

Query: 119 INPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG-VD 177
           INP +E    +   ++ IT G GVDY  + TGVP+++ +A++      G + ++G     
Sbjct: 236 INPKEE---DLVAAIREITGG-GVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPG 290

Query: 178 TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDK 237
             V L+V  L   G+T++G   G    +  +P L++  +  +F   +L+T +   E+I++
Sbjct: 291 AEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTFY-PFEDINQ 349

Query: 238 AIQLLKQPDCVK-VLI 252
           AI   +    +K VL 
Sbjct: 350 AIADSESGKVIKPVLR 365

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  158 bits (401), Expect = 2e-46
 Identities = 83/253 (32%), Positives = 126/253 (49%), Gaps = 6/253 (2%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           +L G  R+ +RG ++ H    S ++EY V+    VV++D  + L  A+   C   TG GA
Sbjct: 123 LLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGA 182

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
               A V  G SVAV+GLG VGL A+ GA   GA++++ +D N  K       G T  +N
Sbjct: 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVN 242

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDT-M 179
             D    +  E V+ +T G GVDY FE  G    L  A E T+ G G  +  G+      
Sbjct: 243 AGDP---NAVEQVRELTGG-GVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEAR 297

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           + +  ++L    RTLKG+  G    + D+P  L    +    + +LLTH + L+EI++  
Sbjct: 298 LSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGF 357

Query: 240 QLLKQPDCVKVLI 252
             L   + V+ +I
Sbjct: 358 DRLAAGEAVRQVI 370

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  145 bits (369), Expect = 8e-42
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 7/245 (2%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGT+R+        +++S    +EY V+ A  +  +  S+D + ++ L C   T +GA
Sbjct: 119 LYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGA 178

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
               A+V  G +VAV+G+G VG  A+  A+  GA+ II +D    K  K +  G T  +N
Sbjct: 179 LKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVN 238

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG-VDTM 179
              E        ++ IT G GVD   E  G P     AL+  + G G+ +V+G+      
Sbjct: 239 AAKE---DAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGAT 294

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
             + +  L   G  + G ++G  + + DLP L+    + +     L+TH  KLEEI++A 
Sbjct: 295 AEIPITRLVRRGIKIIG-SYGA-RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAY 352

Query: 240 QLLKQ 244
           + L++
Sbjct: 353 ENLRK 357

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  134 bits (339), Expect = 2e-37
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 9/235 (3%)

Query: 23  TWSEYMVIDANYVVRVDP-SIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
            ++EY+ + A++ +   P  ID   A  L+    T +    + A V  G +V V+G G +
Sbjct: 122 GFAEYVRVPADFNLAKLPDGIDEEAA-ALTEPLATAYHGHAERAAVRPGGTVVVVGAGPI 180

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           GL A+  A++ GA+ +I +D++P + E  +  G  D +    E +      +  +T G G
Sbjct: 181 GLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDD--AGAEILELTGGRG 238

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG 201
            D   E  G P  L +ALE  + G G V+V+GV     +PL    +     TL+G+    
Sbjct: 239 ADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPS 297

Query: 202 IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL--KQPDCVKVLITI 254
              + D    LD   + +    +L+TH + L++  +A +L   ++ + +KV++  
Sbjct: 298 --GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350

Length = 350

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  123 bits (310), Expect = 3e-33
 Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 4/233 (1%)

Query: 23  TWSEYMVIDAN-YVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
            ++E++ +     +VRV  ++    A+  +C   T   A  +   V  G +V V G G +
Sbjct: 130 GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPL 189

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           GL AV  A++ GA ++I ID +P + E    FG    I+ D+ P+     +V+ IT G G
Sbjct: 190 GLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRG 249

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIG-VGVDTMVPLNVIALACGGRTLKGTTFG 200
            D   E +G P+ + E LE  + G G  +++G V     VPL+   +     T+ G    
Sbjct: 250 ADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNY 308

Query: 201 GIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 253
                      L++ +   F   +L+TH   LE+I++A++L +    +KV+I 
Sbjct: 309 DPSHLYRAVRFLERTQ-DRFPFAELVTHRYPLEDINEALELAESGTALKVVID 360

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  121 bits (306), Expect = 9e-33
 Identities = 81/270 (30%), Positives = 119/270 (44%), Gaps = 30/270 (11%)

Query: 3   DGTSRMSVRGQKLYHIFSCST----WSEYMVID---ANYV---------VRVDPSIDLSH 46
            G  R   RG    +   C      W     ID   A YV          ++   +    
Sbjct: 90  CGRCRFCRRG----YHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDED 145

Query: 47  ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWK 106
           A  LS    TGF  A + A ++ GS+VAV+G G VGL AV GAR+ GAA+II +D NP +
Sbjct: 146 ALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPER 204

Query: 107 KEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 166
            +  +  G TD INP +     I E +  +T G GVD   E  G      +A++  + G 
Sbjct: 205 LDLAKEAGATDIINPKNGD---IVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG- 260

Query: 167 GKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLL 226
           G +  +GV         +        T K    G +  ++ +P LLD  +  +    +L+
Sbjct: 261 GTIANVGVYGKPDPLPLLGEWFGKNLTFKT---GLVPVRARMPELLDLIEEGKIDPSKLI 317

Query: 227 THHVKLEEIDKAIQLLKQ--PDCVKVLITI 254
           TH   L++I KA +L       C+KV+I  
Sbjct: 318 THRFPLDDILKAYRLFDNKPDGCIKVVIRP 347

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  118 bits (298), Expect = 3e-32
 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 9/191 (4%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVG 82
            ++EY+V+ A+ +V +   + L  A+ L     T + A  +   ++ G +V VLG G VG
Sbjct: 88  GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVG 147

Query: 83  LGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
           L A   A+  G A++I  D++  K E  +  G    I+  +E      E    +T G G 
Sbjct: 148 LLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEED----LEEELRLTGGGGA 202

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI 202
           D   +  G P  L++AL   + G G+++V+G         ++  L     T+ G+T G  
Sbjct: 203 DVVIDAVGGPETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGG-- 259

Query: 203 KTKSDLPILLD 213
            T+ D    LD
Sbjct: 260 -TREDFEEALD 269

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  118 bits (297), Expect = 5e-31
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 30/241 (12%)

Query: 36  VRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAA 95
            ++   +    A FLS    TG+ AA + AEV+ G +VAV G G VGL A   A++ GA 
Sbjct: 152 FKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAE 210

Query: 96  KIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV---- 151
           ++I ID+ P + E   +    + IN ++  +  + E ++ +T G G D C +  G+    
Sbjct: 211 RVIAIDRVPERLEMARSHLGAETINFEEVDD--VVEALRELTGGRGPDVCIDAVGMEAHG 268

Query: 152 -----------------PSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTL 194
                            P  L EA++  + G G V +IGV   T+    + A    G TL
Sbjct: 269 SPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSIIGVYGGTVNKFPIGAAMNKGLTL 327

Query: 195 KGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL--KQPDCVKVLI 252
           +    G    +  LP LL+  ++ E     ++TH + LE+  +A ++   K+  C+KV++
Sbjct: 328 RM---GQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVL 384

Query: 253 T 253
            
Sbjct: 385 K 385

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  113 bits (286), Expect = 9e-30
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 19/242 (7%)

Query: 23  TWSEYMVI---DANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLG 79
            ++EY  +   DAN +  +   +    A  L    +TGF  A + A ++ G +VAV G+G
Sbjct: 119 VFAEYFHVNDADAN-LAPLPDGLTDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIG 176

Query: 80  TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG 139
            VGL AV GAR++GA +II +   P + E  + +G TD ++     N  + E +  +T G
Sbjct: 177 PVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK---NGDVVEQILKLTGG 233

Query: 140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIALACG--GRTLKG 196
            GVD      G      +AL+  K G G +  +   G D  +P+       G   +T+ G
Sbjct: 234 KGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTING 292

Query: 197 T-TFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHV-KLEEIDKAIQLL--KQPDCVKVLI 252
               GG   +  +  L    +       +LLTHH    ++I++A+ L+  K  D +K +I
Sbjct: 293 GLCPGG---RLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVI 349

Query: 253 TI 254
             
Sbjct: 350 IF 351

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  113 bits (285), Expect = 1e-29
 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 8/250 (3%)

Query: 3   DGTSRMSVR-GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAA 61
           + T +M++  G +L        ++E  ++ A    +VDP+ D + A  L CG   G GAA
Sbjct: 109 NATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAA 168

Query: 62  WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP 121
                V++G SVAV+G G VG  A+ GA + GA+KII +D +  K E    FG T  +N 
Sbjct: 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNS 228

Query: 122 -DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTM- 179
              +P ++I  L    T G G D   +  G P    +A     +  G V+++GV    M 
Sbjct: 229 SGTDPVEAIRAL----TGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMT 283

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           + L ++ +   G  LK + +G    + D P+L+D        L   +T  + L+++++A 
Sbjct: 284 LELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAF 343

Query: 240 QLLKQPDCVK 249
             +   D ++
Sbjct: 344 DKMHAGDVLR 353

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  108 bits (272), Expect = 7e-28
 Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 18/223 (8%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVG 82
            ++EY+V+ A YVV++   +DL+ A+ L C   T + A  K+A V+ G  VAV+G G +G
Sbjct: 121 GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLG 179

Query: 83  LGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
             AV  A+  G A++I I ++  K E  +  G    IN  D       E VK I      
Sbjct: 180 HMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDS---DALEAVKEI-----A 230

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIG-VGVDTMVPLNVIALACGGRTLKGTTFGG 201
           D   +  G P+ L  +L+  + G G ++++G  G   +  L    L     ++ G+  G 
Sbjct: 231 DAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT 288

Query: 202 IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
                DL   LD     + K    +   + L+EI++A + +++
Sbjct: 289 RA---DLEEALDFAAEGKIKPE--ILETIPLDEINEAYERMEK 326

Length = 339

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score =  100 bits (252), Expect = 6e-27
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 81  VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM 140
           VGL AV  A+  GAA++I +D++  K E  +  G    IN  DE      E V+ +T G 
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDE---DFVERVRELTGGR 58

Query: 141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG 200
           GVD   +C G P+ L +ALE  + G G+V+V+G+     VP  +  L     T+ G+  G
Sbjct: 59  GVDVVIDCVGAPATLEQALELLRPG-GRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGG 117

Query: 201 GIKT 204
           G + 
Sbjct: 118 GREE 121

Length = 131

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  105 bits (264), Expect = 1e-26
 Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 21/236 (8%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
           +EY+V+ A +V ++  ++ L  A+    L+  +      A + +  + G +  VLG G +
Sbjct: 130 AEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH-----AVRRSGFKPGDTALVLGAGPI 184

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           GL  +   +  GA+KII  + +  ++E  E  G T  ++P +     +   V+ +T G G
Sbjct: 185 GLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEV---DVVAEVRKLTGGGG 241

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIALACGGRTLKGTTFG 200
           VD  F+C GV + L  A++  +   G  + + +         N + L    +TL G+   
Sbjct: 242 VDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWEKPISFNPNDLVL--KEKTLTGSI-- 296

Query: 201 GIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEI-DKAIQ-LLKQPD-CVKVLIT 253
              T+ D   ++D   + +     L+T  + LE+I +K  + L+   +  VK+L++
Sbjct: 297 -CYTREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS 351

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  104 bits (263), Expect = 2e-26
 Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 21/238 (8%)

Query: 25  SEYMVIDANYVV-----RVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVL 76
           +EY+ + A  V      ++  ++    A+    L+C        A ++A ++ G +V V+
Sbjct: 118 AEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI-----NAQRKAGIKPGDTVLVI 172

Query: 77  GLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI 136
           G G +GL     A+  GA K+I  D N ++ E  +  G    I+  +E    + E V+ +
Sbjct: 173 GAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEE---DLVEKVREL 229

Query: 137 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIALACGGRTLK 195
           T G G D     TG P   ++ALE  + G G+++  G     + V ++   +     T+ 
Sbjct: 230 TDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITIT 288

Query: 196 GTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 253
           G+      +  D    L+   + +  +  L+TH   LE+I++A +L      +K++IT
Sbjct: 289 GSYAA---SPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLKIVIT 343

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  104 bits (262), Expect = 2e-26
 Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 12/229 (5%)

Query: 26  EYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGA 85
           EYM++    ++ +   +  +  + L CG  T + A  +   V    +V V+G G VGLGA
Sbjct: 121 EYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGA 179

Query: 86  VDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC 145
           +  AR  GA  +IG+D +P + E  +A G    IN   +  + I EL    T G G D  
Sbjct: 180 LMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIREL----TSGAGADVA 235

Query: 146 FECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV-PLNVIALACGGRTLKGTTFGGIKT 204
            EC+G  +    ALE  +   G+++++G G +  +   N +      RTL G+ +  +  
Sbjct: 236 IECSGNTAARRLALEAVRP-WGRLVLVGEGGELTIEVSNDLIRK--QRTLIGSWYFSVPD 292

Query: 205 KSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 253
             +    L +    + ++ +L+TH   L++  +A  L  Q +  KV+  
Sbjct: 293 MEECAEFLAR---HKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFV 338

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  104 bits (261), Expect = 2e-26
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 13/221 (5%)

Query: 24  WSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGL 83
           ++EY+V+ A  +V V   +  + A+  +    T + A  +  EV+ G +V V+GLG +GL
Sbjct: 120 FAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGL 179

Query: 84  GAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD 143
            AV  A+  G A +I +D    K E  +  G  + +N  D+  K       G     G D
Sbjct: 180 NAVQIAKAMG-AAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGG----GFD 234

Query: 144 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK 203
             F+  G      +A +  K G G+++V+G+G D  + +++  L      + G +FGG  
Sbjct: 235 VIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDK-LTVDLSDLIARELRIIG-SFGG-- 289

Query: 204 TKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
           T  DLP +LD     +            L+EI + ++ L +
Sbjct: 290 TPEDLPEVLDLIAKGKLD---PQVETRPLDEIPEVLERLHK 327

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  102 bits (257), Expect = 1e-25
 Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 16/235 (6%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLG 79
           T   Y+   A++  ++  ++ L   +    LS G       A + A V  G +V V G G
Sbjct: 118 TLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGV-----HACRRAGVRPGDTVLVFGAG 172

Query: 80  TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG 139
            +GL     A+  GA K++  D +P + E  +  G T  +N   E     +E +  +  G
Sbjct: 173 PIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGG 232

Query: 140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTF 199
            G D   ECTG  S +  A+  T+ G G V+++G+G    V L + A +     ++G   
Sbjct: 233 KGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKP-EVTLPLSAASLREIDIRGV-- 288

Query: 200 GGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP--DCVKVLI 252
              +  +  P  ++   + +  +  L+TH   LE+  +A +   +     +KV+I
Sbjct: 289 --FRYANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  100 bits (252), Expect = 6e-25
 Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 18/234 (7%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           +EY+V+ A+ ++  +  + L  A+ +      G  A  + A V  G +V V+G G +GLG
Sbjct: 118 AEYIVVPADALLVPE-GLSLDQAALVEP-LAIGAHAVRR-AGVTAGDTVLVVGAGPIGLG 174

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
            +  A+ +G A++I +D +  + E     G  D IN  DE        ++ +T G G D 
Sbjct: 175 VIQVAKARG-ARVIVVDIDDERLEFARELGADDTINVGDEDVA---ARLRELTDGEGADV 230

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK- 203
             + TG P+ + EA+E    G G+V+++G+     V              K  T  G + 
Sbjct: 231 VIDATGNPASMEEAVELVAHG-GRVVLVGL-SKGPVTFPDPEF-----HKKELTILGSRN 283

Query: 204 -TKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD--CVKVLITI 254
            T+ D P ++D  ++ +     L+TH    E++ +A  L + P    +KVLI  
Sbjct: 284 ATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =   99 bits (250), Expect = 9e-25
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 17/236 (7%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           +EY+ + A  ++++   +D   A+ +         A    A +  G +V V+G GT+GL 
Sbjct: 117 AEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVALHAVRL-AGITLGDTVVVIGAGTIGLL 174

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
           A+   ++ GA ++I +D +  K       G  D INP +E      E V+ +T G G D 
Sbjct: 175 AIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEED----VEKVRELTEGRGADL 230

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTM----VPLNVIALACGGRTLKGT--T 198
             E  G P+ + +AL   + G GKV+++G+    +         I       T++G+  +
Sbjct: 231 VIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILR--KELTIQGSWNS 287

Query: 199 FGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ--PDCVKVLI 252
           +       +    LD   + + K+  L+TH + LE+   A + L        KVL+
Sbjct: 288 YSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 97.0 bits (242), Expect = 5e-24
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 37/244 (15%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           +E +V+ AN +V +   +    A+  +    T        AE   G  VAV+GLG VGL 
Sbjct: 55  AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
           A   A+  GA +++G+D +  ++E  EA G  D +  D                G G D 
Sbjct: 113 AAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTA----------DEIGGRGADV 162

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRT-LKGTTF---- 199
             E +G PS L  AL   +   G+V+++G      + L       G     K        
Sbjct: 163 VIEASGSPSALETALRLLRDR-GRVVLVGWYGLKPLLL-------GEEFHFKRLPIRSSQ 214

Query: 200 -GGIKTKSDLPILLDKCKNKEF--------KLHQLLTHHVKLEEIDKAIQLLKQ--PDCV 248
             GI  + D P    + +N E         +L  L+TH V  E+  +A +LL +  P+C+
Sbjct: 215 VYGI-GRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECL 273

Query: 249 KVLI 252
           KV++
Sbjct: 274 KVVL 277

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 91.9 bits (229), Expect = 8e-22
 Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 13/219 (5%)

Query: 23  TWSEYM-VIDA-NYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGT 80
           T +EY+ +  A N + ++   +D   A  LS    TG+       +V+ G +VA++G G 
Sbjct: 118 TQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGP 177

Query: 81  VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM 140
           VGL A+  A++   +KII +D +  + E  +  G T  +N          E V  +T G 
Sbjct: 178 VGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKG---DAIEQVLELTDGR 234

Query: 141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIALACGGRTLKGTTF 199
           GVD   E  G+P+      E    G G +  +GV G    + L  + +    + +  TT 
Sbjct: 235 GVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGKPVDLHLEKLWI----KNITITT- 288

Query: 200 GGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKA 238
            G+   +  P+LL    + +    +L+TH  KL EI+KA
Sbjct: 289 -GLVDTNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKA 326

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 86.9 bits (216), Expect = 7e-20
 Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 26/238 (10%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVE--KGSSVAVLGLGTVG 82
           +EY+V+    + + D  I    AS          G A          G SV + G G +G
Sbjct: 122 AEYVVVPEENLWKNDKDIPPEIASIQE-----PLGNAVHTVLAGDVSGKSVLITGCGPIG 176

Query: 83  LGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
           L A+  A+  GA+ +I  D NP++ E  +  G    INP +E        VK +T G GV
Sbjct: 177 LMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVV----EVKSVTDGTGV 232

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI 202
           D   E +G P  + + L+    G G+V ++G+     V +++  L       KG T  GI
Sbjct: 233 DVVLEMSGNPKAIEQGLKALTPG-GRVSILGL-PPGPVDIDLNNLV----IFKGLTVQGI 286

Query: 203 ------KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 254
                 +T   +  LL   K+ +  L  ++TH + LE+ ++A +L++   C KV++  
Sbjct: 287 TGRKMFETWYQVSALL---KSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP 341

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 84.7 bits (210), Expect = 4e-19
 Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 13/201 (6%)

Query: 56  TGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM 115
           TG  AA   A V  GS+V V+G G VGL AV  A+  GA +II + ++  ++     FG 
Sbjct: 156 TGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGA 214

Query: 116 TDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG-V 174
           TD +    E  +     V+ +T G+G D   EC G    + +A+   + G      +G V
Sbjct: 215 TDIV---AERGEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGG----RVGYV 267

Query: 175 GVDTM-VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLE 233
           GV    V L+V  L      L G   G    +  LP LLD          ++    + L+
Sbjct: 268 GVPHGGVELDVRELFFRNVGLAG---GPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLD 324

Query: 234 EIDKAIQLLKQPDCVKVLITI 254
           E+ +  + + +   +KVL+  
Sbjct: 325 EVAEGYRAMDERRAIKVLLRP 345

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 9/219 (4%)

Query: 35  VVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA 94
           ++++   +    A  L     TG+  A K A+V  G +VAV+G G VGL AV  A++ GA
Sbjct: 134 LLKLPDGLSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGA 192

Query: 95  AKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL 154
           A++  +D  P + E+  A G  + IN +D       E V+  T G G D   E  G  + 
Sbjct: 193 ARVFAVDPVPERLERAAALG-AEPINFEDAEPV---ERVREATEGRGADVVLEAVGGAAA 248

Query: 155 LSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDK 214
           L  A +  + G G +  +GV      P   +       TL+   FG    +S  P LL  
Sbjct: 249 LDLAFDLVRPG-GVISSVGVHTAEEFPFPGLDAYNKNLTLR---FGRCPVRSLFPELLPL 304

Query: 215 CKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 253
            ++    L  L+ H + LEE  +A +L  +   +KV++ 
Sbjct: 305 LESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD 343

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 83.7 bits (208), Expect = 7e-19
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 51/248 (20%)

Query: 26  EYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAW--KEAEVEKGSSVAVLGLGT 80
           EY+V+ A  V ++  ++    A+    LSC       A        ++ G SV V G G 
Sbjct: 118 EYVVVPAKQVYKIPDNLSFEEAALAEPLSC-------AVHGLDLLGIKPGDSVLVFGAGP 170

Query: 81  VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM 140
           +GL      ++ GA+++   + N  K E  +  G T+ ++P  E  ++  E         
Sbjct: 171 IGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPY----- 225

Query: 141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG-VDTMVPLN--------------VI 185
           G D   E TGVP  L +A+E  + G G V+V GV   D  V ++               I
Sbjct: 226 GFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFI 284

Query: 186 ALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP 245
                 R +                LL+  K     +  L++H + LEE+ +A++ ++  
Sbjct: 285 NPYTFPRAIA---------------LLESGK---IDVKGLVSHRLPLEEVPEALEGMRSG 326

Query: 246 DCVKVLIT 253
             +KV++ 
Sbjct: 327 GALKVVVV 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 81.5 bits (202), Expect = 6e-18
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 14/218 (6%)

Query: 23  TWSEYMVI---DANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLG 79
           +++EY+ +   D N +VR+   +D   A+ L C F T F A   +A V+ G  VAV G G
Sbjct: 117 SFAEYVAVPRADVN-LVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCG 175

Query: 80  TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG 139
            VGL AV  A   G A++I +D +  K E     G    +N  +  +  ++  V+ +T G
Sbjct: 176 GVGLSAVMIASALG-ARVIAVDIDDDKLELARELGAVATVNASEVED--VAAAVRDLTGG 232

Query: 140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDTMVPLNVIALACGGRTLKGT 197
            G     +  G+P     ++ + +   G+ + +G+  G +  V L +  +      + G 
Sbjct: 233 -GAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVG- 289

Query: 198 TFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEI 235
           + G          +L    + +     L+   + L+E 
Sbjct: 290 SHG--MPAHRYDAMLALIASGKLDPEPLVGRTISLDEA 325

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 78.6 bits (194), Expect = 5e-17
 Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 16/238 (6%)

Query: 22  STWSEYMVIDANYVVRVDPSID--LSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLG 79
             ++EY + DA++ V +   +D        L C         ++   +  G +VAV+G G
Sbjct: 85  GAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN-----VFRRGWIRAGKTVAVIGAG 139

Query: 80  TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG 139
            +GL  +  A   GA ++I ID+ P +       G T+ +  D E   +I E V+ +T G
Sbjct: 140 FIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSE---AIVERVRELTGG 196

Query: 140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTF 199
            G D   E  G    L  A E      G++++ G   D   P+        G  L     
Sbjct: 197 AGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVE 255

Query: 200 G--GIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ-LLKQPD-CVKVLIT 253
               I     +   +    +    L  LLTH   LEE+  A +   ++PD  +K +I 
Sbjct: 256 RDPRIGL-EGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVIV 312

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           +EYM++    ++RV   + +  A+ L+     G  A  + A +  G    V+G G +GL 
Sbjct: 119 AEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAVRR-ARLTPGEVALVIGCGPIGLA 176

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
            +   + +G   I+  D +P ++    A G    ++P  +   +          G     
Sbjct: 177 VIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAV 236

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTT--FGGI 202
            FEC G P L+ + +E    G G+++V+GV    M   N+          K  T  F   
Sbjct: 237 IFECVGAPGLIQQIIEGAPPG-GRIVVVGV---CMESDNIEPALA---IRKELTLQFSLG 289

Query: 203 KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI 252
            T  +    LD     +  +  ++T  V L+ +  A + L+ P+   K+L+
Sbjct: 290 YTPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILV 340

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 76.0 bits (188), Expect = 4e-16
 Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 25/229 (10%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVG 82
           T++EY + DA YV  +   +    A+ L C   T + A  K+A ++ G  V + G G  G
Sbjct: 120 TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL-KKAGLKPGDWVVISGAGG-G 177

Query: 83  LG--AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM 140
           LG   V  A+  G  ++I ID    K E  +  G   F++          E VK +T G 
Sbjct: 178 LGHLGVQYAKAMG-LRVIAIDVGDEKLELAKELGADAFVDFKKS---DDVEAVKELTGGG 233

Query: 141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG 200
           G           +   +AL+  + G G ++ +G+     +PL+   L   G T+ G+  G
Sbjct: 234 GAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVG 292

Query: 201 GIKTKSDLPILLD-----KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
              T+ DL   L+     K K    ++       V LE++++  + +++
Sbjct: 293 ---TRQDLQEALEFAARGKVK-PHIQV-------VPLEDLNEVFEKMEE 330

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 75.5 bits (186), Expect = 7e-16
 Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 15/239 (6%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LGTV 81
            ++EY+V+ A+++V +   +    A+ L     T + A +  A ++ G +V V G  G V
Sbjct: 96  GYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGV 155

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           G  A+  A+  GA  +  +     K E  +  G    IN  +E      E V+ +T G G
Sbjct: 156 GSAAIQLAKALGATVVAVVSS-SEKLELLKELGADHVINYREE---DFVEQVRELTGGKG 211

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIALACGGRTLKGTTFG 200
           VD   +  G     + +L     G G+++ IG       VPLN++ L     TL+G T G
Sbjct: 212 VDVVLDTVG-GDTFAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLG 269

Query: 201 GIKTKSDLPI---LLDKCKNKEFKLHQLLTHHVKLEEIDKAI-QLLKQPDCV-KVLITI 254
               ++       L D       KL  ++     L E   A   LL +     KV++ +
Sbjct: 270 SRDPEALAEALAELFDLL--ASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 14/237 (5%)

Query: 25  SEYMVIDANYVVRVDPSIDL--SHASFLSCGFTTGFGAAW-----KEAEVEKGSSVAVLG 77
           +EY+ ++A Y   ++   ++     +F +         A+     +      G+ V V G
Sbjct: 152 AEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYG 211

Query: 78  LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT 137
            G +GL A+  A+  GA+K+I  + +  ++   +  G     NP    +    E V  +T
Sbjct: 212 AGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVT 271

Query: 138 HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT 197
            G G D   E  G P      +E +    GK++ IG    T VPL++  L       +  
Sbjct: 272 KGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRA-ATTVPLHLEVLQVR----RAQ 326

Query: 198 TFG--GIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 252
             G  G       P ++    + +  + +++T    LE I +AI+   +    K+ I
Sbjct: 327 IVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI 383

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 69  KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS 128
           KG  V V+G G +GL A   A   GAA+++  D +P ++E   +FG T    P+      
Sbjct: 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVL---- 175

Query: 129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALA 188
            +E   G+ +G GVD   E +G  + +   LE+  VG   V+   V     V L+   + 
Sbjct: 176 -AERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVV 234

Query: 189 CGGRTLKG 196
               T++G
Sbjct: 235 RRWLTIRG 242

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 18/222 (8%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEV-EKGSSVAVLGLGTVGL 83
           +EY+++ +  +V++   +D   A+ L+    T + A  K     + GS+V V+G+G  GL
Sbjct: 122 AEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVG--GL 179

Query: 84  G--AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           G  AV   R    A +I +D++    +  E  G    +N  D+      E V+ +T G G
Sbjct: 180 GHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDV----VEEVRELTGGRG 235

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG 201
            D   +  G    L+ A +    G G+ +++G G      L    L     ++ G+ +G 
Sbjct: 236 ADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH--GRLPTSDLVPTEISVIGSLWG- 291

Query: 202 IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLK 243
             T+++L  ++   ++ + K+         LE+ ++A+  L+
Sbjct: 292 --TRAELVEVVALAESGKVKVE---ITKFPLEDANEALDRLR 328

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 28/238 (11%)

Query: 25  SEYMVIDANYVV-RVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGT 80
           +EYM      +V +V   I    A     L+C        A   A ++    V + G G 
Sbjct: 131 AEYMRFPKEAIVHKVPDDIPPEDAILIEPLACAL-----HAVDRANIKFDDVVVLAGAGP 185

Query: 81  VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM 140
           +GLG +  AR++   K+I +D    +      FG    +NP   P   + E +K +T G 
Sbjct: 186 LGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNP---PEVDVVEKIKELTGGY 242

Query: 141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIA----LACGGRTLK 195
           G D   E TG PS + + L   +   G+ +   V G    V  ++I     L   G  L 
Sbjct: 243 GCDIYIEATGHPSAVEQGLNMIR-KLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLG 301

Query: 196 GTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP-DCVKVLI 252
              +         PI +D   +       ++TH   LE+ ++A +L+ +  D +KV++
Sbjct: 302 PYCY---------PIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 69.7 bits (171), Expect = 7e-14
 Identities = 66/254 (25%), Positives = 113/254 (44%), Gaps = 30/254 (11%)

Query: 1   MLDGTSRMSVRGQKLY----HIFSCST---WSEYMVIDANYVVRVDPSIDLSHASFLSCG 53
           + DGT  M + G ++      I    +   ++EY+V+    + ++  SI    A+ L   
Sbjct: 88  VFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVA 147

Query: 54  FTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA 112
             T + A  K A +  G +V V G  G  G+ AV  A+M G A++I + +  W KE    
Sbjct: 148 ALTAYHAL-KTAGLGPGETVVVFGASGNTGIFAVQLAKMMG-AEVIAVSRKDWLKE---- 201

Query: 113 FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 172
           FG  + ++ D+     + E VK IT  M  D      G  S    +L     G G+++  
Sbjct: 202 FGADEVVDYDE-----VEEKVKEIT-KM-ADVVINSLG-SSFWDLSLSVLGRG-GRLVTF 252

Query: 173 GVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKL 232
           G      V L++  L     ++ G+T G   T+ +L  L+   K+ + K+ +      KL
Sbjct: 253 GTLTGGEVKLDLSDLYSKQISIIGSTGG---TRKELLELVKIAKDLKVKVWKTF----KL 305

Query: 233 EEIDKAIQLLKQPD 246
           EE  +A++ L   +
Sbjct: 306 EEAKEALKELFSKE 319

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 13/176 (7%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
           +EY+++    +  +  ++ L  A+    L+        A  + + +  G +V V G G +
Sbjct: 121 AEYVLVPEESLHELPENLSLEAAALTEPLAVAVH----AVAERSGIRPGDTVVVFGPGPI 176

Query: 82  GLGAVDGARMQGAAKII-GIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM 140
           GL A   A++QGA  ++ G +K+  + +  +  G    +N  +E    ++ELV  IT G 
Sbjct: 177 GLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADA-VNGGEE---DLAELVNEITDGD 232

Query: 141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKG 196
           G D   EC+G    L +ALE  + G G+++ +G+       ++V  +     ++ G
Sbjct: 233 GADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGPLAASIDVERIIQKELSVIG 287

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 19/233 (8%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LGTV 81
            ++EY+ +    +V++  ++    A+  +C   T   A  K A V+KG +V V G  G V
Sbjct: 117 GFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRAGVKKGDTVLVTGAGGGV 175

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           G+ A+  A+  G A++I + ++P K +  +  G    I+         SE VK +    G
Sbjct: 176 GIHAIQLAKALG-ARVIAVTRSPEKLKILKELGADYVID-----GSKFSEDVKKLG---G 226

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG 201
            D   E  G P+ + E+L +   G G++++IG       PL    L      + G+    
Sbjct: 227 ADVVIELVGSPT-IEESLRSLNKG-GRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISA- 283

Query: 202 IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCV-KVLIT 253
             TK+D+   L   K  + K   ++   V LE+I++A++ LK    V ++++ 
Sbjct: 284 --TKADVEEALKLVKEGKIK--PVIDRVVSLEDINEALEDLKSGKVVGRIVLK 332

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 67.2 bits (164), Expect = 6e-13
 Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 15/232 (6%)

Query: 24  WSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEK--GSSVAVLGLGTV 81
           ++EY V+ A  + +   SI   +A+          G A          G SV V G G +
Sbjct: 119 FAEYAVVPAQNIWKNPKSIPPEYATIQE-----PLGNAVHTVLAGPISGKSVLVTGAGPI 173

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDE-PNKSISELVKGITHGM 140
           GL A+  A+  GA  +I  D N ++ E  +  G T  +NP  E   K +++L    T G 
Sbjct: 174 GLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADL----TDGE 229

Query: 141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG 200
           GVD   E +G P  L + L+    G G+V ++G+    +       +   G T+ G T  
Sbjct: 230 GVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGKVTIDFTNKVIFKGLTIYGIT-- 286

Query: 201 GIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 252
           G         +    ++ +  L  ++TH  K ++ +K  +L++     KV++
Sbjct: 287 GRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVIL 338

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 13/180 (7%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           +EY+V+    +VR    +    A+ L C   T + A +    ++ G +V V G G V L 
Sbjct: 116 AEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLF 175

Query: 85  AVDGARMQGAAKII--GIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
           A+  A+  GA  I     D+   K E+ +A G    IN    P+    E V  +T G GV
Sbjct: 176 ALQFAKAAGARVIATSSSDE---KLERAKALGADHVINYRTTPD--WGEEVLKLTGGRGV 230

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDTMVPLNVIALACGGRTLKGTTFG 200
           D+  E  G P  L+++++    G G + +IG   G +   P+ ++ L   G TL+G   G
Sbjct: 231 DHVVEVGG-PGTLAQSIKAVAPG-GVISLIGFLSGFEA--PVLLLPLLTKGATLRGIAVG 286

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 59/243 (24%), Positives = 94/243 (38%), Gaps = 39/243 (16%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
            EY+V+DA+  V +   + L  A+    L+         A   A    G  V V G G +
Sbjct: 123 REYLVVDASQCVPLPDGLSLRRAALAEPLAVAL-----HAVNRAGDLAGKRVLVTGAGPI 177

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           G   V  AR  GAA+I+  D          A G  + +N   +P      L         
Sbjct: 178 GALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDP------LAAYAADKGD 231

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTM-VPLNVIALACGGR--TLKGT- 197
            D  FE +G P+ L+ AL   + G G V+ +G+    + +PLN +      +   L+G+ 
Sbjct: 232 FDVVFEASGAPAALASALRVVRPG-GTVVQVGMLGGPVPLPLNALV----AKELDLRGSF 286

Query: 198 TFGG-----IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLK-QPDCVKVL 251
            F       ++  +   I +            L+T    LEE  +A  L   +   VKV 
Sbjct: 287 RFDDEFAEAVRLLAAGRIDVR----------PLITAVFPLEEAAEAFALAADRTRSVKVQ 336

Query: 252 ITI 254
           ++ 
Sbjct: 337 LSF 339

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 64.5 bits (157), Expect = 5e-12
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 13/164 (7%)

Query: 24  WSEYMVIDANYVVRVDPS------IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG 77
           ++ ++V+ A  +  VD +      + L H S ++   TT + AA + A ++KG  V V+G
Sbjct: 116 FASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQ-AGLKKGDLVIVIG 174

Query: 78  LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT 137
            G VG   V  A+  GAA ++ ID +P K E  + FG    +NP D+  + + +L+K   
Sbjct: 175 AGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFA 233

Query: 138 HGMGVDY----CFECTGVPSLLSEALETTKVGKGKVIVIGVGVD 177
              G+       FEC+G       AL     G G ++V+G  + 
Sbjct: 234 KARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMA 276

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 16/181 (8%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           ++++V+D  +V ++   +D + A+ L C   T + +  K   V  G  V V+G+G  GLG
Sbjct: 126 ADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVY-SPLKRNGVGPGKRVGVVGIG--GLG 182

Query: 85  --AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
             AV  A+  G A++    ++P KKE     G  +FI   D                  +
Sbjct: 183 HLAVKFAKALG-AEVTAFSRSPSKKEDALKLGADEFIATKDPEAMK--------KAAGSL 233

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI 202
           D   +       L   L   K G G ++++G   + + P+    L  G +++ G+  GG 
Sbjct: 234 DLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEEPL-PVPPFPLIFGRKSVAGSLIGGR 291

Query: 203 K 203
           K
Sbjct: 292 K 292

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 29/225 (12%)

Query: 49  FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKE 108
            LS  F TG+    + A V+ G +VAV G G VGL A   A ++GA+++  +D  P + +
Sbjct: 157 MLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLD 215

Query: 109 KGEAFGMT--DFINPDDEPNKSISELVKGITHGM---GVDYC-FECTG-----VPSL-LS 156
             E+ G    DF + D        E + G+  G     VD   +E         P+L L+
Sbjct: 216 LAESIGAIPIDFSDGDP------VEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLN 269

Query: 157 EALETTKVGKGKVIVIGV-------GVDTMVPLNVIALACGGRTLKGTTFG-GI-KTKSD 207
           + +  T+ G G + ++GV         D       ++   G    KG +FG G    K  
Sbjct: 270 QLIRVTRPG-GGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQAPVKKY 328

Query: 208 LPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 252
              L D       K   +++H + LE+  +A     +    KV+I
Sbjct: 329 NRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRLETKVVI 373

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 23/234 (9%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGL 83
           +EY  +    +V+V P++    A  + C     +    + A V+KG +V V G  G VG+
Sbjct: 119 AEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RRAGVKKGETVLVTGAGGGVGI 177

Query: 84  GAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD 143
            A+  A+  G AK+I +  +  K +    +   D++          SE VK I    G D
Sbjct: 178 HAIQVAKALG-AKVIAVTSSESKAKIVSKYA--DYV----IVGSKFSEEVKKIG---GAD 227

Query: 144 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI- 202
              E  G P+ L E+L +  +G GK+I IG  VD   P    +L  G   LK     G  
Sbjct: 228 IVIETVGTPT-LEESLRSLNMG-GKIIQIG-NVD---PSPTYSLRLGYIILKDIEIIGHI 281

Query: 203 -KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCV-KVLITI 254
             TK D+   L      E K+  ++   V L EIDKA++ LK    + K+L+  
Sbjct: 282 SATKRDVEEALKLV--AEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP 333

Length = 334

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 41/240 (17%)

Query: 26  EYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEA---EVEKGSSVAVLGLGTVG 82
           EY+VI A  V ++   I    A+         FG A   A   ++  G  V + G G +G
Sbjct: 123 EYLVIPAFNVWKIPDDIPDDLAAIFD-----PFGNAVHTALSFDL-VGEDVLITGAGPIG 176

Query: 83  LGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
           + A   A+  GA  ++  D N ++ E     G T  +N   E    + +++  +    G 
Sbjct: 177 IMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKE---DLRDVMAELGMTEGF 233

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLN-VIALACGGRTLKGTTFG 200
           D   E +G PS   + L+    G G++ ++G+   D  +  N VI         KG T  
Sbjct: 234 DVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPGDMAIDWNKVI--------FKGLTIK 284

Query: 201 GI----------KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKV 250
           GI          K  + L   LD        L  ++TH   +++  K  + ++     KV
Sbjct: 285 GIYGREMFETWYKMSALLQSGLD--------LSPIITHRFPIDDFQKGFEAMRSGQSGKV 336

Length = 341

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 15/222 (6%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           +EY+++  +  +     +D + A+ L+C   T + A  K   +     V ++G G +GL 
Sbjct: 131 AEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLM 190

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDE-PNKSISELVKGITHGMGVD 143
           A+   +  G A II +D +  K E  +A G    +N  D    K I +   G     GVD
Sbjct: 191 ALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGG-----GVD 245

Query: 144 YCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIALACGGRTLKGTTFGGI 202
              +     +  S A +    G GK++++G+ G +  +PL ++ L     T++G+  G +
Sbjct: 246 AVIDFVNNSATASLAFDILAKG-GKLVLVGLFGGEATLPLPLLPL--RALTIQGSYVGSL 302

Query: 203 KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
           +   +L  L      K  KL  +      L +++ A+  LK 
Sbjct: 303 EELRELVALA-----KAGKLKPIPLTERPLSDVNDALDDLKA 339

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 17/182 (9%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           +EYMV DA Y V +   + L+ A+ L C   T + +A ++A    G  VAVLG+G +G  
Sbjct: 119 AEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVY-SALRDAGPRPGERVAVLGIGGLGHL 177

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
           AV  AR  G  + + I ++P K+E     G  + ++       S +EL +    G G D 
Sbjct: 178 AVQYARAMG-FETVAITRSPDKRELARKLGADEVVD-------SGAELDEQAAAG-GADV 228

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIGV---GVDTMVPLNVIALACGGRTLKGTTFGG 201
                   +    AL   + G G+++++G+      +     +I      +++ G+T GG
Sbjct: 229 ILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPDIFPLIM---KRQSIAGSTHGG 284

Query: 202 IK 203
             
Sbjct: 285 RA 286

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 18/260 (6%)

Query: 3   DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW 62
            G S + V GQ++  +    TW EY+V  A+ ++ V  SI    A+ L     T +    
Sbjct: 73  SGVSGLLV-GQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLT 131

Query: 63  KEAEVEKGSSVAVLGLG-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP 121
           +  ++  G  V        VG   +  A++ G  K I + +   + E+ +A G  + I+ 
Sbjct: 132 EYLKLPPGDWVIQNAANSAVGRMLIQLAKLLG-FKTINVVRRDEQVEELKALGADEVIDS 190

Query: 122 DDEPNKSISELVKGITHGMGVDYCFECTG--VPSLLSEALETTKVGKGKVIVIGVGVDTM 179
             E    +++ VK  T G G     +  G    + L+ +L       G ++  G+     
Sbjct: 191 SPE---DLAQRVKEATGGAGARLALDAVGGESATRLARSLRPG----GTLVNYGLLSGEP 243

Query: 180 VPLNVIALACGGRTLKG---TTFGGIKTKSDLPILLDKCKNK--EFKLHQLLTHHVKLEE 234
           VP           T++G     +    TK        +         L   +     LE+
Sbjct: 244 VPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLED 303

Query: 235 IDKAIQLLKQPDCV-KVLIT 253
            ++A+   +QP    KVL+T
Sbjct: 304 FEEAVAAAEQPGRGGKVLLT 323

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 55.2 bits (134), Expect = 6e-09
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 26  EYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLG 84
           E +V+ A  V  +   +    A+ L   + T + A  + A ++ G +V VLG  G VGL 
Sbjct: 96  EEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLA 155

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
           AV  A+  G A++I    +  K     A G    I+  D     + E VK +T G GVD 
Sbjct: 156 AVQLAKALG-ARVIAAASSEEKLALARALGADHVIDYRDPD---LRERVKALTGGRGVDV 211

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIG 173
            ++  G   +   +L +   G G+++VIG
Sbjct: 212 VYDPVGGD-VFEASLRSLAWG-GRLLVIG 238

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           +EY+V+    +  +   + +   +F+    T G   A+  A+  +G +V ++G GT+GL 
Sbjct: 118 AEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGL-HAFHLAQGCEGKNVIIIGAGTIGLL 175

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
           A+  A   GA  +  ID N  K    ++ G     N  +     I  +++ +     +  
Sbjct: 176 AIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLI-- 233

Query: 145 CFECTGVPSLLSEALE 160
             E  GVP  +  A+E
Sbjct: 234 -LETAGVPQTVELAIE 248

Length = 347

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A + A +   ++V V+G G +GL  +  AR  GA +I+ +D +  +    +  G  + + 
Sbjct: 173 ACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVL 232

Query: 121 PDDEPNKSISELVKGITHGMG--VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDT 178
                    SE+ + I   MG  +D  F+C G    +S ALE T+ G GKV ++G+G + 
Sbjct: 233 VSTNIEDVESEVEE-IQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHNE 290

Query: 179 M-VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
           M VPL   A     R +     G  + ++  P+ L+  ++ +  +  L+TH     + +
Sbjct: 291 MTVPLTPAA----AREVD--VVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 343

Length = 364

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSC-GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGL 83
           +E  ++ A+Y V+V   +D + AS ++C G TT    A K + ++ G  +A+ G G +G 
Sbjct: 119 AEQCIVTADYAVKVPEGLDPAQASSITCAGVTTY--KAIKVSGIKPGQWIAIYGAGGLGN 176

Query: 84  GAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN--KSISELVKGITHGMG 141
            A+  A+    AK+I +D N  K    +  G    IN     +  K I E   G  H   
Sbjct: 177 LALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGA-HAAV 235

Query: 142 VDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG 200
           V      T V  +  ++A++  + G G+V+ +G+  ++M  L++  L   G  + G+  G
Sbjct: 236 V------TAVAKAAFNQAVDAVRAG-GRVVAVGLPPESM-DLSIPRLVLDGIEVVGSLVG 287

Query: 201 GIKTKSDL 208
              T+ DL
Sbjct: 288 ---TRQDL 292

Length = 338

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 6/163 (3%)

Query: 12  GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGS 71
           G ++  +     ++EY V    +V+ +        A+ +   F T +    K  +V+KG 
Sbjct: 83  GDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQ 142

Query: 72  SVAV-LGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSIS 130
           SV +  G   VG  A   A   GAA II    +  K +  +       I   DE   +  
Sbjct: 143 SVLIHAGASGVGTAAAQLAEKYGAATIITT-SSEEKVDFCKKLAAIILIRYPDEEGFAPK 201

Query: 131 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG 173
             VK +T   GV+   +C G  S LSE  E   V  GK IV G
Sbjct: 202 --VKKLTGEKGVNLVLDCVG-GSYLSETAEVLAV-DGKWIVYG 240

Length = 334

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 47/233 (20%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           +EYMV D  +   +    D   A+ L C    G+  A K A ++ G  + + G G     
Sbjct: 124 AEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYR-ALKLAGLKPGQRLGLYGFGASAHL 182

Query: 85  AVDGARMQGAAKIIGIDKNPWK----KEKG--EAFGMTDFINPDDEPNKSISELVKGITH 138
           A+  AR QG A++    ++       +E G   A    D   P +  + +I      I  
Sbjct: 183 ALQIARYQG-AEVFAFTRSGEHQELARELGADWAGDSDD--LPPEPLDAAI------IF- 232

Query: 139 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTT 198
                       V +L+  AL   K G G+V++ G+ +  +   +   L  G +T++   
Sbjct: 233 ----------APVGALVPAALRAVKKG-GRVVLAGIHMSDIPAFD-YELLWGEKTIRSVA 280

Query: 199 FGGIKTKSD----LPILLDKCKNKEFKLHQLLTHH--VKLEEIDKAIQLLKQP 245
                T+ D    L +        E  +           LEE ++A+Q LK+ 
Sbjct: 281 NL---TRQDGEEFLKLAA------EIPIK---PEVETYPLEEANEALQDLKEG 321

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 22/156 (14%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHA-SFLSCGFTTGFGAAW----KEAEVEKGSSVAVLG 77
            ++EY+V+ A+ +     ++    A +    G T     AW    +   ++ G +V + G
Sbjct: 98  AYAEYVVVPADELALKPANLSFEEAAALPLAGLT-----AWQALFELGGLKAGQTVLIHG 152

Query: 78  -LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI 136
             G VG  AV  A+ +G A++I         +   + G  + I+             +  
Sbjct: 153 AAGGVGSFAVQLAKARG-ARVIATASAA-NADFLRSLGADEVIDYTK-------GDFERA 203

Query: 137 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 172
               GVD   +  G  + L+ +L   K G G+++ I
Sbjct: 204 AAPGGVDAVLDTVGGET-LARSLALVKPG-GRLVSI 237

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A  +A   +G  V V G+G +G   V   +  GAA+I+  D +P         G    +N
Sbjct: 161 AAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVN 220

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG 175
           P ++      +L          D  FE +G PS ++  LE T+  KG ++ +G+G
Sbjct: 221 PQND------DLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTR-AKGVMVQVGMG 268

Length = 343

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 7/181 (3%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTV 81
           T++EY ++ A  VV++   +    A+ L   + T +GA  + A +  G SV +     +V
Sbjct: 98  TYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSV 157

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           GL A+  A   G A +I   +   K++   A G    I  D+E    +   V  IT G G
Sbjct: 158 GLAAIQIANAAG-ATVIATTRTSEKRDALLALGAAHVIVTDEED---LVAEVLRITGGKG 213

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG 201
           VD  F+  G P   ++  +    G G ++V G       P  + A      T +G +   
Sbjct: 214 VDVVFDPVGGPQ-FAKLADALAPG-GTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDE 271

Query: 202 I 202
           I
Sbjct: 272 I 272

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 54/195 (27%)

Query: 24  WSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGL 83
           ++EYM+  A  + R+   +D + A+ L C   T F A  + +  + G  VAV G+G  GL
Sbjct: 119 YAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNAL-RNSGAKPGDLVAVQGIG--GL 175

Query: 84  G--AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDE----------------- 124
           G  AV  A   G  + + I +   K +     G   +I+   E                 
Sbjct: 176 GHLAVQYAAKMG-FRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILA 234

Query: 125 --PN-KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVP 181
             PN K+IS LV G+                              GK++++G   +  V 
Sbjct: 235 TAPNAKAISALVGGLAPR---------------------------GKLLILGAAGEP-VA 266

Query: 182 LNVIALACGGRTLKG 196
           ++ + L  G +++ G
Sbjct: 267 VSPLQLIMGRKSIHG 281

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 24  WSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVG 82
            +EY+ +DA Y+V V   +D + A  L   + T +    + A+V  G  V + G  G VG
Sbjct: 94  NAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVG 153

Query: 83  LGAVDGARMQGAAKIIG 99
              ++ A + G A++ G
Sbjct: 154 QALLELALLAG-AEVYG 169

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 18/168 (10%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSH-ASFLSCGFTTGFGAAWK----EAEVEKGSSVAVLG 77
           T +EY+V+ A+ +V +   +     A+      T     A++     A  + G +V V G
Sbjct: 98  TAAEYVVVPADQLVPLPDGVSFEQGAALGIPALT-----AYRALFHRAGAKAGETVLVHG 152

Query: 78  -LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI 136
             G VG  AV  AR  G A++I    +    E     G     N   E    +++ +   
Sbjct: 153 GSGAVGHAAVQLARWAG-ARVIATASSAEGAELVRQAGADAVFNYRAE---DLADRILAA 208

Query: 137 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG-VGVDTMVPLN 183
           T G GVD   E     + L++ L+    G G+++V G  G+   +P+N
Sbjct: 209 TAGQGVDVIIEVLANVN-LAKDLDVLAPG-GRIVVYGSGGLRGTIPIN 254

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 12/129 (9%)

Query: 50  LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK 109
           LS  F TG+  A   A V  GS+V + G G VGL A   A++ GAA +I  D NP +  +
Sbjct: 167 LSDIFPTGYHGAVT-AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQ 225

Query: 110 GEAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYC-FECTG--------VPS-LLSEA 158
             +FG  T  ++ D    + I +++        VD   FE  G         P+ +L+  
Sbjct: 226 ARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSL 285

Query: 159 LETTKVGKG 167
           +E T+VG  
Sbjct: 286 MEVTRVGGA 294

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 15/178 (8%)

Query: 26  EYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGT--VGL 83
           EY+V+ A  ++ V   + L  A+ L   F T +   ++   ++ G +V + G G   VG 
Sbjct: 96  EYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHG-GASGVGT 154

Query: 84  GAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD 143
            A+  A+  GA ++I    +  K E   A G    IN   E     +E VK  T G GVD
Sbjct: 155 AAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYRTE---DFAEEVKEATGGRGVD 210

Query: 144 YCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDTMVPLNVIALACGGR-TLKGTT 198
              +  G    L+  L       G++++IG+  G    + L  +      R TL G+T
Sbjct: 211 VILDMVG-GDYLARNLRALAPD-GRLVLIGLLGGAKAELDLAPL---LRKRLTLTGST 263

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 18/224 (8%)

Query: 24  WSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGL 83
           +S+ +V+D ++V+R   ++ L   + L C   T +         E G  + V GLG +G 
Sbjct: 138 YSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197

Query: 84  GAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
            AV   +  G  K+  I  +  K+++     G   F+   D P K     +K     M  
Sbjct: 198 VAVKIGKAFG-LKVTVISSSSNKEDEAINRLGADSFLVSTD-PEK-----MKAAIGTM-- 248

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI 202
           DY  +       L   L   KV  GK+I +G+  +  + L +  L  G + + G+  GGI
Sbjct: 249 DYIIDTVSAVHALGPLLGLLKV-NGKLITLGLP-EKPLELPIFPLVLGRKLVGGSDIGGI 306

Query: 203 KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD 246
           K   +   +LD C          L   ++++EI+ A++ L + D
Sbjct: 307 KETQE---MLDFCAKHNITADIEL---IRMDEINTAMERLAKSD 344

Length = 360

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 12/87 (13%)

Query: 21  CSTWSEYMVIDANYVVRVDPSIDL---SHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG 77
           C +W +    +   ++ +DP +     +H        TT     W E    K  +V  +G
Sbjct: 115 CPSWRDVPSDEDALIIMLDPGLAFGTGTHP-------TTSLCLEWLEDLDLKDKNVIDVG 167

Query: 78  LGTVGLGAVDGARMQGAAKIIGIDKNP 104
            G+  L     A   GAAK++GID +P
Sbjct: 168 CGSGILSI--AALKLGAAKVVGIDIDP 192

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|176253 cd08293, PTGR2, Prostaglandin reductase

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHAS-FLSC----GFTTGFGAAWKEAEVEKGSSVAVLG 77
            W  Y V+D + + +VDP +   H S FL      G T   G   ++  +  G++  ++ 
Sbjct: 102 PWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQ-EKGHITPGANQTMVV 160

Query: 78  LGTVG-LGAVDG--ARMQGAAKIIGI 100
            G  G  G++ G   R+ G ++++GI
Sbjct: 161 SGAAGACGSLAGQIGRLLGCSRVVGI 186

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.98
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.98
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.98
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.98
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.97
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.97
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.97
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.97
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.97
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.97
PRK10083	339	putative oxidoreductase; Provisional	99.97
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.97
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.97
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.97
PTZ00354	334	alcohol dehydrogenase; Provisional	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.97
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.97
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.97
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.97
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.97
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.97
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.97
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.97
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.97
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.97
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.97
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.96
PLN02702	364	L-idonate 5-dehydrogenase	99.96
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.96
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.96
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.96
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.96
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.96
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.96
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.96
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.96
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.96
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.96
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.96
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.96
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.96
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.96
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.96
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.95
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.95
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.95
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.95
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.95
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.95
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.95
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.95
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.95
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.95
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.95
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.95
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.95
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.95
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.94
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.94
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.94
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.94
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.94
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.93
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.92
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.86
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.63
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.56
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.52
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.83
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.83
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.67
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.62
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.5
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.37
PLN02494	477	adenosylhomocysteinase	98.36
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.29
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.21
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.14
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.12
PRK08324	681	short chain dehydrogenase; Validated	98.11
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.06
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.0
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.93
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.93
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.9
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.87
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.8
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.8
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.74
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.71
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.7
PRK05693	274	short chain dehydrogenase; Provisional	97.67
TIGR00438	188	rrmJ cell division protein FtsJ.	97.66
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.64
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.59
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.57
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.54
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.53
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.52
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.5
PRK12742	237	oxidoreductase; Provisional	97.49
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.48
PRK04148	134	hypothetical protein; Provisional	97.48
PRK05993	277	short chain dehydrogenase; Provisional	97.47
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.44
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.42
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.41
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.39
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.38
PRK08177	225	short chain dehydrogenase; Provisional	97.38
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.36
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.35
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.35
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.35
PLN03209	576	translocon at the inner envelope of chloroplast su	97.35
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.3
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.27
PRK07402	196	precorrin-6B methylase; Provisional	97.26
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.26
PRK07060	245	short chain dehydrogenase; Provisional	97.26
PRK07806	248	short chain dehydrogenase; Provisional	97.25
PRK06139	330	short chain dehydrogenase; Provisional	97.25
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.24
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.23
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.23
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.22
PRK00811	283	spermidine synthase; Provisional	97.21
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.2
COG4122	219	Predicted O-methyltransferase [General function pr	97.18
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	97.18
PLN02366	308	spermidine synthase	97.17
PRK06182	273	short chain dehydrogenase; Validated	97.16
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.14
PRK12939	250	short chain dehydrogenase; Provisional	97.14
PRK07326	237	short chain dehydrogenase; Provisional	97.12
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.11
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.1
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.1
PRK07904	253	short chain dehydrogenase; Provisional	97.1
PRK06057	255	short chain dehydrogenase; Provisional	97.09
PRK08339	263	short chain dehydrogenase; Provisional	97.08
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.08
PRK08017	256	oxidoreductase; Provisional	97.07
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.07
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.07
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.06
PRK00536	262	speE spermidine synthase; Provisional	97.05
PRK07109	334	short chain dehydrogenase; Provisional	97.05
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.04
PRK08265	261	short chain dehydrogenase; Provisional	97.04
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.04
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.02
PRK04457	262	spermidine synthase; Provisional	97.01
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	97.01
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.0
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.99
PRK05872	296	short chain dehydrogenase; Provisional	96.98
PRK14967	223	putative methyltransferase; Provisional	96.97
PRK06500	249	short chain dehydrogenase; Provisional	96.97
PRK11207	197	tellurite resistance protein TehB; Provisional	96.97
PRK06949	258	short chain dehydrogenase; Provisional	96.97
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.96
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.95
PRK06953	222	short chain dehydrogenase; Provisional	96.94
PRK07825	273	short chain dehydrogenase; Provisional	96.94
PLN02476	278	O-methyltransferase	96.93
PRK07831	262	short chain dehydrogenase; Provisional	96.93
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.92
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.91
PRK09072	263	short chain dehydrogenase; Provisional	96.91
PRK12829	264	short chain dehydrogenase; Provisional	96.9
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.9
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.89
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.89
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.87
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.87
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.86
PRK06398	258	aldose dehydrogenase; Validated	96.86
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.85
PRK01581	374	speE spermidine synthase; Validated	96.85
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.84
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.84
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.84
COG2910	211	Putative NADH-flavin reductase [General function p	96.83
PRK06484	520	short chain dehydrogenase; Validated	96.83
PRK06101	240	short chain dehydrogenase; Provisional	96.83
PLN02780	320	ketoreductase/ oxidoreductase	96.83
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.82
PRK05866	293	short chain dehydrogenase; Provisional	96.81
PRK07814	263	short chain dehydrogenase; Provisional	96.81
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.8
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.8
PRK07832	272	short chain dehydrogenase; Provisional	96.8
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.79
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.79
PRK06196	315	oxidoreductase; Provisional	96.78
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.77
PRK06940	275	short chain dehydrogenase; Provisional	96.77
PRK05867	253	short chain dehydrogenase; Provisional	96.76
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.76
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.76
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.76
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.76
PRK06180	277	short chain dehydrogenase; Provisional	96.75
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.75
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.75
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.73
PRK09291	257	short chain dehydrogenase; Provisional	96.73
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.72
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.72
CHL00194	317	ycf39 Ycf39; Provisional	96.72
PRK06841	255	short chain dehydrogenase; Provisional	96.71
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.7
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.69
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.68
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	96.67
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.65
PRK08862	227	short chain dehydrogenase; Provisional	96.65
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.65
PRK07574	385	formate dehydrogenase; Provisional	96.63
PRK06128	300	oxidoreductase; Provisional	96.63
PRK08267	260	short chain dehydrogenase; Provisional	96.63
PRK07677	252	short chain dehydrogenase; Provisional	96.63
PRK07062	265	short chain dehydrogenase; Provisional	96.62
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.6
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.6
PRK12828	239	short chain dehydrogenase; Provisional	96.6
PLN02823	336	spermine synthase	96.59
PRK12367	245	short chain dehydrogenase; Provisional	96.59
PRK06194	287	hypothetical protein; Provisional	96.58
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.58
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.57
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.57
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.56
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.56
PRK08223	287	hypothetical protein; Validated	96.55
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.55
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	96.54
PRK08263	275	short chain dehydrogenase; Provisional	96.54
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.53
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.53
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.53
PRK08264	238	short chain dehydrogenase; Validated	96.53
PRK08328	231	hypothetical protein; Provisional	96.52
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.52
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.52
PLN03139	386	formate dehydrogenase; Provisional	96.52
PRK08703	239	short chain dehydrogenase; Provisional	96.51
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	96.48
PRK06198	260	short chain dehydrogenase; Provisional	96.48
PRK07576	264	short chain dehydrogenase; Provisional	96.48
PRK06483	236	dihydromonapterin reductase; Provisional	96.47
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	96.47
PRK07478	254	short chain dehydrogenase; Provisional	96.47
PRK07024	257	short chain dehydrogenase; Provisional	96.47
PRK07454	241	short chain dehydrogenase; Provisional	96.46
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.46
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.46
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	96.45
PRK07577	234	short chain dehydrogenase; Provisional	96.45
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.44
PRK06701	290	short chain dehydrogenase; Provisional	96.44
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.43
PRK05717	255	oxidoreductase; Validated	96.43
PRK06114	254	short chain dehydrogenase; Provisional	96.43
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.42
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.42
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.42
PRK05884	223	short chain dehydrogenase; Provisional	96.41
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.41
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.41
PRK06138	252	short chain dehydrogenase; Provisional	96.4
PRK05875	276	short chain dehydrogenase; Provisional	96.39
PRK08628	258	short chain dehydrogenase; Provisional	96.39
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.39
PRK04266	226	fibrillarin; Provisional	96.39
PRK08317	241	hypothetical protein; Provisional	96.38
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.38
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.38
PRK06125	259	short chain dehydrogenase; Provisional	96.37
PRK06181	263	short chain dehydrogenase; Provisional	96.37
PRK06179	270	short chain dehydrogenase; Provisional	96.36
PRK06720	169	hypothetical protein; Provisional	96.35
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.34
PRK06172	253	short chain dehydrogenase; Provisional	96.34
PRK07411	390	hypothetical protein; Validated	96.34
PRK05876	275	short chain dehydrogenase; Provisional	96.32
PRK07890	258	short chain dehydrogenase; Provisional	96.32
PRK07774	250	short chain dehydrogenase; Provisional	96.32
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.32
PRK13243	333	glyoxylate reductase; Reviewed	96.32
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	96.31
PRK07063	260	short chain dehydrogenase; Provisional	96.31
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.3
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.3
PRK12747	252	short chain dehydrogenase; Provisional	96.3
PRK08643	256	acetoin reductase; Validated	96.29
PRK06482	276	short chain dehydrogenase; Provisional	96.29
PRK05854	313	short chain dehydrogenase; Provisional	96.29
PRK08219	227	short chain dehydrogenase; Provisional	96.28
PLN02244	340	tocopherol O-methyltransferase	96.28
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.28
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.28
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.28
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.28
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.27
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.27
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	96.27
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	96.26
PRK06197	306	short chain dehydrogenase; Provisional	96.26
PRK08618	325	ornithine cyclodeaminase; Validated	96.26
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.26
PRK07417	279	arogenate dehydrogenase; Reviewed	96.25
PRK07985	294	oxidoreductase; Provisional	96.25
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.24
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.24
PLN03075	296	nicotianamine synthase; Provisional	96.24
PRK06914	280	short chain dehydrogenase; Provisional	96.23
PRK12746	254	short chain dehydrogenase; Provisional	96.23
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.23
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	96.23
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.22
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.22
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.21
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.21
PRK06153	393	hypothetical protein; Provisional	96.21
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.2
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.2
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.19
PRK07035	252	short chain dehydrogenase; Provisional	96.19
PRK08589	272	short chain dehydrogenase; Validated	96.19
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.19
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.18
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.18
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.18
PRK09186	256	flagellin modification protein A; Provisional	96.17
PRK12937	245	short chain dehydrogenase; Provisional	96.14
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.14
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.13
PRK09242	257	tropinone reductase; Provisional	96.12
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	96.12
PLN00016	378	RNA-binding protein; Provisional	96.12
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.12
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.12
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.12
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.11
PRK07791	286	short chain dehydrogenase; Provisional	96.1
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.1
PRK10669	558	putative cation:proton antiport protein; Provision	96.09
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.09
PRK08251	248	short chain dehydrogenase; Provisional	96.09
PLN00203	519	glutamyl-tRNA reductase	96.09
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	96.08
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.08
PRK07067	257	sorbitol dehydrogenase; Provisional	96.07
PRK07856	252	short chain dehydrogenase; Provisional	96.05
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.05
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	96.05
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.04
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.04
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.03
PRK10538	248	malonic semialdehyde reductase; Provisional	96.03
PLN02253	280	xanthoxin dehydrogenase	96.03
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.02
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	96.02
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.02
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.02
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	96.01
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.01
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.01
PRK08303	305	short chain dehydrogenase; Provisional	96.0
PLN02256	304	arogenate dehydrogenase	96.0
PRK07074	257	short chain dehydrogenase; Provisional	95.99
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.99
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.97
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	95.97
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.95
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.95
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.94
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	95.94
PRK08278	273	short chain dehydrogenase; Provisional	95.94
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.93
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.92
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.92
PRK07340	304	ornithine cyclodeaminase; Validated	95.91
PRK06849	389	hypothetical protein; Provisional	95.9
KOG0725	270	consensus Reductases with broad range of substrate	95.9
PRK08226	263	short chain dehydrogenase; Provisional	95.9
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.89
PRK07102	243	short chain dehydrogenase; Provisional	95.89
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.89
PLN02928	347	oxidoreductase family protein	95.87
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.87
TIGR00452	314	methyltransferase, putative. Known examples to dat	95.87
PRK06484	520	short chain dehydrogenase; Validated	95.86
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.86
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.86
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	95.86
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.85
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.84
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.84
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	95.84
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	95.84
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.82
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.82
PRK06436	303	glycerate dehydrogenase; Provisional	95.8
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.79
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.78
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.75
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	95.74
PRK05650	270	short chain dehydrogenase; Provisional	95.74
PRK06523	260	short chain dehydrogenase; Provisional	95.74
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.74
PRK03612	521	spermidine synthase; Provisional	95.73
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.73
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.73
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	95.72
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.72
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.7
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.7
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.69
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.69
PRK12743	256	oxidoreductase; Provisional	95.69
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.67
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.67
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.66
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.63
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.6
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	95.59
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.58
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.57
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.57
PLN02490	340	MPBQ/MSBQ methyltransferase	95.57
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.56
PRK07578	199	short chain dehydrogenase; Provisional	95.56
PRK07775	274	short chain dehydrogenase; Provisional	95.55
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.55

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=4.4e-42  Score=273.97  Aligned_cols=236  Identities=27%  Similarity=0.401  Sum_probs=207.6

Q ss_pred             CCCCcccccCCcee-------eeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEE
Q 025336            2 LDGTSRMSVRGQKL-------YHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVA   74 (254)
Q Consensus         2 g~~~~~~~~~Gd~v-------~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vl   74 (254)
                      +|+.|.+|..|...       .++..+|+|+||+++|+.+++++|+++++++||.+.|++.|+|++| .+..++||++|+
T Consensus        93 ~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~  171 (339)
T COG1064          93 SCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVA  171 (339)
T ss_pred             CCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEE
Confidence            45666666655443       3455569999999999999999999999999999999999999999 569999999999


Q ss_pred             EEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           75 VLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        75 I~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      |.|.|++|++++|+||.+|+ +|++++++++|.+.++++|++++++.++   ++..+.+++     .+|+++||++ +..
T Consensus       172 I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~~---~~~~~~~~~-----~~d~ii~tv~-~~~  241 (339)
T COG1064         172 VVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSSD---SDALEAVKE-----IADAIIDTVG-PAT  241 (339)
T ss_pred             EECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcCC---chhhHHhHh-----hCcEEEECCC-hhh
Confidence            99999999999999999998 9999999999999999999999999776   777777765     2999999999 779


Q ss_pred             HHHHHHHcccCCcEEEEEccCC-CceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecc
Q 025336          155 LSEALETTKVGKGKVIVIGVGV-DTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLE  233 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                      ++.+++.|+++ |+++.+|... ....+++...++.+++++.|+..++   ..++++++++..+|+  +++.+.+.++++
T Consensus       242 ~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~---~~d~~e~l~f~~~g~--Ikp~i~e~~~l~  315 (339)
T COG1064         242 LEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT---RADLEEALDFAAEGK--IKPEILETIPLD  315 (339)
T ss_pred             HHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC---HHHHHHHHHHHHhCC--ceeeEEeeECHH
Confidence            99999999999 9999999985 4445677888888999999999775   678999999999999  555554689999


Q ss_pred             cHHHHHHHHcCCCe-eEEEEeC
Q 025336          234 EIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       234 ~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++||+.|.+++. +|.||++
T Consensus       316 ~in~A~~~m~~g~v~gR~Vi~~  337 (339)
T COG1064         316 EINEAYERMEKGKVRGRAVIDM  337 (339)
T ss_pred             HHHHHHHHHHcCCeeeEEEecC
Confidence            99999999999988 5998874

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.9e-41  Score=257.28  Aligned_cols=249  Identities=46%  Similarity=0.806  Sum_probs=233.2

Q ss_pred             CCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHH
Q 025336            3 DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVG   82 (254)
Q Consensus         3 ~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G   82 (254)
                      ++.++|..+|+.+|.+.+..+|+||.++++..+.++++..+++.++++.+...|+|.+.++.+.+++|+++.|+|.|++|
T Consensus       126 DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VG  205 (375)
T KOG0022|consen  126 DGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVG  205 (375)
T ss_pred             CCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHH
Confidence            45667666688888887778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHc
Q 025336           83 LGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT  162 (254)
Q Consensus        83 ~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  162 (254)
                      +++++-+|..|+.++|++|.+++|.+.++++|++..+|..+ ......+.|.+++++ |+|+.|||+|+...+.+++.+.
T Consensus       206 Lav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d-~~~~i~evi~EmTdg-GvDysfEc~G~~~~m~~al~s~  283 (375)
T KOG0022|consen  206 LAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD-LKKPIQEVIIEMTDG-GVDYSFECIGNVSTMRAALESC  283 (375)
T ss_pred             HHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh-ccccHHHHHHHHhcC-CceEEEEecCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999885 224688899999997 9999999999999999999999


Q ss_pred             ccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHH
Q 025336          163 KVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQL  241 (254)
Q Consensus       163 ~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  241 (254)
                      ..+||+.+++|.... +.+++.++.++ ++.++.|+.++.+..+.+++.+++.+.++++++++.++|.+||+++++||+.
T Consensus       284 h~GwG~sv~iGv~~~~~~i~~~p~~l~-~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~l  362 (375)
T KOG0022|consen  284 HKGWGKSVVIGVAAAGQEISTRPFQLV-TGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDL  362 (375)
T ss_pred             hcCCCeEEEEEecCCCcccccchhhhc-cccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHH
Confidence            999999999999877 88889999988 8999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCeeEEEEeC
Q 025336          242 LKQPDCVKVLITI  254 (254)
Q Consensus       242 ~~~~~~~k~vi~~  254 (254)
                      |.+|+.+|.|+.+
T Consensus       363 l~~GksiR~vl~~  375 (375)
T KOG0022|consen  363 LHEGKSIRCVLWM  375 (375)
T ss_pred             HhCCceEEEEEeC
Confidence            9999999999864

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=6.9e-41  Score=272.88  Aligned_cols=245  Identities=25%  Similarity=0.367  Sum_probs=211.4

Q ss_pred             CCCCCcccccCCceeeeee---ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEc
Q 025336            1 MLDGTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG   77 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G   77 (254)
                      +|+++.+|++ ||+|+...   ..|+|+||+.+|++.++++|+++|+++|++++++++|||+++....++++|++|||+|
T Consensus        72 vG~~V~~~~~-GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~g  150 (326)
T COG0604          72 VGSGVTGFKV-GDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHG  150 (326)
T ss_pred             eCCCCCCcCC-CCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence            4789999988 99999874   5699999999999999999999999999999999999999999889999999999998


Q ss_pred             C-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHH
Q 025336           78 L-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  156 (254)
Q Consensus        78 ~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  156 (254)
                      + |++|++++|+||.+|+ .++++..++++.++++++|++++++|++   .++.+.++++++++++|+|+|++|+. .+.
T Consensus       151 aaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~---~~~~~~v~~~t~g~gvDvv~D~vG~~-~~~  225 (326)
T COG0604         151 AAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYRE---EDFVEQVRELTGGKGVDVVLDTVGGD-TFA  225 (326)
T ss_pred             CCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCc---ccHHHHHHHHcCCCCceEEEECCCHH-HHH
Confidence            5 9999999999999998 6777778888888999999999999998   88999999999998999999999998 789


Q ss_pred             HHHHHcccCCcEEEEEccCC-CceeeccHHHHHhCCCEEEeeecCCC---CCCCCHHHHHHHHhCCCCCCCCceEEEeec
Q 025336          157 EALETTKVGKGKVIVIGVGV-DTMVPLNVIALACGGRTLKGTTFGGI---KTKSDLPILLDKCKNKEFKLHQLLTHHVKL  232 (254)
Q Consensus       157 ~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (254)
                      .++++++++ |+++.+|... ....+++...+..+.+.+.|......   ...+.+.++.+++++|+  +++.+..+|||
T Consensus       226 ~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~--l~~~i~~~~~l  302 (326)
T COG0604         226 ASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGK--LKPVIDRVYPL  302 (326)
T ss_pred             HHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCC--CcceeccEech
Confidence            999999999 9999999987 35566666777778888888876533   11345777999999999  66667789999


Q ss_pred             ccHHHHHHHHcCC-Ce-eEEEEeC
Q 025336          233 EEIDKAIQLLKQP-DC-VKVLITI  254 (254)
Q Consensus       233 ~~~~~a~~~~~~~-~~-~k~vi~~  254 (254)
                      ++..++..+.... +. +|+||++
T Consensus       303 ~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         303 AEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             hhhHHHHHHHHcccCCcceEEEeC
Confidence            9965555543333 44 7999875

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=4.8e-40  Score=257.29  Aligned_cols=237  Identities=40%  Similarity=0.745  Sum_probs=221.3

Q ss_pred             CceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 025336           12 GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARM   91 (254)
Q Consensus        12 Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~   91 (254)
                      |..++.+.+.++|+||.++++..++|++++.+++.++.+.|...|.+.+..+.+++++|++|.|.|.|++|++++|-|+.
T Consensus       128 ~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~  207 (366)
T COG1062         128 GVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKA  207 (366)
T ss_pred             CcceeeeeccccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHH
Confidence            44455555667999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc-hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEE
Q 025336           92 QGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK-SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVI  170 (254)
Q Consensus        92 ~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  170 (254)
                      .|+.++++++.+++|+++++++|+++++|.++   . +..+.+.+++++ ++|++|||+|+...+++++.++.+. |+.+
T Consensus       208 agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~---~~~vv~~i~~~T~g-G~d~~~e~~G~~~~~~~al~~~~~~-G~~v  282 (366)
T COG1062         208 AGAGRIIAVDINPEKLELAKKFGATHFVNPKE---VDDVVEAIVELTDG-GADYAFECVGNVEVMRQALEATHRG-GTSV  282 (366)
T ss_pred             cCCceEEEEeCCHHHHHHHHhcCCceeecchh---hhhHHHHHHHhcCC-CCCEEEEccCCHHHHHHHHHHHhcC-CeEE
Confidence            99999999999999999999999999999987   5 699999999998 9999999999998999999999996 9999


Q ss_pred             EEccCCC-ceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeE
Q 025336          171 VIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVK  249 (254)
Q Consensus       171 ~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k  249 (254)
                      ..|.... +.+++++.++. .+.+++|+++++-....+++++++++.+|++++++++++.++|+|+++||+.|.+|+.+|
T Consensus       283 ~iGv~~~~~~i~~~~~~lv-~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR  361 (366)
T COG1062         283 IIGVAGAGQEISTRPFQLV-TGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIR  361 (366)
T ss_pred             EEecCCCCceeecChHHee-ccceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceee
Confidence            9999877 77778888888 559999999998888899999999999999999999999999999999999999999999


Q ss_pred             EEEeC
Q 025336          250 VLITI  254 (254)
Q Consensus       250 ~vi~~  254 (254)
                      -||.+
T Consensus       362 ~Vi~~  366 (366)
T COG1062         362 SVIRF  366 (366)
T ss_pred             EEecC
Confidence            98865

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-39  Score=253.14  Aligned_cols=246  Identities=25%  Similarity=0.417  Sum_probs=214.2

Q ss_pred             CCCCCcccccCCceeee------------------------ee----ccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYH------------------------IF----SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~------------------------~~----~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+.|+.+++ ||||.-                        +.    -+|++++|+++++++++|+|+++|++++|++ .
T Consensus        76 vG~~Vk~LkV-GDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~-e  153 (354)
T KOG0024|consen   76 VGDEVKHLKV-GDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALI-E  153 (354)
T ss_pred             hccccccccc-CCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccc-c
Confidence            4788899999 999851                        10    1289999999999999999999999999988 6


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCC-CCchHHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDE-PNKSISE  131 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~  131 (254)
                      ++++++++. +++.+++|++|||+|+|++|+++...||.+|+.+|++++..+.|++.++++|++.+.+.... +++++.+
T Consensus       154 PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~  232 (354)
T KOG0024|consen  154 PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAE  232 (354)
T ss_pred             chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHH
Confidence            799999998 79999999999999999999999999999999999999999999999999999987766542 1345555


Q ss_pred             HHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHH
Q 025336          132 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPIL  211 (254)
Q Consensus       132 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~  211 (254)
                      .+....+...+|+.|||+|....++.++..++.+ |++++.|.... ..+++......+++.+.|+.   .....+|+.+
T Consensus       233 ~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~g~~-~~~fpi~~v~~kE~~~~g~f---ry~~~~y~~a  307 (354)
T KOG0024|consen  233 LVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGMGAE-EIQFPIIDVALKEVDLRGSF---RYCNGDYPTA  307 (354)
T ss_pred             HHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEeccCCC-ccccChhhhhhheeeeeeee---eeccccHHHH
Confidence            6666555557999999999988999999999999 99999998776 67788888888999999986   2234589999


Q ss_pred             HHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe--eEEEEeC
Q 025336          212 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC--VKVLITI  254 (254)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~k~vi~~  254 (254)
                      ++++.+|++++++++++.|++++..+||+.+.+++.  +|++|..
T Consensus       308 i~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~  352 (354)
T KOG0024|consen  308 IELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITG  352 (354)
T ss_pred             HHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeC
Confidence            999999999999999999999999999999988774  6999863

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1.8e-38  Score=265.54  Aligned_cols=226  Identities=34%  Similarity=0.552  Sum_probs=202.8

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      |+|+||+++|+..++++|+++++++++.++++++|||+++....++++|++|||+|+|++|++++|+||..|+.+|++++
T Consensus       144 G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~  223 (371)
T cd08281         144 SAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVD  223 (371)
T ss_pred             ccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence            68999999999999999999999999999999999999987888999999999999999999999999999996699999


Q ss_pred             CCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-cee
Q 025336          102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMV  180 (254)
Q Consensus       102 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~  180 (254)
                      .++++.++++++|+++++++.+   +++.+.+++.+++ ++|++|||+|.+..+..++++++++ |+++.+|...+ ...
T Consensus       224 ~~~~r~~~a~~~Ga~~~i~~~~---~~~~~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~  298 (371)
T cd08281         224 LNEDKLALARELGATATVNAGD---PNAVEQVRELTGG-GVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARL  298 (371)
T ss_pred             CCHHHHHHHHHcCCceEeCCCc---hhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCcee
Confidence            9999999999999999999887   7888888888877 8999999999877889999999999 99999998654 346


Q ss_pred             eccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEE
Q 025336          181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI  252 (254)
Q Consensus       181 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  252 (254)
                      +++...++.+++++.|+..+.+...++++++++++++|+++++++++++|+|+++++||+.+.+++..|.||
T Consensus       299 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi  370 (371)
T cd08281         299 SVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI  370 (371)
T ss_pred             eecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence            677777888999999998765544567899999999999988888999999999999999999888864444

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=4.6e-38  Score=261.93  Aligned_cols=230  Identities=28%  Similarity=0.532  Sum_probs=204.4

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+.+|+..++++|+++++++++.+++++.|+|+++....++++|++|||+|+|++|++++|+||.+|+.+|+++
T Consensus       128 ~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~  207 (358)
T TIGR03451       128 IGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAV  207 (358)
T ss_pred             cccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999988778889999999999999999999999999999569999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ce
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM  179 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  179 (254)
                      ++++++.++++++|++.++++.+   +++.+.+.+.+++.++|++|||+|++..+..++++++++ |+++.+|.... ..
T Consensus       208 ~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~  283 (358)
T TIGR03451       208 DIDDRKLEWAREFGATHTVNSSG---TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMT  283 (358)
T ss_pred             cCCHHHHHHHHHcCCceEEcCCC---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCce
Confidence            99999999999999999999887   788888888888778999999999876889999999999 99999998654 34


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++++..++.+++++.+++.+.....++++++++++++|++++.++++++||++++++||+.+.+++..|++|.+
T Consensus       284 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~~  358 (358)
T TIGR03451       284 LELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVEL  358 (358)
T ss_pred             eeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEeC
Confidence            567777777799999998654333456789999999999988888899999999999999999888878888864

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=3.4e-37  Score=258.48  Aligned_cols=230  Identities=45%  Similarity=0.810  Sum_probs=199.8

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++|+..++++|+++++++++.+++++.|||+++....++++|++|||+|+|++|++++|+||.+|+.+|+++
T Consensus       150 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~  229 (381)
T PLN02740        150 TSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGV  229 (381)
T ss_pred             CccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEE
Confidence            48999999999999999999999999999999999999988778899999999999999999999999999998669999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHccc-CCcEEEEEccCCC-c
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV-GKGKVIVIGVGVD-T  178 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~~g~~~~-~  178 (254)
                      ++++++.+.++++|++.++++.+ ...++.+.+++++++ ++|++||++|++..+..++.++++ + |+++.+|.... .
T Consensus       230 ~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~g~-G~~v~~G~~~~~~  306 (381)
T PLN02740        230 DINPEKFEKGKEMGITDFINPKD-SDKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLSTHDGW-GLTVLLGIHPTPK  306 (381)
T ss_pred             cCChHHHHHHHHcCCcEEEeccc-ccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhhcCC-CEEEEEccCCCCc
Confidence            99999999999999999998764 112477788888877 899999999987788999999987 5 99999998754 2


Q ss_pred             eeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          179 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       179 ~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++++...++ +++++.|+..+.+....+++++++++.+++++++++++++|+|+|+++||+.+.+++..|++|++
T Consensus       307 ~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~  381 (381)
T PLN02740        307 MLPLHPMELF-DGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL  381 (381)
T ss_pred             eecccHHHHh-cCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence            3455554454 78999998876554445789999999999988888899999999999999999888878999874

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.4e-38  Score=237.25  Aligned_cols=242  Identities=23%  Similarity=0.279  Sum_probs=209.7

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEc-CC
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LG   79 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g   79 (254)
                      .|.+++++++ ||+|.-....|.|+|+..+|...++++|+.+++.+++++...++|||..+.+...+++|++||++. +|
T Consensus        79 vG~gvtdrkv-GDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAG  157 (336)
T KOG1197|consen   79 VGEGVTDRKV-GDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAG  157 (336)
T ss_pred             ecCCcccccc-ccEEEEeccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccc
Confidence            4889999999 999987777799999999999999999999999999999999999999999999999999999996 59


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      ++|++++|++|..|. ++|++..+.+|++.+++.|+.+.|+++.   +|+.+++.++++++|+|+++|.+|.. ++...+
T Consensus       158 GVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h~I~y~~---eD~v~~V~kiTngKGVd~vyDsvG~d-t~~~sl  232 (336)
T KOG1197|consen  158 GVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEHPIDYST---EDYVDEVKKITNGKGVDAVYDSVGKD-TFAKSL  232 (336)
T ss_pred             cHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCcceeeccc---hhHHHHHHhccCCCCceeeeccccch-hhHHHH
Confidence            999999999999999 9999999999999999999999999999   99999999999999999999999997 899999


Q ss_pred             HHcccCCcEEEEEccCCC--ceeeccHHHHHhCCCEEEeeecCCCCC-C----CCHHHHHHHHhCCCCCCCCceEEEeec
Q 025336          160 ETTKVGKGKVIVIGVGVD--TMVPLNVIALACGGRTLKGTTFGGIKT-K----SDLPILLDKCKNKEFKLHQLLTHHVKL  232 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (254)
                      .+|++. |++|.+|..++  ++++++  .+.-+.+.+.......+.. .    ....+++.++.+|.  ++..+.|+|||
T Consensus       233 ~~Lk~~-G~mVSfG~asgl~~p~~l~--~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~--lk~~I~~~ypl  307 (336)
T KOG1197|consen  233 AALKPM-GKMVSFGNASGLIDPIPLN--QLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGH--LKIHIDHVYPL  307 (336)
T ss_pred             HHhccC-ceEEEeccccCCCCCeehh--hcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCc--cceeeeeecch
Confidence            999999 99999999888  445433  3333455444333222222 1    12446778888998  55568999999


Q ss_pred             ccHHHHHHHHcCCCe-eEEEEe
Q 025336          233 EEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       233 ~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      +++.+|+..++++.. +|+++.
T Consensus       308 s~vadA~~diesrktvGkvlLl  329 (336)
T KOG1197|consen  308 SKVADAHADIESRKTVGKVLLL  329 (336)
T ss_pred             HHHHHHHHHHHhhhccceEEEe
Confidence            999999999998887 598875

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=6.7e-37  Score=255.56  Aligned_cols=229  Identities=39%  Similarity=0.701  Sum_probs=195.6

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      |+|+||+++|+..++++|+++++++++.+++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+.+|++++
T Consensus       138 G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~  217 (368)
T TIGR02818       138 STFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAID  217 (368)
T ss_pred             ccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            68999999999999999999999999999999999999987888999999999999999999999999999986799999


Q ss_pred             CCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHccc-CCcEEEEEccCCC-ce
Q 025336          102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV-GKGKVIVIGVGVD-TM  179 (254)
Q Consensus       102 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~~g~~~~-~~  179 (254)
                      .++++.+.++++|++.++++++ ...++.+.+++++++ ++|++|||+|++..+..+++++++ + |+++.+|.... ..
T Consensus       218 ~~~~~~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~~  294 (368)
T TIGR02818       218 INPAKFELAKKLGATDCVNPND-YDKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECCHKGW-GESIIIGVAGAGQE  294 (368)
T ss_pred             CCHHHHHHHHHhCCCeEEcccc-cchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhcCC-CeEEEEeccCCCCc
Confidence            9999999999999999998763 114566778888776 899999999987788999999977 5 99999998643 33


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++....+. ++..+.|+..+......++.++++++++++++++++++++|||+++++||+.+.+++.+|++|.+
T Consensus       295 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~  368 (368)
T TIGR02818       295 ISTRPFQLV-TGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY  368 (368)
T ss_pred             ccccHHHHh-ccceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence            444455554 45567777654433345789999999999988888999999999999999999888778999875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=8.9e-37  Score=252.61  Aligned_cols=241  Identities=26%  Similarity=0.436  Sum_probs=208.5

Q ss_pred             CCCCcccccCCceeeeee----------------------------ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |+++..+++ ||+|+...                            ..|+|+||+.+|+..++++|++++++++++++++
T Consensus        70 G~~v~~~~~-Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~  148 (339)
T cd08239          70 GPGVTHFRV-GDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCG  148 (339)
T ss_pred             CCCCccCCC-CCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcch
Confidence            677788899 99997432                            2489999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.|||+++ ...++++|++|||+|+|++|++++|++|.+|+++|+++++++++.++++++|++.++++++   .+ .+.+
T Consensus       149 ~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~---~~-~~~~  223 (339)
T cd08239         149 IGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ---DD-VQEI  223 (339)
T ss_pred             HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc---ch-HHHH
Confidence            99999998 5778899999999999999999999999999944999999999999999999999999886   55 6777


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeecc-HHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLN-VIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      .+.+++.++|++|||+|++..+..++++++++ |+++.+|.....  +++ ...++.+++++.|++...   .+++++++
T Consensus       224 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~  297 (339)
T cd08239         224 RELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGGEL--TIEVSNDLIRKQRTLIGSWYFS---VPDMEECA  297 (339)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCCCc--ccCcHHHHHhCCCEEEEEecCC---HHHHHHHH
Confidence            77777778999999999986778899999999 999999976542  222 234666999999987542   46799999


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +++.++++++.++++++|+++++++||+.+.++..+|+||++
T Consensus       298 ~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~  339 (339)
T cd08239         298 EFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF  339 (339)
T ss_pred             HHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence            999999988888999999999999999999887767999874

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=2.3e-36  Score=252.57  Aligned_cols=229  Identities=40%  Similarity=0.729  Sum_probs=196.8

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      |+|+||+.+|+..++++|+++++++++.+++++.|||+++....++++|++|||+|+|++|++++|+||.+|+.+|++++
T Consensus       139 G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~  218 (368)
T cd08300         139 STFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGID  218 (368)
T ss_pred             ccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence            68999999999999999999999999999999999999987788999999999999999999999999999996699999


Q ss_pred             CCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-cee
Q 025336          102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMV  180 (254)
Q Consensus       102 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~  180 (254)
                      +++++.+.++++|+++++++++ ..+++.+.+.+++++ ++|++|||+|++..+..+++++++++|+++.+|.... ...
T Consensus       219 ~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~  296 (368)
T cd08300         219 INPDKFELAKKFGATDCVNPKD-HDKPIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEI  296 (368)
T ss_pred             CCHHHHHHHHHcCCCEEEcccc-cchHHHHHHHHHhCC-CCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCcc
Confidence            9999999999999999998875 112577888888877 8999999999876889999999773389999997643 234


Q ss_pred             eccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEe
Q 025336          181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  253 (254)
Q Consensus       181 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  253 (254)
                      .++...+. ++..+.++..+.+....++++++++++++++++.++++++|+|+++++||+.+.+++..|++|+
T Consensus       297 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~  368 (368)
T cd08300         297 STRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK  368 (368)
T ss_pred             ccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence            44454454 4567778776666556779999999999998888889999999999999999988887899874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=3e-36  Score=252.21  Aligned_cols=230  Identities=45%  Similarity=0.816  Sum_probs=196.8

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      |+|+||+.+|+..++++|+++++++++.+++++.++|+++....++++|++|||+|+|++|++++|++|.+|+..|++++
T Consensus       146 G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~  225 (378)
T PLN02827        146 SSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVD  225 (378)
T ss_pred             ccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            79999999999999999999999999998888899998877778899999999999999999999999999985688888


Q ss_pred             CCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceee
Q 025336          102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVP  181 (254)
Q Consensus       102 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  181 (254)
                      .++++.++++++|+++++++++ ..+++.+.+++++++ ++|++||++|.+..+..+++.+++++|+++.+|.... ...
T Consensus       226 ~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~-~~~  302 (378)
T PLN02827        226 INPEKAEKAKTFGVTDFINPND-LSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKA-KPE  302 (378)
T ss_pred             CCHHHHHHHHHcCCcEEEcccc-cchHHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCC-Ccc
Confidence            8999999999999999998764 113677778888776 8999999999876789999999884389999998654 223


Q ss_pred             ccH-HHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          182 LNV-IALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       182 ~~~-~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +.. ..++.+++++.|+....+....+++++++++++++++++++++++|+|+++++||+.+.+++.+|.||++
T Consensus       303 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~  376 (378)
T PLN02827        303 VSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHM  376 (378)
T ss_pred             ccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEe
Confidence            322 2455699999998876554456789999999999988877899999999999999999988878999864

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=8.6e-36  Score=249.30  Aligned_cols=228  Identities=44%  Similarity=0.815  Sum_probs=198.4

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      |+|+||+++|+..++++|+++++++++++++++.|||.++....++++|++|||+|+|++|++++|+||.+|+.+|++++
T Consensus       140 G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~  219 (369)
T cd08301         140 STFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVD  219 (369)
T ss_pred             ccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            78999999999999999999999999999999999999887788999999999999999999999999999986799999


Q ss_pred             CCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHccc-CCcEEEEEccCCC-ce
Q 025336          102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV-GKGKVIVIGVGVD-TM  179 (254)
Q Consensus       102 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~~g~~~~-~~  179 (254)
                      +++++.++++++|++.++++.+ ...++.+.+++++++ ++|++|||+|.+..+..+++++++ + |+++.+|.... ..
T Consensus       220 ~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~~~~~-g~~v~~g~~~~~~~  296 (369)
T cd08301         220 LNPSKFEQAKKFGVTEFVNPKD-HDKPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECVHDGW-GVTVLLGVPHKDAV  296 (369)
T ss_pred             CCHHHHHHHHHcCCceEEcccc-cchhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHhhcCC-CEEEEECcCCCCcc
Confidence            9999999999999998888764 113466777777776 899999999987678899999998 6 89999998764 34


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEe
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  253 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  253 (254)
                      +++++..++ +++++.|+..+.+....+++++++++.++.+++++.++++|||+++++||+.+.+++..|++|.
T Consensus       297 ~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~  369 (369)
T cd08301         297 FSTHPMNLL-NGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCILH  369 (369)
T ss_pred             cccCHHHHh-cCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEeC
Confidence            556655555 7899999887665555678999999999998888888999999999999999999888898873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=9.8e-36  Score=246.57  Aligned_cols=220  Identities=21%  Similarity=0.317  Sum_probs=187.7

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      +|+|+||+++|+..++++|+++++++++ +..++.+||+++ ......++++|||+|+|++|++++|+++.+|+++|+++
T Consensus       123 ~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~  200 (343)
T PRK09880        123 DGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCA  200 (343)
T ss_pred             CCceeeeEEechHHeEECCCCCCHHHHH-hhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            4999999999999999999999987665 447788999998 45566689999999999999999999999999679999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCcee
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV  180 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  180 (254)
                      ++++++++.++++|+++++++++   +++.+.. +. .+ ++|++|||+|.+..+..++++++++ |+++.+|.... ..
T Consensus       201 ~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~-~~-~g-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~  272 (343)
T PRK09880        201 DVSPRSLSLAREMGADKLVNPQN---DDLDHYK-AE-KG-YFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGGA-PP  272 (343)
T ss_pred             eCCHHHHHHHHHcCCcEEecCCc---ccHHHHh-cc-CC-CCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CC
Confidence            99999999999999999999876   5544322 21 23 6999999999876889999999999 99999997554 35


Q ss_pred             eccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       181 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++..++.+++++.|+...    .+++++++++++++++++.++++++|+++++++||+.+.++.. +|++|.+
T Consensus       273 ~~~~~~~~~k~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        273 EFPMMTLIVKEISLKGSFRF----TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             ccCHHHHHhCCcEEEEEeec----cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            66677777899999998632    4679999999999998888889999999999999999987765 6999874

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1.7e-35  Score=247.03  Aligned_cols=229  Identities=50%  Similarity=0.878  Sum_probs=197.6

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++++..++++|+++++++++.+++++.|||+++....++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus       136 ~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~  215 (365)
T cd08277         136 TSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGV  215 (365)
T ss_pred             cccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            47899999999999999999999999999999999999998778899999999999999999999999999998679999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHccc-CCcEEEEEccCCCce
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV-GKGKVIVIGVGVDTM  179 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~~g~~~~~~  179 (254)
                      ++++++.+.++++|+++++++.+ ...++.+.+++.++ .++|++|||+|+...+..+++++++ + |+++.+|...+..
T Consensus       216 ~~~~~~~~~~~~~ga~~~i~~~~-~~~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~  292 (365)
T cd08277         216 DINEDKFEKAKEFGATDFINPKD-SDKPVSEVIREMTG-GGVDYSFECTGNADLMNEALESTKLGW-GVSVVVGVPPGAE  292 (365)
T ss_pred             eCCHHHHHHHHHcCCCcEecccc-ccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHhcccCC-CEEEEEcCCCccc
Confidence            99999999999999999988764 11235667777777 4899999999987688999999976 6 9999999865323


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEe
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  253 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  253 (254)
                      .++++..+. ++.++.|+..+.+....++++++++++++.+++++++++.|+|+++++||+.+.+++.+|++++
T Consensus       293 ~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~  365 (365)
T cd08277         293 LSIRPFQLI-LGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT  365 (365)
T ss_pred             cccCHhHHh-hCCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence            455666666 4899999887765545678999999999998888899999999999999999988877799874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=5.3e-35  Score=242.69  Aligned_cols=245  Identities=20%  Similarity=0.284  Sum_probs=203.8

Q ss_pred             CCCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++..|++ ||+|+.+.                           ..|+|+||+.+|+..++++|+++++++++.+. +
T Consensus        68 vG~~v~~~~v-Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~  145 (347)
T PRK10309         68 VGSGVDDLHP-GDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-P  145 (347)
T ss_pred             eCCCCCCCCC-CCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-H
Confidence            3677888999 99997542                           24899999999999999999999999998773 5


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.++++++ ....++++++|||+|+|++|++++|+|+.+|++.|+++++++++.+.++++|+++++++++   .+ .+.+
T Consensus       146 ~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~---~~-~~~~  220 (347)
T PRK10309        146 ITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE---MS-APQI  220 (347)
T ss_pred             HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc---cC-HHHH
Confidence            56678775 6778899999999999999999999999999955788989999999999999999998875   44 4566


Q ss_pred             HHhhCCCCcc-EEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeecc---HHHHHhCCCEEEeeecCCCC--CCCC
Q 025336          134 KGITHGMGVD-YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLN---VIALACGGRTLKGTTFGGIK--TKSD  207 (254)
Q Consensus       134 ~~~~~~~~~d-~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~i~g~~~~~~~--~~~~  207 (254)
                      .+.+.+.++| ++|||+|++..+..++++++++ |+++.+|...+ ..+++   +..++.+++++.|+..+...  ..++
T Consensus       221 ~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~  298 (347)
T PRK10309        221 QSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHH-DLHLTSATFGKILRKELTVIGSWMNYSSPWPGQE  298 (347)
T ss_pred             HHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CcccChhhhhHHhhcCcEEEEEeccccCCcchhH
Confidence            7777666898 9999999877889999999999 99999997654 22232   23566789999998754221  1367


Q ss_pred             HHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          208 LPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++++++|.++++++++++|+|+++++||+.+.++.. +|+|+++
T Consensus       299 ~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        299 WETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             HHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence            8899999999998888999999999999999999988776 6999874

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=4.5e-35  Score=242.66  Aligned_cols=241  Identities=20%  Similarity=0.243  Sum_probs=199.4

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCc--eEE--cCCCCCcc-ccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANY--VVR--VDPSIDLS-HASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~--v~~--~p~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      |+++.+|++ ||+|+++   |+|+||+++++..  +.+  +|++++++ ++++++++++|||+++....++++|++|||+
T Consensus        90 g~~v~~~~~-Gd~V~~~---~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~  165 (348)
T PLN03154         90 DSDDPNFKP-GDLISGI---TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVS  165 (348)
T ss_pred             ecCCCCCCC-CCEEEec---CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            667788999 9999864   6799999999753  544  48999986 6888999999999999778899999999999


Q ss_pred             cC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           77 GL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        77 G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      |+ |++|++++|+||.+|+ +|++++.++++.++++ ++|++.++++++  ..++.+.+++.+++ ++|++|||+|+. .
T Consensus       166 GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~-gvD~v~d~vG~~-~  240 (348)
T PLN03154        166 AASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKE--EPDLDAALKRYFPE-GIDIYFDNVGGD-M  240 (348)
T ss_pred             cCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCC--cccHHHHHHHHCCC-CcEEEEECCCHH-H
Confidence            87 9999999999999999 8999989999999987 799999999874  13677788877764 899999999986 7


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCcee-----eccHHHHHhCCCEEEeeecCCCC--CCCCHHHHHHHHhCCCCCCCCceE
Q 025336          155 LSEALETTKVGKGKVIVIGVGVDTMV-----PLNVIALACGGRTLKGTTFGGIK--TKSDLPILLDKCKNKEFKLHQLLT  227 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
                      +..++++++++ |+++.+|...+...     ..+...++.+++++.|+....+.  ..+.++++++++++|+++  +.+.
T Consensus       241 ~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~--~~~~  317 (348)
T PLN03154        241 LDAALLNMKIH-GRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIV--YIED  317 (348)
T ss_pred             HHHHHHHhccC-CEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCcc--Ccee
Confidence            89999999999 99999997654211     12455677799999998754321  124577899999999965  4566


Q ss_pred             EEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          228 HHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      .+|+|+++++|++.+.+++. +|+||++
T Consensus       318 ~~~~L~~~~~A~~~l~~g~~~GKvVl~~  345 (348)
T PLN03154        318 MSEGLESAPAALVGLFSGKNVGKQVIRV  345 (348)
T ss_pred             cccCHHHHHHHHHHHHcCCCCceEEEEe
Confidence            78999999999999998887 5999874

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.6e-34  Score=223.90  Aligned_cols=217  Identities=24%  Similarity=0.416  Sum_probs=191.3

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      |+|++|+++++.+++++|++++.+.||.+.|+..|+|..| .+.++.||+++.|.|+|++|.+++|+||++|. +|++++
T Consensus       135 ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis  212 (360)
T KOG0023|consen  135 GGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVIS  212 (360)
T ss_pred             CccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEe
Confidence            5699999999999999999999999999999999999998 68888999999999997799999999999999 999999


Q ss_pred             CCc-ccHHHHHhcCCceEeCCC-CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCce
Q 025336          102 KNP-WKKEKGEAFGMTDFINPD-DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTM  179 (254)
Q Consensus       102 ~~~-~~~~~~~~~g~~~v~~~~-~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  179 (254)
                      ++. +|.+.++.+||+..++.. +   ++..+.+.+.+++ ++|.+.+.  ....++.++.+++++ |++|.+|.+.. .
T Consensus       213 ~~~~kkeea~~~LGAd~fv~~~~d---~d~~~~~~~~~dg-~~~~v~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~~-~  284 (360)
T KOG0023|consen  213 TSSKKKEEAIKSLGADVFVDSTED---PDIMKAIMKTTDG-GIDTVSNL--AEHALEPLLGLLKVN-GTLVLVGLPEK-P  284 (360)
T ss_pred             CCchhHHHHHHhcCcceeEEecCC---HHHHHHHHHhhcC-cceeeeec--cccchHHHHHHhhcC-CEEEEEeCcCC-c
Confidence            988 555666789999988877 5   8899999887776 67777666  334689999999999 99999999887 7


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +.++.+.+..+.+.|.|+.+++   ..+.++++++..++.+.  ..+ +..+++++++||+.|.+++. .|.||++
T Consensus       285 ~~~~~~~lil~~~~I~GS~vG~---~ket~E~Ldf~a~~~ik--~~I-E~v~~~~v~~a~erm~kgdV~yRfVvD~  354 (360)
T KOG0023|consen  285 LKLDTFPLILGRKSIKGSIVGS---RKETQEALDFVARGLIK--SPI-ELVKLSEVNEAYERMEKGDVRYRFVVDV  354 (360)
T ss_pred             ccccchhhhcccEEEEeecccc---HHHHHHHHHHHHcCCCc--Cce-EEEehhHHHHHHHHHHhcCeeEEEEEEc
Confidence            8888888888999999999886   57799999999999954  444 58899999999999999998 5998874

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=1.8e-33  Score=233.95  Aligned_cols=241  Identities=24%  Similarity=0.413  Sum_probs=209.4

Q ss_pred             CCCCcccccCCceeeee---------------------------e-ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHI---------------------------F-SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~---------------------------~-~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |+++.+|++ ||+|+..                           . ..|+|++|+.++...++++|+++++++++.+ .+
T Consensus        80 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~~  157 (351)
T cd08233          80 GSGVTGFKV-GDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-EP  157 (351)
T ss_pred             CCCCCCCCC-CCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-cH
Confidence            667778999 9999752                           1 1589999999999999999999999998876 67


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.|||+++ ...+++++++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|++.++++++   .++.+.+
T Consensus       158 ~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~---~~~~~~l  233 (351)
T cd08233         158 LAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTE---VDVVAEV  233 (351)
T ss_pred             HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCc---cCHHHHH
Confidence            88999998 7888999999999999999999999999999977889989999999999999999999887   7888888


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      ++.++++++|+++||+|.+..+..++++++++ |+++.+|.... ..++++..+..+++++.|....   ..++++++++
T Consensus       234 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~  308 (351)
T cd08233         234 RKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWEK-PISFNPNDLVLKEKTLTGSICY---TREDFEEVID  308 (351)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCCC-CCccCHHHHHhhCcEEEEEecc---CcchHHHHHH
Confidence            88887768999999999766889999999999 99999998653 4566777777799999998643   2477999999


Q ss_pred             HHhCCCCCCCCceEEEeecccH-HHHHHHHcCCCe--eEEEEe
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEI-DKAIQLLKQPDC--VKVLIT  253 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~--~k~vi~  253 (254)
                      +++++++++++.++++|+++++ ++|++.+.+++.  +|+||.
T Consensus       309 ~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~  351 (351)
T cd08233         309 LLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS  351 (351)
T ss_pred             HHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999998877888889999996 789998887774  699873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=1.5e-33  Score=234.11  Aligned_cols=226  Identities=25%  Similarity=0.363  Sum_probs=194.2

Q ss_pred             cCcceeeEEecCCceEEcCC------CCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 025336           21 CSTWSEYMVIDANYVVRVDP------SIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA   94 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~   94 (254)
                      +|+|+||+.+|+..++++|+      ++++++++.+++++.|+|+++ ....++++++|+|+|+|++|++++|+|+.+|+
T Consensus       113 ~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~  191 (349)
T TIGR03201       113 QGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA  191 (349)
T ss_pred             CCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            48999999999999999999      899999999999999999998 46889999999999999999999999999999


Q ss_pred             CeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCcc----EEEEcCCChhHHHHHHHHcccCCcEEE
Q 025336           95 AKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD----YCFECTGVPSLLSEALETTKVGKGKVI  170 (254)
Q Consensus        95 ~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d----~v~d~~g~~~~~~~~~~~l~~~~G~~v  170 (254)
                       +|+++++++++.++++++|+++++++.+.+.+++.+.+++++++.++|    .+|||+|++..+..++++++++ |+++
T Consensus       192 -~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv  269 (349)
T TIGR03201       192 -AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLV  269 (349)
T ss_pred             -eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEE
Confidence             899999999999999999999999876511235777788888877886    8999999887788899999999 9999


Q ss_pred             EEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eE
Q 025336          171 VIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VK  249 (254)
Q Consensus       171 ~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k  249 (254)
                      .+|.... ..++++..++.++.++.|++..   ...+++++++++++|++++.++++ .|||+++++||+.+.+++. +|
T Consensus       270 ~~G~~~~-~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k  344 (349)
T TIGR03201       270 VVGYTMA-KTEYRLSNLMAFHARALGNWGC---PPDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRR  344 (349)
T ss_pred             EECcCCC-CcccCHHHHhhcccEEEEEecC---CHHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccce
Confidence            9998754 3455666777678899887643   246799999999999988777775 7999999999999988876 59


Q ss_pred             EEEeC
Q 025336          250 VLITI  254 (254)
Q Consensus       250 ~vi~~  254 (254)
                      +++++
T Consensus       345 ~~~~~  349 (349)
T TIGR03201       345 AILTP  349 (349)
T ss_pred             EEecC
Confidence            88864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=1.3e-33  Score=234.92  Aligned_cols=217  Identities=24%  Similarity=0.405  Sum_probs=181.0

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      +|+|+||+++|++.++++|+++++++++.+++++.|+|+++.....+++|++|||.|+|++|++++|+||.+|+ +|+++
T Consensus       135 ~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~  213 (360)
T PLN02586        135 YGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVI  213 (360)
T ss_pred             CCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            48999999999999999999999999999999999999998666667899999999999999999999999999 78887


Q ss_pred             cCCccc-HHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCce
Q 025336          101 DKNPWK-KEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTM  179 (254)
Q Consensus       101 ~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  179 (254)
                      +.++++ .+.++++|+++++++++   .   +.+++..+  ++|++||++|.+..+..++++++++ |+++.+|.... .
T Consensus       214 ~~~~~~~~~~~~~~Ga~~vi~~~~---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~~-~  283 (360)
T PLN02586        214 SSSSNKEDEAINRLGADSFLVSTD---P---EKMKAAIG--TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPEK-P  283 (360)
T ss_pred             eCCcchhhhHHHhCCCcEEEcCCC---H---HHHHhhcC--CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCCC-C
Confidence            776655 45667899999998764   3   24444443  6999999999876789999999999 99999997644 3


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ..+++..++.++..+.|+..+.   ..+++++++++++|++++  .+ ++|+|+++++||+.+.+++. +|+||++
T Consensus       284 ~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~li~~g~i~~--~~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  353 (360)
T PLN02586        284 LELPIFPLVLGRKLVGGSDIGG---IKETQEMLDFCAKHNITA--DI-ELIRMDEINTAMERLAKSDVRYRFVIDV  353 (360)
T ss_pred             CccCHHHHHhCCeEEEEcCcCC---HHHHHHHHHHHHhCCCCC--cE-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            5566666676888888876432   356899999999999664  34 58999999999999998876 6999864

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=3.1e-33  Score=233.32  Aligned_cols=230  Identities=28%  Similarity=0.423  Sum_probs=194.3

Q ss_pred             cCcceeeEEecCC-ceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEE
Q 025336           21 CSTWSEYMVIDAN-YVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIG   99 (254)
Q Consensus        21 ~g~~a~~~~v~~~-~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~   99 (254)
                      .|+|+||+++|+. .++++|++++++++++++++++|||+++......+++++|||+|+|++|++++|+|+.+|+++|++
T Consensus       128 ~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~  207 (361)
T cd08231         128 SGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIV  207 (361)
T ss_pred             CcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            4899999999996 799999999999999998999999999966666679999999999999999999999999977999


Q ss_pred             EcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-c
Q 025336          100 IDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-T  178 (254)
Q Consensus       100 v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~  178 (254)
                      +++++++.++++++|++.++++++.+..++...+.+.+++.++|++|||+|+...+..++++++++ |+++.+|.... .
T Consensus       208 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~  286 (361)
T cd08231         208 IDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAG  286 (361)
T ss_pred             EcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCC
Confidence            989999999999999999888775111223356778888779999999999866789999999999 99999997643 3


Q ss_pred             eeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCC--CCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          179 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNK--EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       179 ~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      ..++++..++.+++++.++...   ..++++++++++.++  .++++++++++|+++++++||+.+.++..+|+||++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~  361 (361)
T cd08231         287 TVPLDPERIVRKNLTIIGVHNY---DPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP  361 (361)
T ss_pred             ccccCHHHHhhcccEEEEcccC---CchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence            4456665667799999988643   356789999999988  666777888899999999999999888778999874

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=3e-33  Score=230.91  Aligned_cols=246  Identities=26%  Similarity=0.386  Sum_probs=201.7

Q ss_pred             CCCCcccccCCceeeee-------e-----ccCcceeeEEecCCce-EEcCCCCCccccccccchhhhhhHHHHHhcCCC
Q 025336            2 LDGTSRMSVRGQKLYHI-------F-----SCSTWSEYMVIDANYV-VRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVE   68 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~-------~-----~~g~~a~~~~v~~~~v-~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~   68 (254)
                      +|+.|.+|..|...++-       .     .+|+|+||+++|++.+ .++|+++ ..+++++..++.+++++.......+
T Consensus        89 ~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~~~~~~a~~~~~~  167 (350)
T COG1063          89 PCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLATAYHGHAERAAVR  167 (350)
T ss_pred             CCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhhhhhhhhhccCCC
Confidence            57777777766664432       1     2489999999997555 5558887 5566666689999988743455555


Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      ++.+|+|+|+|++|++++++++..|+.+|++++.+++|++++++ .|++.+++...   ++....+.+.+++.++|++||
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~---~~~~~~~~~~t~g~g~D~vie  244 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE---DDAGAEILELTGGRGADVVIE  244 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc---ccHHHHHHHHhCCCCCCEEEE
Confidence            66699999999999999999999999899999999999999998 66777766665   477788888998889999999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceE
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLT  227 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
                      |+|.+..+..++++++++ |+++.+|.+......++...++.+++++.|+..  .....+++.+++++.+|++++..+++
T Consensus       245 ~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~--~~~~~~~~~~~~ll~~g~i~~~~lit  321 (350)
T COG1063         245 AVGSPPALDQALEALRPG-GTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLR--PSGREDFERALDLLASGKIDPEKLIT  321 (350)
T ss_pred             CCCCHHHHHHHHHHhcCC-CEEEEEeccCCccCccCHHHHHhcccEEEeccC--CCCcccHHHHHHHHHcCCCChhHceE
Confidence            999988899999999999 999999998762116677788889999999842  12356799999999999999999999


Q ss_pred             EEeecccHHHHHHHHcCCC--eeEEEEeC
Q 025336          228 HHVKLEEIDKAIQLLKQPD--CVKVLITI  254 (254)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~--~~k~vi~~  254 (254)
                      +.++++++++||+.+.+++  ..|+++.+
T Consensus       322 ~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         322 HRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             eeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            9999999999999998754  35999864

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.3e-33  Score=234.23  Aligned_cols=217  Identities=21%  Similarity=0.375  Sum_probs=181.3

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAE-VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIG   99 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~   99 (254)
                      +|+|+||+++|++.++++|+++++++++.+++++.|+|+++..... .++|++|+|.|+|++|++++|+||.+|+ +|++
T Consensus       129 ~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~  207 (375)
T PLN02178        129 QGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTV  207 (375)
T ss_pred             CCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEE
Confidence            4899999999999999999999999999999999999998744332 3689999999999999999999999999 7888


Q ss_pred             EcCCcc-cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCc
Q 025336          100 IDKNPW-KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDT  178 (254)
Q Consensus       100 v~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  178 (254)
                      ++.+++ +.+.++++|+++++++++   .   +.+.+.+ + ++|++|||+|.+..+..++++++++ |+++.+|.... 
T Consensus       208 ~~~~~~~~~~~a~~lGa~~~i~~~~---~---~~v~~~~-~-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~~-  277 (375)
T PLN02178        208 ISRSSEKEREAIDRLGADSFLVTTD---S---QKMKEAV-G-TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPEK-  277 (375)
T ss_pred             EeCChHHhHHHHHhCCCcEEEcCcC---H---HHHHHhh-C-CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCCC-
Confidence            877654 477888999999998764   2   3455544 3 7999999999876789999999999 99999997644 


Q ss_pred             eeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          179 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       179 ~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ..+++...++.+++++.|+..+.   ..+++++++++++|++++  .+ +.|||+++++||+.+.+++. +|+||.+
T Consensus       278 ~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~--~i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  348 (375)
T PLN02178        278 PLDLPIFPLVLGRKMVGGSQIGG---MKETQEMLEFCAKHKIVS--DI-ELIKMSDINSAMDRLAKSDVRYRFVIDV  348 (375)
T ss_pred             CCccCHHHHHhCCeEEEEeCccC---HHHHHHHHHHHHhCCCcc--cE-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence            45566777777999999987543   356899999999999654  34 57999999999999988876 6998864

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2e-33  Score=231.22  Aligned_cols=229  Identities=21%  Similarity=0.249  Sum_probs=193.1

Q ss_pred             CCCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++.+|++ ||+|+..                            ..+|+|+||+.+|+..++++|+++++++++.+++
T Consensus        71 vG~~v~~~~~-Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~  149 (329)
T TIGR02822        71 RGADAGGFAV-GDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLC  149 (329)
T ss_pred             ECCCCcccCC-CCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhc
Confidence            3677888999 9999621                            1248999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      ++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|+++++++.+   ..    
T Consensus       150 ~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~---~~----  220 (329)
T TIGR02822       150 AGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAYD---TP----  220 (329)
T ss_pred             cchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceeccccc---cC----
Confidence            999999998 46889999999999999999999999999999 8999999999999999999999987543   11    


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                            ..++|.++++.+....+..++++++++ |+++.+|...+...++++..++.+++++.++...   ...++.+++
T Consensus       221 ------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~  290 (329)
T TIGR02822       221 ------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSN---TRADAREFL  290 (329)
T ss_pred             ------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCccCCCCCHHHHhhCCcEEEEeecC---CHHHHHHHH
Confidence                  127899999888777899999999999 9999999754322345666666789999987643   245688899


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEE
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi  252 (254)
                      +++++++++   +++++|||+++++||+.+.+++. +|+||
T Consensus       291 ~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       291 ELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             HHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence            999999965   35789999999999999988877 59887

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=1.3e-33  Score=227.46  Aligned_cols=205  Identities=25%  Similarity=0.361  Sum_probs=175.4

Q ss_pred             cCcceeeEEecCC-ceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEE
Q 025336           21 CSTWSEYMVIDAN-YVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIG   99 (254)
Q Consensus        21 ~g~~a~~~~v~~~-~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~   99 (254)
                      +|+|+||+++|+. .++++|+++++++++.+++++.|+|+++ ......++++|||+|+|++|++++|+||.+|+.+|++
T Consensus        72 ~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~  150 (280)
T TIGR03366        72 SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVA  150 (280)
T ss_pred             cccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4899999999997 6999999999999999989999999987 4556679999999999999999999999999955899


Q ss_pred             EcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-c
Q 025336          100 IDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-T  178 (254)
Q Consensus       100 v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~  178 (254)
                      ++++++|.+.++++|++.++++.+     ..+.+++.+++.++|++||++|.+..++.++++++++ |+++.+|.... .
T Consensus       151 ~~~~~~r~~~a~~~Ga~~~i~~~~-----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~  224 (280)
T TIGR03366       151 ADPSPDRRELALSFGATALAEPEV-----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGSVFPGG  224 (280)
T ss_pred             ECCCHHHHHHHHHcCCcEecCchh-----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEeccCCCCC
Confidence            988999999999999999887653     2455666777778999999999887889999999999 99999997543 3


Q ss_pred             eeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCC--CCCCCCceEEEeecccH
Q 025336          179 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNK--EFKLHQLLTHHVKLEEI  235 (254)
Q Consensus       179 ~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  235 (254)
                      ..++++..++.+++++.|+..+   ..++++++++++.++  +++++++++++||++++
T Consensus       225 ~~~i~~~~~~~~~~~i~g~~~~---~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       225 PVALDPEQVVRRWLTIRGVHNY---EPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             ceeeCHHHHHhCCcEEEecCCC---CHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            4567778888899999998643   246799999999984  66777889999999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=2.2e-33  Score=232.24  Aligned_cols=241  Identities=19%  Similarity=0.258  Sum_probs=197.3

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecC-CceEEcC-CCCCcc-ccccccchhhhhhHHHHHhcCCCCCCEEEEEcC
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDA-NYVVRVD-PSIDLS-HASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL   78 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~-~~v~~~p-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~   78 (254)
                      |.++..|++ ||+|+++   |+|+||+++|+ ..++++| +.++++ ++++++++++|||+++....++++|++|||+|+
T Consensus        85 ~~~v~~~~v-Gd~V~~~---g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga  160 (338)
T cd08295          85 DSGNPDFKV-GDLVWGF---TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAA  160 (338)
T ss_pred             ecCCCCCCC-CCEEEec---CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecC
Confidence            445667889 9999865   67999999999 7999995 678886 788899999999999977889999999999987


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHH
Q 025336           79 -GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  156 (254)
Q Consensus        79 -g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  156 (254)
                       |++|++++|+||.+|+ +|+++++++++.+++++ +|+++++++.+  ..++.+.+++.++ .++|++||++|+. .+.
T Consensus       161 ~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~-~gvd~v~d~~g~~-~~~  235 (338)
T cd08295         161 SGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKE--EPDLDAALKRYFP-NGIDIYFDNVGGK-MLD  235 (338)
T ss_pred             ccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCC--cccHHHHHHHhCC-CCcEEEEECCCHH-HHH
Confidence             9999999999999999 89999899999999998 99999998754  1467777877765 5899999999985 789


Q ss_pred             HHHHHcccCCcEEEEEccCCCcee-----eccHHHHHhCCCEEEeeecCCCCC--CCCHHHHHHHHhCCCCCCCCceEEE
Q 025336          157 EALETTKVGKGKVIVIGVGVDTMV-----PLNVIALACGGRTLKGTTFGGIKT--KSDLPILLDKCKNKEFKLHQLLTHH  229 (254)
Q Consensus       157 ~~~~~l~~~~G~~v~~g~~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  229 (254)
                      .++++++++ |+++.+|...+...     ..+...+.++++++.++....+..  ...++++++++.+|++++.  +...
T Consensus       236 ~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~  312 (338)
T cd08295         236 AVLLNMNLH-GRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIA  312 (338)
T ss_pred             HHHHHhccC-cEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecc
Confidence            999999999 99999987543111     123445666888888866443221  2346788999999996543  4456


Q ss_pred             eecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          230 VKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       230 ~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      |+++++++|++.+.+++. +|+|+++
T Consensus       313 ~~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         313 DGLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             cCHHHHHHHHHHHhcCCCCceEEEEC
Confidence            999999999999988776 5999874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=5.7e-33  Score=228.47  Aligned_cols=240  Identities=18%  Similarity=0.221  Sum_probs=198.6

Q ss_pred             CCCCcc-cccCCceeeeeec-cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE-c-
Q 025336            2 LDGTSR-MSVRGQKLYHIFS-CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL-G-   77 (254)
Q Consensus         2 g~~~~~-~~~~Gd~v~~~~~-~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-G-   77 (254)
                      |+++.+ |++ ||+|+++.+ +|+|+||+++|++.++++|++++++++++++..++|||.++ ..... +++.++|+ | 
T Consensus        76 G~~v~~~~~v-Gd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g  152 (324)
T cd08291          76 GGGPLAQSLI-GKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE-EGAKAVVHTAA  152 (324)
T ss_pred             CCCccccCCC-CCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc-CCCcEEEEccC
Confidence            667775 999 999997654 38999999999999999999999999998888899998554 55555 45566665 4 


Q ss_pred             CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHH
Q 025336           78 LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  157 (254)
Q Consensus        78 ~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  157 (254)
                      +|++|++++|+||.+|+ +|+++++++++.++++++|+++++++++   .++.+.+++.++++++|++||++|+. ....
T Consensus       153 ~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~v~~~~~~~~~d~vid~~g~~-~~~~  227 (324)
T cd08291         153 ASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAEYVLNSSD---PDFLEDLKELIAKLNATIFFDAVGGG-LTGQ  227 (324)
T ss_pred             ccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC---ccHHHHHHHHhCCCCCcEEEECCCcH-HHHH
Confidence            59999999999999999 8999999999999999999999999887   78888899888877999999999987 5678


Q ss_pred             HHHHcccCCcEEEEEccCCCcee-eccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEeecc
Q 025336          158 ALETTKVGKGKVIVIGVGVDTMV-PLNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHVKLE  233 (254)
Q Consensus       158 ~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                      .+++++++ |+++.+|...+... .++...++.+++++.++....+..   .+.+++++++++ +.  +++.++++|+|+
T Consensus       228 ~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~l~  303 (324)
T cd08291         228 ILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TE--LKTTFASRYPLA  303 (324)
T ss_pred             HHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Cc--cccceeeEEcHH
Confidence            89999999 99999997654222 355566667999999988654422   345777888887 66  667788999999


Q ss_pred             cHHHHHHHHcCCCe-eEEEEe
Q 025336          234 EIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       234 ~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      ++++||+.+.+++. +|++|.
T Consensus       304 ~~~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         304 LTLEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             HHHHHHHHHHhCCCCCeEEeC
Confidence            99999999988666 698873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=5.1e-33  Score=214.11  Aligned_cols=239  Identities=19%  Similarity=0.223  Sum_probs=202.2

Q ss_pred             CCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccc--cccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            3 DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSH--ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         3 ~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      +....|++ ||.|.+..+   |+||..++.+.+.|++++.-+..  ...+..+..|||.+|.+.+++++|++|+|.+| |
T Consensus        86 S~~~~f~~-GD~V~~~~G---Wq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaG  161 (340)
T COG2130          86 SNHPGFQP-GDIVVGVSG---WQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAG  161 (340)
T ss_pred             cCCCCCCC-CCEEEeccc---ceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEeccc
Confidence            35678999 999998765   99999999999999986532222  23367899999999999999999999999986 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      ++|..+.|+||..|+ +|+.+..++||.+++++ +|.|.++||+.   +++.+.+.+..+. ++|+.||++|++ .++..
T Consensus       162 aVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~---~d~~~~L~~a~P~-GIDvyfeNVGg~-v~DAv  235 (340)
T COG2130         162 AVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA---EDFAQALKEACPK-GIDVYFENVGGE-VLDAV  235 (340)
T ss_pred             ccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc---ccHHHHHHHHCCC-CeEEEEEcCCch-HHHHH
Confidence            999999999999999 99999999999999988 99999999999   8999999999886 999999999998 89999


Q ss_pred             HHHcccCCcEEEEEccCCC---ceee---ccHHHHHhCCCEEEeeecCC-CCC--CCCHHHHHHHHhCCCCCCCCceEEE
Q 025336          159 LETTKVGKGKVIVIGVGVD---TMVP---LNVIALACGGRTLKGTTFGG-IKT--KSDLPILLDKCKNKEFKLHQLLTHH  229 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~---~~~~---~~~~~~~~~~~~i~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  229 (254)
                      +..++.+ +|++.||..+.   ...+   -....++.+.+++.|+...+ +..  .+..+++.+|+.+|+|+.++  +.+
T Consensus       236 ~~~ln~~-aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~e--ti~  312 (340)
T COG2130         236 LPLLNLF-ARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRE--TIV  312 (340)
T ss_pred             HHhhccc-cceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEe--eeh
Confidence            9999999 99999997654   1122   22334666899999998733 221  35678899999999988876  445


Q ss_pred             eecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          230 VKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       230 ~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      -+||++++||..|.+|++ +|+|+++
T Consensus       313 dGlEnaP~Af~gLl~G~N~GK~vvKv  338 (340)
T COG2130         313 DGLENAPEAFIGLLSGKNFGKLVVKV  338 (340)
T ss_pred             hhhhccHHHHHHHhcCCccceEEEEe
Confidence            679999999999999998 5999874

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.5e-33  Score=228.70  Aligned_cols=239  Identities=23%  Similarity=0.336  Sum_probs=187.1

Q ss_pred             cccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhc------CCCCCCEEEEEcC-
Q 025336            6 SRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEA------EVEKGSSVAVLGL-   78 (254)
Q Consensus         6 ~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~------~~~~~~~vlI~G~-   78 (254)
                      ..+.. |+.+......|+|+||+++|+..++++|+++++++++++|.++.|||+++....      ++++|++|||+|+ 
T Consensus        89 ~~~~~-g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggs  167 (347)
T KOG1198|consen   89 GGWVH-GDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGS  167 (347)
T ss_pred             cceEe-eeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCC
Confidence            34445 666666666799999999999999999999999999999999999999998888      8999999999975 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      |++|++++|+|++.|+ ..+++.+++++.++++++|+++++||++   +++.+.+.+.+ +.+||+||||+|+. .....
T Consensus       168 ggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~~---~~~~e~~kk~~-~~~~DvVlD~vg~~-~~~~~  241 (347)
T KOG1198|consen  168 GGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYKD---ENVVELIKKYT-GKGVDVVLDCVGGS-TLTKS  241 (347)
T ss_pred             cHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCCC---HHHHHHHHhhc-CCCccEEEECCCCC-ccccc
Confidence            8999999999999995 4556669999999999999999999999   99999999988 66999999999997 56777


Q ss_pred             HHHcccCCcEEEEEccCCCceeeccHHH----HH---hCCCEEEeeecC---CCCCCCCHHHHHHHHhCCCCCCCCceEE
Q 025336          159 LETTKVGKGKVIVIGVGVDTMVPLNVIA----LA---CGGRTLKGTTFG---GIKTKSDLPILLDKCKNKEFKLHQLLTH  228 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~----~~---~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (254)
                      ..++... |+...++.............    +.   .....+.+....   .....+.++.+.+++++++  +++.+.+
T Consensus       242 ~~~l~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gk--ikp~i~~  318 (347)
T KOG1198|consen  242 LSCLLKG-GGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGK--IKPVIDS  318 (347)
T ss_pred             hhhhccC-CceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCc--ccCCcce
Confidence            7788777 76555554432111111000    00   011111111111   1122566888999999997  7788999


Q ss_pred             EeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          229 HVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      .||++++.+||+.+.++.. +|+++.+
T Consensus       319 ~~p~~~~~ea~~~~~~~~~~GK~vl~~  345 (347)
T KOG1198|consen  319 VYPFSQAKEAFEKLEKSHATGKVVLEK  345 (347)
T ss_pred             eeeHHHHHHHHHHHhhcCCcceEEEEe
Confidence            9999999999999887655 6998864

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=2.6e-32  Score=229.01  Aligned_cols=226  Identities=22%  Similarity=0.300  Sum_probs=179.0

Q ss_pred             cCcceeeEEecCC--ceEEcCCCCCc----cccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 025336           21 CSTWSEYMVIDAN--YVVRVDPSIDL----SHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA   94 (254)
Q Consensus        21 ~g~~a~~~~v~~~--~v~~~p~~~~~----~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~   94 (254)
                      +|+|+||+++|+.  .++++|++++.    .+++.+.+++.++|+++ .+.+++++++|||.|+|++|++++|+|+.+|+
T Consensus       132 ~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga  210 (393)
T TIGR02819       132 VGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGA  210 (393)
T ss_pred             CCceEEEEEechhhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4899999999964  69999997653    34667778899999987 56889999999999899999999999999999


Q ss_pred             CeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCCh--------------hHHHHHHH
Q 025336           95 AKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP--------------SLLSEALE  160 (254)
Q Consensus        95 ~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~--------------~~~~~~~~  160 (254)
                      +.+++++.++++.+.++++|++.+....+   .++.+.+.+.+++.++|++|||+|.+              ..++.+++
T Consensus       211 ~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~---~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~  287 (393)
T TIGR02819       211 AVVIVGDLNPARLAQARSFGCETVDLSKD---ATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLME  287 (393)
T ss_pred             ceEEEeCCCHHHHHHHHHcCCeEEecCCc---ccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHH
Confidence            55666677888999999999975433333   46777788888777899999999985              37899999


Q ss_pred             HcccCCcEEEEEccCCC-ce-----------eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceE-
Q 025336          161 TTKVGKGKVIVIGVGVD-TM-----------VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLT-  227 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~-~~-----------~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  227 (254)
                      +++++ |+++.+|.+.. ..           +++....+..+++++.|..   ....+++.++++++.+|++++.++++ 
T Consensus       288 ~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~---~~~~~~~~~~~~~~~~g~i~~~~~i~~  363 (393)
T TIGR02819       288 VTRVG-GAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRNLMQAILHDRVQIAKAVNV  363 (393)
T ss_pred             HhhCC-CEEEEeeecCCcccccccccccccccccchHHhhccCceEEecc---CChhhhHHHHHHHHHcCCCCHHHceec
Confidence            99999 99999998632 11           1233334444666666532   11123347899999999998887777 


Q ss_pred             EEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          228 HHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      ++|||+++++||+.+.+++.+|++|++
T Consensus       364 ~~~~l~~~~~a~~~~~~~~~~Kvvi~~  390 (393)
T TIGR02819       364 TVISLDDAPEGYAEFDAGAAKKFVIDP  390 (393)
T ss_pred             ceecHHHHHHHHHHHhhCCceEEEEeC
Confidence            689999999999999888778999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=5.3e-32  Score=226.01  Aligned_cols=227  Identities=40%  Similarity=0.700  Sum_probs=197.0

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|++|+.++++.++++|+++++++++.+++++.+||+++.....++++++|||+|+|++|++++++|+.+|+..|+++
T Consensus       135 ~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~  214 (365)
T cd05279         135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAV  214 (365)
T ss_pred             cccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            37899999999999999999999999999999999999998888899999999999889999999999999999557888


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCc--hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcc-cCCcEEEEEccCCC
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNK--SISELVKGITHGMGVDYCFECTGVPSLLSEALETTK-VGKGKVIVIGVGVD  177 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~--~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~-~~~G~~v~~g~~~~  177 (254)
                      ++++++.+.++++|+++++++++   .  ++.+.+.++++ .++|+++|++|....+..++++++ ++ |+++.+|....
T Consensus       215 ~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~~~l~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~  289 (365)
T cd05279         215 DINKDKFEKAKQLGATECINPRD---QDKPIVEVLTEMTD-GGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPS  289 (365)
T ss_pred             eCCHHHHHHHHHhCCCeeccccc---ccchHHHHHHHHhC-CCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCC
Confidence            88999999999999999998876   5  67777887775 589999999987668899999999 98 99999987642


Q ss_pred             -ceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEe
Q 025336          178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  253 (254)
Q Consensus       178 -~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  253 (254)
                       ....++...+ .++.++.|....++...+.+..++++++++.+++.+.+++.++++++++||+.+.+++..|++++
T Consensus       290 ~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~  365 (365)
T cd05279         290 GTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTILT  365 (365)
T ss_pred             CCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence             3456666666 58889999877666667789999999999998776677889999999999999988877788764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=6.1e-32  Score=225.63  Aligned_cols=227  Identities=30%  Similarity=0.531  Sum_probs=194.6

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|++|+++++..++++|+++++++++.++++++||+.++.....++++++|||+|+|++|++++|+|+..|+.+++++
T Consensus       138 ~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~  217 (365)
T cd08278         138 QSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAV  217 (365)
T ss_pred             ccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48899999999999999999999999999999999999998788889999999999889999999999999999669999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ce
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM  179 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  179 (254)
                      ++++++.+.++++|++.++++++   .++.+.+.+.+ +.++|+++||+|.+..+..++++++++ |+++.+|.... ..
T Consensus       218 ~~~~~k~~~~~~~g~~~~i~~~~---~~~~~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~  292 (365)
T cd08278         218 DIVDSRLELAKELGATHVINPKE---EDLVAAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAE  292 (365)
T ss_pred             eCCHHHHHHHHHcCCcEEecCCC---cCHHHHHHHHh-CCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCc
Confidence            89999999999999999998886   67778888877 568999999999766889999999999 99999997642 34


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEe
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  253 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  253 (254)
                      ..++...+..++.++.++........+.+++++++++++++++.+.+ ..++++++++|++.+.++...|++|+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~~k~~~~  365 (365)
T cd08278         293 VTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKVIKPVLR  365 (365)
T ss_pred             cccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCceEEEEC
Confidence            55666666568999988765433234567889999999997543344 47999999999999988877899874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=5.4e-32  Score=225.17  Aligned_cols=217  Identities=23%  Similarity=0.378  Sum_probs=181.3

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++|+..++++|+++++++++.+++++.|||+++......++|++++|+|+|++|++++|+||.+|+ +++++
T Consensus       132 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~  210 (357)
T PLN02514        132 QGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVI  210 (357)
T ss_pred             CCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEE
Confidence            48999999999999999999999999999999999999998666666899999999999999999999999999 78888


Q ss_pred             cCCcccHHHH-HhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCce
Q 025336          101 DKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTM  179 (254)
Q Consensus       101 ~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  179 (254)
                      +.++++.+.+ +++|++.++++.+   .   ..+.+.+.  ++|++|||+|....+..++++++++ |+++.+|.... .
T Consensus       211 ~~~~~~~~~~~~~~Ga~~~i~~~~---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~  280 (357)
T PLN02514        211 SSSDKKREEALEHLGADDYLVSSD---A---AEMQEAAD--SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVINT-P  280 (357)
T ss_pred             eCCHHHHHHHHHhcCCcEEecCCC---h---HHHHHhcC--CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCCC-C
Confidence            7777666554 6699988877654   2   23444432  7999999999766889999999999 99999998754 3


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      .+++...++.+++++.|+..+.   ..+++++++++++|++  ++.+ ++|||+++.+||+.+.+++. +|+||.+
T Consensus       281 ~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~~~~g~l--~~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~  350 (357)
T PLN02514        281 LQFVTPMLMLGRKVITGSFIGS---MKETEEMLEFCKEKGL--TSMI-EVVKMDYVNTAFERLEKNDVRYRFVVDV  350 (357)
T ss_pred             CcccHHHHhhCCcEEEEEecCC---HHHHHHHHHHHHhCCC--cCcE-EEEcHHHHHHHHHHHHcCCCceeEEEEc
Confidence            4566667777999999987543   3568999999999984  4555 58999999999999998877 5998864

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=2.9e-31  Score=221.97  Aligned_cols=230  Identities=38%  Similarity=0.657  Sum_probs=192.7

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++|+..++++|+++++++++++++++.+||+++....+++++++|||+|+|++|++++++++.+|+.+|+++
T Consensus       142 ~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~  221 (373)
T cd08299         142 TSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAV  221 (373)
T ss_pred             CCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48899999999999999999999999999999999999998788899999999999989999999999999998679999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHc-ccCCcEEEEEccCCC-c
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT-KVGKGKVIVIGVGVD-T  178 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~-~  178 (254)
                      ++++++++.++++|++++++..+ ...+....+.+++++ ++|.++||+|++..+..++..+ +++ |+++.+|.... .
T Consensus       222 ~~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~-~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~  298 (373)
T cd08299         222 DINKDKFAKAKELGATECINPQD-YKKPIQEVLTEMTDG-GVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQ  298 (373)
T ss_pred             cCCHHHHHHHHHcCCceEecccc-cchhHHHHHHHHhCC-CCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCc
Confidence            99999999999999999998764 112366777777664 8999999999766777767665 567 99999997654 2


Q ss_pred             eeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          179 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       179 ~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      ..++++..+. ++.++.++..+.+.+...+.++++.+.++.+++++.+++.|+++++++||+.+.+++..|+++++
T Consensus       299 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~  373 (373)
T cd08299         299 NLSINPMLLL-TGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF  373 (373)
T ss_pred             eeecCHHHHh-cCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence            4555554344 78899998876655556777888888888777777788899999999999999887777988864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=4.7e-32  Score=221.19  Aligned_cols=225  Identities=18%  Similarity=0.248  Sum_probs=178.1

Q ss_pred             CCCCcccccCCceeeeee---------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCE
Q 025336            2 LDGTSRMSVRGQKLYHIF---------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSS   72 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~   72 (254)
                      |+++ .|++ ||+|+...         ..|+|+||+++|++.++++|+.++++. +.+ .++.|||+++.. . ..++++
T Consensus        74 G~~v-~~~v-GdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~~~a~~~~~~-~-~~~~~~  147 (308)
T TIGR01202        74 GPDT-GFRP-GDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALAATARHAVAG-A-EVKVLP  147 (308)
T ss_pred             cCCC-CCCC-CCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHHHHHHHHHHh-c-ccCCCc
Confidence            5666 5999 99998521         149999999999999999999998864 444 457899999843 3 336889


Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCCh
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  152 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  152 (254)
                      +||+|+|++|++++|+||.+|+..|++++.++++++.++++   .++++.+   .          .+.++|++|||+|++
T Consensus       148 vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~~~---~----------~~~g~Dvvid~~G~~  211 (308)
T TIGR01202       148 DLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDPEK---D----------PRRDYRAIYDASGDP  211 (308)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccChhh---c----------cCCCCCEEEECCCCH
Confidence            99999999999999999999995566777777776665543   4555432   1          234899999999997


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeec
Q 025336          153 SLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKL  232 (254)
Q Consensus       153 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (254)
                      ..++.++++++++ |+++.+|.... ..++++..++.+++++.++..+   ..++++++++++++|+++++++++++|||
T Consensus       212 ~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~g~i~~~~~it~~~~l  286 (308)
T TIGR01202       212 SLIDTLVRRLAKG-GEIVLAGFYTE-PVNFDFVPAFMKEARLRIAAEW---QPGDLHAVRELIESGALSLDGLITHQRPA  286 (308)
T ss_pred             HHHHHHHHhhhcC-cEEEEEeecCC-CcccccchhhhcceEEEEeccc---chhHHHHHHHHHHcCCCChhhccceeecH
Confidence            6789999999999 99999998654 3455555666688999887533   24679999999999999888889999999


Q ss_pred             ccHHHHHHHHcCCC-eeEEEEe
Q 025336          233 EEIDKAIQLLKQPD-CVKVLIT  253 (254)
Q Consensus       233 ~~~~~a~~~~~~~~-~~k~vi~  253 (254)
                      +++++||+.+.++. .+|++|+
T Consensus       287 ~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       287 SDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             HHHHHHHHHHhcCcCceEEEeC
Confidence            99999999876554 4799874

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=2.1e-31  Score=221.77  Aligned_cols=218  Identities=28%  Similarity=0.337  Sum_probs=171.7

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHH------HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW------KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA   94 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~------~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~   94 (254)
                      +|+|+||+++|+..++++|++++ ++ +.+..++.+++.++.      ....++++++|||+|+|++|++++|+||.+|+
T Consensus       120 ~G~~aey~~~~~~~~~~~P~~~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~  197 (355)
T cd08230         120 HGFMREYFVDDPEYLVKVPPSLA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF  197 (355)
T ss_pred             CccceeEEEeccccEEECCCCCC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            48899999999999999999998 44 444456655554432      22336789999999999999999999999999


Q ss_pred             CeEEEEcC---CcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEE
Q 025336           95 AKIIGIDK---NPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus        95 ~~v~~v~~---~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  171 (254)
                       +|+++++   ++++.+.++++|++. +++.+   +++.+ .+  . ..++|++|||+|.+..+..+++.++++ |+++.
T Consensus       198 -~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~---~~~~~-~~--~-~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~  267 (355)
T cd08230         198 -EVYVLNRRDPPDPKADIVEELGATY-VNSSK---TPVAE-VK--L-VGEFDLIIEATGVPPLAFEALPALAPN-GVVIL  267 (355)
T ss_pred             -eEEEEecCCCCHHHHHHHHHcCCEE-ecCCc---cchhh-hh--h-cCCCCEEEECcCCHHHHHHHHHHccCC-cEEEE
Confidence             8999987   678999999999986 56655   44433 21  1 238999999999876789999999999 99999


Q ss_pred             EccCCC-ceeecc----HHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCC----CCCCceEEEeecccHHHHHHHH
Q 025336          172 IGVGVD-TMVPLN----VIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEF----KLHQLLTHHVKLEEIDKAIQLL  242 (254)
Q Consensus       172 ~g~~~~-~~~~~~----~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~  242 (254)
                      +|...+ ...+++    ...++.+++++.|+...   ..++++++++++.++.+    .++++++++|+++++++||+.+
T Consensus       268 ~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~  344 (355)
T cd08230         268 FGVPGGGREFEVDGGELNRDLVLGNKALVGSVNA---NKRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEK  344 (355)
T ss_pred             EecCCCCCccccChhhhhhhHhhcCcEEEEecCC---chhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhc
Confidence            998765 344454    34566799999998643   24678999999988772    3667889999999999999988


Q ss_pred             cCCCeeEEEEeC
Q 025336          243 KQPDCVKVLITI  254 (254)
Q Consensus       243 ~~~~~~k~vi~~  254 (254)
                      .++. +|++|++
T Consensus       345 ~~~~-~K~v~~~  355 (355)
T cd08230         345 PDGE-IKVVIEW  355 (355)
T ss_pred             ccCC-eEEEeeC
Confidence            7654 5999874

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=4.6e-31  Score=219.46  Aligned_cols=245  Identities=24%  Similarity=0.385  Sum_probs=202.2

Q ss_pred             CCCCcccccCCceeeeee------------------------------ccCcceeeEEecCC--ceEEcCCCCCcccccc
Q 025336            2 LDGTSRMSVRGQKLYHIF------------------------------SCSTWSEYMVIDAN--YVVRVDPSIDLSHASF   49 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~------------------------------~~g~~a~~~~v~~~--~v~~~p~~~~~~~aa~   49 (254)
                      |+++.++++ ||+|+...                              ..|+|+||+.+|..  .++++|+++++++++.
T Consensus        69 G~~v~~~~~-Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~  147 (351)
T cd08285          69 GSEVKDFKP-GDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVM  147 (351)
T ss_pred             cCCcCccCC-CCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhh
Confidence            667778899 99998632                              24899999999974  8999999999999999


Q ss_pred             ccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchH
Q 025336           50 LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSI  129 (254)
Q Consensus        50 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  129 (254)
                      ++.+++||++++ ...+++++++|||+|+|++|++++|+|+.+|+..|+++++++++.+.++++|++.++++.+   .++
T Consensus       148 ~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~  223 (351)
T cd08285         148 LPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN---GDV  223 (351)
T ss_pred             hccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC---CCH
Confidence            999999999996 7788999999999988999999999999999966899989999999999999999999887   778


Q ss_pred             HHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccH--HHHHhCCCEEEeeecCCCCCCC
Q 025336          130 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNV--IALACGGRTLKGTTFGGIKTKS  206 (254)
Q Consensus       130 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~--~~~~~~~~~i~g~~~~~~~~~~  206 (254)
                      ...+.++.++.++|+++||+|++..+..++++++++ |+++.+|.... ....++.  .....+..++.+....  ...+
T Consensus       224 ~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~  300 (351)
T cd08285         224 VEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCP--GGRL  300 (351)
T ss_pred             HHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCceeecChhhhhhhccccEEEEeecC--Cccc
Confidence            888888777778999999999876889999999999 99999997664 2334432  2223356666654321  1356


Q ss_pred             CHHHHHHHHhCCCCCCCC-ceEEEeecccHHHHHHHHcCCCe--eEEEEeC
Q 025336          207 DLPILLDKCKNKEFKLHQ-LLTHHVKLEEIDKAIQLLKQPDC--VKVLITI  254 (254)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~--~k~vi~~  254 (254)
                      .++++++++++|++++.. .+.+.++++++++||+.+.+++.  +|++|.+
T Consensus       301 ~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         301 RMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             cHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            799999999999987743 34456899999999999988763  6999874

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=1.3e-31  Score=220.48  Aligned_cols=235  Identities=17%  Similarity=0.177  Sum_probs=191.6

Q ss_pred             cccccCCceeeeeeccCcceeeEEecCCceEEc----CCCCCcccc-ccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            6 SRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRV----DPSIDLSHA-SFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         6 ~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~----p~~~~~~~a-a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      ..|++ ||+|+++   ++|++|++++.+.+.++    |++++++++ ++++++++|||+++....++++|++|||+|+ |
T Consensus        74 ~~~~~-GdrV~~~---~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g  149 (325)
T TIGR02825        74 VALPK-GTIVLAS---PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAG  149 (325)
T ss_pred             CCCCC-CCEEEEe---cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCcc
Confidence            45888 9999975   46999999999888887    899999987 6788999999999888899999999999985 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc-hHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK-SISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      ++|++++|+||..|+ +|+++++++++.++++++|++.++++++   . ++.+.+++..+ +++|++|||+|++ .+..+
T Consensus       150 ~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~---~~~~~~~~~~~~~-~gvdvv~d~~G~~-~~~~~  223 (325)
T TIGR02825       150 AVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT---VKSLEETLKKASP-DGYDCYFDNVGGE-FSNTV  223 (325)
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc---cccHHHHHHHhCC-CCeEEEEECCCHH-HHHHH
Confidence            999999999999999 8999999999999999999999999875   3 45556666554 4899999999987 67999


Q ss_pred             HHHcccCCcEEEEEccCCC-c---eee--ccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEE
Q 025336          159 LETTKVGKGKVIVIGVGVD-T---MVP--LNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHH  229 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~-~---~~~--~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  229 (254)
                      +++++++ |+++.+|...+ .   ..+  .....+.++++++.++....+..   .+.++++++++++|++++.  +...
T Consensus       224 ~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~  300 (325)
T TIGR02825       224 IGQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYK--EYVI  300 (325)
T ss_pred             HHHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccc--eecc
Confidence            9999999 99999987542 1   111  12334556888888876433211   2357889999999996654  4456


Q ss_pred             eecccHHHHHHHHcCCCe-eEEEEe
Q 025336          230 VKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       230 ~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      |+++++++|++.+.+++. +|+|++
T Consensus       301 ~~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       301 EGFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             ccHHHHHHHHHHHhcCCCCCeEEeC
Confidence            899999999999988776 588874

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=2.9e-31  Score=218.33  Aligned_cols=242  Identities=20%  Similarity=0.206  Sum_probs=204.9

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |+++..+++ ||+|+++...|+|++|+.+++..++++|+++++++++.++..+.+||+++ ...++++|++|||+|+ |.
T Consensus        74 G~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~  151 (324)
T cd08292          74 GEGVKGLQV-GQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGA  151 (324)
T ss_pred             CCCCCCCCC-CCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccH
Confidence            667778999 99999876469999999999999999999999999999988999999987 5688999999999986 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                      +|++++|+|+.+|+ +++++..++++.+.++++|++.++++++   .++...+.+.++++++|++|||+|+. ....+++
T Consensus       152 ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~  226 (324)
T cd08292         152 VGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVSTEQ---PGWQDKVREAAGGAPISVALDSVGGK-LAGELLS  226 (324)
T ss_pred             HHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEcCCC---chHHHHHHHHhCCCCCcEEEECCCCh-hHHHHHH
Confidence            99999999999999 8899888888889888899999998887   78888899998888999999999986 6789999


Q ss_pred             HcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC-------CCCHHHHHHHHhCCCCCCCCceEEEeecc
Q 025336          161 TTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPILLDKCKNKEFKLHQLLTHHVKLE  233 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                      +++++ |+++.+|.......++++..+..++.++.++....+..       ...++.+++++.++.+++.  +.+.|+++
T Consensus       227 ~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~~  303 (324)
T cd08292         227 LLGEG-GTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDLG  303 (324)
T ss_pred             hhcCC-cEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecHH
Confidence            99999 99999987543344555555666999999987543221       2357889999999996643  46789999


Q ss_pred             cHHHHHHHHcCCCe-eEEEEe
Q 025336          234 EIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       234 ~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      ++.+||+.+.++.. .|++++
T Consensus       304 ~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         304 DAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             HHHHHHHHHHcCCCCceEEeC
Confidence            99999999877655 588763

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=3.2e-31  Score=224.28  Aligned_cols=247  Identities=20%  Similarity=0.228  Sum_probs=195.0

Q ss_pred             CCCCCc-ccccCCceeeeee----------------ccCcceeeEEecCC----ceEEcCCCCCccccccc-cch-hhhh
Q 025336            1 MLDGTS-RMSVRGQKLYHIF----------------SCSTWSEYMVIDAN----YVVRVDPSIDLSHASFL-SCG-FTTG   57 (254)
Q Consensus         1 ~g~~~~-~~~~~Gd~v~~~~----------------~~g~~a~~~~v~~~----~v~~~p~~~~~~~aa~~-~~~-~~ta   57 (254)
                      +|+++. +|++ ||+|+...                .+|+|+||+++|+.    .++++|+++++++++.+ +.. ..++
T Consensus        77 vG~~v~~~~~v-GdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~  155 (410)
T cd08238          77 VGKKWQGKYKP-GQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGA  155 (410)
T ss_pred             eCCCccCCCCC-CCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHH
Confidence            367776 5999 99997531                24899999999986    68999999999988865 211 1123


Q ss_pred             hHHH--------HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHcC--CCeEEEEcCCcccHHHHHhc--------CCc-e
Q 025336           58 FGAA--------WKEAEVEKGSSVAVLG-LGTVGLGAVDGARMQG--AAKIIGIDKNPWKKEKGEAF--------GMT-D  117 (254)
Q Consensus        58 ~~~l--------~~~~~~~~~~~vlI~G-~g~~G~~~~~~a~~~g--~~~v~~v~~~~~~~~~~~~~--------g~~-~  117 (254)
                      +.++        ..+.++++|++|+|+| +|++|++++|+||.+|  +.+|++++.++++++.++++        |++ .
T Consensus       156 ~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~  235 (410)
T cd08238         156 YTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELL  235 (410)
T ss_pred             hhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEE
Confidence            3332        2457889999999997 5999999999999975  44799999999999999997        766 4


Q ss_pred             EeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC-C-ceeeccHHHHHhCCCEEE
Q 025336          118 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV-D-TMVPLNVIALACGGRTLK  195 (254)
Q Consensus       118 v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-~-~~~~~~~~~~~~~~~~i~  195 (254)
                      ++++++  .+++.+.+++++++.++|++||++|.+..+..++++++++ |+++.++... . ...+++...++.+++++.
T Consensus       236 ~i~~~~--~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~  312 (410)
T cd08238         236 YVNPAT--IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCLNFFAGPVDKNFSAPLNFYNVHYNNTHYV  312 (410)
T ss_pred             EECCCc--cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeEEEEEccCCCCccccccHHHhhhcCcEEE
Confidence            677653  1467778888888879999999999877899999999998 8887765432 2 234667777778999999


Q ss_pred             eeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          196 GTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       196 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      |+..+   ...+++++++++++|++++.++++++|||+++++||+.+..+..+|+||.+
T Consensus       313 g~~~~---~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~gKvvl~~  368 (410)
T cd08238         313 GTSGG---NTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLPGIPGGKKLIYT  368 (410)
T ss_pred             EeCCC---CHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhhccCCceEEEEC
Confidence            98643   245789999999999998888999999999999999999844446999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=2.9e-31  Score=218.76  Aligned_cols=237  Identities=20%  Similarity=0.201  Sum_probs=193.7

Q ss_pred             CcccccCCceeeeeeccCcceeeEEecCC---ceEEcCCCCC--c---cccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            5 TSRMSVRGQKLYHIFSCSTWSEYMVIDAN---YVVRVDPSID--L---SHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         5 ~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~---~v~~~p~~~~--~---~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +..|++ ||+|+++   ++|++|+++++.   .++++|++++  +   ..+++++.+++|||+++....++++|++|||+
T Consensus        75 ~~~~~~-Gd~V~~~---~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~  150 (329)
T cd08294          75 NSKFPV-GTIVVAS---FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVN  150 (329)
T ss_pred             CCCCCC-CCEEEee---CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            356888 9999864   469999999999   9999999988  2   22346788999999999888999999999999


Q ss_pred             cC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHH
Q 025336           77 GL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  155 (254)
Q Consensus        77 G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  155 (254)
                      |+ |++|++++|+|+.+|+ +|+++++++++.++++++|+++++++++   .++.+.+++.++ .++|++||++|+. .+
T Consensus       151 ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~---~~~~~~v~~~~~-~gvd~vld~~g~~-~~  224 (329)
T cd08294         151 GAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKT---VSLEEALKEAAP-DGIDCYFDNVGGE-FS  224 (329)
T ss_pred             cCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHCC-CCcEEEEECCCHH-HH
Confidence            85 9999999999999999 8999999999999999999999999987   788888888776 5899999999985 78


Q ss_pred             HHHHHHcccCCcEEEEEccCCC-ce-----eeccHHHHHhCCCEEEeeecCCCC--CCCCHHHHHHHHhCCCCCCCCceE
Q 025336          156 SEALETTKVGKGKVIVIGVGVD-TM-----VPLNVIALACGGRTLKGTTFGGIK--TKSDLPILLDKCKNKEFKLHQLLT  227 (254)
Q Consensus       156 ~~~~~~l~~~~G~~v~~g~~~~-~~-----~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
                      ..++++++++ |+++.+|.... ..     .......+..+++++.++....+.  ..+.+++++++++++++++.  ..
T Consensus       225 ~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~  301 (329)
T cd08294         225 STVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR--EH  301 (329)
T ss_pred             HHHHHhhccC-CEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC--cc
Confidence            9999999999 99999985432 11     122233456688999887654321  12346778899999997654  33


Q ss_pred             EEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          228 HHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ..++++++++|++.+.+++. +|+|+++
T Consensus       302 ~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         302 VTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             cccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            46899999999999988776 5999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=1.7e-31  Score=203.94  Aligned_cols=233  Identities=19%  Similarity=0.220  Sum_probs=193.4

Q ss_pred             CCCCCcccccCCceeeeee-ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-
Q 025336            1 MLDGTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-   78 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-   78 (254)
                      +|+++..|++ ||.|+-.. +.|+|++|.+.+++.++++++.++++.||++.++.+|||.+|.+..++++|++|.-.|+ 
T Consensus        92 vGs~vkgfk~-Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNgan  170 (354)
T KOG0025|consen   92 VGSNVKGFKP-GDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGAN  170 (354)
T ss_pred             ecCCcCccCC-CCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcc
Confidence            4788888999 99998543 44999999999999999999999999999999999999999999999999999988887 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      +++|++.+|+||++|+ +.+.+.|+....+.+    +.+||++||...+.   .-.+..+......++.+.+||+|+. +
T Consensus       171 S~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel---~~~~~~k~~~~~~~prLalNcVGGk-s  245 (354)
T KOG0025|consen  171 SGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQLKSLGATEVITEEEL---RDRKMKKFKGDNPRPRLALNCVGGK-S  245 (354)
T ss_pred             cHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHHHHcCCceEecHHHh---cchhhhhhhccCCCceEEEeccCch-h
Confidence            9999999999999999 788888998777765    45899999965441   1111112222345899999999998 5


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCC--------CCHHHHHHHHhCCCCCCCCce
Q 025336          155 LSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTK--------SDLPILLDKCKNKEFKLHQLL  226 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  226 (254)
                      ...+.+.|.++ |.++.||..+.++.+++...++++++.++|+++..|...        +.+.++.+++.+|++...+  
T Consensus       246 a~~iar~L~~G-gtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~--  322 (354)
T KOG0025|consen  246 ATEIARYLERG-GTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPN--  322 (354)
T ss_pred             HHHHHHHHhcC-ceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeecccc--
Confidence            57888999999 999999998888888998899999999999999888642        3466788999999965443  


Q ss_pred             EEEeecccHHHHHHHH
Q 025336          227 THHVKLEEIDKAIQLL  242 (254)
Q Consensus       227 ~~~~~~~~~~~a~~~~  242 (254)
                      ....+|++...|++..
T Consensus       323 ~e~v~L~~~~tald~~  338 (354)
T KOG0025|consen  323 CEKVPLADHKTALDAA  338 (354)
T ss_pred             ceeeechhhhHHHHHH
Confidence            3567898887877744

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=4.6e-31  Score=219.01  Aligned_cols=243  Identities=20%  Similarity=0.245  Sum_probs=188.5

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccc----cccccchhhhhhHHHHHhcCCCCC--CEEE
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSH----ASFLSCGFTTGFGAAWKEAEVEKG--SSVA   74 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~--~~vl   74 (254)
                      +|+++..|++ ||+|+++.  ++|+||+++|++.++++|+++++++    +++++.++.|||+++....+++++  ++||
T Consensus        83 vG~~v~~~~~-Gd~V~~~~--~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~Vl  159 (345)
T cd08293          83 EESKHQKFAV-GDIVTSFN--WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMV  159 (345)
T ss_pred             eccCCCCCCC-CCEEEecC--CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEE
Confidence            3678888999 99998753  6799999999999999999865433    445678899999998777788876  9999


Q ss_pred             EEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCCh
Q 025336           75 VLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  152 (254)
Q Consensus        75 I~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  152 (254)
                      |+|+ |++|++++|+||.+|+.+|++++.++++.+++++ +|+++++++++   .++.+.++++++ +++|++|||+|+.
T Consensus       160 I~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~~~-~gvd~vid~~g~~  235 (345)
T cd08293         160 VSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT---DNVAERLRELCP-EGVDVYFDNVGGE  235 (345)
T ss_pred             EECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC---CCHHHHHHHHCC-CCceEEEECCCcH
Confidence            9987 9999999999999998569999899999999876 99999999887   788888888876 5899999999987


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCC--cee----ecc--HHHHH-hCCCEEEeeecCCCCC--CCCHHHHHHHHhCCCCC
Q 025336          153 SLLSEALETTKVGKGKVIVIGVGVD--TMV----PLN--VIALA-CGGRTLKGTTFGGIKT--KSDLPILLDKCKNKEFK  221 (254)
Q Consensus       153 ~~~~~~~~~l~~~~G~~v~~g~~~~--~~~----~~~--~~~~~-~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~  221 (254)
                       .+..++++++++ |+++.+|....  ...    .+.  ...+. .++++..+........  .+.++++++++++++++
T Consensus       236 -~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~  313 (345)
T cd08293         236 -ISDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLK  313 (345)
T ss_pred             -HHHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCcc
Confidence             679999999999 99999985321  111    111  11122 2344443332221111  23466788899999966


Q ss_pred             CCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          222 LHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       222 ~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +.  ....++++++++||+.+.+++. +|+|+++
T Consensus       314 ~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         314 VK--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             ce--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            44  4445699999999999988776 5999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=1.9e-30  Score=216.65  Aligned_cols=228  Identities=36%  Similarity=0.631  Sum_probs=195.9

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|++|+.++++.++++|+++++++++.+++++.+||.++....++.++++|||+|+|++|++++++++..|+.+|+++
T Consensus       134 ~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~  213 (363)
T cd08279         134 LGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAV  213 (363)
T ss_pred             CccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence            48999999999999999999999999999999999999998888899999999999889999999999999999448999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ce
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM  179 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  179 (254)
                      +.++++.+.++++|++++++++.   .++...+.++..++++|+++|++++...+...+++++++ |+++.+|.... ..
T Consensus       214 ~~~~~~~~~~~~~g~~~vv~~~~---~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~  289 (363)
T cd08279         214 DPVPEKLELARRFGATHTVNASE---DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGET  289 (363)
T ss_pred             cCCHHHHHHHHHhCCeEEeCCCC---ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcc
Confidence            89999999999999999998886   678888888876668999999999766789999999999 99999987653 34


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEE
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI  252 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  252 (254)
                      ..++...+..++..+.++.++.....+.+++++++++++.++..+.+.++++++++++||+.+.+++..|.||
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         290 VSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             cccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            5566666666788888876554344567889999999999776555777899999999999998887766665

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1.8e-31  Score=220.72  Aligned_cols=228  Identities=19%  Similarity=0.244  Sum_probs=179.2

Q ss_pred             cccccCCceeeeee------------------------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHH
Q 025336            6 SRMSVRGQKLYHIF------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAA   61 (254)
Q Consensus         6 ~~~~~~Gd~v~~~~------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l   61 (254)
                      ..|++ ||+|+...                        .+|+|+||+++|++.++++|+++++++|+.+ .+++++++++
T Consensus        76 ~~~~v-GdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~-~~~~~a~~a~  153 (341)
T cd08237          76 GTYKV-GTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFT-ELVSVGVHAI  153 (341)
T ss_pred             CccCC-CCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhhh-chHHHHHHHH
Confidence            36889 99997421                        2488999999999999999999999987755 6888999987


Q ss_pred             HH--hcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           62 WK--EAEVEKGSSVAVLGLGTVGLGAVDGARM-QGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        62 ~~--~~~~~~~~~vlI~G~g~~G~~~~~~a~~-~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ..  ...+++|++|||+|+|++|++++|+++. .|..+|++++++++|++.+++.+++..++       ++       ..
T Consensus       154 ~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~-------~~-------~~  219 (341)
T cd08237         154 SRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLID-------DI-------PE  219 (341)
T ss_pred             HHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehh-------hh-------hh
Confidence            53  3456889999999999999999999996 66558999999999999998766553321       11       11


Q ss_pred             CCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHH
Q 025336          139 GMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKC  215 (254)
Q Consensus       139 ~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~  215 (254)
                      ..++|++||++|+   +..+..++++++++ |+++.+|.... ..++++..++.+++++.|+...   ...+++++++++
T Consensus       220 ~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~~~  294 (341)
T cd08237         220 DLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVSEY-PVPINTRMVLEKGLTLVGSSRS---TREDFERAVELL  294 (341)
T ss_pred             ccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeecCC-CcccCHHHHhhCceEEEEeccc---CHHHHHHHHHHH
Confidence            2279999999994   45789999999999 99999997543 4566666777799999998643   245689999999


Q ss_pred             hCC---CCCCCCceEEEeecc---cHHHHHHHHcCCCeeEEEEeC
Q 025336          216 KNK---EFKLHQLLTHHVKLE---EIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       216 ~~~---~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +++   ..+++++++++|+++   ++.++|+.+.++..+|+||++
T Consensus       295 ~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~  339 (341)
T cd08237         295 SRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEW  339 (341)
T ss_pred             HhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEe
Confidence            999   335788899999985   566667666655457999864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.98  E-value=4.5e-30  Score=213.08  Aligned_cols=244  Identities=27%  Similarity=0.379  Sum_probs=205.4

Q ss_pred             CCCCCcccccCCceeeeee----------------------------ccCcceeeEEecCC--ceEEcCCCCCccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDAN--YVVRVDPSIDLSHASFL   50 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~--~v~~~p~~~~~~~aa~~   50 (254)
                      +|+++.++++ ||+|+...                            ..|+|++|+.+++.  .++++|+++++.+++.+
T Consensus        69 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l  147 (345)
T cd08286          69 VGSAVTNFKV-GDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVML  147 (345)
T ss_pred             eccCccccCC-CCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhc
Confidence            3667778899 99997532                            12889999999987  89999999999999999


Q ss_pred             cchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHH
Q 025336           51 SCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSIS  130 (254)
Q Consensus        51 ~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  130 (254)
                      +..++|||.++....++.++++|||+|+|++|++++|+++.+|+.+|+++++++++.+.++++|++.++++++   .++.
T Consensus       148 ~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~  224 (345)
T cd08286         148 SDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK---GDAI  224 (345)
T ss_pred             cchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc---ccHH
Confidence            9999999998777888999999999988999999999999999438999988889999999999999999886   6777


Q ss_pred             HHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHH
Q 025336          131 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPI  210 (254)
Q Consensus       131 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  210 (254)
                      ..+.++..+.++|+++||++....+..+++.++++ |+++.+|.... ..++++..++.+++++.+....    ...++.
T Consensus       225 ~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  298 (345)
T cd08286         225 EQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGK-PVDLHLEKLWIKNITITTGLVD----TNTTPM  298 (345)
T ss_pred             HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccCC-CCCcCHHHHhhcCcEEEeecCc----hhhHHH
Confidence            77888777778999999999776889999999999 99999987543 3555666656689999875422    245888


Q ss_pred             HHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCC---CeeEEEEeC
Q 025336          211 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP---DCVKVLITI  254 (254)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~k~vi~~  254 (254)
                      ++++++++.++..+++++++++++++++|+.+.+.   +..|++|++
T Consensus       299 ~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         299 LLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             HHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            99999999977666677899999999999999876   346999975

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.98  E-value=2.7e-30  Score=213.38  Aligned_cols=235  Identities=22%  Similarity=0.336  Sum_probs=199.0

Q ss_pred             CCCCcccccCCceeee----------------------------eeccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYH----------------------------IFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~----------------------------~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |+++..|++ ||+|+.                            +...|+|++|+.+++..++++|+++++++++.++++
T Consensus        70 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~  148 (333)
T cd08296          70 GEGVSRWKV-GDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCA  148 (333)
T ss_pred             CCCCccCCC-CCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhh
Confidence            566677888 999974                            222489999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.|||+++. ..+++++++|||+|+|++|++++++|+.+|+ +|+++++++++.++++++|+++++++.+   .++...+
T Consensus       149 ~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~  223 (333)
T cd08296         149 GVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK---EDVAEAL  223 (333)
T ss_pred             hHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC---ccHHHHH
Confidence            999999984 4589999999999999999999999999999 8999999999999999999999998876   6677767


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      .+.   .++|+++|+.|....+..++++++++ |+++.+|.... ..+++...++.+++++.+...+   ...++..+++
T Consensus       224 ~~~---~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~  295 (333)
T cd08296         224 QEL---GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAAGE-PVAVSPLQLIMGRKSIHGWPSG---TALDSEDTLK  295 (333)
T ss_pred             Hhc---CCCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCCC-CCCcCHHHHhhcccEEEEeCcC---CHHHHHHHHH
Confidence            665   27999999997666889999999999 99999998654 4556666667799999998633   2456888889


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      +++++++  ++.+ +.|+++++.+||+.+.+++. +|+||+
T Consensus       296 ~~~~~~l--~~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         296 FSALHGV--RPMV-ETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             HHHhCCC--CceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence            9988874  4445 57999999999999988877 698874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.98  E-value=3.7e-30  Score=213.15  Aligned_cols=238  Identities=22%  Similarity=0.330  Sum_probs=200.7

Q ss_pred             CCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..|++ ||+|.++.                           ..|+|++|+.++++.++++|+++++++++.++..+
T Consensus        73 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~  151 (340)
T cd05284          73 GSGVDGLKE-GDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAG  151 (340)
T ss_pred             CCCCCcCcC-CCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchH
Confidence            667778999 99998642                           24899999999999999999999999999999999


Q ss_pred             hhhhHHHHHh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           55 TTGFGAAWKE-AEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        55 ~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      +|||+++... ..+.++++|||+|+|++|++++|+|+..| . +|+++++++++.+.++++|+++++++++   . +...
T Consensus       152 ~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~  226 (340)
T cd05284         152 LTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVLNASD---D-VVEE  226 (340)
T ss_pred             HHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEEcCCc---c-HHHH
Confidence            9999998665 46888999999999889999999999999 6 8999989999999999999999998886   5 7788


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      ++++.++.++|+++|++|++..+..++++++++ |+++.+|....  .+++...++.+++++.+....   ....+.+++
T Consensus       227 i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  300 (340)
T cd05284         227 VRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH--GRLPTSDLVPTEISVIGSLWG---TRAELVEVV  300 (340)
T ss_pred             HHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC--CccCHHHhhhcceEEEEEecc---cHHHHHHHH
Confidence            888877778999999999766789999999999 99999987643  344444444589999887643   245688899


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++.+++  . .+.|+++++++|++.+.+++. +|+++.+
T Consensus       301 ~~l~~g~l~~--~-~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         301 ALAESGKVKV--E-ITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             HHHHhCCCCc--c-eEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence            9999998653  3 457999999999999988776 5888764

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.98  E-value=2.5e-30  Score=218.06  Aligned_cols=244  Identities=17%  Similarity=0.221  Sum_probs=200.4

Q ss_pred             CCCCCcccccCCceeeeee----------------------------ccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++..+++ ||+|+...                            ..|+|++|+++|+..++++|+++++++++.+++
T Consensus        96 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~  174 (393)
T cd08246          96 VGEGVKNWKV-GDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYML  174 (393)
T ss_pred             eCCCCCcCCC-CCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhcc
Confidence            3677778899 99998653                            238999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHh--cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCC----
Q 025336           53 GFTTGFGAAWKE--AEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEP----  125 (254)
Q Consensus        53 ~~~ta~~~l~~~--~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~----  125 (254)
                      ++.|||+++...  .+++++++|+|+|+ |++|++++++++.+|+ ++++++.++++.+.++++|+++++++++.+    
T Consensus       175 ~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~  253 (393)
T cd08246         175 VGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGV  253 (393)
T ss_pred             cHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCCEEEcccccccccc
Confidence            999999998544  67899999999997 9999999999999999 788888999999999999999999875410    


Q ss_pred             ---------------CchHHHHHHHhhCCC-CccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHh
Q 025336          126 ---------------NKSISELVKGITHGM-GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALAC  189 (254)
Q Consensus       126 ---------------~~~~~~~i~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  189 (254)
                                     ...+.+.+.+++++. ++|+++||+|+. .+..++++++++ |+++.+|.......+++...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~l~~  331 (393)
T cd08246         254 LPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRA-TFPTSVFVCDRG-GMVVICAGTTGYNHTYDNRYLWM  331 (393)
T ss_pred             cccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchH-hHHHHHHHhccC-CEEEEEcccCCCCCCCcHHHHhh
Confidence                           012566778888877 899999999985 789999999999 99999987544223445555666


Q ss_pred             CCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCC-Ce-eEEEEe
Q 025336          190 GGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP-DC-VKVLIT  253 (254)
Q Consensus       190 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~-~k~vi~  253 (254)
                      ++.++.++....   .+.+.+++++++++.+.  +.++++|++++++++|+.+.++ .. +|+++-
T Consensus       332 ~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv~  392 (393)
T cd08246         332 RQKRIQGSHFAN---DREAAEANRLVMKGRID--PCLSKVFSLDETPDAHQLMHRNQHHVGNMAVL  392 (393)
T ss_pred             heeEEEecccCc---HHHHHHHHHHHHcCCce--eeeeEEEeHHHHHHHHHHHHhCccccceEEEe
Confidence            888888876442   34688899999999854  4467889999999999999887 55 588763

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=4.8e-30  Score=214.54  Aligned_cols=227  Identities=29%  Similarity=0.457  Sum_probs=192.8

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|++|+.+++..++++|+++++.+++.++.+++|||+++.....+.++++|||+|+|++|++++++|+..|+.+++++
T Consensus       139 ~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~  218 (367)
T cd08263         139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAV  218 (367)
T ss_pred             CCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999998777888999999999889999999999999999448888


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ce
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM  179 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  179 (254)
                      +.++++.++++++|++.++++++   .++...+.+..++.++|+++|++++...+..++++++++ |+++.+|.... ..
T Consensus       219 ~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~  294 (367)
T cd08263         219 DVRDEKLAKAKELGATHTVNAAK---EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGAT  294 (367)
T ss_pred             eCCHHHHHHHHHhCCceEecCCc---ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCc
Confidence            88999999999999999999887   778888888877778999999999865678999999999 99999987643 23


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      ..++...++.++.++.++...  ...+.++.++++++++.++..+.+++.++++++.++++.++++.. +|+||+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         295 AEIPITRLVRRGIKIIGSYGA--RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             cccCHHHHhhCCeEEEecCCC--CcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            445555665688888875322  113568889999999997765556788999999999999988876 588874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.97  E-value=1.9e-29  Score=212.06  Aligned_cols=226  Identities=29%  Similarity=0.421  Sum_probs=189.6

Q ss_pred             cCcceeeEEecCC--ceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE
Q 025336           21 CSTWSEYMVIDAN--YVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKII   98 (254)
Q Consensus        21 ~g~~a~~~~v~~~--~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~   98 (254)
                      .|+|++|++++++  .++++|++++++++++++.+++|||+++ ...+++++++|||+|+|++|++++++|+..|..+|+
T Consensus       135 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi  213 (386)
T cd08283         135 AGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVI  213 (386)
T ss_pred             CCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            4899999999987  8999999999999999999999999998 788999999999998899999999999999985699


Q ss_pred             EEcCCcccHHHHHhcCCceEeCCCCCCCc-hHHHHHHHhhCCCCccEEEEcCCCh---------------------hHHH
Q 025336           99 GIDKNPWKKEKGEAFGMTDFINPDDEPNK-SISELVKGITHGMGVDYCFECTGVP---------------------SLLS  156 (254)
Q Consensus        99 ~v~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~i~~~~~~~~~d~v~d~~g~~---------------------~~~~  156 (254)
                      +++.++++.+.+++++...++++.+   . ++.+.+.+++.++++|++|||+|+.                     ..+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~vi~~~~---~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (386)
T cd08283         214 AIDRVPERLEMARSHLGAETINFEE---VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALR  290 (386)
T ss_pred             EEcCCHHHHHHHHHcCCcEEEcCCc---chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHH
Confidence            9999999999999985446777765   5 4788888888777899999999752                     3678


Q ss_pred             HHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHH
Q 025336          157 EALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID  236 (254)
Q Consensus       157 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (254)
                      .++++++++ |+++.+|........++...++.+++++.+....   ..+.+.+++++++++++...+++++.+++++++
T Consensus       291 ~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~  366 (386)
T cd08283         291 EAIQAVRKG-GTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTH---VQRYLPRLLELIESGELDPSFIITHRLPLEDAP  366 (386)
T ss_pred             HHHHHhccC-CEEEEEcCCCCCcCccCHHHHHhCCcEEEeccCC---chHHHHHHHHHHHcCCCChhHceEEEecHHHHH
Confidence            899999999 9999998765422344554556689998887532   245688999999999977665677889999999


Q ss_pred             HHHHHHcCCC-e-eEEEEeC
Q 025336          237 KAIQLLKQPD-C-VKVLITI  254 (254)
Q Consensus       237 ~a~~~~~~~~-~-~k~vi~~  254 (254)
                      +||+.+.++. . +|++|++
T Consensus       367 ~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         367 EAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             HHHHHHHhCCCCeEEEEecC
Confidence            9999988776 3 6999864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.8e-29  Score=207.72  Aligned_cols=240  Identities=27%  Similarity=0.480  Sum_probs=201.2

Q ss_pred             CCCCcccccCCceeee---------------------------eeccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYH---------------------------IFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~---------------------------~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..|++ ||+|+.                           +...|+|++|+.++++ ++++|+++++++++++ .++
T Consensus        69 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~  145 (337)
T cd08261          69 GEGVAGLKV-GDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPL  145 (337)
T ss_pred             CCCCCCCCC-CCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chH
Confidence            566777899 999986                           2235899999999999 9999999999999877 677


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      +++++++ ....++++++|||+|+|.+|++++|+|+.+|+ +|+++.+++++.++++++|+++++++++   .++.+.+.
T Consensus       146 ~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l~  220 (337)
T cd08261         146 AIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD---EDVAARLR  220 (337)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc---cCHHHHHH
Confidence            8888887 78899999999999889999999999999999 8999989999999999999999999887   77888888


Q ss_pred             HhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHH
Q 025336          135 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDK  214 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~  214 (254)
                      +..++.++|+++||+|+...+..++++++++ |+++.+|.... ...++...+..+++++.+..   ....+.+++++++
T Consensus       221 ~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l  295 (337)
T cd08261         221 ELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKG-PVTFPDPEFHKKELTILGSR---NATREDFPDVIDL  295 (337)
T ss_pred             HHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCCC-CCccCHHHHHhCCCEEEEec---cCChhhHHHHHHH
Confidence            8877778999999998866789999999999 99999986643 33444455566788887763   2234578899999


Q ss_pred             HhCCCCCCCCceEEEeecccHHHHHHHHcCCC-e-eEEEEeC
Q 025336          215 CKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD-C-VKVLITI  254 (254)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vi~~  254 (254)
                      ++++.+++.+.+...+++++++++++.+.+++ . .|+|+++
T Consensus       296 ~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         296 LESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             HHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            99999765435677899999999999998873 4 6999874

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.97  E-value=2.5e-29  Score=208.54  Aligned_cols=243  Identities=27%  Similarity=0.374  Sum_probs=201.2

Q ss_pred             CCCCCcccccCCceeeeee-------------------------------ccCcceeeEEecCC--ceEEcCCCCCcccc
Q 025336            1 MLDGTSRMSVRGQKLYHIF-------------------------------SCSTWSEYMVIDAN--YVVRVDPSIDLSHA   47 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~-------------------------------~~g~~a~~~~v~~~--~v~~~p~~~~~~~a   47 (254)
                      +|+++..+++ ||+|++..                               ..|+|++|+++++.  .++++|++++++++
T Consensus        68 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a  146 (344)
T cd08284          68 VGPEVRTLKV-GDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAA  146 (344)
T ss_pred             eCCCccccCC-CCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHh
Confidence            3677788999 99998642                               14889999999965  99999999999999


Q ss_pred             ccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc
Q 025336           48 SFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        48 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      +.++.+++|||+++. ...+.++++|||+|+|++|++++|+|+.+|+.++++++.++++.+.++++|+. .++.+.   .
T Consensus       147 ~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~---~  221 (344)
T cd08284         147 LLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFED---A  221 (344)
T ss_pred             hhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecCC---c
Confidence            999999999999984 57889999999998899999999999999975788888888899999999975 466665   6


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCC
Q 025336          128 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSD  207 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  207 (254)
                      ++...+.++.++.++|+++||+++...+...+++++++ |+++.+|..............+.+++++.+..   ....+.
T Consensus       222 ~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  297 (344)
T cd08284         222 EPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTAEEFPFPGLDAYNKNLTLRFGR---CPVRSL  297 (344)
T ss_pred             CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCCCCccccHHHHhhcCcEEEEec---CCcchh
Confidence            67788888887778999999999766889999999999 99999997764233444455556888887542   223567


Q ss_pred             HHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEe
Q 025336          208 LPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  253 (254)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  253 (254)
                      ++++++++.++.+++.+++.+.+++++++++|+.+.+++.+|+|++
T Consensus       298 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~  343 (344)
T cd08284         298 FPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD  343 (344)
T ss_pred             HHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence            9999999999997765556778999999999998887655788886

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.97  E-value=1.2e-29  Score=208.51  Aligned_cols=244  Identities=21%  Similarity=0.271  Sum_probs=205.2

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      .|+++.++++ ||+|++....|+|++|+.++...++++|+++++.+++.++..+++||+++.....+.++++|||+|+ |
T Consensus        71 ~G~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~  149 (323)
T cd05282          71 VGSGVSGLLV-GQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANS  149 (323)
T ss_pred             eCCCCCCCCC-CCEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEccccc
Confidence            3677888999 9999987535899999999999999999999999999999999999999877788899999999987 8


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      .+|++++++|+.+|+ +++++..++++.+.++++|++.++++++   .++...+.+.+++.++|.++||+|+. .....+
T Consensus       150 ~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~~  224 (323)
T cd05282         150 AVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP---EDLAQRVKEATGGAGARLALDAVGGE-SATRLA  224 (323)
T ss_pred             HHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc---hhHHHHHHHHhcCCCceEEEECCCCH-HHHHHH
Confidence            999999999999999 8999989999999999999999998876   67888888888877999999999987 567889


Q ss_pred             HHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC-------CCCHHHHHHHHhCCCCCCCCceEEEeec
Q 025336          160 ETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPILLDKCKNKEFKLHQLLTHHVKL  232 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (254)
                      ++++++ |+++.+|........++...+..++.++.+.....+..       .+.+.++++++.++++.  +..++.+++
T Consensus       225 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~  301 (323)
T cd05282         225 RSLRPG-GTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLT--TPVGAKFPL  301 (323)
T ss_pred             HhhCCC-CEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcc--cCccceecH
Confidence            999999 99999987654323455555555899999887554321       13477788899999855  345678999


Q ss_pred             ccHHHHHHHHcCCCe-eEEEEe
Q 025336          233 EEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       233 ~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      ++++++|+.+.+++. .|++++
T Consensus       302 ~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         302 EDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             HHHHHHHHHHhcCCCCceEeeC
Confidence            999999999987766 488764

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.97  E-value=2.2e-29  Score=207.12  Aligned_cols=243  Identities=19%  Similarity=0.185  Sum_probs=202.6

Q ss_pred             CCCCcccccCCceeeeeec--cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-
Q 025336            2 LDGTSRMSVRGQKLYHIFS--CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-   78 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~--~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-   78 (254)
                      |+++..+++ ||+|++..+  .|+|++|+.+++..++++|+++++++++.++++++||| ++....+++++++|+|+|+ 
T Consensus        75 G~~v~~~~~-Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~  152 (324)
T cd08244          75 GPGVDPAWL-GRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAA  152 (324)
T ss_pred             CCCCCCCCC-CCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCC
Confidence            566677888 999998752  58999999999999999999999999999999999995 4557788999999999985 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      |++|++++++|+.+|+ +|+++++++++.+.++++|++.++++++   .++.+.+.+..+++++|+++||+|+. ....+
T Consensus       153 ~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~  227 (324)
T cd08244         153 GGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAVDYTR---PDWPDQVREALGGGGVTVVLDGVGGA-IGRAA  227 (324)
T ss_pred             chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHcCCCCceEEEECCChH-hHHHH
Confidence            9999999999999999 8999999999999999999988888876   77888888877777899999999987 56899


Q ss_pred             HHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEeecccH
Q 025336          159 LETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHVKLEEI  235 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                      +++++++ |+++.+|.......++++..++.+++++.+........   .+.+.++++++.++++.  +.+++.++++++
T Consensus       228 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~  304 (324)
T cd08244         228 LALLAPG-GRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLV--PVVGQTFPLERA  304 (324)
T ss_pred             HHHhccC-cEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCcc--CccceEEeHHHH
Confidence            9999999 99999987654223555445556899998876543211   23466788889999854  446678999999


Q ss_pred             HHHHHHHcCCCe-eEEEEeC
Q 025336          236 DKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       236 ~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++||+.+.++.. +|+++++
T Consensus       305 ~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         305 AEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             HHHHHHHHcCCCCceEEEeC
Confidence            999999988766 5998864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.8e-29  Score=208.32  Aligned_cols=243  Identities=23%  Similarity=0.355  Sum_probs=204.2

Q ss_pred             CCCCcccccCCceeee---------------------------eeccCcceeeEEecCC--ceEEcCCCCCccccccccc
Q 025336            2 LDGTSRMSVRGQKLYH---------------------------IFSCSTWSEYMVIDAN--YVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~---------------------------~~~~g~~a~~~~v~~~--~v~~~p~~~~~~~aa~~~~   52 (254)
                      |+++..|++ ||+|++                           +.+.|+|++|+.+++.  .++++|+++++++++.++.
T Consensus        70 G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~  148 (345)
T cd08260          70 GEDVSRWRV-GDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGC  148 (345)
T ss_pred             CCCCccCCC-CCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhcc
Confidence            567778899 999975                           3335899999999985  8999999999999999999


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      +++|||+++....++.++++|+|+|+|++|++++|+|+..|+ +|+++++++++.+.++++|++.+++++.  ..++...
T Consensus       149 ~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~  225 (345)
T cd08260         149 RFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE--VEDVAAA  225 (345)
T ss_pred             chHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc--chhHHHH
Confidence            999999998778889999999999999999999999999999 8999999999999999999999988763  1356677


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ce-eeccHHHHHhCCCEEEeeecCCCCCCCCHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM-VPLNVIALACGGRTLKGTTFGGIKTKSDLPI  210 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  210 (254)
                      +.++..+ ++|.+|||+|+...+...+++++++ |+++.+|.... .. ..+++..+..+++++.+....   ..+.++.
T Consensus       226 ~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  300 (345)
T cd08260         226 VRDLTGG-GAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM---PAHRYDA  300 (345)
T ss_pred             HHHHhCC-CCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC---CHHHHHH
Confidence            7777777 8999999999755788999999999 99999997654 21 455665665688999887532   2467889


Q ss_pred             HHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          211 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      ++++++++++...+.+.+.+++++++++|+.+.++.. +|+|++
T Consensus       301 ~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         301 MLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             HHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence            9999999997765556778999999999999988766 588875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK10083 putative oxidoreductase; Provisional

Probab=99.97  E-value=2.9e-29  Score=207.74  Aligned_cols=239  Identities=18%  Similarity=0.284  Sum_probs=193.4

Q ss_pred             CCCCcccccCCceee---------------------------eeeccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLY---------------------------HIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~---------------------------~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..+++ ||+|+                           ++...|+|+||++++...++++|+++++++++ +..++
T Consensus        69 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~  146 (339)
T PRK10083         69 GEGVDAARI-GERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPF  146 (339)
T ss_pred             CCCCccCCC-CCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchH
Confidence            667778899 99997                           33335899999999999999999999998876 45778


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARM-QGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~-~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      .+++.+ ....++++|++|+|+|+|++|++++|+++. +|+..++++++++++.+.++++|++.++++++   .++.+.+
T Consensus       147 ~~a~~~-~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~~~  222 (339)
T PRK10083        147 TIAANV-TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ---EPLGEAL  222 (339)
T ss_pred             HHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc---ccHHHHH
Confidence            888864 477899999999999999999999999996 69966888888999999999999999998876   6666666


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      ..  .+.++|++||++|++..+..++++++++ |+++.+|.... ...++...+..+++++.+...    ..+.++++++
T Consensus       223 ~~--~g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  294 (339)
T PRK10083        223 EE--KGIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSE-PSEIVQQGITGKELSIFSSRL----NANKFPVVID  294 (339)
T ss_pred             hc--CCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CceecHHHHhhcceEEEEEec----ChhhHHHHHH
Confidence            43  2335789999999766789999999999 99999997654 233344455557888877653    2467899999


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCC-e-eEEEEeC
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD-C-VKVLITI  254 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vi~~  254 (254)
                      +++++++++.+++++.|+++++++|++.+.++. . +|+++++
T Consensus       295 ~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~  337 (339)
T PRK10083        295 WLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTF  337 (339)
T ss_pred             HHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEec
Confidence            999999776555778999999999999987543 3 6999863

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=2.2e-29  Score=209.07  Aligned_cols=244  Identities=30%  Similarity=0.398  Sum_probs=199.4

Q ss_pred             CCCCcccccCCceeeee------------------------------eccCcceeeEEecCC--ceEEcCCCCCcccccc
Q 025336            2 LDGTSRMSVRGQKLYHI------------------------------FSCSTWSEYMVIDAN--YVVRVDPSIDLSHASF   49 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~------------------------------~~~g~~a~~~~v~~~--~v~~~p~~~~~~~aa~   49 (254)
                      |+++..|++ ||+|+..                              ...|+|++|++++++  .++++|+++++++++.
T Consensus        70 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~  148 (347)
T cd05278          70 GSDVKRLKP-GDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALM  148 (347)
T ss_pred             CCCccccCC-CCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhh
Confidence            677788999 9999851                              224899999999987  8999999999999999


Q ss_pred             ccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchH
Q 025336           50 LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSI  129 (254)
Q Consensus        50 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  129 (254)
                      ++.+++|||+++ ...+++++++|||.|+|++|++++|+|+.+|..+++++++++++.+.++++|++.++++++   .++
T Consensus       149 l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~~~  224 (347)
T cd05278         149 LSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN---GDI  224 (347)
T ss_pred             hcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc---chH
Confidence            999999999998 6788999999999888999999999999999647888888888899999999999998887   778


Q ss_pred             HHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHH
Q 025336          130 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLP  209 (254)
Q Consensus       130 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~  209 (254)
                      .+.+++.+++.++|+++|++++...+...+++++++ |+++.+|..............+.+++++.+....   ..+.++
T Consensus       225 ~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  300 (347)
T cd05278         225 VEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVP---VRARMP  300 (347)
T ss_pred             HHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCcccCccchhhhceeEEEeeccC---chhHHH
Confidence            888888777678999999999855789999999999 9999998654411111111223477777775432   245788


Q ss_pred             HHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe--eEEEEeC
Q 025336          210 ILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC--VKVLITI  254 (254)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~k~vi~~  254 (254)
                      +++++++++.+++.+.+...+++++++++++.+..+..  .|+++++
T Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         301 ELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             HHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            99999999997755445678999999999999877665  4888864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.97  E-value=5e-29  Score=206.67  Aligned_cols=242  Identities=24%  Similarity=0.394  Sum_probs=201.8

Q ss_pred             CCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCc-----eEEcCCCCCcccccc
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANY-----VVRVDPSIDLSHASF   49 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~-----v~~~p~~~~~~~aa~   49 (254)
                      |+++..|++ ||+|+++.                           ..|+|++|+.++++.     ++++|+++++.+++.
T Consensus        69 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~  147 (343)
T cd08235          69 GDGVTGFKV-GDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAAL  147 (343)
T ss_pred             CCCCCCCCC-CCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHh
Confidence            567778999 99998751                           248999999999988     999999999999887


Q ss_pred             ccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchH
Q 025336           50 LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSI  129 (254)
Q Consensus        50 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  129 (254)
                      + .++.+|++++. ...++++++|||+|+|.+|++++|+|+..|.+.++++++++++.+.++++|.++++++++   .++
T Consensus       148 ~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~---~~~  222 (343)
T cd08235         148 V-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE---EDL  222 (343)
T ss_pred             h-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCc---cCH
Confidence            6 78899999984 558999999999988999999999999999933888889999999999999999999887   788


Q ss_pred             HHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCCCCCCH
Q 025336          130 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIKTKSDL  208 (254)
Q Consensus       130 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  208 (254)
                      .+.+.+..+++++|+++||+++...+...+++++++ |+++.+|.... ....+++..+..+++.+.+....   ..+.+
T Consensus       223 ~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~  298 (343)
T cd08235         223 VEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYAA---SPEDY  298 (343)
T ss_pred             HHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEecC---ChhhH
Confidence            888888887778999999999766788999999999 99999986544 23445555666688888776533   24568


Q ss_pred             HHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEe
Q 025336          209 PILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  253 (254)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  253 (254)
                      +.++++++++.+.+.+.+...+++++++++++.+.+++..|+|++
T Consensus       299 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  343 (343)
T cd08235         299 KEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLKIVIT  343 (343)
T ss_pred             HHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCCcEEEEeC
Confidence            889999999997654456678999999999999988774488874

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.97  E-value=3.5e-29  Score=207.56  Aligned_cols=240  Identities=24%  Similarity=0.395  Sum_probs=198.9

Q ss_pred             CCCCcccccCCceeee------------------------ee----ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYH------------------------IF----SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~------------------------~~----~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |.++.+|++ ||+|+.                        +.    ..|+|++|++++++.++++|+++++++++.+ .+
T Consensus        70 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~  147 (343)
T cd05285          70 GSGVTHLKV-GDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EP  147 (343)
T ss_pred             CCCCCCCCC-CCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hH
Confidence            566778899 999975                        21    1489999999999999999999999999877 67


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchH---H
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSI---S  130 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---~  130 (254)
                      +.+|++++ ....++++++|||+|+|++|++++|+|+.+|...|+++++++++.++++++|++.++++++   .++   .
T Consensus       148 ~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~~  223 (343)
T cd05285         148 LSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT---EDTPESA  223 (343)
T ss_pred             HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc---ccchhHH
Confidence            88999987 7899999999999988999999999999999944899988999999999999999998876   553   6


Q ss_pred             HHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHH
Q 025336          131 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPI  210 (254)
Q Consensus       131 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  210 (254)
                      +.+.+.+++.++|+++||+|+...+...+++++++ |+++.+|.... ...+++..+..+++.+.+....    .+.+++
T Consensus       224 ~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  297 (343)
T cd05285         224 EKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKP-EVTLPLSAASLREIDIRGVFRY----ANTYPT  297 (343)
T ss_pred             HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CCccCHHHHhhCCcEEEEeccC----hHHHHH
Confidence            77777777778999999999865789999999999 99999986543 2344555566688888876532    256888


Q ss_pred             HHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCC-e-eEEEEe
Q 025336          211 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD-C-VKVLIT  253 (254)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vi~  253 (254)
                      ++++++++.+.+.+.+.+.|+++++.++++.+.++. . +|++|.
T Consensus       298 ~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~  342 (343)
T cd05285         298 AIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVIE  342 (343)
T ss_pred             HHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEEe
Confidence            999999998765555677899999999999998774 3 799874

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.97  E-value=3.3e-29  Score=208.25  Aligned_cols=242  Identities=21%  Similarity=0.285  Sum_probs=201.0

Q ss_pred             CCCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++..+++ ||+|+++.                           ..|+|++|+.++...++++|+++++.+++.+++.
T Consensus        81 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~  159 (350)
T cd08240          81 VGPDAADVKV-GDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACS  159 (350)
T ss_pred             eCCCCCCCCC-CCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhch
Confidence            3667777889 99998651                           3489999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      ++|||+++.....++++++|||+|+|++|++++|+|+..|+++|++++.++++.+.++++|++.++++++   .++.+.+
T Consensus       160 ~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~  236 (350)
T cd08240         160 GLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSD---PDAAKRI  236 (350)
T ss_pred             hhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCC---ccHHHHH
Confidence            9999999876666678999999988999999999999999977888888999999999999988888876   6777778


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      .+..++ ++|+++|++|.+..+..++++++++ |+++.+|.... ....+...+.+++.++.+.....   .+++.++++
T Consensus       237 ~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~  310 (350)
T cd08240         237 IKAAGG-GVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGG-EATLPLPLLPLRALTIQGSYVGS---LEELRELVA  310 (350)
T ss_pred             HHHhCC-CCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCC-CCcccHHHHhhcCcEEEEcccCC---HHHHHHHHH
Confidence            777776 8999999999766889999999999 99999987654 12223333445888888876432   356888999


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++.++.  .....+++++++++|+.+.+++. +|+++++
T Consensus       311 ll~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  350 (350)
T cd08240         311 LAKAGKLKP--IPLTERPLSDVNDALDDLKAGKVVGRAVLKP  350 (350)
T ss_pred             HHHcCCCcc--ceeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence            999998653  35568999999999999987766 5988863

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.97  E-value=2.2e-29  Score=207.87  Aligned_cols=244  Identities=24%  Similarity=0.282  Sum_probs=201.8

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      +|.++..+++ ||+|+++..+|+|++|++++...++++|+++++++++.++.++.+||+++.....++++++|+|+|+ |
T Consensus        73 vG~~v~~~~~-Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g  151 (334)
T PTZ00354         73 VGSDVKRFKE-GDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGAS  151 (334)
T ss_pred             eCCCCCCCCC-CCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            3667778899 9999988656999999999999999999999999999999999999999877788999999999986 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCch-HHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS-ISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      ++|++++++++.+|+ +++++.+++++.++++++|+++++++..   .+ +...+.+.++++++|+++||+++. .+..+
T Consensus       152 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~  226 (334)
T PTZ00354        152 GVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIRYPD---EEGFAPKVKKLTGEKGVNLVLDCVGGS-YLSET  226 (334)
T ss_pred             hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC---hhHHHHHHHHHhCCCCceEEEECCchH-HHHHH
Confidence            999999999999999 7777889999999999999988888765   44 777788887777999999999875 78999


Q ss_pred             HHHcccCCcEEEEEccCCCceee-ccHHHHHhCCCEEEeeecCCCCC-------CCCHHHHHHHHhCCCCCCCCceEEEe
Q 025336          159 LETTKVGKGKVIVIGVGVDTMVP-LNVIALACGGRTLKGTTFGGIKT-------KSDLPILLDKCKNKEFKLHQLLTHHV  230 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~i~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                      +++++++ |+++.+|...+.... ++...+..++.++.++.......       ...++.+++++.++.++  +.+.+.+
T Consensus       227 ~~~l~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~  303 (334)
T PTZ00354        227 AEVLAVD-GKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIK--PIVDRTY  303 (334)
T ss_pred             HHHhccC-CeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCcc--CccccEE
Confidence            9999999 999999865442222 56666666777888876543211       02246678888888854  4466789


Q ss_pred             ecccHHHHHHHHcCCCe-eEEEEe
Q 025336          231 KLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       231 ~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      ++++++++++.+.++.. +|++++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~kvvv~  327 (334)
T PTZ00354        304 PLEEVAEAHTFLEQNKNIGKVVLT  327 (334)
T ss_pred             cHHHHHHHHHHHHhCCCCceEEEe
Confidence            99999999999987765 588875

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=4.1e-29  Score=207.00  Aligned_cols=241  Identities=23%  Similarity=0.397  Sum_probs=193.1

Q ss_pred             CCCCcc-cccCCceeeeee-----------------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHH
Q 025336            2 LDGTSR-MSVRGQKLYHIF-----------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWK   63 (254)
Q Consensus         2 g~~~~~-~~~~Gd~v~~~~-----------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~   63 (254)
                      |+++.. |++ ||+|+++.                 ..|+|+||+++|++.++++|+++++++++ ++.++++||+++ .
T Consensus        79 G~~v~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~-~  155 (341)
T cd08262          79 GPGTERKLKV-GTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV-R  155 (341)
T ss_pred             CCCCcCCCCC-CCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-H
Confidence            556665 899 99998762                 35899999999999999999999999887 567889999985 7


Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHH---HHHHhhCCC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISE---LVKGITHGM  140 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~i~~~~~~~  140 (254)
                      ..+++++++|||+|+|++|.+++|+++.+|+..++++++++++.+.++++|+++++++++   .+...   .+.+...+.
T Consensus       156 ~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~~  232 (341)
T cd08262         156 RARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAA---DSPFAAWAAELARAGGP  232 (341)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCC---cCHHHHHHHHHHHhCCC
Confidence            889999999999988999999999999999955788888899999999999988998775   32221   344455556


Q ss_pred             CccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCC
Q 025336          141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEF  220 (254)
Q Consensus       141 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  220 (254)
                      ++|+++|++|++..+..++++++++ |+++.+|.... .....+.....+++++.+....   ..+.+++++++++++.+
T Consensus       233 ~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g~i  307 (341)
T cd08262         233 KPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCME-SDNIEPALAIRKELTLQFSLGY---TPEEFADALDALAEGKV  307 (341)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCC-CCccCHHHHhhcceEEEEEecc---cHHHHHHHHHHHHcCCC
Confidence            8999999999854678899999999 99999987643 1112222323477787765422   23568899999999998


Q ss_pred             CCCCceEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          221 KLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       221 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      .+.+.+.+.+++++++++++.+.+++. +|+|++
T Consensus       308 ~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         308 DVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             ChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            766666789999999999999988776 598874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=5.6e-29  Score=206.88  Aligned_cols=239  Identities=24%  Similarity=0.384  Sum_probs=197.9

Q ss_pred             CCCCc--ccccCCceeee---------------------------ee--ccCcceeeEEecCC-ceEEcCCCCCcccccc
Q 025336            2 LDGTS--RMSVRGQKLYH---------------------------IF--SCSTWSEYMVIDAN-YVVRVDPSIDLSHASF   49 (254)
Q Consensus         2 g~~~~--~~~~~Gd~v~~---------------------------~~--~~g~~a~~~~v~~~-~v~~~p~~~~~~~aa~   49 (254)
                      |.++.  +|++ ||+|+.                           +.  ..|+|++|+.+|++ .++++|+++++++++.
T Consensus        78 G~~v~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~  156 (350)
T cd08256          78 GEGAEERGVKV-GDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAIL  156 (350)
T ss_pred             CCCcccCCCCC-CCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhh
Confidence            55666  7888 999985                           21  34899999999987 5789999999999998


Q ss_pred             ccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchH
Q 025336           50 LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSI  129 (254)
Q Consensus        50 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  129 (254)
                      + .+++|+|.++ ...+++++++|+|.|+|++|++++++|+.+|+..++++++++++.+.++++|++.++++++   .++
T Consensus       157 ~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~  231 (350)
T cd08256         157 I-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPE---VDV  231 (350)
T ss_pred             h-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCC---cCH
Confidence            8 8999999998 7889999999999778999999999999999866888888999999999999999998876   778


Q ss_pred             HHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHH-HhCCCEEEeeecCCCCCCCCH
Q 025336          130 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIAL-ACGGRTLKGTTFGGIKTKSDL  208 (254)
Q Consensus       130 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~  208 (254)
                      .+.+.+.+++.++|+++|++|+...+..++++++++ |+++.+|.... ...++...+ ..+++++.++...    ...+
T Consensus       232 ~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~~~~~~----~~~~  305 (350)
T cd08256         232 VEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGD-PVTVDWSIIGDRKELDVLGSHLG----PYCY  305 (350)
T ss_pred             HHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCC-CCccChhHhhcccccEEEEeccC----chhH
Confidence            888888888778999999999755788999999999 99999986543 223333332 2467788877643    2468


Q ss_pred             HHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEE
Q 025336          209 PILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi  252 (254)
                      .+++++++++.++..+.+.+.|+++++++||+.+.+++. +|+++
T Consensus       306 ~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         306 PIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             HHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            889999999997765556788999999999999988765 58774

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.97  E-value=4.6e-29  Score=210.55  Aligned_cols=244  Identities=19%  Similarity=0.231  Sum_probs=199.1

Q ss_pred             CCCCcccccCCceeeeee----------------------------ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |+++..+++ ||+|+...                            ..|+|+||+++++..++++|+++++++++.++.+
T Consensus        93 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~  171 (398)
T TIGR01751        93 GPGVTRWKV-GDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLT  171 (398)
T ss_pred             CCCCCCCCC-CCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHhhccch
Confidence            667778889 99997642                            2489999999999999999999999999999999


Q ss_pred             hhhhhHHHHH--hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCC-----
Q 025336           54 FTTGFGAAWK--EAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEP-----  125 (254)
Q Consensus        54 ~~ta~~~l~~--~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~-----  125 (254)
                      +.|||+++..  ..+++++++|+|+|+ |++|++++|+++.+|+ +++++++++++.+.++++|++.++++++.+     
T Consensus       172 ~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~  250 (398)
T TIGR01751       172 GATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRL  250 (398)
T ss_pred             HHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhcc
Confidence            9999999754  467889999999997 9999999999999999 788888889999999999999999875410     


Q ss_pred             --------------CchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCC
Q 025336          126 --------------NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGG  191 (254)
Q Consensus       126 --------------~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  191 (254)
                                    ...+...+.++++++++|++|||+|.. .+..++++++++ |+++.+|........++...+..++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~  328 (398)
T TIGR01751       251 PDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRA-TFPTSVFVCRRG-GMVVICGGTTGYNHDYDNRYLWMRQ  328 (398)
T ss_pred             ccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHH-HHHHHHHhhccC-CEEEEEccccCCCCCcCHHHHhhcc
Confidence                          012445667777777899999999975 789999999999 9999999865433445555566678


Q ss_pred             CEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          192 RTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       192 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      .++.++....   ..++++++++++++++.  +.+++++++++++++|+.+.++.. +|+|+.+
T Consensus       329 ~~~~~~~~~~---~~~~~~~~~~l~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  387 (398)
T TIGR01751       329 KRIQGSHFAN---LREAWEANRLVAKGRID--PTLSKVYPLEEIGQAHQDVHRNHHQGNVAVLV  387 (398)
T ss_pred             cEEEccccCc---HHHHHHHHHHHHCCCcc--cceeeEEcHHHHHHHHHHHHcCCCCceEEEEe
Confidence            8888776432   34478899999999855  446788999999999999987776 5888763

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=8.4e-29  Score=208.05  Aligned_cols=245  Identities=20%  Similarity=0.337  Sum_probs=197.0

Q ss_pred             CCCCcccccCCceeee---------------------------eeccCcceeeEEecCCceEEcCCCC-------Ccccc
Q 025336            2 LDGTSRMSVRGQKLYH---------------------------IFSCSTWSEYMVIDANYVVRVDPSI-------DLSHA   47 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~---------------------------~~~~g~~a~~~~v~~~~v~~~p~~~-------~~~~a   47 (254)
                      |+++..|++ ||+|+.                           +...|+|++|+.+++..++++|+.+       +++ +
T Consensus       103 G~~v~~~~~-Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~  180 (384)
T cd08265         103 GKNVKNFEK-GDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-A  180 (384)
T ss_pred             CCCCCCCCC-CCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-H
Confidence            666777889 999974                           3235899999999999999999863       344 5


Q ss_pred             ccccchhhhhhHHHHHh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC
Q 025336           48 SFLSCGFTTGFGAAWKE-AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        48 a~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                      ++++.++++||+++... .++++|++|||+|+|++|++++|+|+.+|+.+|++++.++++.+.++++|+++++++++.+.
T Consensus       181 a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~  260 (384)
T cd08265         181 GALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRD  260 (384)
T ss_pred             hhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEccccccc
Confidence            56668899999998666 68999999999988999999999999999867999988888999999999999988774111


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCCh-hHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTK  205 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~  205 (254)
                      .++...+.++++++++|+++|+.|++ ..+..++++++++ |+++.+|.... ..+++...+..+..++.+.....  ..
T Consensus       261 ~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~--~~  336 (384)
T cd08265         261 CLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAAT-TVPLHLEVLQVRRAQIVGAQGHS--GH  336 (384)
T ss_pred             ccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCC-CCcccHHHHhhCceEEEEeeccC--Cc
Confidence            36788888888888999999999963 3678999999999 99999986544 23344455555777888775321  23


Q ss_pred             CCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEE
Q 025336          206 SDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI  252 (254)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  252 (254)
                      ..+.+++++++++.++...++++.|+++++++||+.+.++...|+|+
T Consensus       337 ~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv  383 (384)
T cd08265         337 GIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI  383 (384)
T ss_pred             chHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence            46899999999999776555778899999999999987765568875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=1.2e-28  Score=204.24  Aligned_cols=240  Identities=25%  Similarity=0.383  Sum_probs=203.1

Q ss_pred             CCCCcccccCCceeeeee----------------------------ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |+++..+++ ||+|+...                            ..|+|++|+.++++.++++|+++++++++.++..
T Consensus        72 G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~  150 (341)
T cd08297          72 GPGVSGLKV-GDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCA  150 (341)
T ss_pred             CCCCCCCCC-CCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcc
Confidence            566777889 99997531                            2489999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      +.|||+++.. .+++++++|||+|+ +.+|++++++++.+|+ +|+++..++++.+.++++|++.++++++   .++...
T Consensus       151 ~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~  225 (341)
T cd08297         151 GVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDFKK---SDDVEA  225 (341)
T ss_pred             hHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEcCCC---ccHHHH
Confidence            9999999854 58999999999987 6799999999999999 8999999999999999999999999887   678888


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      +.+..+++++|+++|+.+....+..++++++++ |+++.+|.......+++...++.+++++.+....   ..+.++.++
T Consensus       226 ~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  301 (341)
T cd08297         226 VKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVG---TRQDLQEAL  301 (341)
T ss_pred             HHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCCCCCCCCCHHHHHhcccEEEEeccC---CHHHHHHHH
Confidence            888887779999999887666889999999999 9999998765433456666666789999886532   246788999


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++++++  +.+ ..|++++++++|+.+.++.. +|+++++
T Consensus       302 ~~~~~~~l~--~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         302 EFAARGKVK--PHI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             HHHHcCCCc--cee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            999999864  334 57999999999999988776 5999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=6.4e-29  Score=206.54  Aligned_cols=237  Identities=23%  Similarity=0.340  Sum_probs=194.9

Q ss_pred             CCCCcccccCCceeeee----------------ec---cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHH
Q 025336            2 LDGTSRMSVRGQKLYHI----------------FS---CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW   62 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~----------------~~---~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~   62 (254)
                      |+++.+|++ ||+|+..                .+   +|+|++|+.+|+..++++|+++++++++.+++++.|||+++ 
T Consensus        93 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-  170 (350)
T cd08274          93 GEGVDTARI-GERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-  170 (350)
T ss_pred             CCCCCCCCC-CCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-
Confidence            667778999 9999863                11   38999999999999999999999999999999999999987 


Q ss_pred             HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           63 KEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ...+++++++|||+|+ |++|++++++++.+|+ ++++++.+. +.+.++++|++.+++...   ....+  .+.+.+++
T Consensus       171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~--~~~~~~~~  243 (350)
T cd08274         171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAA-KEEAVRALGADTVILRDA---PLLAD--AKALGGEP  243 (350)
T ss_pred             hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCch-hhHHHHhcCCeEEEeCCC---ccHHH--HHhhCCCC
Confidence            7788999999999997 9999999999999999 788886654 888889999876665443   33333  45556668


Q ss_pred             ccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCC
Q 025336          142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFK  221 (254)
Q Consensus       142 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~  221 (254)
                      +|++||++|+. .+..++++++++ |+++.+|.......+++...++.++.++.++...   ....+.++++++.+++++
T Consensus       244 ~d~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~l~  318 (350)
T cd08274         244 VDVVADVVGGP-LFPDLLRLLRPG-GRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLG---TREVFRRLVRYIEEGEIR  318 (350)
T ss_pred             CcEEEecCCHH-HHHHHHHHhccC-CEEEEecccCCccccCCHHHhhhcceEEEEeecC---CHHHHHHHHHHHHCCCcc
Confidence            99999999986 789999999999 9999998654322566667766789999988743   245688899999999854


Q ss_pred             CCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          222 LHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       222 ~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                        +.+.+.+++++++++|+.+.++.. .|+|+++
T Consensus       319 --~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         319 --PVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             --cccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence              446678999999999999987665 5998864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=2.1e-28  Score=203.12  Aligned_cols=244  Identities=26%  Similarity=0.351  Sum_probs=198.9

Q ss_pred             CCCCCcccccCCceeee-ee--------------------------ccCcceeeEEecCC--ceEEcCCCCCccccc---
Q 025336            1 MLDGTSRMSVRGQKLYH-IF--------------------------SCSTWSEYMVIDAN--YVVRVDPSIDLSHAS---   48 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~-~~--------------------------~~g~~a~~~~v~~~--~v~~~p~~~~~~~aa---   48 (254)
                      +|+++..+++ ||+|+. +.                          .+|+|++|+.+|.+  .++++|++++++.+.   
T Consensus        68 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~  146 (345)
T cd08287          68 VGSEVTSVKP-GDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPS  146 (345)
T ss_pred             eCCCCCccCC-CCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhh
Confidence            3667778899 999975 21                          12889999999975  899999999873221   


Q ss_pred             --cccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC
Q 025336           49 --FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        49 --~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                        .+...+.+|++++ ....++++++|+|.|+|++|++++|+|+..|+..++++++++++.+.++++|++.++++++   
T Consensus       147 ~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~---  222 (345)
T cd08287         147 LLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERG---  222 (345)
T ss_pred             hHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCc---
Confidence              1225688899987 4778999999999988999999999999999955888888888899999999999999987   


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKS  206 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  206 (254)
                      .++.+.+.+..++.++|+++||+|++..+..++++++++ |+++.+|.... ...++....+.+++++.+....   ...
T Consensus       223 ~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~  297 (345)
T cd08287         223 EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHG-GVELDVRELFFRNVGLAGGPAP---VRR  297 (345)
T ss_pred             ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccCC-CCccCHHHHHhcceEEEEecCC---cHH
Confidence            778888888887778999999999876889999999999 99999987653 3445553445689999875422   245


Q ss_pred             CHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          207 DLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++++++++.++.+++.+++++.+++++++++++.+.++...|++|++
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~~  345 (345)
T cd08287         298 YLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLRP  345 (345)
T ss_pred             HHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeCC
Confidence            789999999999977655567889999999999999887767999864

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.97  E-value=4.7e-29  Score=206.64  Aligned_cols=243  Identities=20%  Similarity=0.247  Sum_probs=199.1

Q ss_pred             CCCCcccccCCceeeeee-ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            2 LDGTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      |+++..|++ ||+|++.. +.|+|++|+.++...++++|+++++++++.++++++|||+++.....++++++|||+|+ |
T Consensus        79 G~~v~~~~~-Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g  157 (341)
T cd08290          79 GSGVKSLKP-GDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANS  157 (341)
T ss_pred             CCCCCCCCC-CCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchh
Confidence            566777999 99999764 35899999999999999999999999999999999999999877788999999999986 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCc----ccHHHHHhcCCceEeCCCCCCCc---hHHHHHHHhhCCCCccEEEEcCCCh
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNP----WKKEKGEAFGMTDFINPDDEPNK---SISELVKGITHGMGVDYCFECTGVP  152 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~----~~~~~~~~~g~~~v~~~~~~~~~---~~~~~i~~~~~~~~~d~v~d~~g~~  152 (254)
                      ++|++++|+|+..|+ +++++..++    ++.++++++|++++++++.   .   ++...+....++ ++|+++||+|+.
T Consensus       158 ~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~~-~~d~vld~~g~~  232 (341)
T cd08290         158 AVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLKALGADHVLTEEE---LRSLLATELLKSAPGG-RPKLALNCVGGK  232 (341)
T ss_pred             HHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHHhcCCCEEEeCcc---cccccHHHHHHHHcCC-CceEEEECcCcH
Confidence            999999999999999 788876665    5688888899999998775   4   677778877777 899999999987


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC-------CCCHHHHHHHHhCCCCCCCCc
Q 025336          153 SLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPILLDKCKNKEFKLHQL  225 (254)
Q Consensus       153 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  225 (254)
                       .+...+++++++ |+++.+|........++...++.+++++.+.....+..       ...+..+++++.++.+...  
T Consensus       233 -~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--  308 (341)
T cd08290         233 -SATELARLLSPG-GTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--  308 (341)
T ss_pred             -hHHHHHHHhCCC-CEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--
Confidence             677899999999 99999986543233455545566899999887543211       1247788899999986543  


Q ss_pred             eEEEe---ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          226 LTHHV---KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       226 ~~~~~---~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ....+   ++++++++++.+.++.. .|+|+++
T Consensus       309 ~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         309 PVEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             cccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            34456   99999999999987766 5999875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.97  E-value=1.9e-28  Score=202.73  Aligned_cols=239  Identities=26%  Similarity=0.409  Sum_probs=200.8

Q ss_pred             CCCCcccccCCceeee------------------e---------eccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYH------------------I---------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~------------------~---------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..+++ ||+|+.                  +         ...|+|++|+.++...++++|+++++++++.++.++
T Consensus        72 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~  150 (338)
T cd08254          72 GAGVTNFKV-GDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAV  150 (338)
T ss_pred             CCCCccCCC-CCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchH
Confidence            667777889 999975                  1         114899999999999999999999999999999999


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      .|||+++.....++++++|||.|+|++|++++++|+..|+ +|++++.++++.+.++++|.+.++++.+   ......+ 
T Consensus       151 ~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~---~~~~~~~-  225 (338)
T cd08254         151 LTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD---DSPKDKK-  225 (338)
T ss_pred             HHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCC---cCHHHHH-
Confidence            9999998778889999999998889999999999999999 8999999999999999999988888776   5565656 


Q ss_pred             HhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHH
Q 025336          135 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDK  214 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~  214 (254)
                      +...+.++|+++||+|....+..++++++++ |+++.+|.... ...++...+..++.++.+++..   ....+..++++
T Consensus       226 ~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l  300 (338)
T cd08254         226 AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRD-KLTVDLSDLIARELRIIGSFGG---TPEDLPEVLDL  300 (338)
T ss_pred             HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCCC-CCccCHHHHhhCccEEEEeccC---CHHHHHHHHHH
Confidence            5556668999999998776889999999999 99999987544 3345555667788888886532   34678889999


Q ss_pred             HhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          215 CKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++.++..   .+.+++++++++++.+.+++. +|+|+++
T Consensus       301 l~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         301 IAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             HHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            999996643   468999999999999988776 5999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.97  E-value=2.3e-28  Score=202.75  Aligned_cols=243  Identities=25%  Similarity=0.390  Sum_probs=198.0

Q ss_pred             CCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..|++ ||+|+++.                           ..|+|++|+++|++.++++|+++++++++++ .++
T Consensus        68 g~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~  145 (343)
T cd08236          68 GSGVDDLAV-GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPA  145 (343)
T ss_pred             CCCCCcCCC-CCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chH
Confidence            566778999 99998751                           3489999999999999999999999999887 678


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      ++||+++. ...++++++|||+|+|.+|++++|+|+.+|+..|+++++++++.++++++|++.++++++   .. ...+.
T Consensus       146 ~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~---~~-~~~~~  220 (343)
T cd08236         146 AVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE---ED-VEKVR  220 (343)
T ss_pred             HHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc---cc-HHHHH
Confidence            89999984 788999999999988999999999999999943999988889999999999999998886   55 67777


Q ss_pred             HhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCc-e-eeccHHHHHhCCCEEEeeecCCCC--CCCCHHH
Q 025336          135 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDT-M-VPLNVIALACGGRTLKGTTFGGIK--TKSDLPI  210 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-~-~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~  210 (254)
                      +..+++++|+++||+|....+..++++++++ |+++.+|..... . ...++..++.++.++.++......  ..+.+++
T Consensus       221 ~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (343)
T cd08236         221 ELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRT  299 (343)
T ss_pred             HHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHH
Confidence            7777778999999998766789999999999 999999865431 1 122334455688999888753221  1456888


Q ss_pred             HHHHHhCCCCCCCCceEEEeecccHHHHHHHHcC-CCe-eEEEE
Q 025336          211 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ-PDC-VKVLI  252 (254)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~-~k~vi  252 (254)
                      ++++++++.+.+.+.+...+++++++++++.+.+ +.. .|+|+
T Consensus       300 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         300 ALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             HHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            9999999997644556678999999999999987 444 47764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.7e-28  Score=199.60  Aligned_cols=242  Identities=23%  Similarity=0.320  Sum_probs=197.5

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTV   81 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~   81 (254)
                      |+++..+++ ||+|+.+. .|+|++|+.++++.++++|+++  ..++....+++++++++. ..+++++++|+|+|+|++
T Consensus        67 G~~v~~~~~-Gd~V~~~~-~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~v  141 (312)
T cd08269          67 GPGVRGLAV-GDRVAGLS-GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFI  141 (312)
T ss_pred             CCCCcCCCC-CCEEEEec-CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHH
Confidence            566777889 99998764 4899999999999999999988  222222377889999875 888999999999988999


Q ss_pred             HHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHH
Q 025336           82 GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET  161 (254)
Q Consensus        82 G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~  161 (254)
                      |++++|+|+.+|+.+|+++.+++++.+.++++|++.+++++.   .++.+.+.+++.+.++|+++||+|....+...+++
T Consensus       142 g~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~  218 (312)
T cd08269         142 GLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS---EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGEL  218 (312)
T ss_pred             HHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC---cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHH
Confidence            999999999999933999988888999999999988888776   77888888888777999999999876678999999


Q ss_pred             cccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCC-CCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHH
Q 025336          162 TKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI-KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ  240 (254)
Q Consensus       162 l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  240 (254)
                      ++++ |+++.+|.......++++..+.++++.+.+...... ...+.+++++++++++.++....+.+.+++++++++++
T Consensus       219 l~~~-g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  297 (312)
T cd08269         219 VAER-GRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFE  297 (312)
T ss_pred             hccC-CEEEEEccCCCCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHH
Confidence            9999 999999865433345555566668888887654322 12457889999999999765444567899999999999


Q ss_pred             HHcCCCe--eEEEE
Q 025336          241 LLKQPDC--VKVLI  252 (254)
Q Consensus       241 ~~~~~~~--~k~vi  252 (254)
                      .+.+++.  +|+++
T Consensus       298 ~~~~~~~~~~~~~~  311 (312)
T cd08269         298 AARRRPDGFIKGVI  311 (312)
T ss_pred             HHHhCCCCceEEEe
Confidence            9988755  68886

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.97  E-value=3.4e-28  Score=201.45  Aligned_cols=242  Identities=24%  Similarity=0.361  Sum_probs=196.3

Q ss_pred             CCCCcccccCCceeee---------------------------eeccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYH---------------------------IFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~---------------------------~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++.+|++ ||+|+.                           +...|+|++|++++++.++++|++++++++ +++.++
T Consensus        71 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~  148 (340)
T TIGR00692        71 GPGVEGIKV-GDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPL  148 (340)
T ss_pred             CCCCCcCCC-CCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchH
Confidence            667778999 999986                           223589999999999999999999998655 466888


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      .+|++++  .....++++|+|.|+|++|++++|+++.+|.+.|+++++++++.+.++++|++.++++.+   .++.+.+.
T Consensus       149 ~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~l~  223 (340)
T TIGR00692       149 GNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK---EDVVKEVA  223 (340)
T ss_pred             HHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc---cCHHHHHH
Confidence            8998876  345678999999888999999999999999944888888888999999999988898877   77888888


Q ss_pred             HhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHH-HHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          135 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVI-ALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      +..+++++|+++||+|+...+...+++++++ |+++.+|.... ...++.. .+.++++++.+...  ....+.+.++++
T Consensus       224 ~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  299 (340)
T TIGR00692       224 DLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPG-KVTIDFTNKVIFKGLTIYGITG--RHMFETWYTVSR  299 (340)
T ss_pred             HhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCC-CcccchhhhhhhcceEEEEEec--CCchhhHHHHHH
Confidence            8877778999999998766789999999999 99999987643 2222223 45557888877552  112345788999


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +++++++++.+.+.+.++++++.++++.+.+++.+|+|+++
T Consensus       300 ~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~  340 (340)
T TIGR00692       300 LIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL  340 (340)
T ss_pred             HHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            99999987656677889999999999998877657999874

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=2.7e-28  Score=201.74  Aligned_cols=215  Identities=22%  Similarity=0.406  Sum_probs=181.8

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+.++++.++++|+++++++++.+++.+.|||+++ ....++++++++|.|+|++|++++++++.+|+ +++++
T Consensus       122 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~  199 (337)
T cd05283         122 QGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAF  199 (337)
T ss_pred             CCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEE
Confidence            58999999999999999999999999999999999999997 45568999999998889999999999999999 89999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCcee
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV  180 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  180 (254)
                      ++++++.++++++|++.+++.+.   .+....   .  +.++|+++||++....+..++++++++ |+++.+|.... ..
T Consensus       200 ~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~---~--~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~  269 (337)
T cd05283         200 SRSPSKKEDALKLGADEFIATKD---PEAMKK---A--AGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEE-PL  269 (337)
T ss_pred             cCCHHHHHHHHHcCCcEEecCcc---hhhhhh---c--cCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCC-CC
Confidence            99999999999999998888765   333221   1  348999999999875589999999999 99999998655 22


Q ss_pred             eccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       181 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      ++++..++.++.++.+....   ..+.++.+++++++++++  +.+ +.++++++++||+.+.+++. +|+||+
T Consensus       270 ~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~l~--~~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         270 PVPPFPLIFGRKSVAGSLIG---GRKETQEMLDFAAEHGIK--PWV-EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             ccCHHHHhcCceEEEEeccc---CHHHHHHHHHHHHhCCCc--cce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            55666666799999998754   246788999999999854  444 68999999999999998887 598874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.97  E-value=6.8e-28  Score=199.72  Aligned_cols=241  Identities=20%  Similarity=0.297  Sum_probs=195.2

Q ss_pred             CCCCcccccCCceeeee---------------------------eccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..+++ ||+|+..                           ..+|+|++|+.+|++.++++|+++++++++.+ .++
T Consensus        73 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~  150 (341)
T PRK05396         73 GSEVTGFKV-GDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPF  150 (341)
T ss_pred             CCCCCcCCC-CCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHH
Confidence            677788999 9999854                           13589999999999999999999999888754 566


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      .+++.++..  ...+|++|+|.|+|++|++++|+++.+|++++++++.++++.++++++|++.++++++   .++.+.+.
T Consensus       151 ~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~  225 (341)
T PRK05396        151 GNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAK---EDLRDVMA  225 (341)
T ss_pred             HHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc---ccHHHHHH
Confidence            666665532  3458999999988999999999999999856888888889999999999999998887   77888888


Q ss_pred             HhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHH
Q 025336          135 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDK  214 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~  214 (254)
                      +++.++++|++|||.|+...+..++++++++ |+++.+|.... ..+++...+..+++++.++....  ..+.+..++++
T Consensus       226 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~  301 (341)
T PRK05396        226 ELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPG-DMAIDWNKVIFKGLTIKGIYGRE--MFETWYKMSAL  301 (341)
T ss_pred             HhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC-CCcccHHHHhhcceEEEEEEccC--ccchHHHHHHH
Confidence            8887779999999999877889999999999 99999987654 23334456666888888875221  23456678888


Q ss_pred             HhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          215 CKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +.++ +++.+.+.+.+++++++++|+.+.++..+|++++.
T Consensus       302 ~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~  340 (341)
T PRK05396        302 LQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDW  340 (341)
T ss_pred             HHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEec
Confidence            9888 54666677889999999999998877656998863

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.97  E-value=2.3e-28  Score=202.13  Aligned_cols=239  Identities=15%  Similarity=0.195  Sum_probs=189.4

Q ss_pred             CCCCCcccccCCceeeeee---ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCC-----CCE
Q 025336            1 MLDGTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEK-----GSS   72 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~   72 (254)
                      +|+++.+|++ ||+|+++.   ..|+|++|++++++.++++|+++++++++.++++++|||+++....++++     +++
T Consensus        73 vG~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~  151 (336)
T TIGR02817        73 VGDEVTLFKP-GDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRA  151 (336)
T ss_pred             eCCCCCCCCC-CCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCE
Confidence            3677888999 99998753   25899999999999999999999999999999999999999877888877     999


Q ss_pred             EEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           73 VAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        73 vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      |||+|+ |++|++++|+||.+ |+ +|++++.++++.++++++|+++++++.    .++...+.+. .++++|+++|+++
T Consensus       152 vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g~~~~~~~~----~~~~~~i~~~-~~~~vd~vl~~~~  225 (336)
T TIGR02817       152 LLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELGAHHVIDHS----KPLKAQLEKL-GLEAVSYVFSLTH  225 (336)
T ss_pred             EEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcCCCEEEECC----CCHHHHHHHh-cCCCCCEEEEcCC
Confidence            999986 99999999999998 99 899998999999999999999998754    3566677765 3448999999987


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecC--CCCC-------CCCHHHHHHHHhCCCCC
Q 025336          151 VPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG--GIKT-------KSDLPILLDKCKNKEFK  221 (254)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~--~~~~-------~~~~~~~~~~~~~~~~~  221 (254)
                      +...+...+++++++ |+++.++..    ..++...+..+++++.+....  ....       ...++++++++.++.++
T Consensus       226 ~~~~~~~~~~~l~~~-G~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  300 (336)
T TIGR02817       226 TDQHFKEIVELLAPQ-GRFALIDDP----AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIR  300 (336)
T ss_pred             cHHHHHHHHHHhccC-CEEEEEccc----ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCee
Confidence            656789999999999 999988532    233333444455666654322  1110       13467889999999855


Q ss_pred             CCCceEEEe---ecccHHHHHHHHcCCCe-eEEEEe
Q 025336          222 LHQLLTHHV---KLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       222 ~~~~~~~~~---~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                        +.+.+.+   +++++++||+.+.+++. +|++++
T Consensus       301 --~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       301 --TTLAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             --ccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence              3333445   46899999999988776 588764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.96  E-value=1.6e-27  Score=199.70  Aligned_cols=223  Identities=25%  Similarity=0.312  Sum_probs=184.0

Q ss_pred             CcceeeEEecCC--ceEEcCCCCCcc---ccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCe
Q 025336           22 STWSEYMVIDAN--YVVRVDPSIDLS---HASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAK   96 (254)
Q Consensus        22 g~~a~~~~v~~~--~v~~~p~~~~~~---~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~   96 (254)
                      |+|++|+++|..  .++++|++++++   +++.++.+++|||+++ ...++++|++|+|.|+|++|++++|+++.+|+.+
T Consensus       125 g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~  203 (375)
T cd08282         125 GGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASR  203 (375)
T ss_pred             CeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            889999999976  899999999998   5677888999999998 7889999999999988999999999999999757


Q ss_pred             EEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChh-----------HHHHHHHHcccC
Q 025336           97 IIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS-----------LLSEALETTKVG  165 (254)
Q Consensus        97 v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~-----------~~~~~~~~l~~~  165 (254)
                      |+++++++++.+.++++|+. .+++++   .++...+.++++ +++|+++||+|+..           .+..++++++++
T Consensus       204 vi~~~~~~~~~~~~~~~g~~-~v~~~~---~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  278 (375)
T cd08282         204 VYVVDHVPERLDLAESIGAI-PIDFSD---GDPVEQILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG  278 (375)
T ss_pred             EEEECCCHHHHHHHHHcCCe-EeccCc---ccHHHHHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC
Confidence            88898999999999999984 567766   677888888776 58999999999762           478999999999


Q ss_pred             CcEEEEEccCCC------------ceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecc
Q 025336          166 KGKVIVIGVGVD------------TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLE  233 (254)
Q Consensus       166 ~G~~v~~g~~~~------------~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                       |+++.+|....            ....++...+..++..+.+...   .....+.+++++++++++++..+++++++++
T Consensus       279 -g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~  354 (375)
T cd08282         279 -GGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQA---PVKKYNRQLRDLILAGRAKPSFVVSHVISLE  354 (375)
T ss_pred             -cEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecC---CchhhHHHHHHHHHcCCCChHHcEEEEeeHH
Confidence             99988876432            1133455556667777766542   2345688899999999977655578899999


Q ss_pred             cHHHHHHHHcCCCeeEEEEeC
Q 025336          234 EIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       234 ~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +++++++.+.++...|+|+++
T Consensus       355 ~~~~a~~~~~~~~~~kvvv~~  375 (375)
T cd08282         355 DAPEAYARFDKRLETKVVIKP  375 (375)
T ss_pred             HHHHHHHHHhcCCceEEEeCC
Confidence            999999999887755998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.96  E-value=1.3e-27  Score=199.66  Aligned_cols=243  Identities=21%  Similarity=0.393  Sum_probs=192.3

Q ss_pred             CCCCcccccCCceeeee------------------------ec----cCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHI------------------------FS----CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~------------------------~~----~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |+++.+|++ ||+|+..                        .+    .|+|++|+++|...++++|++++++++++. .+
T Consensus        89 G~~v~~~~~-Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~  166 (364)
T PLN02702         89 GSEVKHLVV-GDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EP  166 (364)
T ss_pred             CCCCCCCCC-CCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hH
Confidence            566778899 9999751                        11    489999999999999999999999988752 34


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.++++++ ...++.++++|||+|+|++|++++|+++.+|+..++++++++++.+.++++|++.++++.. ...++.+.+
T Consensus       167 ~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~  244 (364)
T PLN02702        167 LSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVST-NIEDVESEV  244 (364)
T ss_pred             HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCc-ccccHHHHH
Confidence            55678777 7788999999999998999999999999999966888888889999999999988765431 014566666


Q ss_pred             HHh--hCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHH
Q 025336          134 KGI--THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPIL  211 (254)
Q Consensus       134 ~~~--~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~  211 (254)
                      .++  ..+.++|+++||+|+...+..++++++++ |+++.+|.... ...+....+..+++++.+++..    ...++.+
T Consensus       245 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~  318 (364)
T PLN02702        245 EEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHN-EMTVPLTPAAAREVDVVGVFRY----RNTWPLC  318 (364)
T ss_pred             HHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC-CCcccHHHHHhCccEEEEeccC----hHHHHHH
Confidence            554  22348999999999766889999999999 99999996543 2334455566789999887532    3468889


Q ss_pred             HHHHhCCCCCCCCceEEEeec--ccHHHHHHHHcCCCe-eEEEEeC
Q 025336          212 LDKCKNKEFKLHQLLTHHVKL--EEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++++.+++++.+++.|++  +++++|++.+.+++. +|+++.+
T Consensus       319 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~~  364 (364)
T PLN02702        319 LEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL  364 (364)
T ss_pred             HHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEeC
Confidence            999999997766667778666  799999999887765 6998863

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.96  E-value=1.3e-28  Score=202.85  Aligned_cols=246  Identities=20%  Similarity=0.219  Sum_probs=194.9

Q ss_pred             CCCCcccccCCceeeee-eccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            2 LDGTSRMSVRGQKLYHI-FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~-~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      |+++..+++ ||+|+.. .+.|+|++|+.++...++++|+++++++++.++..+.+|+.++.....++++++|+|+|+ |
T Consensus        73 G~~v~~~~~-Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g  151 (327)
T PRK10754         73 GSGVKHIKV-GDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAG  151 (327)
T ss_pred             CCCCCCCCC-CCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCc
Confidence            567777889 9999754 345899999999999999999999999999988999999999877788999999999975 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      .+|++++|+++.+|+ +|++++.++++.++++++|++++++.+.   .++.+.+++.+++.++|+++||+++. .+...+
T Consensus       152 ~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~  226 (327)
T PRK10754        152 GVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINYRE---ENIVERVKEITGGKKVRVVYDSVGKD-TWEASL  226 (327)
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcCCC---CcHHHHHHHHcCCCCeEEEEECCcHH-HHHHHH
Confidence            999999999999999 8999989999999999999988988876   77888888888877999999999986 778899


Q ss_pred             HHcccCCcEEEEEccCCCceeeccHHHHHhCCCEE-Eeeec-CCCCCC----CCHHHHHHHHhCCCCCCCCceEEEeecc
Q 025336          160 ETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTL-KGTTF-GGIKTK----SDLPILLDKCKNKEFKLHQLLTHHVKLE  233 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i-~g~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                      ++++++ |+++.+|........++...+..++... ..... ..+...    ..+..+++++.++.+++.....+.|+++
T Consensus       227 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~  305 (327)
T PRK10754        227 DCLQRR-GLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLK  305 (327)
T ss_pred             HHhccC-CEEEEEccCCCCCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHH
Confidence            999999 9999998764311223333333222211 11111 111111    1244578899999977555456789999


Q ss_pred             cHHHHHHHHcCCCe-eEEEEeC
Q 025336          234 EIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       234 ~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++++.+.++.. .|+||.+
T Consensus       306 ~~~~a~~~~~~~~~~~~~~~~~  327 (327)
T PRK10754        306 DAQRAHEILESRATQGSSLLIP  327 (327)
T ss_pred             HHHHHHHHHHcCCCcceEEEeC
Confidence            99999999988776 5999863

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.96  E-value=1.4e-27  Score=197.72  Aligned_cols=237  Identities=24%  Similarity=0.348  Sum_probs=190.7

Q ss_pred             CCCCcccccCCceeeee------------------------e--------ccCcceeeEEecCCceEEcCCCCCcccccc
Q 025336            2 LDGTSRMSVRGQKLYHI------------------------F--------SCSTWSEYMVIDANYVVRVDPSIDLSHASF   49 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~------------------------~--------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~   49 (254)
                      |+++..|++ ||+|+..                        .        ..|+|++|++++++.++++|+++++++++.
T Consensus        69 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~  147 (339)
T cd08232          69 GPGVTGLAP-GQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL  147 (339)
T ss_pred             CCCCCcCCC-CCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh
Confidence            667778999 9999751                        1        248999999999999999999999999876


Q ss_pred             ccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchH
Q 025336           50 LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSI  129 (254)
Q Consensus        50 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  129 (254)
                       +.++++||+++.....+ ++++|||.|+|.+|++++|+++.+|+.+++++++++++.+.++++|+++++++++   .++
T Consensus       148 -~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~---~~~  222 (339)
T cd08232         148 -AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR---DPL  222 (339)
T ss_pred             -cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc---hhh
Confidence             57888999988655555 8999999988999999999999999867889888888888889999999998875   432


Q ss_pred             HHHHHHhh-CCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCH
Q 025336          130 SELVKGIT-HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDL  208 (254)
Q Consensus       130 ~~~i~~~~-~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  208 (254)
                          .+.. ...++|+++||.++...+...+++++++ |+++.+|.... ....++..++.+++++.+....    .+.+
T Consensus       223 ----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~  292 (339)
T cd08232         223 ----AAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLGG-PVPLPLNALVAKELDLRGSFRF----DDEF  292 (339)
T ss_pred             ----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC-CccCcHHHHhhcceEEEEEecC----HHHH
Confidence                2222 2336999999999765789999999999 99999986542 3344444455588888876522    3568


Q ss_pred             HHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          209 PILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++++++.+++.+.+.++|++++++++++.+.++.. +|+|+++
T Consensus       293 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         293 AEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             HHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence            889999999997766667788999999999999877665 6999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd05281 TDH Threonine dehydrogenase

Probab=99.96  E-value=1.3e-27  Score=197.96  Aligned_cols=241  Identities=26%  Similarity=0.409  Sum_probs=193.7

Q ss_pred             CCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..|++ ||+|++..                           ..|+|++|++++++.++++|++++++.+ +++.++
T Consensus        73 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~  150 (341)
T cd05281          73 GEGVTRVKV-GDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPL  150 (341)
T ss_pred             CCCCCCCCC-CCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHH
Confidence            556667889 99998641                           3489999999999999999999988554 566788


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      .++++++.  ...+++++|||.|+|++|++++|+++.+|+.+|+++++++++.+.++++|++++++++.   .++. .+.
T Consensus       151 ~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~  224 (341)
T cd05281         151 GNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPRE---EDVV-EVK  224 (341)
T ss_pred             HHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc---ccHH-HHH
Confidence            88888764  44578999999988999999999999999856888888889999999999998888876   6777 788


Q ss_pred             HhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHH-HHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          135 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVI-ALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      +..+++++|++|||+|+......++++++++ |+++.+|.... ...+++. .+..+++.+.+....  ...+.+.++++
T Consensus       225 ~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  300 (341)
T cd05281         225 SVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPG-PVDIDLNNLVIFKGLTVQGITGR--KMFETWYQVSA  300 (341)
T ss_pred             HHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCC-CcccccchhhhccceEEEEEecC--CcchhHHHHHH
Confidence            8888779999999999876789999999999 99999986544 2222222 245578888776522  12356788999


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      ++.++.+.+.+.+...+++++++++|+.+.++..+|+|+++
T Consensus       301 ~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~gk~vv~~  341 (341)
T cd05281         301 LLKSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP  341 (341)
T ss_pred             HHHcCCCChhHheEEEecHHHHHHHHHHHhcCCCceEEecC
Confidence            99999977666677789999999999999887745999864

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.96  E-value=1.3e-27  Score=197.87  Aligned_cols=237  Identities=22%  Similarity=0.329  Sum_probs=193.0

Q ss_pred             CCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |+++..|++ ||+|+..                            ...|+|++|+.+|...++++|+++++++++.++.+
T Consensus        69 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~  147 (338)
T PRK09422         69 GPGVTSLKV-GDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCA  147 (338)
T ss_pred             CCCCccCCC-CCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcc
Confidence            667778899 9999741                            12489999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARM-QGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~-~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      ++|||+++ ...+++++++|||+|+|++|++++++|+. .|+ +|+++++++++.+.++++|++.+++++.  ..++.+.
T Consensus       148 ~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~  223 (338)
T PRK09422        148 GVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKR--VEDVAKI  223 (338)
T ss_pred             hhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEecccc--cccHHHH
Confidence            99999998 77889999999999999999999999998 599 8999999999999999999998888752  1445666


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      +++..+  ++|.++++.++...+..++++++++ |+++.+|.... ..+++...+..++..+.++...   ..+.+++++
T Consensus       224 v~~~~~--~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  296 (338)
T PRK09422        224 IQEKTG--GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPPE-SMDLSIPRLVLDGIEVVGSLVG---TRQDLEEAF  296 (338)
T ss_pred             HHHhcC--CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCCC-CceecHHHHhhcCcEEEEecCC---CHHHHHHHH
Confidence            776654  6886655555555889999999999 99999987644 3444555566688888776432   245688899


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      +++++++++  +.+. .+++++++++|+.+.++.. +|++++
T Consensus       297 ~l~~~g~l~--~~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~  335 (338)
T PRK09422        297 QFGAEGKVV--PKVQ-LRPLEDINDIFDEMEQGKIQGRMVID  335 (338)
T ss_pred             HHHHhCCCC--ccEE-EEcHHHHHHHHHHHHcCCccceEEEe
Confidence            999999854  4454 5899999999999988766 588875

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=6.5e-28  Score=196.79  Aligned_cols=234  Identities=22%  Similarity=0.302  Sum_probs=191.1

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |+++..|++ ||+|+++...|+|++|+.++.+.++++|+++++++++.+++.+.|||+++...... ++++|+|+|+ |+
T Consensus        67 G~~v~~~~~-Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~  144 (305)
T cd08270          67 AADGSGPAV-GARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGG  144 (305)
T ss_pred             CCCCCCCCC-CCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcH
Confidence            667778899 99999886569999999999999999999999999999999999999998655544 5999999987 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                      +|++++++++..|+ +|+.+++++++.+.++++|++.+++...           ++.+ +++|+++||+|+. .+..+++
T Consensus       145 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~-~~~d~vl~~~g~~-~~~~~~~  210 (305)
T cd08270         145 VGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVGGS-----------ELSG-APVDLVVDSVGGP-QLARALE  210 (305)
T ss_pred             HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEeccc-----------cccC-CCceEEEECCCcH-HHHHHHH
Confidence            99999999999999 8999999999999999999876654332           1222 3799999999987 7899999


Q ss_pred             HcccCCcEEEEEccCCCceeeccHHHHHh--CCCEEEeeecCC-CCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHH
Q 025336          161 TTKVGKGKVIVIGVGVDTMVPLNVIALAC--GGRTLKGTTFGG-IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDK  237 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~--~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (254)
                      +++++ |+++.+|........++...+..  ++.++.++.... ......+..+++++++++++.  .+.+.++++++++
T Consensus       211 ~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~  287 (305)
T cd08270         211 LLAPG-GTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDP--RIGWRGSWTEIDE  287 (305)
T ss_pred             HhcCC-CEEEEEeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccc--eeccEEcHHHHHH
Confidence            99999 99999987543234445555553  588888887553 112345788899999999664  3667899999999


Q ss_pred             HHHHHcCCCe-eEEEEeC
Q 025336          238 AIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       238 a~~~~~~~~~-~k~vi~~  254 (254)
                      +++.+.++.. +|+|+++
T Consensus       288 a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         288 AAEALLARRFRGKAVLDV  305 (305)
T ss_pred             HHHHHHcCCCCceEEEeC
Confidence            9999987766 5999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.96  E-value=2.9e-29  Score=220.40  Aligned_cols=236  Identities=18%  Similarity=0.238  Sum_probs=206.4

Q ss_pred             CceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE-cCCHHHHHHHHHHH
Q 025336           12 GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL-GLGTVGLGAVDGAR   90 (254)
Q Consensus        12 Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-G~g~~G~~~~~~a~   90 (254)
                      |.||++...--++++.+.++.+.+|.+|.+.++++|++.|+.|.|||++|..+++.++|++|||+ |+|++|++++.+|.
T Consensus      1495 GrRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiAL 1574 (2376)
T KOG1202|consen 1495 GRRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIAL 1574 (2376)
T ss_pred             CcEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHH
Confidence            88888887667899999999999999999999999999999999999999999999999999999 56999999999999


Q ss_pred             HcCCCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCC
Q 025336           91 MQGAAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK  166 (254)
Q Consensus        91 ~~g~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~  166 (254)
                      ..|+ +|+.++.++||++++...    -..++-|.++   .++.+.+.+.+.|+|+|+|++....+ .+..+++|++.. 
T Consensus      1575 a~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd---tsFEq~vl~~T~GrGVdlVLNSLaeE-kLQASiRCLa~~- 1648 (2376)
T KOG1202|consen 1575 AHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSRD---TSFEQHVLWHTKGRGVDLVLNSLAEE-KLQASIRCLALH- 1648 (2376)
T ss_pred             HcCC-EEEEecCcHHHHHHHHHhchhhhhhccccccc---ccHHHHHHHHhcCCCeeeehhhhhHH-HHHHHHHHHHhc-
Confidence            9999 999999999999998652    3566778888   99999999999999999999999987 789999999999 


Q ss_pred             cEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCC--CCCCHHHHHHHHhCCCCC--CCCceEEEeecccHHHHHHH
Q 025336          167 GKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIK--TKSDLPILLDKCKNKEFK--LHQLLTHHVKLEEIDKAIQL  241 (254)
Q Consensus       167 G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~  241 (254)
                      ||+..+|-... +..++.+.-++ ++.++.|..+.+.-  +.+++.++..++++|.-.  .+|+.+++|+-.++++||+.
T Consensus      1649 GRFLEIGKfDLSqNspLGMavfL-kNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRf 1727 (2376)
T KOG1202|consen 1649 GRFLEIGKFDLSQNSPLGMAVFL-KNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRF 1727 (2376)
T ss_pred             CeeeeecceecccCCcchhhhhh-cccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHH
Confidence            99999997765 55667776666 99999998755443  245577777777766433  67888999999999999999


Q ss_pred             HcCCCee-EEEEeC
Q 025336          242 LKQPDCV-KVLITI  254 (254)
Q Consensus       242 ~~~~~~~-k~vi~~  254 (254)
                      |.+|+.+ |+||++
T Consensus      1728 MasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1728 MASGKHIGKVVIKV 1741 (2376)
T ss_pred             HhccCccceEEEEE
Confidence            9999985 999874

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=2.4e-27  Score=195.86  Aligned_cols=238  Identities=22%  Similarity=0.364  Sum_probs=193.8

Q ss_pred             CCCCcccccCCceeeee------------------------e---ccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYHI------------------------F---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~------------------------~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..+++ ||+|+..                        .   ..|+|++|+.+|++.++++|+++++.+++.+ .++
T Consensus        68 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~  145 (334)
T cd08234          68 GSKVTGFKV-GDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPL  145 (334)
T ss_pred             CCCCCCCCC-CCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHH
Confidence            667778999 9999751                        1   2489999999999999999999999998766 778


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      .++++++ ...+++++++|||+|+|.+|++++++|+..|+++|+++++++++.++++++|++.++++.+   .+....  
T Consensus       146 ~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~--  219 (334)
T cd08234         146 SCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR---EDPEAQ--  219 (334)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC---CCHHHH--
Confidence            8999988 7889999999999988999999999999999944888889999999999999888888776   554444  


Q ss_pred             HhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          135 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      +...++++|+++||++....+...+++++++ |+++.+|.... ...+++...+..+++++.+....    ...++++++
T Consensus       220 ~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  294 (334)
T cd08234         220 KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN----PYTFPRAIA  294 (334)
T ss_pred             HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC----HHHHHHHHH
Confidence            3445558999999998766788999999999 99999987653 23445555555578888877532    345888999


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEE
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI  252 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  252 (254)
                      ++.++++...+.++.++++++++++++.+.+...+|+||
T Consensus       295 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  333 (334)
T cd08234         295 LLESGKIDVKGLVSHRLPLEEVPEALEGMRSGGALKVVV  333 (334)
T ss_pred             HHHcCCCChhhhEEEEecHHHHHHHHHHHhcCCceEEEe
Confidence            999999776555677899999999999998733368876

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=3e-27  Score=193.60  Aligned_cols=244  Identities=23%  Similarity=0.277  Sum_probs=200.9

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |+++.++++ ||+|+++...|+|++|+.++.+.++++|+.+++++++.++..++++++++....+++++++|||+|+ |+
T Consensus        70 g~~~~~~~~-G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~  148 (320)
T cd05286          70 GPGVTGFKV-GDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGG  148 (320)
T ss_pred             CCCCCCCCC-CCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCch
Confidence            566778899 9999977535899999999999999999999999999999999999999888889999999999995 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                      +|++++++++.+|+ +|++++.++++.+.++++|++.+++..+   .++...+.+.+.+.++|.++||+++. .+...++
T Consensus       149 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~~  223 (320)
T cd05286         149 VGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRD---EDFVERVREITGGRGVDVVYDGVGKD-TFEGSLD  223 (320)
T ss_pred             HHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCCc---hhHHHHHHHHcCCCCeeEEEECCCcH-hHHHHHH
Confidence            99999999999999 8999989999999999999988888776   67888888887777899999999986 7889999


Q ss_pred             HcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC-----CCCHHHHHHHHhCCCCCCCCceEEEeecccH
Q 025336          161 TTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT-----KSDLPILLDKCKNKEFKLHQLLTHHVKLEEI  235 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                      +++++ |+++.+|........++...+..+++++.+.....+..     ...+.++++++.++.++.  ..++.|+++++
T Consensus       224 ~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~  300 (320)
T cd05286         224 SLRPR-GTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKV--EIGKRYPLADA  300 (320)
T ss_pred             hhccC-cEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcC--cccceEcHHHH
Confidence            99999 99999987654222344444546888887665332221     123456788888888554  35678999999


Q ss_pred             HHHHHHHcCCCe-eEEEEeC
Q 025336          236 DKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       236 ~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++|+.+.++.. .|+++++
T Consensus       301 ~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         301 AQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             HHHHHHHHcCCCCceEEEeC
Confidence            999999987766 5888864

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.96  E-value=1.8e-27  Score=196.02  Aligned_cols=239  Identities=19%  Similarity=0.204  Sum_probs=184.3

Q ss_pred             CcccccCCceeeeee------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHh--cCC-CCCCEEEE
Q 025336            5 TSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKE--AEV-EKGSSVAV   75 (254)
Q Consensus         5 ~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~-~~~~~vlI   75 (254)
                      +..|++ ||+|+...      ..|+|++|+++|++.++++|+++++++++.+++++.||+.++...  ..+ .++++|||
T Consensus        74 ~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI  152 (326)
T cd08289          74 DPRFKP-GDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLV  152 (326)
T ss_pred             CCCCCC-CCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence            356788 99998753      358999999999999999999999999999999999999887532  233 34789999


Q ss_pred             EcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           76 LGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        76 ~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      +|+ |++|++++|+|+.+|+ +|+++++++++.++++++|++.++++++   . ..+.+.+.. +.++|+++||+|+. .
T Consensus       153 ~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~-~~~~~~~~~-~~~~d~vld~~g~~-~  225 (326)
T cd08289         153 TGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEVIPREE---L-QEESIKPLE-KQRWAGAVDPVGGK-T  225 (326)
T ss_pred             EcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEEEcchh---H-HHHHHHhhc-cCCcCEEEECCcHH-H
Confidence            987 9999999999999999 8999999999999999999988888764   3 345555654 45899999999985 7


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCC---CCCceEEEee
Q 025336          155 LSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFK---LHQLLTHHVK  231 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  231 (254)
                      +...+++++++ |+++.+|.......+++...++.++.++.+....... ......+++.+.. .+.   ..+.+.++++
T Consensus       226 ~~~~~~~l~~~-G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  302 (326)
T cd08289         226 LAYLLSTLQYG-GSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECP-MELRRRIWRRLAT-DLKPTQLLNEIKQEIT  302 (326)
T ss_pred             HHHHHHHhhcC-CEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecC-chHHHHHHHHHHh-hcCccccccccceEee
Confidence            89999999999 9999999764323344455565689999997532110 1123334443332 221   2234578899


Q ss_pred             cccHHHHHHHHcCCCe-eEEEEeC
Q 025336          232 LEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       232 ~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++||+.+.+++. +|+++++
T Consensus       303 l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         303 LDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             HHHHHHHHHHHhcCcccceEEEeC
Confidence            9999999999988777 5998864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=2.7e-27  Score=194.43  Aligned_cols=211  Identities=21%  Similarity=0.302  Sum_probs=176.4

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      +|+|++|+++|++.++++|+++++++++.+ .++.+++.++ ...+++++++|||+|+|.+|++++|+++.+|+ +|+++
T Consensus       109 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~-~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~  185 (319)
T cd08242         109 DGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEIL-EQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLV  185 (319)
T ss_pred             CCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEE
Confidence            589999999999999999999999888864 4555666554 78889999999999989999999999999999 79999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCcee
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV  180 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  180 (254)
                      +.++++.++++++|++.++++++   .         +.+.++|+++||+|+...+..++++++++ |+++..+.... ..
T Consensus       186 ~~~~~~~~~~~~~g~~~~~~~~~---~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~~-~~  251 (319)
T cd08242         186 GRHSEKLALARRLGVETVLPDEA---E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYAG-PA  251 (319)
T ss_pred             cCCHHHHHHHHHcCCcEEeCccc---c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCC-CC
Confidence            89999999999999988877653   1         34458999999999866789999999999 99998776443 34


Q ss_pred             eccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       181 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++...+..++.++.+...+      .+++++++++++++++.+.+++.|+++++++||+.+.++..+|+||++
T Consensus       252 ~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~~  319 (319)
T cd08242         252 SFDLTKAVVNEITLVGSRCG------PFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLRP  319 (319)
T ss_pred             ccCHHHheecceEEEEEecc------cHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeCC
Confidence            45555666688888887532      388899999999987667788899999999999999877667999874

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=4.5e-27  Score=194.23  Aligned_cols=242  Identities=25%  Similarity=0.387  Sum_probs=201.8

Q ss_pred             CCCCcccccCCceeeeee---------------------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHH
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA   60 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~   60 (254)
                      |+++..|++ ||+|++..                     ..|+|++|+.++.+.++++|+++++.+++.+++++++||++
T Consensus        73 G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~  151 (336)
T cd08276          73 GEGVTRFKV-GDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNA  151 (336)
T ss_pred             CCCCcCCCC-CCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHH
Confidence            566677888 99998754                     14789999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCC
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      +.....++++++|+|+|+|++|++++++++..|+ +|++++.++++.+.++++|.+.+++...  ..++...+.+.+++.
T Consensus       152 l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~  228 (336)
T cd08276         152 LFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRT--TPDWGEEVLKLTGGR  228 (336)
T ss_pred             HHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCCc--ccCHHHHHHHHcCCC
Confidence            8777889999999999889999999999999999 8999999999999998899988887653  135667788888777


Q ss_pred             CccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCC
Q 025336          141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEF  220 (254)
Q Consensus       141 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  220 (254)
                      ++|.++|+++.. .+..++++++++ |+++.+|.............++.+++++.+.....   ...+.++++++.++.+
T Consensus       229 ~~d~~i~~~~~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l  303 (336)
T cd08276         229 GVDHVVEVGGPG-TLAQSIKAVAPG-GVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGS---RAQFEAMNRAIEAHRI  303 (336)
T ss_pred             CCcEEEECCChH-HHHHHHHhhcCC-CEEEEEccCCCCccCcCHHHHhhcceEEEEEecCc---HHHHHHHHHHHHcCCc
Confidence            999999999865 788999999999 99999997654222344556666999999987543   4568889999988875


Q ss_pred             CCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          221 KLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       221 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ..  ..++.+++++++++|+.+.++.. .|+++++
T Consensus       304 ~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  336 (336)
T cd08276         304 RP--VIDRVFPFEEAKEAYRYLESGSHFGKVVIRV  336 (336)
T ss_pred             cc--ccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            43  34578999999999999887766 5888864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.96  E-value=3.6e-27  Score=194.06  Aligned_cols=238  Identities=19%  Similarity=0.221  Sum_probs=183.3

Q ss_pred             CcccccCCceeeeee------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhc--CCC-CCCEEEE
Q 025336            5 TSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEA--EVE-KGSSVAV   75 (254)
Q Consensus         5 ~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~--~~~-~~~~vlI   75 (254)
                      +..|++ ||+|++..      ..|+|++|+++|++.++++|+++++++++.+++.+.+|+.++....  ++. .+++|+|
T Consensus        74 ~~~~~~-Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI  152 (325)
T cd05280          74 DPRFRE-GDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLV  152 (325)
T ss_pred             CCCCCC-CCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence            345788 99998642      3589999999999999999999999999999999999999875443  335 3579999


Q ss_pred             EcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           76 LGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        76 ~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      +|+ |++|++++|+|+.+|+ +|+++++++++.++++++|+++++++++   .  ...+.+...++++|+++||++++ .
T Consensus       153 ~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~--~~~~~~~~~~~~~d~vi~~~~~~-~  225 (325)
T cd05280         153 TGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEVLDRED---L--LDESKKPLLKARWAGAIDTVGGD-V  225 (325)
T ss_pred             ECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEcchh---H--HHHHHHHhcCCCccEEEECCchH-H
Confidence            997 9999999999999999 8999999999999999999999887664   2  12223333444799999999986 7


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEee
Q 025336          155 LSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHVK  231 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (254)
                      +...+++++++ |+++.+|.......+++...++.++.++.+........   ...++.+.+++..+.   .+.+..+++
T Consensus       226 ~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  301 (325)
T cd05280         226 LANLLKQTKYG-GVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDL---LEIVVREIS  301 (325)
T ss_pred             HHHHHHhhcCC-CEEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCC---ccceeeEec
Confidence            89999999999 99999997654222445555545889998876543211   112333444444443   223667899


Q ss_pred             cccHHHHHHHHcCCCe-eEEEEeC
Q 025336          232 LEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       232 ~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++++++.+.++.. +|+|+++
T Consensus       302 ~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         302 LEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             HHHHHHHHHHHhcCCcceEEEEeC
Confidence            9999999999988776 5999875

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=2.2e-27  Score=194.77  Aligned_cols=234  Identities=20%  Similarity=0.322  Sum_probs=188.9

Q ss_pred             cccccCCceeeeeec------cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-
Q 025336            6 SRMSVRGQKLYHIFS------CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-   78 (254)
Q Consensus         6 ~~~~~~Gd~v~~~~~------~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-   78 (254)
                      ..+++ ||+|+++..      .|+|++|+.+++..++++|+++++++++.++.++.|||+++....+++++++|||+|+ 
T Consensus        74 ~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~  152 (320)
T cd08243          74 GTFTP-GQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGT  152 (320)
T ss_pred             CCCCC-CCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            35788 999987642      3899999999999999999999999999999999999999877788999999999987 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      |++|++++|+|+.+|+ +|++++.++++.+.++++|++++++. .   .++...+.++  ++++|+++||+++. .+...
T Consensus       153 g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-~---~~~~~~i~~~--~~~~d~vl~~~~~~-~~~~~  224 (320)
T cd08243         153 SSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID-D---GAIAEQLRAA--PGGFDKVLELVGTA-TLKDS  224 (320)
T ss_pred             ChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-C---ccHHHHHHHh--CCCceEEEECCChH-HHHHH
Confidence            9999999999999999 89999899999999999999888754 3   5677777777  45899999999986 78999


Q ss_pred             HHHcccCCcEEEEEccCCC-ce-eeccHHHHH--hCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeeccc
Q 025336          159 LETTKVGKGKVIVIGVGVD-TM-VPLNVIALA--CGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEE  234 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~-~~-~~~~~~~~~--~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (254)
                      +++++++ |+++.+|...+ .. .........  .++..+.+....... ...+++++++++++.++.  ..++.+++++
T Consensus       225 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  300 (320)
T cd08243         225 LRHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVP-QTPLQELFDFVAAGHLDI--PPSKVFTFDE  300 (320)
T ss_pred             HHHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhh-HHHHHHHHHHHHCCceec--ccccEEcHHH
Confidence            9999999 99999997533 11 111122222  467777776533211 235778889999998653  3567899999


Q ss_pred             HHHHHHHHcCCCe-eEEEE
Q 025336          235 IDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       235 ~~~a~~~~~~~~~-~k~vi  252 (254)
                      +++|++.+.++.. .|+|+
T Consensus       301 ~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         301 IVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             HHHHHHHHHhCCCCCcEEe
Confidence            9999999987766 47775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=183.63  Aligned_cols=240  Identities=22%  Similarity=0.281  Sum_probs=192.8

Q ss_pred             CCCcccccCCceeeeeeccCcceeeEEecCCc--eEEcCC--CCCccc-cccccchhhhhhHHHHHhcCCCCCCEEEEEc
Q 025336            3 DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANY--VVRVDP--SIDLSH-ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG   77 (254)
Q Consensus         3 ~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~--v~~~p~--~~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G   77 (254)
                      ++.+.|++ ||.|+++.+   |.||.++++..  .+++|.  +.++.- ..++..+.+|||..+++...+++|++|+|.|
T Consensus        86 S~~~~~~~-GD~v~g~~g---Weeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSa  161 (343)
T KOG1196|consen   86 SGHPNYKK-GDLVWGIVG---WEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSA  161 (343)
T ss_pred             cCCCCCCc-CceEEEecc---ceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEee
Confidence            45678999 999999886   99999998753  455544  333332 2336788999999999999999999999998


Q ss_pred             C-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHH
Q 025336           78 L-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  155 (254)
Q Consensus        78 ~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  155 (254)
                      | |++|+++-|+||.+|| +|++...++||.++++. +|.+..+||.+  +.+..+++++..+. ++|+.||.+|+. .+
T Consensus       162 AsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~--e~~~~~aL~r~~P~-GIDiYfeNVGG~-~l  236 (343)
T KOG1196|consen  162 ASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE--ESDLSAALKRCFPE-GIDIYFENVGGK-ML  236 (343)
T ss_pred             ccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC--ccCHHHHHHHhCCC-cceEEEeccCcH-HH
Confidence            6 9999999999999999 99999999999999865 69999999998  23788888886665 999999999998 78


Q ss_pred             HHHHHHcccCCcEEEEEccCCC----ceeec-cHHHHHhCCCEEEeeecCCCCC--CCCHHHHHHHHhCCCCCCCCceEE
Q 025336          156 SEALETTKVGKGKVIVIGVGVD----TMVPL-NVIALACGGRTLKGTTFGGIKT--KSDLPILLDKCKNKEFKLHQLLTH  228 (254)
Q Consensus       156 ~~~~~~l~~~~G~~v~~g~~~~----~~~~~-~~~~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  228 (254)
                      +..+..++.. ||++.||..+.    .+..+ +...++.|++++.|+....+..  .+.++.+..++++|||+..+.+. 
T Consensus       237 Davl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi~-  314 (343)
T KOG1196|consen  237 DAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDIA-  314 (343)
T ss_pred             HHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhHH-
Confidence            9999999998 99999997663    11121 2334566999999987655432  34567788899999988765543 


Q ss_pred             EeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          229 HVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                       -.|++.++||.-|.+|++ +|.++.+
T Consensus       315 -~Glen~P~A~vglf~GkNvGKqiv~v  340 (343)
T KOG1196|consen  315 -DGLENGPSALVGLFHGKNVGKQLVKV  340 (343)
T ss_pred             -HHHhccHHHHHHHhccCcccceEEEe
Confidence             369999999999999888 5888753

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.96  E-value=1.1e-26  Score=190.98  Aligned_cols=238  Identities=18%  Similarity=0.222  Sum_probs=185.8

Q ss_pred             CCcccccCCceeeeee------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHH--hcCCCCCC-EEE
Q 025336            4 GTSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWK--EAEVEKGS-SVA   74 (254)
Q Consensus         4 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~-~vl   74 (254)
                      ++..|++ ||+|+...      ..|+|++|+.+|+..++++|+++++++++.++..+.+|+.++..  ..++.+++ +|+
T Consensus        72 ~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vl  150 (323)
T TIGR02823        72 EDPRFRE-GDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVL  150 (323)
T ss_pred             CCCCCCC-CCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEE
Confidence            3456889 99998653      35899999999999999999999999999999999999887643  23478898 999


Q ss_pred             EEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChh
Q 025336           75 VLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  153 (254)
Q Consensus        75 I~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  153 (254)
                      |+|+ |++|++++++|+.+|+ ++++++.++++.++++++|++.+++.++   .+.  .+..+..+ ++|.++||+|+. 
T Consensus       151 I~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~~~~~~-~~d~vld~~g~~-  222 (323)
T TIGR02823       151 VTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVIDRED---LSP--PGKPLEKE-RWAGAVDTVGGH-  222 (323)
T ss_pred             EEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEEcccc---HHH--HHHHhcCC-CceEEEECccHH-
Confidence            9997 9999999999999999 7888888888889999999988887654   332  44455554 599999999987 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEe
Q 025336          154 LLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHV  230 (254)
Q Consensus       154 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                      .+..++++++++ |+++.+|.........+...++.++.++.+........   ...+..+.+++..+.++  +. .+.+
T Consensus       223 ~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~  298 (323)
T TIGR02823       223 TLANVLAQLKYG-GAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLE--SI-TREI  298 (323)
T ss_pred             HHHHHHHHhCCC-CEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCc--Cc-eeee
Confidence            689999999999 99999997644233344455546899998876432111   11245556666677643  33 4589


Q ss_pred             ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          231 KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       231 ~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++++||+.+.+++. +|+|+++
T Consensus       299 ~l~~~~~a~~~~~~~~~~~k~vv~~  323 (323)
T TIGR02823       299 TLEELPEALEQILAGQHRGRTVVDV  323 (323)
T ss_pred             cHHHHHHHHHHHhCCCccceEEEeC
Confidence            99999999999988776 4998864

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.96  E-value=1e-26  Score=192.46  Aligned_cols=236  Identities=21%  Similarity=0.308  Sum_probs=188.4

Q ss_pred             CCCCcccccCCceeeeeec--------cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCC------
Q 025336            2 LDGTSRMSVRGQKLYHIFS--------CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEV------   67 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~--------~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~------   67 (254)
                      |+++..|++ ||+|+++..        +|+|++|+++|...++++|+++++++++.+++++.|||+++....++      
T Consensus        70 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~  148 (339)
T cd08249          70 GSGVTRFKV-GDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPK  148 (339)
T ss_pred             CCCcCcCCC-CCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCC
Confidence            667778999 999998642        48999999999999999999999999999999999999998665544      


Q ss_pred             ----CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           68 ----EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        68 ----~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                          .++++|||+|+ |++|++++++++.+|+ +|+++. ++++.+.++++|+++++++++   .++.+.+++..+ +++
T Consensus       149 ~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~-~~~  222 (339)
T cd08249         149 PSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLGADAVFDYHD---PDVVEDIRAATG-GKL  222 (339)
T ss_pred             CCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcCCCEEEECCC---chHHHHHHHhcC-CCe
Confidence                78999999997 8999999999999999 888876 668999999999999998887   778888887776 489


Q ss_pred             cEEEEcCCChhHHHHHHHHccc--CCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCC---------CCCCCHHHH
Q 025336          143 DYCFECTGVPSLLSEALETTKV--GKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI---------KTKSDLPIL  211 (254)
Q Consensus       143 d~v~d~~g~~~~~~~~~~~l~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~---------~~~~~~~~~  211 (254)
                      |+++|++|++..+..+++++++  + |+++.+|...... .+      ..+...........         .....+..+
T Consensus       223 d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (339)
T cd08249         223 RYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEET-EP------RKGVKVKFVLGYTVFGEIPEDREFGEVFWKYL  294 (339)
T ss_pred             eEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccc-cC------CCCceEEEEEeeeecccccccccchHHHHHHH
Confidence            9999999985588999999999  9 9999998765411 11      12222222211110         112346678


Q ss_pred             HHHHhCCCCCCCCceEEEee--cccHHHHHHHHcCCC-e-eEEEEeC
Q 025336          212 LDKCKNKEFKLHQLLTHHVK--LEEIDKAIQLLKQPD-C-VKVLITI  254 (254)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~-~-~k~vi~~  254 (254)
                      +++++++++.+.  ....++  ++++++||+.+..++ . .|+|+++
T Consensus       295 ~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         295 PELLEEGKLKPH--PVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             HHHHHcCCccCC--CceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            889999987654  334567  999999999998877 5 5999875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.96  E-value=6e-27  Score=193.11  Aligned_cols=240  Identities=23%  Similarity=0.243  Sum_probs=193.0

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |+++..+++ ||+|++.. .|+|++|+.++...++++|+.  +.+++.++.++.|||+++....+++++++|+|+|+ |.
T Consensus        76 G~~v~~~~~-Gd~V~~~~-~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~  151 (329)
T cd08250          76 GEGVTDFKV-GDAVATMS-FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGG  151 (329)
T ss_pred             CCCCCCCCC-CCEEEEec-CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccH
Confidence            566677889 99999765 489999999999999999997  45677888999999999877788999999999985 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                      +|++++|+++..|+ +|+++++++++.++++++|++.+++..+   .++...+.+..+ +++|+++|++|+. .+...++
T Consensus       152 ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~-~~vd~v~~~~g~~-~~~~~~~  225 (329)
T cd08250         152 TGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRPINYKT---EDLGEVLKKEYP-KGVDVVYESVGGE-MFDTCVD  225 (329)
T ss_pred             HHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceEEeCCC---ccHHHHHHHhcC-CCCeEEEECCcHH-HHHHHHH
Confidence            99999999999999 8999989999999999999988887776   666667766654 5899999999975 7899999


Q ss_pred             HcccCCcEEEEEccCCCc----------eeeccHHHHHhCCCEEEeeecCCCC--CCCCHHHHHHHHhCCCCCCCCceEE
Q 025336          161 TTKVGKGKVIVIGVGVDT----------MVPLNVIALACGGRTLKGTTFGGIK--TKSDLPILLDKCKNKEFKLHQLLTH  228 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~~----------~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  228 (254)
                      +++++ |+++.+|.....          ...++. ..+.++.++.+.....+.  ..+.+.++++++.++.++......+
T Consensus       226 ~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  303 (329)
T cd08250         226 NLALK-GRLIVIGFISGYQSGTGPSPVKGATLPP-KLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTR  303 (329)
T ss_pred             HhccC-CeEEEEecccCCcccCcccccccccccH-HHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCcc
Confidence            99999 999999876431          012232 334588999887643221  1234677888999998665433445


Q ss_pred             EeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          229 HVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      .++++++++|++.+.++.. .|++++
T Consensus       304 ~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         304 FRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             ccCHHHHHHHHHHHHcCCCCceEEeC
Confidence            6899999999999987766 488874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.96  E-value=1.5e-26  Score=189.67  Aligned_cols=242  Identities=22%  Similarity=0.303  Sum_probs=199.6

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |.++..+++ ||+|+++...|+|++|+.+++..++++|+++++.+++.++.++.++|.++.....+.++++++|+|+ |+
T Consensus        73 g~~~~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~  151 (323)
T cd05276          73 GPGVTGWKV-GDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASG  151 (323)
T ss_pred             CCCCCCCCC-CCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcCh
Confidence            556667889 9999987656899999999999999999999999999999999999999877788999999999986 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                      +|++++++++..|+ +++++++++++.+.++.+|.+.+++...   .++...+.+...+.++|+++|++|+. .+...++
T Consensus       152 ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~  226 (323)
T cd05276         152 VGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYRT---EDFAEEVKEATGGRGVDVILDMVGGD-YLARNLR  226 (323)
T ss_pred             HHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCc---hhHHHHHHHHhCCCCeEEEEECCchH-HHHHHHH
Confidence            99999999999999 8999989989999998899888888776   67778888777767899999999987 5788999


Q ss_pred             HcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC-------CCCHHHHHHHHhCCCCCCCCceEEEeecc
Q 025336          161 TTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPILLDKCKNKEFKLHQLLTHHVKLE  233 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                      +++++ |+++.+|.........+...++.+++++.++.......       ...+.++++++.++++.  +..++.|+++
T Consensus       227 ~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  303 (323)
T cd05276         227 ALAPD-GRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIR--PVIDKVFPLE  303 (323)
T ss_pred             hhccC-CEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCcc--CCcceEEcHH
Confidence            99999 99999987654223445555556899999887543211       11245677888888854  4466789999


Q ss_pred             cHHHHHHHHcCCCe-eEEEE
Q 025336          234 EIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       234 ~~~~a~~~~~~~~~-~k~vi  252 (254)
                      +++++++.+.++.. .|+++
T Consensus       304 ~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         304 EAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             HHHHHHHHHHhCCCcceEeC
Confidence            99999999987665 47663

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08251 polyketide_synthase polyketide synthase

Probab=99.95  E-value=1.2e-26  Score=188.88  Aligned_cols=240  Identities=20%  Similarity=0.277  Sum_probs=193.9

Q ss_pred             CCCCcccccCCceeeeee--ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-
Q 025336            2 LDGTSRMSVRGQKLYHIF--SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-   78 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~--~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-   78 (254)
                      |+++.+|++ ||+|+++.  ..|+|++|+.++++.++++|+++++++++.++.++.+||+++ ...+++++++++|+|+ 
T Consensus        53 G~~v~~~~~-Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~~~  130 (303)
T cd08251          53 GPHVTRLAV-GDEVIAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQTAT  130 (303)
T ss_pred             CCCCCCCCC-CCEEEEecCCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEecCC
Confidence            667778899 99998764  348999999999999999999999999999999999999998 5889999999999965 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      |++|++++|+++.+|+ ++++++.++++.+.++++|++.+++...   .++...+.+.+++.++|.++|++++. .....
T Consensus       131 ~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~~~~-~~~~~  205 (303)
T cd08251         131 GGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE---EDFEEEIMRLTGGRGVDVVINTLSGE-AIQKG  205 (303)
T ss_pred             cHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHcCCCCceEEEECCcHH-HHHHH
Confidence            9999999999999999 8999989999999999999998998876   77888888888877999999999875 78899


Q ss_pred             HHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCC--C----CCCHHHHHHHHhCCCCCCCCceEEEee
Q 025336          159 LETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIK--T----KSDLPILLDKCKNKEFKLHQLLTHHVK  231 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (254)
                      +++++++ |+++.+|.... ....++...+. ++..+....+....  .    .+.+.+++++++++.++  +..++.++
T Consensus       206 ~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~  281 (303)
T cd08251         206 LNCLAPG-GRYVEIAMTALKSAPSVDLSVLS-NNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELR--PTVSRIFP  281 (303)
T ss_pred             HHHhccC-cEEEEEeccCCCccCccChhHhh-cCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCcc--CCCceEEc
Confidence            9999999 99999987543 22233433333 45554443321111  1    23466788889999854  44567899


Q ss_pred             cccHHHHHHHHcCCCe-eEEEE
Q 025336          232 LEEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       232 ~~~~~~a~~~~~~~~~-~k~vi  252 (254)
                      +++++++++.+.++.. +|+++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         282 FDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             HHHHHHHHHHHHhCCCcceEeC
Confidence            9999999999987766 47664

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.95  E-value=1.3e-26  Score=191.43  Aligned_cols=234  Identities=27%  Similarity=0.374  Sum_probs=188.9

Q ss_pred             CCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |.++..+++ ||+|++..                           ..|+|++|+.++...++++|+++++.+++.+++++
T Consensus        70 g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~  148 (334)
T PRK13771         70 GENVKGFKP-GDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVT  148 (334)
T ss_pred             CCCCccCCC-CCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchH
Confidence            556666888 99998653                           14899999999999999999999999999999999


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      .+||+++... .++++++|+|+|+ |++|++++|+++..|+ +++++++++++.+.++++ ++.+++++     ++.+.+
T Consensus       149 ~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~v  220 (334)
T PRK13771        149 GMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS-----KFSEEV  220 (334)
T ss_pred             HHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch-----hHHHHH
Confidence            9999998554 8899999999987 9999999999999999 899998999999999888 76666543     244455


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      ++.  + ++|+++||+|+. .+..++++++++ |+++.+|.... ..+.........+++++.+...   ...++++.++
T Consensus       221 ~~~--~-~~d~~ld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  292 (334)
T PRK13771        221 KKI--G-GADIVIETVGTP-TLEESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHIS---ATKRDVEEAL  292 (334)
T ss_pred             Hhc--C-CCcEEEEcCChH-HHHHHHHHHhcC-CEEEEEeccCCCCCcccCHHHHHhcccEEEEecC---CCHHHHHHHH
Confidence            554  3 799999999986 678999999999 99999997654 2212333333458888888642   2356688999


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++.++  +.+++.++++++++||+.+.++.. +|+++++
T Consensus       293 ~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        293 KLVAEGKIK--PVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             HHHHcCCCc--ceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence            999999854  446788999999999999987665 5888763

>smart00829 PKS_ER Enoylreductase

Probab=99.95  E-value=1.8e-26  Score=186.26  Aligned_cols=240  Identities=20%  Similarity=0.303  Sum_probs=194.7

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |+++..|++ ||+|++.. .|+|++|+.+|.+.++++|+++++++++.+++++.+++.++.....++++++|+|+|+ |.
T Consensus        39 G~~~~~~~~-Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~  116 (288)
T smart00829       39 GPGVTGLAV-GDRVMGLA-PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGG  116 (288)
T ss_pred             CCCCcCCCC-CCEEEEEc-CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcH
Confidence            566778899 99999774 4899999999999999999999999999999999999999877888999999999985 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC--ceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM--TDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      +|++++++++..|+ +|++++.++++.+.++++|+  +.++++.+   .++.+.+.+...++++|.++|++++. .+...
T Consensus       117 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~  191 (288)
T smart00829      117 VGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD---LSFADEILRATGGRGVDVVLNSLAGE-FLDAS  191 (288)
T ss_pred             HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC---ccHHHHHHHHhCCCCcEEEEeCCCHH-HHHHH
Confidence            99999999999999 89999889999999999998  77888776   67778888877777899999999965 78899


Q ss_pred             HHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCC-----CCCCHHHHHHHHhCCCCCCCCceEEEeec
Q 025336          159 LETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIK-----TKSDLPILLDKCKNKEFKLHQLLTHHVKL  232 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (254)
                      +++++++ |+++.+|.... ....++...+ .+++++.+..+....     ....+.++++++.+++++.  ...+.|++
T Consensus       192 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  267 (288)
T smart00829      192 LRCLAPG-GRFVEIGKRDIRDNSQLGMAPF-RRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRP--LPVTVFPI  267 (288)
T ss_pred             HHhccCC-cEEEEEcCcCCccccccchhhh-cCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccC--cCceEEcH
Confidence            9999999 99999987643 2233343333 367777776532211     1123667888888888554  34567999


Q ss_pred             ccHHHHHHHHcCCCe-eEEEE
Q 025336          233 EEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       233 ~~~~~a~~~~~~~~~-~k~vi  252 (254)
                      ++++++++.+..+.. .|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      268 SDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             HHHHHHHHHHhcCCCcceEeC
Confidence            999999999987765 47653

Enoylreductase in Polyketide synthases.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.95  E-value=4e-26  Score=187.40  Aligned_cols=243  Identities=21%  Similarity=0.296  Sum_probs=198.2

Q ss_pred             CCCCcccccCCceeeeee-----ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            2 LDGTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      |+++..|++ ||+|+...     ..|++++|+.+++..++++|+++++++++.+++++.+||+++....++.++++++|+
T Consensus        73 g~~~~~~~~-Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~  151 (325)
T cd08253          73 GEGVDGLKV-GDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVH  151 (325)
T ss_pred             CCCCCCCCC-CCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            567778999 99998764     258999999999999999999999999999999999999998777899999999999


Q ss_pred             cC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHH
Q 025336           77 GL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  155 (254)
Q Consensus        77 G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  155 (254)
                      |+ |++|++++++++..|+ +|+++++++++.+.++++|++.+++...   .++...+.+...++++|+++||+++. ..
T Consensus       152 g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~  226 (325)
T cd08253         152 GGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRA---EDLADRILAATAGQGVDVIIEVLANV-NL  226 (325)
T ss_pred             cCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---cCHHHHHHHHcCCCceEEEEECCchH-HH
Confidence            86 9999999999999999 8999999999999999999988888776   67777888777666899999999987 67


Q ss_pred             HHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEeec
Q 025336          156 SEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHVKL  232 (254)
Q Consensus       156 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (254)
                      ...+++++++ |+++.++.... ..+++...++.++.++.+........   ...+..+.+++.++.++  +..++.+++
T Consensus       227 ~~~~~~l~~~-g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~  302 (325)
T cd08253         227 AKDLDVLAPG-GRIVVYGSGGL-RGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALR--PVIAREYPL  302 (325)
T ss_pred             HHHHHhhCCC-CEEEEEeecCC-cCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCcc--CccccEEcH
Confidence            8889999999 99999987542 33444445455788887765332110   12345566677788754  345678999


Q ss_pred             ccHHHHHHHHcCCCe-eEEEEeC
Q 025336          233 EEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       233 ~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++++.+.++.. +|+++++
T Consensus       303 ~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         303 EEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             HHHHHHHHHHHcCCCcceEEEeC
Confidence            999999999987666 5988864

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.95  E-value=2.8e-26  Score=184.71  Aligned_cols=231  Identities=26%  Similarity=0.395  Sum_probs=183.4

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCH
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGT   80 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~   80 (254)
                      +|+++.+|++ ||+|+++   ++|++|+++|...++++|+++++++++.+ .++++||+++ ...++++++++||+|+|+
T Consensus        35 vG~~v~~~~~-Gd~V~~~---~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~  108 (277)
T cd08255          35 VGSGVTGFKP-GDRVFCF---GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGL  108 (277)
T ss_pred             eCCCCCCCCC-CCEEEec---CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCH
Confidence            3667778999 9999976   35999999999999999999999999888 8899999997 478999999999998899


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC-CceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG-MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      +|++++++|+.+|+.+|++++.++++.+.++++| ++.+++..+           ....+.++|.+|||++....+...+
T Consensus       109 vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~d~vl~~~~~~~~~~~~~  177 (277)
T cd08255         109 VGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTA-----------DEIGGRGADVVIEASGSPSALETAL  177 (277)
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccch-----------hhhcCCCCCEEEEccCChHHHHHHH
Confidence            9999999999999933999999999999999999 555554331           1124458999999998766889999


Q ss_pred             HHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC---------CCCCHHHHHHHHhCCCCCCCCceEEEe
Q 025336          160 ETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK---------TKSDLPILLDKCKNKEFKLHQLLTHHV  230 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                      ++++++ |+++.+|..... .......+..+.+++.+.......         ..+.+++++++++++.++  +.+.+.+
T Consensus       178 ~~l~~~-g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~  253 (277)
T cd08255         178 RLLRDR-GRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLE--ALITHRV  253 (277)
T ss_pred             HHhcCC-cEEEEEeccCCC-ccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCcc--ccccCcc
Confidence            999999 999999876543 111223344466677776543221         125688999999999844  4456789


Q ss_pred             ecccHHHHHHHHcCC--CeeEEEE
Q 025336          231 KLEEIDKAIQLLKQP--DCVKVLI  252 (254)
Q Consensus       231 ~~~~~~~a~~~~~~~--~~~k~vi  252 (254)
                      ++++++++|+.+.++  ..+|+++
T Consensus       254 ~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         254 PFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             CHHHHHHHHHHHHcCCccceeeeC
Confidence            999999999999877  3368764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=2.7e-26  Score=187.25  Aligned_cols=206  Identities=21%  Similarity=0.353  Sum_probs=174.3

Q ss_pred             CCCCcccccCCceeeeee----------------------------ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |+++..|++ ||+|+...                            ..|+|++|+++++..++++|+++++++++ ++.+
T Consensus        71 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~  148 (306)
T cd08258          71 GPDVEGWKV-GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEP  148 (306)
T ss_pred             CCCcCcCCC-CCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhch
Confidence            667778999 99998643                            14899999999999999999999999887 6678


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC--CcccHHHHHhcCCceEeCCCCCCCchHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK--NPWKKEKGEAFGMTDFINPDDEPNKSISE  131 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~--~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  131 (254)
                      ++++|+++....+++++++|||.|+|.+|++++|+++.+|+ +|+++..  ++++.+.++++|++.+ +++.   .++.+
T Consensus       149 ~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~---~~~~~  223 (306)
T cd08258         149 LAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-NGGE---EDLAE  223 (306)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-CCCc---CCHHH
Confidence            88999998888899999999998889999999999999999 7877633  4457778889999888 7776   78888


Q ss_pred             HHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHH
Q 025336          132 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPIL  211 (254)
Q Consensus       132 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~  211 (254)
                      .+.+...++++|+++||+|+...+...+++++++ |+++.+|........++...++++++++.|++.++   .++++++
T Consensus       224 ~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~  299 (306)
T cd08258         224 LVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGPLAASIDVERIIQKELSVIGSRSST---PASWETA  299 (306)
T ss_pred             HHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCc---hHhHHHH
Confidence            8888777778999999998766888999999999 99999998754345566777778999999998653   5779999


Q ss_pred             HHHHhCC
Q 025336          212 LDKCKNK  218 (254)
Q Consensus       212 ~~~~~~~  218 (254)
                      ++++++|
T Consensus       300 ~~~~~~~  306 (306)
T cd08258         300 LRLLASG  306 (306)
T ss_pred             HHHHhcC
Confidence            9998875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=7.5e-26  Score=187.20  Aligned_cols=241  Identities=21%  Similarity=0.307  Sum_probs=199.4

Q ss_pred             CCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |.++..|++ ||+|+...                           ..|+|++|+++++..++++|+.+++++++.++.++
T Consensus        73 G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~  151 (342)
T cd08266          73 GPGVTNVKP-GQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTF  151 (342)
T ss_pred             CCCCCCCCC-CCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHH
Confidence            566667888 99997641                           24789999999999999999999999999999999


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      .+|++++....++.++++++|+|+ +.+|++++++++..|+ +++.+++++++.+.++.++.+.+++..+   .+....+
T Consensus       152 ~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  227 (342)
T cd08266         152 LTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDYRK---EDFVREV  227 (342)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEecCC---hHHHHHH
Confidence            999999878888999999999987 7999999999999999 8999989988999888888877787765   6777777


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      .+...+.++|.++|+.|.. .+...+++++++ |+++.++.........+....+.++.++.+.....   ...+.++++
T Consensus       228 ~~~~~~~~~d~~i~~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  302 (342)
T cd08266         228 RELTGKRGVDVVVEHVGAA-TWEKSLKSLARG-GRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGT---KAELDEALR  302 (342)
T ss_pred             HHHhCCCCCcEEEECCcHH-HHHHHHHHhhcC-CEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCC---HHHHHHHHH
Confidence            7776666899999999986 688999999999 99999987655223444444455888888876432   356888899


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++.+.  +.+++.|++++++++++.+.++.. .|+++++
T Consensus       303 ~l~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         303 LVFRGKLK--PVIDSVFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             HHHcCCcc--cceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            99999844  457788999999999999887665 5998864

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=6.7e-26  Score=186.98  Aligned_cols=234  Identities=26%  Similarity=0.409  Sum_probs=189.4

Q ss_pred             CCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..+++ ||+|+++.                           ..|+|++|++++...++++|+++++++++.+++++
T Consensus        70 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~  148 (332)
T cd08259          70 GEGVERFKP-GDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVV  148 (332)
T ss_pred             CCCCccCCC-CCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHH
Confidence            566777889 99998764                           14899999999999999999999999999999999


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      .+||+++.. ..+++++++||+|+ |++|++++++++..|. +|+++++++++.+.++++|.+.+++..    . +.+.+
T Consensus       149 ~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~  221 (332)
T cd08259         149 GTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS----K-FSEDV  221 (332)
T ss_pred             HHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH----H-HHHHH
Confidence            999999865 88999999999987 9999999999999999 899988888888989888987777543    2 55555


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      .+..   ++|+++|++|.. ....++++++++ |+++.+|........++......++..+.++..   .....++++++
T Consensus       222 ~~~~---~~d~v~~~~g~~-~~~~~~~~~~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  293 (332)
T cd08259         222 KKLG---GADVVIELVGSP-TIEESLRSLNKG-GRLVLIGNVTPDPAPLRPGLLILKEIRIIGSIS---ATKADVEEALK  293 (332)
T ss_pred             Hhcc---CCCEEEECCChH-HHHHHHHHhhcC-CEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecC---CCHHHHHHHHH
Confidence            5543   799999999987 578999999999 999999876542222233333347777777642   22456888999


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      +++++.++  +.+++.+++++++++|+.+.++.. +|++++
T Consensus       294 ~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         294 LVKEGKIK--PVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             HHHcCCCc--cceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence            99999854  457788999999999999988766 588764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.95  E-value=8.8e-26  Score=186.68  Aligned_cols=241  Identities=18%  Similarity=0.195  Sum_probs=191.8

Q ss_pred             CCCCcccccCCceeeeee---ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCC-----CCEE
Q 025336            2 LDGTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEK-----GSSV   73 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~v   73 (254)
                      |+++..|++ ||+|+...   ..|+|++|+.++...++++|+++++++++.++..+.|||.++.....+.+     +++|
T Consensus        75 G~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~v  153 (336)
T cd08252          75 GSEVTLFKV-GDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTL  153 (336)
T ss_pred             CCCCCCCCC-CCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEE
Confidence            566777899 99998652   35899999999999999999999999999999999999999877788877     9999


Q ss_pred             EEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           74 AVLGL-GTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        74 lI~G~-g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|+|+ |++|++++|+++.+| + +|++++.++++.++++++|++.++++.    .++...+... .++++|+++||+++
T Consensus       154 lV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~i~~~-~~~~~d~vl~~~~~  227 (336)
T cd08252         154 LIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKELGADHVINHH----QDLAEQLEAL-GIEPVDYIFCLTDT  227 (336)
T ss_pred             EEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCC----ccHHHHHHhh-CCCCCCEEEEccCc
Confidence            99985 999999999999999 7 899999999999999999998888765    2455556544 33589999999997


Q ss_pred             hhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC--C-------CCCHHHHHHHHhCCCCCC
Q 025336          152 PSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK--T-------KSDLPILLDKCKNKEFKL  222 (254)
Q Consensus       152 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~--~-------~~~~~~~~~~~~~~~~~~  222 (254)
                      ...+..++++++++ |+++.+|...   ..++...+..++.++.+.......  .       ...+.++++++.++.++.
T Consensus       228 ~~~~~~~~~~l~~~-g~~v~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  303 (336)
T cd08252         228 DQHWDAMAELIAPQ-GHICLIVDPQ---EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKT  303 (336)
T ss_pred             HHHHHHHHHHhcCC-CEEEEecCCC---CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEec
Confidence            65889999999999 9999998653   233344444578888876543211  1       123677889999998664


Q ss_pred             CCc-eEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          223 HQL-LTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       223 ~~~-~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      ... ....+++++++++++.+.++.. .|++++
T Consensus       304 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         304 TLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             ceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            211 1234799999999999988776 488764

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.95  E-value=9.2e-26  Score=185.32  Aligned_cols=244  Identities=22%  Similarity=0.320  Sum_probs=200.7

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |+.+..+++ ||+|+++...|+|++|+.++...++++|+++++.+++.++.++.++|+++.....++++++++|+|+ |+
T Consensus        73 g~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~  151 (325)
T TIGR02824        73 GEGVSRWKV-GDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASG  151 (325)
T ss_pred             CCCCCCCCC-CCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcch
Confidence            456667889 9999987555899999999999999999999999999999999999999878889999999999986 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                      +|++++++++..|+ +|+++.+++++.+.++++|.+.+++...   .++...+.+...++++|+++|++++. .+...++
T Consensus       152 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~  226 (325)
T TIGR02824       152 IGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINYRE---EDFVEVVKAETGGKGVDVILDIVGGS-YLNRNIK  226 (325)
T ss_pred             HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCc---hhHHHHHHHHcCCCCeEEEEECCchH-HHHHHHH
Confidence            99999999999999 8999988988888888899888887765   67777788777766899999999986 6788999


Q ss_pred             HcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC-------CCCHHHHHHHHhCCCCCCCCceEEEeecc
Q 025336          161 TTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPILLDKCKNKEFKLHQLLTHHVKLE  233 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                      +++++ |+++.+|........++...++.+++++.+........       ...+.+++++++++.++  +..++.++++
T Consensus       227 ~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~  303 (325)
T TIGR02824       227 ALALD-GRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVR--PVIDKVFPLE  303 (325)
T ss_pred             hhccC-cEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCccc--CccccEEeHH
Confidence            99999 99999987654122555556656999999987543211       11235567788888854  4466789999


Q ss_pred             cHHHHHHHHcCCCe-eEEEEeC
Q 025336          234 EIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       234 ~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++++.+.++.. .|+++++
T Consensus       304 ~~~~~~~~~~~~~~~~~~v~~~  325 (325)
T TIGR02824       304 DAAQAHALMESGDHIGKIVLTV  325 (325)
T ss_pred             HHHHHHHHHHhCCCcceEEEeC
Confidence            99999999887766 4888864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.95  E-value=7e-26  Score=186.86  Aligned_cols=233  Identities=24%  Similarity=0.379  Sum_probs=188.2

Q ss_pred             CCCCcccccCCceeee----------------------------eeccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYH----------------------------IFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~----------------------------~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |+++..|++ ||+|+.                            +...|+|++|+.+|+..++++|+++++++++.++..
T Consensus        69 g~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~  147 (330)
T cd08245          69 GAGVEGRKV-GDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCA  147 (330)
T ss_pred             CCCCccccc-CCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhh
Confidence            556677888 999972                            212489999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.|||+++. ..+++++++|||+|+|++|++++++++..|. +|+++++++++.++++++|++.+++...   .+.... 
T Consensus       148 ~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~-  221 (330)
T cd08245         148 GITVYSALR-DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA---ELDEQA-  221 (330)
T ss_pred             HHHHHHHHH-hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC---cchHHh-
Confidence            999999984 4789999999999988899999999999999 8999999999999999999988887654   333222 


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                         .. .++|+++|+++....+..++++++++ |+++.++.............+..++.++.+...+.   ...++.+++
T Consensus       222 ---~~-~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  293 (330)
T cd08245         222 ---AA-GGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGG---RADLQEALD  293 (330)
T ss_pred             ---cc-CCCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCCCccccchHHHHhCCCEEEEeccCC---HHHHHHHHH
Confidence               22 37999999988766889999999999 99999987543222233445666888888876432   356788889


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEE
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi  252 (254)
                      ++.++.+..   ..+.+++++++++|+.+.++.. .|+|+
T Consensus       294 ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         294 FAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             HHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence            999998653   3468999999999999987776 47664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.95  E-value=5e-26  Score=183.88  Aligned_cols=240  Identities=20%  Similarity=0.255  Sum_probs=194.7

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |+++.+|++ ||+|+++. .|+|++|+.++...++++|+.+++.+++.+++++.+++.++.....+++|++|+|+|+ |+
T Consensus        43 g~~~~~~~~-Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~  120 (293)
T cd05195          43 GSGVTGLKV-GDRVMGLA-PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGG  120 (293)
T ss_pred             cCCccCCCC-CCEEEEEe-cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCH
Confidence            566777899 99999775 4899999999999999999999999999999999999999877788999999999975 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC--CceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG--MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      +|++++|+++..|+ ++++++.++++.+.++..+  ++.++++.+   .++.+.+.+.+.+.++|.++|++++. .+...
T Consensus       121 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~  195 (293)
T cd05195         121 VGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD---LSFADGILRATGGRGVDVVLNSLSGE-LLRAS  195 (293)
T ss_pred             HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc---hhHHHHHHHHhCCCCceEEEeCCCch-HHHHH
Confidence            99999999999999 8999988888999998888  677888776   67888888888777899999999987 78999


Q ss_pred             HHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCC--C----CCCHHHHHHHHhCCCCCCCCceEEEee
Q 025336          159 LETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIK--T----KSDLPILLDKCKNKEFKLHQLLTHHVK  231 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (254)
                      +++++++ |+++.+|.... ....+....+. ++..+.+..+....  .    ...+.++++++.+++++  +..++.++
T Consensus       196 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  271 (293)
T cd05195         196 WRCLAPF-GRFVEIGKRDILSNSKLGMRPFL-RNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK--PLPPTVVP  271 (293)
T ss_pred             HHhcccC-ceEEEeeccccccCCccchhhhc-cCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc--cCCCeeec
Confidence            9999999 99999987654 21223333332 56666665432211  1    22467788888899854  55567799


Q ss_pred             cccHHHHHHHHcCCCe-eEEEE
Q 025336          232 LEEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       232 ~~~~~~a~~~~~~~~~-~k~vi  252 (254)
                      +++++++++.+.++.. .|+++
T Consensus       272 ~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         272 SASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             hhhHHHHHHHHhcCCCCceecC
Confidence            9999999999987766 47663

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.95  E-value=4.4e-26  Score=187.94  Aligned_cols=233  Identities=23%  Similarity=0.268  Sum_probs=188.5

Q ss_pred             ccccCCceeeeeeccCcceeeEEecC-CceEEcCCCCC--cccccc-ccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHH
Q 025336            7 RMSVRGQKLYHIFSCSTWSEYMVIDA-NYVVRVDPSID--LSHASF-LSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTV   81 (254)
Q Consensus         7 ~~~~~Gd~v~~~~~~g~~a~~~~v~~-~~v~~~p~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~   81 (254)
                      .|++ ||+|+++   ++|++|+.++. ..++++|++++  +.+++. +++++.|||+++.....+.++++|||+|+ |++
T Consensus        83 ~~~~-Gd~V~~~---~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~i  158 (329)
T cd05288          83 DFKV-GDLVSGF---LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAV  158 (329)
T ss_pred             CCCC-CCEEecc---cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchH
Confidence            5788 9999865   47999999999 99999999985  445545 88999999999877788999999999985 999


Q ss_pred             HHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH
Q 025336           82 GLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus        82 G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                      |++++|+++..|+ +|+++++++++.+.+++ +|++.++++++   .++...+.+..+ +++|+++||+|+. .+..+++
T Consensus       159 g~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~v~~~~~-~~~d~vi~~~g~~-~~~~~~~  232 (329)
T cd05288         159 GSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT---PDLAEALKEAAP-DGIDVYFDNVGGE-ILDAALT  232 (329)
T ss_pred             HHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCCceEEecCC---hhHHHHHHHhcc-CCceEEEEcchHH-HHHHHHH
Confidence            9999999999999 89999899999999988 99999998886   677778887775 5899999999986 7899999


Q ss_pred             HcccCCcEEEEEccCCC-cee----eccHHHHHhCCCEEEeeecCCCCC--CCCHHHHHHHHhCCCCCCCCceEEEeecc
Q 025336          161 TTKVGKGKVIVIGVGVD-TMV----PLNVIALACGGRTLKGTTFGGIKT--KSDLPILLDKCKNKEFKLHQLLTHHVKLE  233 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~-~~~----~~~~~~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                      +++++ |+++.+|.... ...    .++...++.++.++.+........  .+.+.++++++.++.++..+  ...++++
T Consensus       233 ~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~  309 (329)
T cd05288         233 LLNKG-GRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--DVVEGLE  309 (329)
T ss_pred             hcCCC-ceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--cccccHH
Confidence            99999 99999987654 111    123444556889998876443211  23467788999999876553  3458999


Q ss_pred             cHHHHHHHHcCCCe-eEEEE
Q 025336          234 EIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       234 ~~~~a~~~~~~~~~-~k~vi  252 (254)
                      +++++++.+.+++. .|+++
T Consensus       310 ~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         310 NAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             HHHHHHHHHhcCCCccceeC
Confidence            99999999987765 47664

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.95  E-value=1.4e-25  Score=184.94  Aligned_cols=227  Identities=24%  Similarity=0.303  Sum_probs=184.6

Q ss_pred             CCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |.++..|++ ||+|+..                            ...|+|++|+.++...++++|+++++.+++.++++
T Consensus        74 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~  152 (329)
T cd08298          74 GPGVTRFSV-GDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCA  152 (329)
T ss_pred             CCCCCCCcC-CCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhh
Confidence            556667888 9999641                            12488999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.|||+++ ...++++++++||+|+|++|++++++++..|. +|++++.++++.+.++++|++.+++.+.   .      
T Consensus       153 ~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~------  221 (329)
T cd08298         153 GIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGDSDD---L------  221 (329)
T ss_pred             hHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEeccCc---c------
Confidence            99999998 88999999999999999999999999999999 8999999999999999999988887654   1      


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                          .++++|.++++.+....++.++++++++ |+++.+|........+++.. +.++..+.++...   ....+..+++
T Consensus       222 ----~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~---~~~~~~~~~~  292 (329)
T cd08298         222 ----PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANL---TRQDGEEFLK  292 (329)
T ss_pred             ----CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCCCCCCccchhh-hhCceEEEEecCC---CHHHHHHHHH
Confidence                2347999999877666889999999999 99999885432222333333 3367777776522   2356888899


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEE
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi  252 (254)
                      +++++.++.  . .+.|+++++++|++.+.+++. +|+|+
T Consensus       293 l~~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         293 LAAEIPIKP--E-VETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             HHHcCCCCc--e-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence            999998654  3 578999999999999988766 47764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.94  E-value=2.8e-25  Score=184.90  Aligned_cols=243  Identities=19%  Similarity=0.212  Sum_probs=180.0

Q ss_pred             CCCCc-ccccCCceeeeee-----ccCcceeeEEecCC----ceEEcCCCCCccccccccchhhhhhHHHHHhc-CCCCC
Q 025336            2 LDGTS-RMSVRGQKLYHIF-----SCSTWSEYMVIDAN----YVVRVDPSIDLSHASFLSCGFTTGFGAAWKEA-EVEKG   70 (254)
Q Consensus         2 g~~~~-~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~----~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~~   70 (254)
                      |.++. +|++ ||+|.++.     +.|+|++|+++++.    .++++|+++++++++.++.++.|||+++.... ++++|
T Consensus        74 G~~v~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g  152 (352)
T cd08247          74 GSNVASEWKV-GDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPD  152 (352)
T ss_pred             CcccccCCCC-CCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCC
Confidence            66776 8999 99998764     25899999999987    78999999999999999999999999986666 79999


Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcCCceEeCCCCCCCch---HHHHH-HHhhCCCCccE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS---ISELV-KGITHGMGVDY  144 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~~~~i-~~~~~~~~~d~  144 (254)
                      ++|+|+|+ |.+|++++|+|+.+|. .+++++ .++++.+.++++|++.++++++   .+   +...+ +..++++++|.
T Consensus       153 ~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~-~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~d~  228 (352)
T cd08247         153 SKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGT-CSSRSAELNKKLGADHFIDYDA---HSGVKLLKPVLENVKGQGKFDL  228 (352)
T ss_pred             CeEEEECCCchHHHHHHHHHHhcCCcceEEEE-eChhHHHHHHHhCCCEEEecCC---CcccchHHHHHHhhcCCCCceE
Confidence            99999987 7999999999998854 256666 4556667888899998888765   44   44444 34443568999


Q ss_pred             EEEcCCChhHHHHHHHHcc---cCCcEEEEEccCCCceee-----------ccHHHHH----hCCCEEEeeecCCCCCCC
Q 025336          145 CFECTGVPSLLSEALETTK---VGKGKVIVIGVGVDTMVP-----------LNVIALA----CGGRTLKGTTFGGIKTKS  206 (254)
Q Consensus       145 v~d~~g~~~~~~~~~~~l~---~~~G~~v~~g~~~~~~~~-----------~~~~~~~----~~~~~i~g~~~~~~~~~~  206 (254)
                      ++||+|+......++++++   ++ |+++.++........           .....+.    .+...+......  ...+
T Consensus       229 vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  305 (352)
T cd08247         229 ILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLD--PNAD  305 (352)
T ss_pred             EEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEec--CCHH
Confidence            9999998557889999999   99 999987532211111           1111111    122222221111  1124


Q ss_pred             CHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          207 DLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      .++++++++.++.++  +.+++.+++++++++|+.+.++.. +|+++++
T Consensus       306 ~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~  352 (352)
T cd08247         306 WIEKCAELIADGKVK--PPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV  352 (352)
T ss_pred             HHHHHHHHHhCCCeE--eeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence            577888999999854  446678999999999999987766 5998864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=2e-25  Score=183.53  Aligned_cols=238  Identities=24%  Similarity=0.291  Sum_probs=193.8

Q ss_pred             CCCCcccccCCceeeeee-----ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            2 LDGTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      |+++..|++ ||+|+++.     ..|+|++|+.++...++++|+.+++.+++.++..+.+||+++....+++++++++|+
T Consensus        73 G~~~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~  151 (326)
T cd08272          73 GEGVTRFRV-GDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIH  151 (326)
T ss_pred             CCCCCCCCC-CCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            566677899 99999764     258999999999999999999999999999999999999998788999999999999


Q ss_pred             cC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHH
Q 025336           77 GL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  155 (254)
Q Consensus        77 G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  155 (254)
                      |+ |++|++++++++..|+ +|++++.+ ++.++++++|.+.+++...   . +.+.+.+.+++.++|+++||+++. .+
T Consensus       152 g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~-~~~~~~~~~~~~~~d~v~~~~~~~-~~  224 (326)
T cd08272         152 GGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYYRE---T-VVEYVAEHTGGRGFDVVFDTVGGE-TL  224 (326)
T ss_pred             cCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEecch---h-HHHHHHHhcCCCCCcEEEECCChH-HH
Confidence            85 9999999999999999 89998888 8899999999988888765   5 777888888777899999999986 67


Q ss_pred             HHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCC--CC------CCCCHHHHHHHHhCCCCCCCCceE
Q 025336          156 SEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG--IK------TKSDLPILLDKCKNKEFKLHQLLT  227 (254)
Q Consensus       156 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
                      ...+++++++ |+++.++...  ..++.  ....+++++.+.....  ..      ....+..+++++.++.++  +.++
T Consensus       225 ~~~~~~l~~~-g~~v~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~  297 (326)
T cd08272         225 DASFEAVALY-GRVVSILGGA--THDLA--PLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLR--PLLD  297 (326)
T ss_pred             HHHHHHhccC-CEEEEEecCC--ccchh--hHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCcc--cccc
Confidence            8899999999 9999998653  12222  2224788887765322  10      123467788888888854  3333


Q ss_pred             -EEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          228 -HHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       228 -~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                       +.+++++++++|+.+.++.. .|+++++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         298 PRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             cceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence             78999999999999877665 5988864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.94  E-value=4.1e-25  Score=181.23  Aligned_cols=243  Identities=25%  Similarity=0.392  Sum_probs=198.9

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |+++..+++ ||+|+++...|++++|+.++...++++|+++++.+++.++.++.+|+.++.....++++++|+|+|+ |+
T Consensus        73 g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~  151 (323)
T cd08241          73 GEGVTGFKV-GDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGG  151 (323)
T ss_pred             CCCCCCCCC-CCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCch
Confidence            556667889 9999987645899999999999999999999999988888999999999877788999999999997 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                      +|++++++++..|+ +|++++.++++.++++++|++.+++...   .++.+.+.+.+.+.++|.++||+|+. .+..+++
T Consensus       152 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~g~~-~~~~~~~  226 (323)
T cd08241         152 VGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRD---PDLRERVKALTGGRGVDVVYDPVGGD-VFEASLR  226 (323)
T ss_pred             HHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCC---ccHHHHHHHHcCCCCcEEEEECccHH-HHHHHHH
Confidence            99999999999999 8999989999999999999888887776   67888888887777899999999985 7788999


Q ss_pred             HcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC------CCCHHHHHHHHhCCCCCCCCceEEEeeccc
Q 025336          161 TTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT------KSDLPILLDKCKNKEFKLHQLLTHHVKLEE  234 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (254)
                      +++++ |+++.+|........+.......+++++.+.....+..      ...+.++++++.++.+.  +..++.|++++
T Consensus       227 ~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  303 (323)
T cd08241         227 SLAWG-GRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIR--PHVSAVFPLEQ  303 (323)
T ss_pred             hhccC-CEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcc--cccceEEcHHH
Confidence            99999 99999987543111233333445889998876543321      13466788889898854  44667899999


Q ss_pred             HHHHHHHHcCCCe-eEEEEe
Q 025336          235 IDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       235 ~~~a~~~~~~~~~-~k~vi~  253 (254)
                      +.++++.+.++.. .|++++
T Consensus       304 ~~~~~~~~~~~~~~~~vvv~  323 (323)
T cd08241         304 AAEALRALADRKATGKVVLT  323 (323)
T ss_pred             HHHHHHHHHhCCCCCcEEeC
Confidence            9999998877665 487764

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.94  E-value=5.1e-25  Score=181.27  Aligned_cols=238  Identities=17%  Similarity=0.225  Sum_probs=185.0

Q ss_pred             CCcccccCCceeeeee------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHH--HhcCCC-CCCEEE
Q 025336            4 GTSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW--KEAEVE-KGSSVA   74 (254)
Q Consensus         4 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~-~~~~vl   74 (254)
                      ++..+++ ||+|+...      ..|+|++|++++...++++|+++++++++.++..+++++.++.  ...+.. ++++|+
T Consensus        73 ~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vl  151 (324)
T cd08288          73 SSPRFKP-GDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVL  151 (324)
T ss_pred             CCCCCCC-CCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEE
Confidence            4456788 99998752      2589999999999999999999999999999999999987753  123445 578999


Q ss_pred             EEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChh
Q 025336           75 VLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  153 (254)
Q Consensus        75 I~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  153 (254)
                      |+|+ |++|++++|+|+.+|+ +|++++.++++.+.++++|++.++++++   .  ...+..+..+ ++|.++|+++++ 
T Consensus       152 I~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~--~~~~~~~~~~-~~~~~~d~~~~~-  223 (324)
T cd08288         152 VTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEIIDRAE---L--SEPGRPLQKE-RWAGAVDTVGGH-  223 (324)
T ss_pred             EECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEEEEcch---h--hHhhhhhccC-cccEEEECCcHH-
Confidence            9987 9999999999999999 8999989999999999999999988764   2  2245555544 689999999985 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEe
Q 025336          154 LLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHV  230 (254)
Q Consensus       154 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                      .+...+..++.+ |+++.+|.......+.+...++.++.++.+........   .+.+..+.+++.++.++  + +.+.+
T Consensus       224 ~~~~~~~~~~~~-g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-i~~~~  299 (324)
T cd08288         224 TLANVLAQTRYG-GAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLE--A-LTREI  299 (324)
T ss_pred             HHHHHHHHhcCC-CEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCcc--c-cceee
Confidence            677888899998 99999987533222344445546899999875332211   22355667777788753  3 35789


Q ss_pred             ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          231 KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       231 ~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++++|+.+.+++. .|+++++
T Consensus       300 ~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         300 PLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             cHHHHHHHHHHHhcCCccCeEEEeC
Confidence            99999999999988777 4988874

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=4.7e-25  Score=181.36  Aligned_cols=244  Identities=24%  Similarity=0.366  Sum_probs=196.4

Q ss_pred             CCCCcccccCCceeeeee-----ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            2 LDGTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      |+++..|++ ||+|+++.     ..|++++|+.++.+.++++|+++++++++.++.++.++|.++.....+.++++++|+
T Consensus        73 G~~~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~  151 (328)
T cd08268          73 GAGVTGFAV-GDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLIT  151 (328)
T ss_pred             CCCCCcCCC-CCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            667778899 99998763     248999999999999999999999999999999999999998778889999999999


Q ss_pred             cC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHH
Q 025336           77 GL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  155 (254)
Q Consensus        77 G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  155 (254)
                      |+ |++|++++++++..|+ +++.++.+.++.+.++++|.+.+++.+.   .+....+.+...+.++|+++|+.++. ..
T Consensus       152 g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~  226 (328)
T cd08268         152 AASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTDE---EDLVAEVLRITGGKGVDVVFDPVGGP-QF  226 (328)
T ss_pred             cCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHhCCCCceEEEECCchH-hH
Confidence            87 9999999999999999 8999989999999998899888888776   67777787777766899999999985 77


Q ss_pred             HHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC-CCC----CHHHHHHHHhCCCCCCCCceEEEe
Q 025336          156 SEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK-TKS----DLPILLDKCKNKEFKLHQLLTHHV  230 (254)
Q Consensus       156 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                      ..++++++++ |+++.+|........++....+.++..+.+....... ...    .+..+.+++.++.+.  +..+..|
T Consensus       227 ~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  303 (328)
T cd08268         227 AKLADALAPG-GTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALK--PVVDRVF  303 (328)
T ss_pred             HHHHHhhccC-CEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCc--CCcccEE
Confidence            8999999999 9999998754322334444345588888887644211 112    234455566677744  3355679


Q ss_pred             ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          231 KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       231 ~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++++++.+.++.. .|+++++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~vv~~~  328 (328)
T cd08268         304 PFDDIVEAHRYLESGQQIGKIVVTP  328 (328)
T ss_pred             cHHHHHHHHHHHHcCCCCceEEEeC
Confidence            99999999999987766 4888864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=2.7e-25  Score=182.99  Aligned_cols=226  Identities=25%  Similarity=0.346  Sum_probs=182.4

Q ss_pred             CCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccchh
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGF   54 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~   54 (254)
                      |+++..|++ ||+|+...                           ..|+|++|+++++..++++|+++++++++.++.++
T Consensus        70 G~~v~~~~~-Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~  148 (325)
T cd08264          70 GDHVKGVKK-GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAA  148 (325)
T ss_pred             CCCCCCCCC-CCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhh
Confidence            667777889 99997541                           24899999999999999999999999999999999


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      .+||+++. ..+++++++|+|+|+ |++|++++++|+.+|. +|++++    +.+.++++|++++++.++     ..+.+
T Consensus       149 ~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~~-----~~~~l  217 (325)
T cd08264         149 LTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYDE-----VEEKV  217 (325)
T ss_pred             HHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecchH-----HHHHH
Confidence            99999985 588999999999997 9999999999999999 788875    236778899988887653     24556


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD  213 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  213 (254)
                      .+++  +++|+++|++|+. .+...+++++++ |+++.+|........++...+..++.++.+...+   ..+.++++++
T Consensus       218 ~~~~--~~~d~vl~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  290 (325)
T cd08264         218 KEIT--KMADVVINSLGSS-FWDLSLSVLGRG-GRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGG---TRKELLELVK  290 (325)
T ss_pred             HHHh--CCCCEEEECCCHH-HHHHHHHhhccC-CEEEEEecCCCCCCccCHHHHhhcCcEEEEccCC---CHHHHHHHHH
Confidence            6666  4899999999985 889999999999 9999998753323556666666688888887533   2456888898


Q ss_pred             HHhCCCCCCCCceEEEeecccHHHHHHHHcCCCee-EE
Q 025336          214 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCV-KV  250 (254)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~  250 (254)
                      ++...+    ..+.+.|+++++++||+.+.++... |+
T Consensus       291 l~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~kv  324 (325)
T cd08264         291 IAKDLK----VKVWKTFKLEEAKEALKELFSKERDGRI  324 (325)
T ss_pred             HHHcCC----ceeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence            885433    2356789999999999998876553 53

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=6.3e-25  Score=175.94  Aligned_cols=203  Identities=27%  Similarity=0.399  Sum_probs=168.4

Q ss_pred             CCCCcccccCCceeeeee-----------------------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhh
Q 025336            2 LDGTSRMSVRGQKLYHIF-----------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGF   58 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~-----------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~   58 (254)
                      |.++..|++ ||+|++..                       ..|+|++|+.+|+..++++|+++++++++.++.++.+||
T Consensus        45 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~  123 (271)
T cd05188          45 GPGVTGVKV-GDRVVVLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAY  123 (271)
T ss_pred             CCCCCcCCC-CCEEEEcCCCCCCCCHHHHhhCCCCCEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHH
Confidence            566778999 99998754                       258999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           59 GAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        59 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      +++.....++++++|||+|+|++|++++++++..|. +|+++++++++.+.++++|++.++++.+   .+..+.+. ...
T Consensus       124 ~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~~~  198 (271)
T cd05188         124 HALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE---EDLEEELR-LTG  198 (271)
T ss_pred             HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc---CCHHHHHH-Hhc
Confidence            998777777899999999986699999999999998 9999999999999999999888888776   66666666 555


Q ss_pred             CCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHH
Q 025336          139 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDK  214 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~  214 (254)
                      +.++|+++|+++....+..++++++++ |+++.++..............+.+++++.++....   ..++++++++
T Consensus       199 ~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  270 (271)
T cd05188         199 GGGADVVIDAVGGPETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGT---REDFEEALDL  270 (271)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEEccCCCCCCcccHHHHHhcceEEEEeecCC---HHHHHHHHhh
Confidence            568999999999844789999999999 99999998765222222345566999999987543   3456666665

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=7.7e-25  Score=180.03  Aligned_cols=239  Identities=23%  Similarity=0.328  Sum_probs=187.8

Q ss_pred             CCCCcccccCCceeeeee---ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC
Q 025336            2 LDGTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL   78 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~   78 (254)
                      |+++..+++ ||+|++..   ..|+|++|+.+++..++++|+++++.+++.+++++.+|++++.....++++++++|+|+
T Consensus        72 G~~~~~~~~-Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~  150 (325)
T cd08271          72 GAKVTGWKV-GDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGG  150 (325)
T ss_pred             CCCCCcCCC-CCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            566677889 99999764   25899999999999999999999999999999999999999877888999999999997


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHH
Q 025336           79 -GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  157 (254)
Q Consensus        79 -g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  157 (254)
                       |++|++++++++..|+ +|+++. ++++.+.++.+|++.+++...   .++...+.+...++++|.++||+++. ....
T Consensus       151 ~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~  224 (325)
T cd08271         151 AGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYND---EDVCERIKEITGGRGVDAVLDTVGGE-TAAA  224 (325)
T ss_pred             ccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCCC---ccHHHHHHHHcCCCCCcEEEECCCcH-hHHH
Confidence             8999999999999999 788775 677888888899988888776   67777788877777899999999987 5577


Q ss_pred             HHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC----------CCCCHHHHHHHHhCCCCCCCCceE
Q 025336          158 ALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK----------TKSDLPILLDKCKNKEFKLHQLLT  227 (254)
Q Consensus       158 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
                      .+++++++ |+++.++...... .  ...+ .+++.+....+....          ..+.+.++++++.++.++  +...
T Consensus       225 ~~~~l~~~-G~~v~~~~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~  297 (325)
T cd08271         225 LAPTLAFN-GHLVCIQGRPDAS-P--DPPF-TRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLE--PLVI  297 (325)
T ss_pred             HHHhhccC-CEEEEEcCCCCCc-c--hhHH-hhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCee--eccc
Confidence            89999999 9999987553311 1  1111 133443333221110          012356688888888854  3345


Q ss_pred             EEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          228 HHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +.++++++.++++.+.++.. .|+++++
T Consensus       298 ~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         298 EVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             eEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence            78999999999999987766 4988864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=4.9e-24  Score=176.11  Aligned_cols=242  Identities=21%  Similarity=0.291  Sum_probs=192.2

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |.++.++++ ||+|+++...|+|++|+.++...++++|+.+++++++.++.++.++|+++.....++++++|+|+|+ |+
T Consensus        72 g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~  150 (337)
T cd08275          72 GEGVKDFKV-GDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGG  150 (337)
T ss_pred             CCCCcCCCC-CCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcch
Confidence            566778899 9999987656899999999999999999999999999999999999999878889999999999997 99


Q ss_pred             HHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           81 VGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        81 ~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      +|++++++++.. +. .++.. ..+++.++++.+|++.+++...   .++...+++.++ .++|+++||+|+. ....++
T Consensus       151 ~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~-~~~d~v~~~~g~~-~~~~~~  223 (337)
T cd08275         151 VGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVIDYRT---QDYVEEVKKISP-EGVDIVLDALGGE-DTRKSY  223 (337)
T ss_pred             HHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEeeCCC---CcHHHHHHHHhC-CCceEEEECCcHH-HHHHHH
Confidence            999999999988 33 33222 2345788888899988888776   777788887775 5899999999986 678999


Q ss_pred             HHcccCCcEEEEEccCCC-ce---------------eeccHHHHHhCCCEEEeeecCCCCC-C----CCHHHHHHHHhCC
Q 025336          160 ETTKVGKGKVIVIGVGVD-TM---------------VPLNVIALACGGRTLKGTTFGGIKT-K----SDLPILLDKCKNK  218 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~-~~---------------~~~~~~~~~~~~~~i~g~~~~~~~~-~----~~~~~~~~~~~~~  218 (254)
                      ++++++ |+++.+|.... ..               ..+.+..++.++.++.+........ .    ..+.++++++.++
T Consensus       224 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (337)
T cd08275         224 DLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEG  302 (337)
T ss_pred             HhhccC-cEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCC
Confidence            999999 99999986543 11               1222234556888988886542211 1    2356788888898


Q ss_pred             CCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          219 EFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      .++  +..++.|++++++++++.+.++.. .|+++++
T Consensus       303 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         303 KIK--PKIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             CCC--CceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            854  445678999999999999887766 5998875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=1.5e-24  Score=179.03  Aligned_cols=237  Identities=23%  Similarity=0.314  Sum_probs=181.2

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      |+++..|++ ||+|++....|+|++|+.++...++++|+++++++++.++.++.+||+++.....+.++++|+|+|+ |+
T Consensus        73 G~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~  151 (331)
T cd08273          73 GSGVTGFEV-GDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGG  151 (331)
T ss_pred             CCCCccCCC-CCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcH
Confidence            667778999 9999987545899999999999999999999999999999999999999877788999999999986 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                      +|++++++++..|+ +|++++. +++.+.++++|+.. ++...   .++...  +..+ +++|.++||+++. .+..+++
T Consensus       152 ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~~~---~~~~~~--~~~~-~~~d~vl~~~~~~-~~~~~~~  221 (331)
T cd08273         152 VGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDYRT---KDWLPA--MLTP-GGVDVVFDGVGGE-SYEESYA  221 (331)
T ss_pred             HHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcCCC---cchhhh--hccC-CCceEEEECCchH-HHHHHHH
Confidence            99999999999999 8888876 88888888899754 45443   444333  3333 3899999999987 4889999


Q ss_pred             HcccCCcEEEEEccCCC-ceee--ccHH----------HHHhCCCEEEeeecCCCC------CCCCHHHHHHHHhCCCCC
Q 025336          161 TTKVGKGKVIVIGVGVD-TMVP--LNVI----------ALACGGRTLKGTTFGGIK------TKSDLPILLDKCKNKEFK  221 (254)
Q Consensus       161 ~l~~~~G~~v~~g~~~~-~~~~--~~~~----------~~~~~~~~i~g~~~~~~~------~~~~~~~~~~~~~~~~~~  221 (254)
                      +++++ |+++.+|.... ....  +++.          ........+.+.......      ..+.+.+++++++++.++
T Consensus       222 ~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~  300 (331)
T cd08273         222 ALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIR  300 (331)
T ss_pred             HhcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCcc
Confidence            99999 99999987654 1111  1110          011122233332221111      124577888999999854


Q ss_pred             CCCceEEEeecccHHHHHHHHcCCCe-eEEEE
Q 025336          222 LHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       222 ~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi  252 (254)
                        +.+.+.+++++++++|+.+.++.. +|+|+
T Consensus       301 --~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         301 --PKIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             --CCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence              446678999999999999887666 47765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.93  E-value=7.9e-25  Score=182.00  Aligned_cols=237  Identities=20%  Similarity=0.231  Sum_probs=180.1

Q ss_pred             CCCCcccccCCceeeeee---ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCC----CCEEE
Q 025336            2 LDGTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEK----GSSVA   74 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~----~~~vl   74 (254)
                      |.++..+++ ||+|++..   ..|+|++|+.+++..++++|+++++++++.+++++.|||+++.....+.+    |++|+
T Consensus        89 G~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vl  167 (350)
T cd08248          89 GSGVKSFEI-GDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVL  167 (350)
T ss_pred             CCCcccCCC-CCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEE
Confidence            566778899 99998764   35899999999999999999999999999999999999999877777654    99999


Q ss_pred             EEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChh
Q 025336           75 VLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  153 (254)
Q Consensus        75 I~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  153 (254)
                      |+|+ |++|++++++++.+|+ +|+++..+ ++.+.++++|.+.+++..+   .++...+..   ..++|+++|++|++ 
T Consensus       168 I~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~~~l~~---~~~vd~vi~~~g~~-  238 (350)
T cd08248         168 ILGGSGGVGTFAIQLLKAWGA-HVTTTCST-DAIPLVKSLGADDVIDYNN---EDFEEELTE---RGKFDVILDTVGGD-  238 (350)
T ss_pred             EECCCChHHHHHHHHHHHCCC-eEEEEeCc-chHHHHHHhCCceEEECCC---hhHHHHHHh---cCCCCEEEECCChH-
Confidence            9985 9999999999999999 88887654 6777888999988888765   555555443   34899999999987 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCC---ceeec--cH----HHHHh-------CCCEEEeeecCCCCCCCCHHHHHHHHhC
Q 025336          154 LLSEALETTKVGKGKVIVIGVGVD---TMVPL--NV----IALAC-------GGRTLKGTTFGGIKTKSDLPILLDKCKN  217 (254)
Q Consensus       154 ~~~~~~~~l~~~~G~~v~~g~~~~---~~~~~--~~----~~~~~-------~~~~i~g~~~~~~~~~~~~~~~~~~~~~  217 (254)
                      ....++++++++ |+++.+|....   .....  ..    ..+..       +...+.....  ......+.++++++.+
T Consensus       239 ~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  315 (350)
T cd08248         239 TEKWALKLLKKG-GTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFF--SPSGSALDELAKLVED  315 (350)
T ss_pred             HHHHHHHHhccC-CEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEE--CCCHHHHHHHHHHHhC
Confidence            789999999999 99999986532   11111  00    01110       0110100000  1123458889999999


Q ss_pred             CCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          218 KEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      +.++  +.+++.|++++++++|+.+.++.. .|++++
T Consensus       316 g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  350 (350)
T cd08248         316 GKIK--PVIDKVFPFEEVPEAYEKVESGHARGKTVIK  350 (350)
T ss_pred             CCEe--cccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence            9854  446778999999999999887765 487763

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=4e-24  Score=175.33  Aligned_cols=236  Identities=24%  Similarity=0.302  Sum_probs=179.2

Q ss_pred             CCCCcccccCCceeeeeec---cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC
Q 025336            2 LDGTSRMSVRGQKLYHIFS---CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL   78 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~---~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~   78 (254)
                      |+++..+++ ||+|+....   .|+|++|+.++...++++|+++++++++.+++++.+||+++.....++++++|+|+|+
T Consensus        74 G~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~  152 (319)
T cd08267          74 GSGVTRFKV-GDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGA  152 (319)
T ss_pred             CCCCCCCCC-CCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            667778899 999997642   4899999999999999999999999999999999999999877777999999999997


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCCh-hHHH
Q 025336           79 -GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP-SLLS  156 (254)
Q Consensus        79 -g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~  156 (254)
                       |++|++++++++..|+ +|++++.+ ++.+.++++|.+.+++...   .++.   ...+.+.++|+++||+++. ....
T Consensus       153 ~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~---~~~~~~~~~d~vi~~~~~~~~~~~  224 (319)
T cd08267         153 SGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT---EDFV---ALTAGGEKYDVIFDAVGNSPFSLY  224 (319)
T ss_pred             CcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC---CCcc---hhccCCCCCcEEEECCCchHHHHH
Confidence             9999999999999999 88888765 8888889999988887765   3333   3345556899999999853 2233


Q ss_pred             HHHHHcccCCcEEEEEccCCC-ceeec---cHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeec
Q 025336          157 EALETTKVGKGKVIVIGVGVD-TMVPL---NVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKL  232 (254)
Q Consensus       157 ~~~~~l~~~~G~~v~~g~~~~-~~~~~---~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (254)
                      ..+..++++ |+++.+|.... .....   ...... ....+.......  ..+.+.++++++.+++++  +.+++.|++
T Consensus       225 ~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~--~~~~~~~~~  298 (319)
T cd08267         225 RASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGG-GGRRLKFFLAKP--NAEDLEQLAELVEEGKLK--PVIDSVYPL  298 (319)
T ss_pred             HhhhccCCC-CEEEEeccccccccccccccchhhcc-ccceEEEEEecC--CHHHHHHHHHHHHCCCee--eeeeeEEcH
Confidence            444448999 99999997654 21111   111111 223333322211  245688899999998854  456788999


Q ss_pred             ccHHHHHHHHcCCCe-eEEEE
Q 025336          233 EEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       233 ~~~~~a~~~~~~~~~-~k~vi  252 (254)
                      ++++++|+.+.++.. .|+++
T Consensus       299 ~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         299 EDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             HHHHHHHHHHhcCCCCCcEeC
Confidence            999999999987665 36653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.92  E-value=1.2e-23  Score=171.61  Aligned_cols=230  Identities=20%  Similarity=0.264  Sum_probs=183.9

Q ss_pred             CCCCcccccCCceeeeee---ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC
Q 025336            2 LDGTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL   78 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~   78 (254)
                      |+++..+++ ||+|+++.   ..|+|++|+.++...++++|+++++.+++.++..+.+++.++.....+.++++|+|+|+
T Consensus        75 G~~~~~~~~-G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~  153 (309)
T cd05289          75 GPGVTGFKV-GDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGA  153 (309)
T ss_pred             CCCCCCCCC-CCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecC
Confidence            556667889 99999775   14899999999999999999999999999999999999999877677999999999996


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHH
Q 025336           79 -GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  157 (254)
Q Consensus        79 -g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  157 (254)
                       |.+|++++++++..|+ +|++++.++ +.+.++++|.+.+++...   .++..    ...+.++|.++||+++. ....
T Consensus       154 ~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~----~~~~~~~d~v~~~~~~~-~~~~  223 (309)
T cd05289         154 AGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVIDYTK---GDFER----AAAPGGVDAVLDTVGGE-TLAR  223 (309)
T ss_pred             CchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEEeCCC---Cchhh----ccCCCCceEEEECCchH-HHHH
Confidence             9999999999999999 888887776 888888899888887665   44333    33445899999999987 7899


Q ss_pred             HHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHH
Q 025336          158 ALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDK  237 (254)
Q Consensus       158 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (254)
                      ++++++++ |+++.+|..... ..    ....++.++........  ...+.+++++++++.+  .+.+++.|+++++++
T Consensus       224 ~~~~l~~~-g~~v~~g~~~~~-~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  293 (309)
T cd05289         224 SLALVKPG-GRLVSIAGPPPA-EQ----AAKRRGVRAGFVFVEPD--GEQLAELAELVEAGKL--RPVVDRVFPLEDAAE  293 (309)
T ss_pred             HHHHHhcC-cEEEEEcCCCcc-hh----hhhhccceEEEEEeccc--HHHHHHHHHHHHCCCE--EEeeccEEcHHHHHH
Confidence            99999999 999999875431 11    22335666666543221  4568889999999884  344677899999999


Q ss_pred             HHHHHcCCCe-eEEEE
Q 025336          238 AIQLLKQPDC-VKVLI  252 (254)
Q Consensus       238 a~~~~~~~~~-~k~vi  252 (254)
                      +|+.+.++.. .|+++
T Consensus       294 a~~~~~~~~~~~kvv~  309 (309)
T cd05289         294 AHERLESGHARGKVVL  309 (309)
T ss_pred             HHHHHHhCCCCCcEeC
Confidence            9999887665 46653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.86  E-value=4.9e-21  Score=136.75  Aligned_cols=130  Identities=29%  Similarity=0.459  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      ++|++++|+||.+|+ +|+++++++++++.++++|+++++++++   .++.+.+++++++.++|++|||+|.+..++.++
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~---~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~   76 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD---DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT---SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc---cccccccccccccccceEEEEecCcHHHHHHHH
Confidence            589999999999997 9999999999999999999999999998   889999999999889999999999777999999


Q ss_pred             HHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhC
Q 025336          160 ETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKN  217 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~  217 (254)
                      ++++++ |+++.+|.......+++...++++++++.|++.+.   .++++++++++++
T Consensus        77 ~~l~~~-G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la~  130 (130)
T PF00107_consen   77 KLLRPG-GRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLAQ  130 (130)
T ss_dssp             HHEEEE-EEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH-
T ss_pred             HHhccC-CEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhcC
Confidence            999999 99999999885578888999999999999998653   5778888888753

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.63  E-value=2.8e-14  Score=118.87  Aligned_cols=174  Identities=21%  Similarity=0.231  Sum_probs=135.8

Q ss_pred             hHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHh
Q 025336           58 FGAAWKEAE-VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        58 ~~~l~~~~~-~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      +.++.+..+ .-+|++|+|+|.|++|+.+++.++.+|+ +|++++.++.+.+.++.+|++.+ +        ..+.+   
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~--------~~e~v---  255 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T--------MEEAV---  255 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c--------HHHHH---
Confidence            344434333 3589999999999999999999999999 89999999999999999998532 1        11122   


Q ss_pred             hCCCCccEEEEcCCChhHHHHH-HHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHH--HHHH
Q 025336          137 THGMGVDYCFECTGVPSLLSEA-LETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLP--ILLD  213 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~--~~~~  213 (254)
                         .++|++|+|+|.+..+... ++.++++ |+++.+|..   ...++...+..+++++.++....  ....++  +.+.
T Consensus       256 ---~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~---~~eId~~~L~~~el~i~g~~~~~--~~~~~~~g~aI~  326 (413)
T cd00401         256 ---KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF---DVEIDVKGLKENAVEVVNIKPQV--DRYELPDGRRII  326 (413)
T ss_pred             ---cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC---CCccCHHHHHhhccEEEEccCCc--ceEEcCCcchhh
Confidence               2689999999988778776 9999999 999999965   35677777888899998876432  112355  6899


Q ss_pred             HHhCCCC-CCCCceEEE-----eecc-cHHHHHHHHcCCCe--eEEEEe
Q 025336          214 KCKNKEF-KLHQLLTHH-----VKLE-EIDKAIQLLKQPDC--VKVLIT  253 (254)
Q Consensus       214 ~~~~~~~-~~~~~~~~~-----~~~~-~~~~a~~~~~~~~~--~k~vi~  253 (254)
                      ++.+|.+ ++...++|.     ++|+ |+.+++..+.++..  .|+++.
T Consensus       327 LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~  375 (413)
T cd00401         327 LLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFL  375 (413)
T ss_pred             hhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEEC
Confidence            9999998 778777777     8899 99999999987654  477764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.56  E-value=5e-14  Score=120.18  Aligned_cols=156  Identities=19%  Similarity=0.230  Sum_probs=114.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCC----------CchHHHHHHH
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEP----------NKSISELVKG  135 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~----------~~~~~~~i~~  135 (254)
                      ..++++|+|+|+|++|+++++.|+.+|+ +|+++|.++++.+.++++|++.+ ++..+.+          ..++.+..++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            4579999999999999999999999999 89999999999999999999854 5553200          0123333333


Q ss_pred             h-hC-CCCccEEEEcCCChh-----H-HHHHHHHcccCCcEEEEEccCCC-c-eeeccHHHHHh-CCCEEEeeecCCCCC
Q 025336          136 I-TH-GMGVDYCFECTGVPS-----L-LSEALETTKVGKGKVIVIGVGVD-T-MVPLNVIALAC-GGRTLKGTTFGGIKT  204 (254)
Q Consensus       136 ~-~~-~~~~d~v~d~~g~~~-----~-~~~~~~~l~~~~G~~v~~g~~~~-~-~~~~~~~~~~~-~~~~i~g~~~~~~~~  204 (254)
                      . .+ .+++|++|+|++.+.     . .+..++.++++ |++++++...+ . ..+.+...++. +++++.|...  +. 
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n--~P-  316 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTD--LP-  316 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeCC--Cc-
Confidence            2 22 147999999999632     4 49999999999 99999998543 2 24444445554 8999998762  22 


Q ss_pred             CCCHHHHHHHHhCCCCCCCCceE
Q 025336          205 KSDLPILLDKCKNKEFKLHQLLT  227 (254)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
                      .+...++.+++.++.+++.++++
T Consensus       317 ~~~p~~As~lla~~~i~l~~lIt  339 (509)
T PRK09424        317 SRLPTQSSQLYGTNLVNLLKLLC  339 (509)
T ss_pred             hhHHHHHHHHHHhCCccHHHHhc
Confidence            23344689999999887666555

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.52  E-value=7.9e-15  Score=104.12  Aligned_cols=120  Identities=24%  Similarity=0.315  Sum_probs=77.4

Q ss_pred             cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC--ChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhC
Q 025336          113 FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG--VPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACG  190 (254)
Q Consensus       113 ~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~  190 (254)
                      +|+++++||++   +++       .+..+||+||||+|  .+..+..+++++ ++ |+++.++.      .........+
T Consensus         1 LGAd~vidy~~---~~~-------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~------~~~~~~~~~~   62 (127)
T PF13602_consen    1 LGADEVIDYRD---TDF-------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG------DLPSFARRLK   62 (127)
T ss_dssp             CT-SEEEETTC---SHH-------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S------HHHHHHHHHH
T ss_pred             CCcCEEecCCC---ccc-------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC------cccchhhhhc
Confidence            68999999987   666       34459999999999  554446777788 98 99999884      1111111112


Q ss_pred             CCEEEeeecCCCC----CCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEE
Q 025336          191 GRTLKGTTFGGIK----TKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  252 (254)
Q Consensus       191 ~~~i~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi  252 (254)
                      ...+....+....    ..+.++++.+++++|+  +++.+.++|||+++++|++.+++++. +|+||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~--l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   63 GRSIRYSFLFSVDPNAIRAEALEELAELVAEGK--LKPPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             CHHCEEECCC-H--HHHHHHHHHHHHHHHHTTS--S---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             ccceEEEEEEecCCCchHHHHHHHHHHHHHCCC--eEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            2222222222100    1345999999999999  66778889999999999999999888 69986

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.83  E-value=2.2e-08  Score=80.52  Aligned_cols=162  Identities=19%  Similarity=0.220  Sum_probs=100.9

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhh-
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAA-KIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGIT-  137 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~-~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~-  137 (254)
                      ...++++++||.+|+|+ |..+.++++..|.. +|++++.+++..+.+++.    +...+- ...   .+    +.++. 
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~-~~~---~d----~~~l~~  142 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVE-FRL---GE----IEALPV  142 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEE-EEE---cc----hhhCCC
Confidence            45678999999999887 88888888887753 799999999999988763    332221 111   12    12222 


Q ss_pred             CCCCccEEEEc-C-----CChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHH
Q 025336          138 HGMGVDYCFEC-T-----GVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPIL  211 (254)
Q Consensus       138 ~~~~~d~v~d~-~-----g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~  211 (254)
                      ....||+|+.. +     .....+..+.+.|+++ |+++..+.......  + ..+. +...+.+.....   .....++
T Consensus       143 ~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~~~--~-~~~~-~~~~~~~~~~~~---~~~~~e~  214 (272)
T PRK11873        143 ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRGEL--P-EEIR-NDAELYAGCVAG---ALQEEEY  214 (272)
T ss_pred             CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccCCC--C-HHHH-HhHHHHhccccC---CCCHHHH
Confidence            12379999853 3     2244789999999999 99998775433211  1 1111 222222222111   2335556


Q ss_pred             HHHHhC-CCCCCCCceEEEeecccHHHHHHHH
Q 025336          212 LDKCKN-KEFKLHQLLTHHVKLEEIDKAIQLL  242 (254)
Q Consensus       212 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~  242 (254)
                      .+++++ |...........++++++.++++.+
T Consensus       215 ~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~  246 (272)
T PRK11873        215 LAMLAEAGFVDITIQPKREYRIPDAREFLEDW  246 (272)
T ss_pred             HHHHHHCCCCceEEEeccceecccHHHHHHHh
Confidence            666665 4433333344567889999999888

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.83  E-value=5.5e-08  Score=83.39  Aligned_cols=107  Identities=21%  Similarity=0.340  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCC----------CCchHHHHHHHhh
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDE----------PNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~----------~~~~~~~~i~~~~  137 (254)
                      ++++++|+|+|.+|+++++.++.+|+ .|++.+.++++++.++++|++.+ ++..+.          -.++..+...+..
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~  241 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF  241 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence            57899999999999999999999999 89999999999999999998753 332110          0122333333322


Q ss_pred             C--CCCccEEEEcC---CChh---HHHHHHHHcccCCcEEEEEccCCC
Q 025336          138 H--GMGVDYCFECT---GVPS---LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       138 ~--~~~~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .  ..++|++|+|+   |.+.   ..+..++.++++ +.+++++...+
T Consensus       242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~G  288 (511)
T TIGR00561       242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQG  288 (511)
T ss_pred             HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCC
Confidence            2  34799999999   6543   467889999999 99999987665

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.67  E-value=9.1e-07  Score=74.55  Aligned_cols=105  Identities=24%  Similarity=0.293  Sum_probs=79.2

Q ss_pred             hhhHHHHHhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHH
Q 025336           56 TGFGAAWKEAEVE-KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        56 ta~~~l~~~~~~~-~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      .+|.++.....+. .|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+...+...|+. +.+        ..+.+ 
T Consensus       197 s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~~--------l~eal-  265 (425)
T PRK05476        197 SLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VMT--------MEEAA-  265 (425)
T ss_pred             hhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ecC--------HHHHH-
Confidence            3455554332444 89999999999999999999999999 999999998887766666654 221        11111 


Q ss_pred             HhhCCCCccEEEEcCCChhHHH-HHHHHcccCCcEEEEEccCCC
Q 025336          135 GITHGMGVDYCFECTGVPSLLS-EALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~  177 (254)
                           .++|++++++|....+. ..+..++++ +.++..|....
T Consensus       266 -----~~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d~  303 (425)
T PRK05476        266 -----ELGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFDN  303 (425)
T ss_pred             -----hCCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCCC
Confidence                 17899999999876676 678889998 89888887653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.62  E-value=1.1e-06  Score=71.32  Aligned_cols=111  Identities=17%  Similarity=0.171  Sum_probs=81.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+++++|+|.|.+|+.+++.++.+|+ +|++.++++++.+.++++|...+ ..     .++.    +..  .++|+||+|
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~-----~~l~----~~l--~~aDiVI~t  217 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL-----SELA----EEV--GKIDIIFNT  217 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH-----HHHH----HHh--CCCCEEEEC
Confidence            68999999999999999999999999 99999999888888888886532 21     1222    222  279999999


Q ss_pred             CCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEe
Q 025336          149 TGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKG  196 (254)
Q Consensus       149 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g  196 (254)
                      ++........++.++++ +.+++++..++ ...+  .....++++..+
T Consensus       218 ~p~~~i~~~~l~~~~~g-~vIIDla~~pg-gtd~--~~a~~~Gv~~~~  261 (296)
T PRK08306        218 IPALVLTKEVLSKMPPE-ALIIDLASKPG-GTDF--EYAEKRGIKALL  261 (296)
T ss_pred             CChhhhhHHHHHcCCCC-cEEEEEccCCC-CcCe--eehhhCCeEEEE
Confidence            87653445677789998 99999988766 1222  122335666654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.50  E-value=3.3e-06  Score=70.79  Aligned_cols=93  Identities=26%  Similarity=0.303  Sum_probs=74.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      ..+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.+...++..|+. +.+        ..+.+      .+.|++|
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~--------leeal------~~aDVVI  255 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT--------MEEAA------KIGDIFI  255 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC--------HHHHH------hcCCEEE
Confidence            3579999999999999999999999999 899999888887777777763 221        11122      2679999


Q ss_pred             EcCCChhHHHH-HHHHcccCCcEEEEEccCC
Q 025336          147 ECTGVPSLLSE-ALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       147 d~~g~~~~~~~-~~~~l~~~~G~~v~~g~~~  176 (254)
                      +++|....+.. .+..++++ +.++..|...
T Consensus       256 taTG~~~vI~~~~~~~mK~G-ailiN~G~~~  285 (406)
T TIGR00936       256 TATGNKDVIRGEHFENMKDG-AIVANIGHFD  285 (406)
T ss_pred             ECCCCHHHHHHHHHhcCCCC-cEEEEECCCC
Confidence            99998877764 78889998 8998888764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.37  E-value=2.2e-06  Score=70.12  Aligned_cols=108  Identities=21%  Similarity=0.229  Sum_probs=76.3

Q ss_pred             CceEEcCCCCCccccccccchhhhhhHHHHHhcCC----CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccH-
Q 025336           33 NYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEV----EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKK-  107 (254)
Q Consensus        33 ~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~----~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~-  107 (254)
                      ..++++|+.+..+.++.. .+...++.++. .+..    -++.+|+|+|+|.+|+.+++.++..|..+|+++++++++. 
T Consensus       139 ~~a~~~~k~vr~et~i~~-~~~sv~~~Av~-~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~  216 (311)
T cd05213         139 QKAIKVGKRVRTETGISR-GAVSISSAAVE-LAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE  216 (311)
T ss_pred             HHHHHHHHHHhhhcCCCC-CCcCHHHHHHH-HHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            356677888888777765 34555665543 2222    3689999999999999999999988876899999988765 


Q ss_pred             HHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336          108 EKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus       108 ~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      ++++++|.. +++.     +++.+.+      ..+|+||.|++.+..
T Consensus       217 ~la~~~g~~-~~~~-----~~~~~~l------~~aDvVi~at~~~~~  251 (311)
T cd05213         217 ELAKELGGN-AVPL-----DELLELL------NEADVVISATGAPHY  251 (311)
T ss_pred             HHHHHcCCe-EEeH-----HHHHHHH------hcCCEEEECCCCCch
Confidence            567778873 3322     2222222      168999999998744

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN02494 adenosylhomocysteinase

Probab=98.36  E-value=9.4e-06  Score=68.85  Aligned_cols=92  Identities=21%  Similarity=0.294  Sum_probs=74.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      -.|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+...+...|+.. ++        ..+.+      ...|++++
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~v-v~--------leEal------~~ADVVI~  315 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQV-LT--------LEDVV------SEADIFVT  315 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCee-cc--------HHHHH------hhCCEEEE
Confidence            579999999999999999999999999 8999999888777777777652 21        22222      16799999


Q ss_pred             cCCChhHH-HHHHHHcccCCcEEEEEccCC
Q 025336          148 CTGVPSLL-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       148 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      |.|....+ ...+..++++ +.++.+|...
T Consensus       316 tTGt~~vI~~e~L~~MK~G-AiLiNvGr~~  344 (477)
T PLN02494        316 TTGNKDIIMVDHMRKMKNN-AIVCNIGHFD  344 (477)
T ss_pred             CCCCccchHHHHHhcCCCC-CEEEEcCCCC
Confidence            99987553 7899999999 9999999853

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.29  E-value=2.8e-05  Score=61.67  Aligned_cols=147  Identities=18%  Similarity=0.287  Sum_probs=91.6

Q ss_pred             cccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHH
Q 025336            8 MSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVD   87 (254)
Q Consensus         8 ~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~   87 (254)
                      +.+ |++++..   .+|.+|.. +...++.+++++++..+.-- .+.. ....+.  ..+.++++||-+|+|. |.+++.
T Consensus        67 ~~~-g~~~~i~---p~~~~~~~-~~~~~i~i~p~~afgtg~h~-tt~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~  136 (250)
T PRK00517         67 IRI-GDRLWIV---PSWEDPPD-PDEINIELDPGMAFGTGTHP-TTRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIA  136 (250)
T ss_pred             EEE-cCCEEEE---CCCcCCCC-CCeEEEEECCCCccCCCCCH-HHHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHH
Confidence            445 6665533   34777755 77788999999888876522 2111 122221  1256789999999987 877776


Q ss_pred             HHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCCh---hHHHHHHHHccc
Q 025336           88 GARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP---SLLSEALETTKV  164 (254)
Q Consensus        88 ~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~  164 (254)
                      +++ .|..+|++++.++...+.+++.....-+...    -.+      ..+...||+|+-+....   ..++.+.+.+++
T Consensus       137 ~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~----~~~------~~~~~~fD~Vvani~~~~~~~l~~~~~~~Lkp  205 (250)
T PRK00517        137 AAK-LGAKKVLAVDIDPQAVEAARENAELNGVELN----VYL------PQGDLKADVIVANILANPLLELAPDLARLLKP  205 (250)
T ss_pred             HHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCce----EEE------ccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCC
Confidence            554 6775799999999888887653211101000    000      00111699998665543   245678888999


Q ss_pred             CCcEEEEEccCC
Q 025336          165 GKGKVIVIGVGV  176 (254)
Q Consensus       165 ~~G~~v~~g~~~  176 (254)
                      + |+++..|...
T Consensus       206 g-G~lilsgi~~  216 (250)
T PRK00517        206 G-GRLILSGILE  216 (250)
T ss_pred             C-cEEEEEECcH
Confidence            9 9999887643

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.21  E-value=2.1e-05  Score=65.88  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+.. ++........+  ..++.+.+      ..+|++|+|
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~--~~~l~~~l------~~aDvVI~a  237 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN--AYEIEDAV------KRADLLIGA  237 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC--HHHHHHHH------ccCCEEEEc
Confidence            4569999999999999999999999 89999999888777654 45432222222  12222222      278999999


Q ss_pred             CC---C--hh-HHHHHHHHcccCCcEEEEEccCCC
Q 025336          149 TG---V--PS-LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       149 ~g---~--~~-~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ++   .  +. .....++.++++ +.++.++...+
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~G  271 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQG  271 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCCC
Confidence            83   2  21 136777889998 99999887655

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.14  E-value=4.4e-05  Score=65.01  Aligned_cols=93  Identities=24%  Similarity=0.320  Sum_probs=72.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .-.|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.+...+...|+.. .        ++.+.+      ...|+++
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~-~--------~leell------~~ADIVI  314 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQV-V--------TLEDVV------ETADIFV  314 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCcee-c--------cHHHHH------hcCCEEE
Confidence            3479999999999999999999999999 8999988877665555556432 1        122222      2789999


Q ss_pred             EcCCChhHHH-HHHHHcccCCcEEEEEccCC
Q 025336          147 ECTGVPSLLS-EALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       147 d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .+.|....+. ..+..++++ +.++.+|...
T Consensus       315 ~atGt~~iI~~e~~~~MKpG-AiLINvGr~d  344 (476)
T PTZ00075        315 TATGNKDIITLEHMRRMKNN-AIVGNIGHFD  344 (476)
T ss_pred             ECCCcccccCHHHHhccCCC-cEEEEcCCCc
Confidence            9999876664 888999999 9999998764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.12  E-value=8e-05  Score=60.15  Aligned_cols=95  Identities=16%  Similarity=0.212  Sum_probs=70.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+++++|+|.|.+|+.+++.++..|+ +|++.++++++.+.+.+.|... +..     .++.    +..  .++|++++|
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~-~~~-----~~l~----~~l--~~aDiVint  216 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIP-FPL-----NKLE----EKV--AEIDIVINT  216 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-ecH-----HHHH----HHh--ccCCEEEEC
Confidence            57899999999999999999999999 9999999988777776666432 211     2222    222  278999999


Q ss_pred             CCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          149 TGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       149 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +...-.-...+..++++ ..++.++..++
T Consensus       217 ~P~~ii~~~~l~~~k~~-aliIDlas~Pg  244 (287)
T TIGR02853       217 IPALVLTADVLSKLPKH-AVIIDLASKPG  244 (287)
T ss_pred             CChHHhCHHHHhcCCCC-eEEEEeCcCCC
Confidence            97642224566778887 88888887655

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08324 short chain dehydrogenase; Validated

Probab=98.11  E-value=3.9e-05  Score=69.65  Aligned_cols=140  Identities=17%  Similarity=0.222  Sum_probs=86.6

Q ss_pred             cceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 025336           23 TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        23 ~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      ++++|..+|+..++.+ +..+.+++..-..          ...+..+|+++||+|+ |++|+.+++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            5677877887777766 5555566542100          0122336789999986 9999999999999999 899999


Q ss_pred             CCcccHHHHH-hcCC--c---eEeCCCCCCCchHHHHHHHhh-CCCCccEEEEcCCCh----------------------
Q 025336          102 KNPWKKEKGE-AFGM--T---DFINPDDEPNKSISELVKGIT-HGMGVDYCFECTGVP----------------------  152 (254)
Q Consensus       102 ~~~~~~~~~~-~~g~--~---~v~~~~~~~~~~~~~~i~~~~-~~~~~d~v~d~~g~~----------------------  152 (254)
                      ++.++.+.+. .++.  .   ...|..+  .......+.+.. ...++|++|++.|..                      
T Consensus       454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd--~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~  531 (681)
T PRK08324        454 LDEEAAEAAAAELGGPDRALGVACDVTD--EAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNAT  531 (681)
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEecCCC--HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhH
Confidence            9887766543 3332  1   1224433  122333333321 122799999999831                      


Q ss_pred             ---hHHHHHHHHccc---CCcEEEEEccCCC
Q 025336          153 ---SLLSEALETTKV---GKGKVIVIGVGVD  177 (254)
Q Consensus       153 ---~~~~~~~~~l~~---~~G~~v~~g~~~~  177 (254)
                         ..++.+++.+++   + |+++.+++...
T Consensus       532 g~~~l~~~~~~~l~~~~~~-g~iV~vsS~~~  561 (681)
T PRK08324        532 GHFLVAREAVRIMKAQGLG-GSIVFIASKNA  561 (681)
T ss_pred             HHHHHHHHHHHHHHhcCCC-cEEEEECCccc
Confidence               123344555555   5 88998887543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=2.9e-05  Score=58.68  Aligned_cols=119  Identities=20%  Similarity=0.295  Sum_probs=83.1

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD  117 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~  117 (254)
                      ++.....+++.+...|.  |.....++++++||-+|+|+ |..++-+++..|  +|+.+++.++=.+.+    +.+|..+
T Consensus        47 lpi~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n  121 (209)
T COG2518          47 LPIGCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN  121 (209)
T ss_pred             ccCCCCceecCcHHHHH--HHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence            44445555655555554  34788899999999999875 899999999888  699998887755544    4577644


Q ss_pred             Ee-CCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          118 FI-NPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       118 v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      |. ...+     -   ...+....+||.|+-+.+.+..-+.+++.|+++ |+++..=.
T Consensus       122 V~v~~gD-----G---~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~PvG  170 (209)
T COG2518         122 VTVRHGD-----G---SKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIPVG  170 (209)
T ss_pred             eEEEECC-----c---ccCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEEEc
Confidence            32 2221     1   122334458999998888775557889999999 98876543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.00  E-value=1.1e-05  Score=71.68  Aligned_cols=79  Identities=22%  Similarity=0.239  Sum_probs=57.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---------------------cccHHHHHhcCCceEeCCCCC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN---------------------PWKKEKGEAFGMTDFINPDDE  124 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~---------------------~~~~~~~~~~g~~~v~~~~~~  124 (254)
                      +.++|++|+|+|+|++|+++++.++..|+ +|++++..                     .++.+.++++|++..++....
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            36789999999999999999999999999 89888753                     245566778998766654320


Q ss_pred             CCchH-HHHHHHhhCCCCccEEEEcCCCh
Q 025336          125 PNKSI-SELVKGITHGMGVDYCFECTGVP  152 (254)
Q Consensus       125 ~~~~~-~~~i~~~~~~~~~d~v~d~~g~~  152 (254)
                        .+. ...+    . .++|.+|+++|..
T Consensus       212 --~~~~~~~~----~-~~~D~Vi~AtG~~  233 (564)
T PRK12771        212 --EDITLEQL----E-GEFDAVFVAIGAQ  233 (564)
T ss_pred             --CcCCHHHH----H-hhCCEEEEeeCCC
Confidence              111 1111    1 2699999999975

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.93  E-value=0.00011  Score=59.44  Aligned_cols=98  Identities=21%  Similarity=0.230  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCc-eEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMT-DFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ..++++||-+|+|+ |.+++.+++ .|..+|++++.++...+.+++.    +.. .+....    .+    ...... .+
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~----~~----~~~~~~-~~  225 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL----IY----LEQPIE-GK  225 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe----cc----cccccC-CC
Confidence            45789999999887 877777665 5766899999999888777653    211 111111    11    111122 38


Q ss_pred             ccEEEEcCCCh---hHHHHHHHHcccCCcEEEEEccCC
Q 025336          142 VDYCFECTGVP---SLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       142 ~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ||+|+......   ..+..+.+.++++ |.++..|...
T Consensus       226 fDlVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~~  262 (288)
T TIGR00406       226 ADVIVANILAEVIKELYPQFSRLVKPG-GWLILSGILE  262 (288)
T ss_pred             ceEEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCcH
Confidence            99999755432   3466778899999 9999887643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.93  E-value=0.00024  Score=54.24  Aligned_cols=102  Identities=23%  Similarity=0.387  Sum_probs=70.4

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cC-CceEeCCCCCCCchHHHHHHHh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FG-MTDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      ....+.++++||.+|+|+ |.+++++++..+. .+|++++.+++..+.+++    ++ .+.+....    .+..+.+...
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~----~d~~~~l~~~  108 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK----GEAPEILFTI  108 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE----echhhhHhhc
Confidence            567788999999999987 9999999987652 389999999988886653    55 33222111    2222223222


Q ss_pred             hCCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEE
Q 025336          137 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  172 (254)
                       . ..||.||...+.   ...++.+.+.++++ |+++..
T Consensus       109 -~-~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~  144 (198)
T PRK00377        109 -N-EKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID  144 (198)
T ss_pred             -C-CCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence             2 379999985543   33577888899999 998753

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.90  E-value=4.8e-05  Score=54.31  Aligned_cols=95  Identities=24%  Similarity=0.280  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCc--eEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMT--DFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ++.+++|+|+|++|.+++..+...|+++++++.|+.+|.+.+. .++..  .++.+.+     +...+      ..+|++
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~-----~~~~~------~~~Div   79 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED-----LEEAL------QEADIV   79 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG-----HCHHH------HTESEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH-----HHHHH------hhCCeE
Confidence            5889999999999999999999999977999999988877654 45322  2344432     22222      179999


Q ss_pred             EEcCCChhH--HHHHHHHccc-CCcEEEEEccC
Q 025336          146 FECTGVPSL--LSEALETTKV-GKGKVIVIGVG  175 (254)
Q Consensus       146 ~d~~g~~~~--~~~~~~~l~~-~~G~~v~~g~~  175 (254)
                      |+|++.+..  .+..+....+ - +.+++++.+
T Consensus        80 I~aT~~~~~~i~~~~~~~~~~~~-~~v~Dla~P  111 (135)
T PF01488_consen   80 INATPSGMPIITEEMLKKASKKL-RLVIDLAVP  111 (135)
T ss_dssp             EE-SSTTSTSSTHHHHTTTCHHC-SEEEES-SS
T ss_pred             EEecCCCCcccCHHHHHHHHhhh-hceeccccC
Confidence            999886521  1222222222 1 366677654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.87  E-value=0.00012  Score=61.57  Aligned_cols=113  Identities=13%  Similarity=0.147  Sum_probs=76.9

Q ss_pred             ccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchH
Q 025336           50 LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSI  129 (254)
Q Consensus        50 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  129 (254)
                      +..+....+..+....+++++++||-+|+| .|..+..+++..|+ +|++++.+++..+.+++.....-+....   .+.
T Consensus       148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D~  222 (383)
T PRK11705        148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL---QDY  222 (383)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE---Cch
Confidence            333444455556677888999999999986 47788889998899 9999999999999987643221111111   222


Q ss_pred             HHHHHHhhCCCCccEEEEc-----CCC---hhHHHHHHHHcccCCcEEEEEcc
Q 025336          130 SELVKGITHGMGVDYCFEC-----TGV---PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       130 ~~~i~~~~~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                          .++ .+ .||.|+..     ++.   +..+..+.+.|+|+ |+++....
T Consensus       223 ----~~l-~~-~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~i  268 (383)
T PRK11705        223 ----RDL-NG-QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHTI  268 (383)
T ss_pred             ----hhc-CC-CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEEc
Confidence                112 23 79998743     333   23578888899999 99887543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.80  E-value=0.00033  Score=51.94  Aligned_cols=104  Identities=21%  Similarity=0.265  Sum_probs=71.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ...++++|+.++=+|+|. |..++++++..-..+|++++++++..+..+    ++|.+++..-.    .+..+.+.   +
T Consensus        28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~----g~Ap~~L~---~   99 (187)
T COG2242          28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE----GDAPEALP---D   99 (187)
T ss_pred             HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe----ccchHhhc---C
Confidence            567789999877779864 788889996444459999999999888764    57876432222    22222222   2


Q ss_pred             CCCccEEEEcCCC--hhHHHHHHHHcccCCcEEEEEccC
Q 025336          139 GMGVDYCFECTGV--PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       139 ~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      -..+|.+|=--|.  +..++.++..++++ |++|.-...
T Consensus       100 ~~~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nait  137 (187)
T COG2242         100 LPSPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAIT  137 (187)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeec
Confidence            2268999853332  34688999999999 999876543

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.80  E-value=0.00014  Score=62.27  Aligned_cols=74  Identities=26%  Similarity=0.338  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHH-HHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKE-KGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .++.+|+|+|+|.+|.++++.++..|+.+|++++++.++.+ +++.+|.+ +++.     .+..+.+      .++|+||
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~-----~~~~~~l------~~aDvVI  247 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPL-----DELPEAL------AEADIVI  247 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeH-----HHHHHHh------ccCCEEE
Confidence            57889999999999999999999999878999999987755 56777753 3322     1222222      2789999


Q ss_pred             EcCCChh
Q 025336          147 ECTGVPS  153 (254)
Q Consensus       147 d~~g~~~  153 (254)
                      +|++.+.
T Consensus       248 ~aT~s~~  254 (423)
T PRK00045        248 SSTGAPH  254 (423)
T ss_pred             ECCCCCC
Confidence            9998753

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.74  E-value=0.00081  Score=52.69  Aligned_cols=104  Identities=17%  Similarity=0.259  Sum_probs=66.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-Hh---cCCceEe--CCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EA---FGMTDFI--NPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~---~g~~~v~--~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      ++++|+|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ +.   .+..+.+  |..+  .......+.+... ..
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS--TESARNVIEKAAKVLN   80 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4679999987 9999999999999999 999999988776655 22   2222222  3332  1223333332211 12


Q ss_pred             CccEEEEcCCChh-----------------------HHHHHHHHcccCCcEEEEEccCC
Q 025336          141 GVDYCFECTGVPS-----------------------LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       141 ~~d~v~d~~g~~~-----------------------~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ++|.++.+.+...                       .+...+..+.++ |+++.+++..
T Consensus        81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~~  138 (238)
T PRK05786         81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSMS  138 (238)
T ss_pred             CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecch
Confidence            6899998887421                       134455566677 8898888654

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.71  E-value=0.00029  Score=54.46  Aligned_cols=80  Identities=15%  Similarity=0.264  Sum_probs=59.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCC----ceEeCCCCCCCchHHHHHHHhhCCC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGM----TDFINPDDEPNKSISELVKGITHGM-G  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~----~~v~~~~~~~~~~~~~~i~~~~~~~-~  141 (254)
                      +++.++|+|+ +++|.+.++.....|+ +|+.+.+..++++.+. +++.    ...+|-.+  ..+....+..+.... .
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD--~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD--RAAVEAAIEALPEEFGR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC--HHHHHHHHHHHHHhhCc
Confidence            3567899997 8999999999999999 9999999999998764 5662    22445554  234455555554433 5


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+.++..|.
T Consensus        82 iDiLvNNAGl   91 (246)
T COG4221          82 IDILVNNAGL   91 (246)
T ss_pred             ccEEEecCCC
Confidence            9999999985

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.70  E-value=0.00043  Score=56.72  Aligned_cols=101  Identities=23%  Similarity=0.225  Sum_probs=71.2

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ....++++++||.+|+| .|..++.+++..+. ..|++++.+++..+.+++    .|.+.+....    .+..+.+.   
T Consensus        74 ~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~----gD~~~~~~---  145 (322)
T PRK13943         74 EWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC----GDGYYGVP---  145 (322)
T ss_pred             HhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe----CChhhccc---
Confidence            55678899999999987 49999999998764 369999999887766653    5654432222    22222221   


Q ss_pred             CCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          138 HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       138 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ....||+|+.+.+.........+.++++ |+++..
T Consensus       146 ~~~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~  179 (322)
T PRK13943        146 EFAPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  179 (322)
T ss_pred             ccCCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence            1237999999888665556788899999 987763

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.67  E-value=0.0013  Score=52.88  Aligned_cols=78  Identities=18%  Similarity=0.294  Sum_probs=54.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhh-CCCCccEEEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGIT-HGMGVDYCFE  147 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~-~~~~~d~v~d  147 (254)
                      .++||+|+ |++|...++.+...|+ +|+++++++++.+.+...+...+ .|..+  .+++.+.+.+.. ...++|++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~vi~   78 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND--GAALARLAEELEAEHGGLDVLIN   78 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence            36899987 9999999999999999 99999898877776665554332 35443  133333333332 2237999999


Q ss_pred             cCCC
Q 025336          148 CTGV  151 (254)
Q Consensus       148 ~~g~  151 (254)
                      +.|.
T Consensus        79 ~ag~   82 (274)
T PRK05693         79 NAGY   82 (274)
T ss_pred             CCCC
Confidence            9983

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.66  E-value=0.0014  Score=49.59  Aligned_cols=101  Identities=20%  Similarity=0.191  Sum_probs=63.9

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ...++++++||.+|+|+-+ .+..+++.. +..+|++++.++..    +..+...+ .+..+   .+..+.+.+...+.+
T Consensus        27 ~~~i~~g~~VLDiG~GtG~-~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~---~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGG-WSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD---EEVLNKIRERVGDDK   98 (188)
T ss_pred             hcccCCCCEEEEecCCCCH-HHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC---hhHHHHHHHHhCCCC
Confidence            4567899999999987634 444555543 43489999999754    11233221 23333   344455555555558


Q ss_pred             ccEEEE-cC----CC------------hhHHHHHHHHcccCCcEEEEEc
Q 025336          142 VDYCFE-CT----GV------------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       142 ~d~v~d-~~----g~------------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      +|+|+. ..    |.            ...+..+.+.++++ |+++...
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~  146 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV  146 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence            999994 32    21            23677888999999 9988754

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.64  E-value=0.00023  Score=48.82  Aligned_cols=93  Identities=24%  Similarity=0.297  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCcccHHHHHhc----CC-ceE-eCCCCCCCchHHHHHHHhhCCCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGAR-MQGAAKIIGIDKNPWKKEKGEAF----GM-TDF-INPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~-~~g~~~v~~v~~~~~~~~~~~~~----g~-~~v-~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      |+.+||-+|+|. |..++.+++ ..++ +|++++.+++..+.+++.    +. +.+ +..     .++ .  .......+
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-----~d~-~--~~~~~~~~   70 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQ-----GDA-E--FDPDFLEP   70 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE-----SCC-H--GGTTTSSC
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE-----Ccc-c--cCcccCCC
Confidence            678999999875 888888888 5677 999999999988887652    21 222 211     222 1  11222347


Q ss_pred             ccEEEEcC-CC---h------hHHHHHHHHcccCCcEEEEE
Q 025336          142 VDYCFECT-GV---P------SLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       142 ~d~v~d~~-g~---~------~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ||+|+... ..   .      ..++.+.+.++|+ |++++-
T Consensus        71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi~  110 (112)
T PF12847_consen   71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVIN  110 (112)
T ss_dssp             EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             CCEEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            99999766 21   1      1377888899999 998763

...

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.59  E-value=0.0007  Score=53.56  Aligned_cols=80  Identities=18%  Similarity=0.236  Sum_probs=57.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-----cCCc-eE--eCCCCCCCchHHHHHH-Hhh
Q 025336           68 EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-----FGMT-DF--INPDDEPNKSISELVK-GIT  137 (254)
Q Consensus        68 ~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----~g~~-~v--~~~~~~~~~~~~~~i~-~~~  137 (254)
                      ..+.++||+|+ +++|...+..+...|. +++.+.|++++++.+.+     .|.. .+  +|..+   .+-...+. ++.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~---~~~~~~l~~~l~   79 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSD---PEALERLEDELK   79 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC---hhHHHHHHHHHH
Confidence            45789999997 8999999999999999 99999999999987643     2221 12  35544   44444443 333


Q ss_pred             -CCCCccEEEEcCCC
Q 025336          138 -HGMGVDYCFECTGV  151 (254)
Q Consensus       138 -~~~~~d~v~d~~g~  151 (254)
                       .+..+|+.+++.|-
T Consensus        80 ~~~~~IdvLVNNAG~   94 (265)
T COG0300          80 ERGGPIDVLVNNAGF   94 (265)
T ss_pred             hcCCcccEEEECCCc
Confidence             23489999999984

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.57  E-value=0.002  Score=48.32  Aligned_cols=93  Identities=20%  Similarity=0.274  Sum_probs=62.8

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           73 VAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        73 vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      |+|+|+ |.+|..+++.+...|. +|++..+++++.+.  ..+.+.+ .|..+   .   +.+.+...  ++|.||++++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~~~d~~d---~---~~~~~al~--~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEIIQGDLFD---P---DSVKAALK--GADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEEESCTTC---H---HHHHHHHT--TSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccceeeehh---h---hhhhhhhh--hcchhhhhhh
Confidence            789997 9999999999999998 99999999988776  3343332 23333   2   22222222  8999999998


Q ss_pred             C----hhHHHHHHHHcccC-CcEEEEEccCC
Q 025336          151 V----PSLLSEALETTKVG-KGKVIVIGVGV  176 (254)
Q Consensus       151 ~----~~~~~~~~~~l~~~-~G~~v~~g~~~  176 (254)
                      .    .......++.++.. -.+++.++...
T Consensus        70 ~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   70 PPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             STTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             hhcccccccccccccccccccccceeeeccc
Confidence            4    22355666665544 13777766543

...

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.54  E-value=0.0008  Score=57.45  Aligned_cols=78  Identities=19%  Similarity=0.264  Sum_probs=57.1

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHH-HHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKE-KGEAFGMTDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      ..+..++++|+|+|+|.+|..+++.++..|+.+|++++++.++.+ +++.+|.. .++.     .+..+.+      .++
T Consensus       174 ~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~-----~~l~~~l------~~a  241 (417)
T TIGR01035       174 IFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AVKF-----EDLEEYL------AEA  241 (417)
T ss_pred             HhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-EeeH-----HHHHHHH------hhC
Confidence            334457899999999999999999999999668999999887754 56677754 2321     2222222      179


Q ss_pred             cEEEEcCCChh
Q 025336          143 DYCFECTGVPS  153 (254)
Q Consensus       143 d~v~d~~g~~~  153 (254)
                      |+||+|++.+.
T Consensus       242 DvVi~aT~s~~  252 (417)
T TIGR01035       242 DIVISSTGAPH  252 (417)
T ss_pred             CEEEECCCCCC
Confidence            99999998654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.53  E-value=0.0014  Score=54.78  Aligned_cols=96  Identities=16%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC---C-ceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG---M-TDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g---~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .+|||+|+|.+|+.+++.+.+.|-.+|++++++.++.+.+....   . ...+|-.+  .+.+.+.|+      ++|+||
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d--~~al~~li~------~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD--VDALVALIK------DFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC--hHHHHHHHh------cCCEEE
Confidence            47999999999999999988888449999999999888886653   2 23455444  123333332      559999


Q ss_pred             EcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          147 ECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++.........+-.+++.+ =.+++....
T Consensus        74 n~~p~~~~~~i~ka~i~~g-v~yvDts~~  101 (389)
T COG1748          74 NAAPPFVDLTILKACIKTG-VDYVDTSYY  101 (389)
T ss_pred             EeCCchhhHHHHHHHHHhC-CCEEEcccC
Confidence            9999874443333455554 456555544

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.52  E-value=0.00075  Score=50.69  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=56.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC---ceEeCCCCCCCch----HHHHHHHhhCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM---TDFINPDDEPNKS----ISELVKGITHGM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~---~~v~~~~~~~~~~----~~~~i~~~~~~~  140 (254)
                      -|.+|||.|+ +++|+..++-...+|- +||+..+++++++.++..-.   ..+.|..+   .+    +++++.+.  -.
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d---~~~~~~lvewLkk~--~P   77 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD---RDSRRELVEWLKKE--YP   77 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc---hhhHHHHHHHHHhh--CC
Confidence            3679999965 8999999999999999 89999999999999876432   23444444   33    44444432  23


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ..++++++.|-
T Consensus        78 ~lNvliNNAGI   88 (245)
T COG3967          78 NLNVLINNAGI   88 (245)
T ss_pred             chheeeecccc
Confidence            78999998874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.00083  Score=52.20  Aligned_cols=105  Identities=22%  Similarity=0.239  Sum_probs=76.2

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      .+.++.+|++|+=.|.|+ |.+++-+|+..|. ++|+..+..++..+.+++    +|....+....   .|..+.    .
T Consensus        88 ~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~---~Dv~~~----~  159 (256)
T COG2519          88 ARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL---GDVREG----I  159 (256)
T ss_pred             HHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe---cccccc----c
Confidence            578899999999888775 8888999998875 699999999988888765    34332222222   333222    2


Q ss_pred             CCCCccEEE-EcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          138 HGMGVDYCF-ECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       138 ~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .+..||.+| |.-..-..++.+.+.|.++ |.++.+...-
T Consensus       160 ~~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P~v  198 (256)
T COG2519         160 DEEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSPTV  198 (256)
T ss_pred             cccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcCCH
Confidence            333899888 5555556789999999999 9999886543

>PRK12742 oxidoreductase; Provisional

Probab=97.49  E-value=0.0036  Score=48.95  Aligned_cols=77  Identities=21%  Similarity=0.243  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-CcccHHHH-HhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-NPWKKEKG-EAFGMTDF-INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~~-~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+.+ ++++.+.+ .+.+...+ .|..+  ...+.+.+.+   ..++|+
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~---~~~id~   78 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD--RDAVIDVVRK---SGALDI   78 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC--HHHHHHHHHH---hCCCcE
Confidence            4678999986 9999999999999999 7877654 34444433 34454332 23332  1223333322   237999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        79 li~~ag~   85 (237)
T PRK12742         79 LVVNAGI   85 (237)
T ss_pred             EEECCCC
Confidence            9999874

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.48  E-value=0.00036  Score=53.88  Aligned_cols=101  Identities=23%  Similarity=0.345  Sum_probs=68.3

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELV  133 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i  133 (254)
                      +.....++++++||-+|+|. |..+..+++..+. .+|++++.+++-.+.+++    .|..+  ++..+      ...  
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd------~~~--  138 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD------GTL--  138 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC------ccc--
Confidence            33567789999999999874 7777888887663 389999999988877754    34322  22111      100  


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                       .......||.|+-+...+.....+.+.|+++ |+++..
T Consensus       139 -~~~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~  175 (212)
T PRK13942        139 -GYEENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP  175 (212)
T ss_pred             -CCCcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence             0112348999986554444567888899999 998764

>PRK04148 hypothetical protein; Provisional

Probab=97.48  E-value=0.00083  Score=47.35  Aligned_cols=96  Identities=21%  Similarity=0.237  Sum_probs=62.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ...++.+++++|.| .|...++.+...|. +|+++|.+++..+.+++.+.+.+.+.--  ..+.  .+-     +++|++
T Consensus        13 ~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf--~p~~--~~y-----~~a~li   81 (134)
T PRK04148         13 EKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLF--NPNL--EIY-----KNAKLI   81 (134)
T ss_pred             ccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCC--CCCH--HHH-----hcCCEE
Confidence            33456789999998 78756666668899 9999999999999998887654442211  0111  111     288899


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      +..-..++..+.+++..+.-+..++..
T Consensus        82 ysirpp~el~~~~~~la~~~~~~~~i~  108 (134)
T PRK04148         82 YSIRPPRDLQPFILELAKKINVPLIIK  108 (134)
T ss_pred             EEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            888887765555555544431344443

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.0015  Score=52.68  Aligned_cols=78  Identities=19%  Similarity=0.279  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHh---hCCCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGI---THGMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~---~~~~~~d  143 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+...+...+ .|..+  .+++...+.+.   .++ .+|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~~g-~id   78 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE--PESIAALVAQVLELSGG-RLD   78 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC--HHHHHHHHHHHHHHcCC-Ccc
Confidence            3568999987 9999999998888999 99999999888877766554432 34443  12233333332   223 799


Q ss_pred             EEEEcCC
Q 025336          144 YCFECTG  150 (254)
Q Consensus       144 ~v~d~~g  150 (254)
                      +++++.|
T Consensus        79 ~li~~Ag   85 (277)
T PRK05993         79 ALFNNGA   85 (277)
T ss_pred             EEEECCC
Confidence            9999876

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.44  E-value=0.0003  Score=53.97  Aligned_cols=101  Identities=23%  Similarity=0.415  Sum_probs=65.8

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCcccHHHHHh----cCCceE-eCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAA-KIIGIDKNPWKKEKGEA----FGMTDF-INPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~-~v~~v~~~~~~~~~~~~----~g~~~v-~~~~~~~~~~~~~~i~~  135 (254)
                      .+...+++|++||-+|+|+ |..++-+++..|.. +|+.++..++-.+.+++    ++.+.+ +...+     ...   .
T Consensus        65 l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd-----g~~---g  135 (209)
T PF01135_consen   65 LEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD-----GSE---G  135 (209)
T ss_dssp             HHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES------GGG---T
T ss_pred             HHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc-----hhh---c
Confidence            3677799999999999875 78888888877753 68999988876665543    455432 21111     111   1


Q ss_pred             hhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          136 ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      +....+||.++-+.+-+..-...++.|+++ |++|..
T Consensus       136 ~~~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~p  171 (209)
T PF01135_consen  136 WPEEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAP  171 (209)
T ss_dssp             TGGG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEE
T ss_pred             cccCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEE
Confidence            122338999998887765557888899999 999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.42  E-value=0.0014  Score=49.06  Aligned_cols=91  Identities=24%  Similarity=0.453  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|+..++.++.+|+ +|++.+++....+.....+..  .       .++.+.+.      ..|+++.+
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~--~-------~~l~ell~------~aDiv~~~   98 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVE--Y-------VSLDELLA------QADIVSLH   98 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEE--E-------SSHHHHHH------H-SEEEE-
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccce--e-------eehhhhcc------hhhhhhhh
Confidence            68999999999999999999999999 999999987766544444432  1       22333222      57888887


Q ss_pred             CCChh-----HHHHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPS-----LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~-----~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ....+     .-...+..++++ ..+|-++...
T Consensus        99 ~plt~~T~~li~~~~l~~mk~g-a~lvN~aRG~  130 (178)
T PF02826_consen   99 LPLTPETRGLINAEFLAKMKPG-AVLVNVARGE  130 (178)
T ss_dssp             SSSSTTTTTSBSHHHHHTSTTT-EEEEESSSGG
T ss_pred             hccccccceeeeeeeeeccccc-eEEEeccchh
Confidence            76321     124667788887 7777776643

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.41  E-value=0.0037  Score=47.32  Aligned_cols=78  Identities=15%  Similarity=0.235  Sum_probs=57.2

Q ss_pred             CCEEEEEc-C-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCC-ceEeCCCCCCCchH---HHHHHHhhCCCCc
Q 025336           70 GSSVAVLG-L-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGM-TDFINPDDEPNKSI---SELVKGITHGMGV  142 (254)
Q Consensus        70 ~~~vlI~G-~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~-~~v~~~~~~~~~~~---~~~i~~~~~~~~~  142 (254)
                      ...|||.| + |++|.+...-..+.|+ .|+++.++.++++.+. ++|- ..-+|..+  +++.   ...++..+.| ..
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~--~~~V~~v~~evr~~~~G-kl   82 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSK--PEEVVTVSGEVRANPDG-KL   82 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCC--hHHHHHHHHHHhhCCCC-ce
Confidence            46799997 4 9999999988889999 9999999999999876 6663 22234433  2333   3444554555 89


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+.++..|.
T Consensus        83 d~L~NNAG~   91 (289)
T KOG1209|consen   83 DLLYNNAGQ   91 (289)
T ss_pred             EEEEcCCCC
Confidence            999998875

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.39  E-value=0.0024  Score=44.45  Aligned_cols=100  Identities=18%  Similarity=0.327  Sum_probs=66.6

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHHHh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVKGI  136 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~  136 (254)
                      ....+.++++|+-+|+|. |..+..+++..+..+|++++.++...+.+++    ++...  ++..+-   ...   ....
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~---~~~~   85 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PEA---LEDS   85 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---ccc---Chhh
Confidence            445667788999999876 8888999987653489999999988877654    33322  221111   110   1111


Q ss_pred             hCCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEE
Q 025336          137 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  172 (254)
                       . ..+|+|+-....   ...++.+.+.++++ |+++.-
T Consensus        86 -~-~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~  121 (124)
T TIGR02469        86 -L-PEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLN  121 (124)
T ss_pred             -c-CCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEE
Confidence             1 389999975533   23678888999999 998764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.38  E-value=0.00019  Score=57.55  Aligned_cols=100  Identities=19%  Similarity=0.294  Sum_probs=62.1

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-e-EeCCCCCCCchHHHHH
Q 025336           60 AAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-D-FINPDDEPNKSISELV  133 (254)
Q Consensus        60 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~-v~~~~~~~~~~~~~~i  133 (254)
                      .+.++.++++|++||-+|+| -|..+..+++..|+ +|++++.+++..+++++    .|.. . -+..     .++    
T Consensus        53 ~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~-----~D~----  121 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRL-----QDY----  121 (273)
T ss_dssp             HHHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE-----S-G----
T ss_pred             HHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-----eec----
Confidence            34578899999999999987 47788889998899 99999999999988754    4421 1 1111     111    


Q ss_pred             HHhhCCCCccEEEE-----cCCC---hhHHHHHHHHcccCCcEEEEEc
Q 025336          134 KGITHGMGVDYCFE-----CTGV---PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       134 ~~~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      +++. + .||.|+.     .+|.   +..+..+-+.|+|+ |++++-.
T Consensus       122 ~~~~-~-~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~  166 (273)
T PF02353_consen  122 RDLP-G-KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQT  166 (273)
T ss_dssp             GG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEE
T ss_pred             cccC-C-CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEe
Confidence            1222 2 8898864     3443   23577888899999 9987543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0019  Score=50.26  Aligned_cols=77  Identities=19%  Similarity=0.347  Sum_probs=52.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE--eCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF--INPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .+++|+|+ |++|...++.+...|+ +|+++++++++.+.+++++...+  .|..+  .++..+.+..+.+ .++|+++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~-~~id~vi~   77 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND--PASLDQLLQRLQG-QRFDLLFV   77 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC--HHHHHHHHHHhhc-CCCCEEEE
Confidence            46899986 9999999988888899 99999998887766655542222  34333  2333333444433 38999998


Q ss_pred             cCCC
Q 025336          148 CTGV  151 (254)
Q Consensus       148 ~~g~  151 (254)
                      +.|.
T Consensus        78 ~ag~   81 (225)
T PRK08177         78 NAGI   81 (225)
T ss_pred             cCcc
Confidence            8764

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.36  E-value=0.0017  Score=49.87  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=66.7

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELV  133 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i  133 (254)
                      .....++++++||-+|+|. |..+..+++..+ ..+|++++.+++-.+.+++    .+..   .++..+      ..+.+
T Consensus        65 ~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d------~~~~~  137 (205)
T PRK13944         65 CELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD------GKRGL  137 (205)
T ss_pred             HHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC------cccCC
Confidence            3566788999999999865 777777787764 2389999999887766653    4432   222211      11111


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                         .....||.|+-+.......+.+.+.|+++ |+++..
T Consensus       138 ---~~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~  172 (205)
T PRK13944        138 ---EKHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP  172 (205)
T ss_pred             ---ccCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence               11238999997665444557888999999 998764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.35  E-value=0.0016  Score=56.82  Aligned_cols=73  Identities=18%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +.++++|+|+|.|.+|++++++++..|+ +|++.|..+++.+.+++.|... +....     ..+.+      ..+|+|+
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~-~~~~~-----~~~~l------~~~D~VV   75 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVAT-VSTSD-----AVQQI------ADYALVV   75 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEE-EcCcc-----hHhHh------hcCCEEE
Confidence            4578899999999999999999999999 9999987766666677777643 32211     11122      2679999


Q ss_pred             EcCCCh
Q 025336          147 ECTGVP  152 (254)
Q Consensus       147 d~~g~~  152 (254)
                      .+.|-+
T Consensus        76 ~SpGi~   81 (488)
T PRK03369         76 TSPGFR   81 (488)
T ss_pred             ECCCCC
Confidence            988864

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.35  E-value=0.00066  Score=52.55  Aligned_cols=102  Identities=21%  Similarity=0.256  Sum_probs=66.2

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHh
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      .....++++++||-+|+|. |..+..+++..+. .+|++++.+++-.+.+++    +|.+.+--..    .+....   .
T Consensus        70 ~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~----~d~~~~---~  141 (215)
T TIGR00080        70 TELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV----GDGTQG---W  141 (215)
T ss_pred             HHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE----CCcccC---C
Confidence            3566788999999998764 7777778877653 369999999887777654    4433221001    111111   1


Q ss_pred             hCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          137 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      .....||+|+-+...+...+.+.+.++++ |+++..
T Consensus       142 ~~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~  176 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP  176 (215)
T ss_pred             cccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence            12237999985544444567788999999 998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.35  E-value=0.0059  Score=47.62  Aligned_cols=94  Identities=14%  Similarity=0.178  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC----cccH--------HHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAA--KIIGIDKN----PWKK--------EKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~--~v~~v~~~----~~~~--------~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      -++.+++|+|+|+.|..++..+...|++  +++.++++    .++.        ++++.++... .   +   .++.+.+
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~---~---~~l~~~l   95 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T---G---GTLKEAL   95 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c---c---CCHHHHH
Confidence            4578999999999999999998999997  89999998    4442        2344433211 1   0   1233333


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                            .++|++|++++....-+..++.+.++ ..++.+..+
T Consensus        96 ------~~~dvlIgaT~~G~~~~~~l~~m~~~-~ivf~lsnP  130 (226)
T cd05311          96 ------KGADVFIGVSRPGVVKKEMIKKMAKD-PIVFALANP  130 (226)
T ss_pred             ------hcCCEEEeCCCCCCCCHHHHHhhCCC-CEEEEeCCC
Confidence                  15899999997331224666777776 666555533

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.35  E-value=0.0042  Score=54.58  Aligned_cols=47  Identities=21%  Similarity=0.191  Sum_probs=39.0

Q ss_pred             HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH
Q 025336           63 KEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG  110 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~  110 (254)
                      ...+.+.|.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+.+
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l  120 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL  120 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            3455668899999987 9999999999988999 899998988776543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.30  E-value=0.0017  Score=49.03  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      ++++.+||-+|+|. |..++.+++.....+|++++.+++..+.+++    .+.+. +....   .+..+    ......|
T Consensus        43 l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~---~d~~~----~~~~~~f  113 (187)
T PRK00107         43 LPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVH---GRAEE----FGQEEKF  113 (187)
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEe---ccHhh----CCCCCCc
Confidence            44588999998764 6666666664443399999999987777654    44432 11121   22222    2223479


Q ss_pred             cEEEEcC-CC-hhHHHHHHHHcccCCcEEEEEcc
Q 025336          143 DYCFECT-GV-PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       143 d~v~d~~-g~-~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      |+|+-.. +. +..++.+.+.++++ |+++.+-.
T Consensus       114 DlV~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~~  146 (187)
T PRK00107        114 DVVTSRAVASLSDLVELCLPLLKPG-GRFLALKG  146 (187)
T ss_pred             cEEEEccccCHHHHHHHHHHhcCCC-eEEEEEeC
Confidence            9999533 22 34677888999999 99987743

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.27  E-value=0.011  Score=47.88  Aligned_cols=97  Identities=13%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCcccHHHHHhcCC-ceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGAR-MQGAAKIIGIDKNPWKKEKGEAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~-~~g~~~v~~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ..+.|+|..+ +=+++.++..++ ..+..+++.+ .|+...++.+.+|. |.|+.|.+         |..+... .--++
T Consensus       135 ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vgl-TS~~N~~Fve~lg~Yd~V~~Yd~---------i~~l~~~-~~~v~  203 (314)
T PF11017_consen  135 GAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGL-TSARNVAFVESLGCYDEVLTYDD---------IDSLDAP-QPVVI  203 (314)
T ss_pred             CccEEEEeccchHHHHHHHHHhhccCCCceEEEE-ecCcchhhhhccCCceEEeehhh---------hhhccCC-CCEEE
Confidence            3456777765 777877777777 5555488888 77778889999994 78888875         4444333 66788


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +|..|+......+.+.+...=-..+.+|...
T Consensus       204 VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th  234 (314)
T PF11017_consen  204 VDFAGNGEVLAALHEHLGDNLVYSCLVGATH  234 (314)
T ss_pred             EECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence            8999998887888888876412456666544

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.26  E-value=0.0086  Score=45.60  Aligned_cols=103  Identities=19%  Similarity=0.275  Sum_probs=64.0

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~  135 (254)
                      .....++++++||=+|+|. |..++.+++.....+|++++.+++..+.+++    ++...  ++.      .+..+.+..
T Consensus        33 ~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~------~d~~~~~~~  105 (196)
T PRK07402         33 ISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE------GSAPECLAQ  105 (196)
T ss_pred             HHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE------CchHHHHhh
Confidence            4556778899998888753 5566666765433389999999988877754    45432  222      222222222


Q ss_pred             hhCCCCccEE-EEcCCC-hhHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYC-FECTGV-PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v-~d~~g~-~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +..  .+|.+ ++.... ...++.+.+.++++ |+++....
T Consensus       106 ~~~--~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~  143 (196)
T PRK07402        106 LAP--APDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATAS  143 (196)
T ss_pred             CCC--CCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEee
Confidence            221  34444 443222 34678888999999 99887754

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.26  E-value=0.001  Score=52.34  Aligned_cols=109  Identities=18%  Similarity=0.202  Sum_probs=68.4

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCc-eE-eCCCCCCCchHHHH
Q 025336           60 AAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMT-DF-INPDDEPNKSISEL  132 (254)
Q Consensus        60 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~-~v-~~~~~~~~~~~~~~  132 (254)
                      .+....+++||++|+=.|.|+ |.+...+++..|. ++|+..+..+++.+.+++    +|.. .+ +..++     ..+.
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~D-----v~~~  104 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRD-----VCEE  104 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES------GGCG
T ss_pred             HHHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecc-----eecc
Confidence            344678899999999888664 7778888887763 489999999998888764    4542 22 22222     2110


Q ss_pred             HHHhhCCCCccEEE-EcCCChhHHHHHHHHc-ccCCcEEEEEccC
Q 025336          133 VKGITHGMGVDYCF-ECTGVPSLLSEALETT-KVGKGKVIVIGVG  175 (254)
Q Consensus       133 i~~~~~~~~~d~v~-d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~  175 (254)
                      -....-...+|.|| |--..-..++.+.+.| +++ |+++.+...
T Consensus       105 g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP~  148 (247)
T PF08704_consen  105 GFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSPC  148 (247)
T ss_dssp             --STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEESS
T ss_pred             cccccccCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECCC
Confidence            00000123789998 5444445789999999 898 999998644

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0025  Score=50.13  Aligned_cols=77  Identities=18%  Similarity=0.285  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCce-EeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTD-FINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ++.+++|+|+ |.+|..+++.+...|+ +|++++++.++.+.+.+ .+... ..|..+   .+....+.+.  ..++|++
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~--~~~~d~v   81 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD---DAAIRAALAA--AGAFDGL   81 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC---HHHHHHHHHH--hCCCCEE
Confidence            4678999987 8999999999999999 89999888776655433 34332 234443   3322322222  2379999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      |++.|.
T Consensus        82 i~~ag~   87 (245)
T PRK07060         82 VNCAGI   87 (245)
T ss_pred             EECCCC
Confidence            998874

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.0082  Score=47.29  Aligned_cols=102  Identities=20%  Similarity=0.180  Sum_probs=61.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc-cHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW-KKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~-~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|..+++.+...|. +|+++.++.+ +.+.+    +..+...   ..|..+  .++....+.+... 
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD--EESVAALMDTAREE   81 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHh
Confidence            3578999987 9999999998888999 8888877643 22222    2223221   124443  2333333333222 


Q ss_pred             CCCccEEEEcCCCh-------------------hHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCFECTGVP-------------------SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~d~~g~~-------------------~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ..++|+++.+.+..                   ..++.+.+.+... |+++.+++
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence            12689999877642                   1234455555566 88888765

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.0016  Score=53.85  Aligned_cols=80  Identities=18%  Similarity=0.294  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+.+++++++.+.+    ++.|.+. +  .|..+  .++..+.+.+.. ..
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   82 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD--ADQVKALATQAASFG   82 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHhc
Confidence            4678999987 8999999999999999 899999988776543    3345432 1  24433  122222222221 11


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus        83 g~iD~lVnnAG~   94 (330)
T PRK06139         83 GRIDVWVNNVGV   94 (330)
T ss_pred             CCCCEEEECCCc
Confidence            379999999873

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.24  E-value=0.0046  Score=45.09  Aligned_cols=92  Identities=23%  Similarity=0.325  Sum_probs=60.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .-.|.+++|.|-|-+|.-.++.++.+|+ +|++++.++-+.-.+..-|.. +.        +..+    ..  ...|+++
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v~--------~~~~----a~--~~adi~v   83 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-VM--------TLEE----AL--RDADIFV   83 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-EE---------HHH----HT--TT-SEEE
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-ec--------CHHH----HH--hhCCEEE
Confidence            3478999999999999999999999999 999999999777666666654 22        1222    21  2679999


Q ss_pred             EcCCChhH-HHHHHHHcccCCcEEEEEccC
Q 025336          147 ECTGVPSL-LSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       147 d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      -++|.... -..-++.++++ ..+...|..
T Consensus        84 taTG~~~vi~~e~~~~mkdg-ail~n~Gh~  112 (162)
T PF00670_consen   84 TATGNKDVITGEHFRQMKDG-AILANAGHF  112 (162)
T ss_dssp             E-SSSSSSB-HHHHHHS-TT-EEEEESSSS
T ss_pred             ECCCCccccCHHHHHHhcCC-eEEeccCcC
Confidence            99998654 35778888887 555555543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.23  E-value=0.0064  Score=46.56  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .+.+|+|.|+|++|..+++.+...|.++++.+|.+.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            457899999999999999999999998999998773

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.23  E-value=0.0045  Score=50.06  Aligned_cols=133  Identities=24%  Similarity=0.365  Sum_probs=74.6

Q ss_pred             ceeeEEecCCceEEcCCCCCccccccccchhhhhh--HHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           24 WSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGF--GAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        24 ~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~--~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      |.+|-.-+...++.+.+++.|-.+.    .-.|..  .+|...  .+++++||=+|.|+ |.+++..+| +|+++|+++|
T Consensus       120 w~~~~~~~~~~~I~idPg~AFGTG~----H~TT~lcl~~l~~~--~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~D  191 (295)
T PF06325_consen  120 WEEYPEPPDEIVIEIDPGMAFGTGH----HPTTRLCLELLEKY--VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAID  191 (295)
T ss_dssp             T----SSTTSEEEEESTTSSS-SSH----CHHHHHHHHHHHHH--SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEE
T ss_pred             CcccCCCCCcEEEEECCCCcccCCC----CHHHHHHHHHHHHh--ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEec
Confidence            6666332445567777776665543    222221  122222  56789999998653 555554444 5998999999


Q ss_pred             CCcccHHHHHh----cCC-ceE-eCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChh---HHHHHHHHcccCCcEEEEE
Q 025336          102 KNPWKKEKGEA----FGM-TDF-INPDDEPNKSISELVKGITHGMGVDYCFECTGVPS---LLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       102 ~~~~~~~~~~~----~g~-~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~  172 (254)
                      .++.-.+.+++    .|. +.+ +...    .+.       .. ..||+|+-.+-...   ..+.+.+.++++ |.+++.
T Consensus       192 iDp~Av~~a~~N~~~N~~~~~~~v~~~----~~~-------~~-~~~dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlS  258 (295)
T PF06325_consen  192 IDPLAVEAARENAELNGVEDRIEVSLS----EDL-------VE-GKFDLVVANILADVLLELAPDIASLLKPG-GYLILS  258 (295)
T ss_dssp             SSCHHHHHHHHHHHHTT-TTCEEESCT----SCT-------CC-S-EEEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCeeEEEEEe----ccc-------cc-ccCCEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEc
Confidence            99887666654    332 122 2111    111       11 38999997766542   344556678999 999999


Q ss_pred             ccCCC
Q 025336          173 GVGVD  177 (254)
Q Consensus       173 g~~~~  177 (254)
                      |....
T Consensus       259 GIl~~  263 (295)
T PF06325_consen  259 GILEE  263 (295)
T ss_dssp             EEEGG
T ss_pred             cccHH
Confidence            88765

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.22  E-value=0.0014  Score=52.29  Aligned_cols=105  Identities=16%  Similarity=0.240  Sum_probs=76.1

Q ss_pred             hhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-e--E--eCCCCCCC
Q 025336           56 TGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-D--F--INPDDEPN  126 (254)
Q Consensus        56 ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~--v--~~~~~~~~  126 (254)
                      .++..+....++++|++||=+|.|- |.+++-+|+..|+ +|++++-|++..+.+++    .|-. +  +  -|+++   
T Consensus        59 ~k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd---  133 (283)
T COG2230          59 AKLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD---  133 (283)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc---
Confidence            3555566889999999999999875 8888999999999 99999999998888765    4432 1  1  13332   


Q ss_pred             chHHHHHHHhhCCCCccEEE-----EcCCC---hhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          127 KSISELVKGITHGMGVDYCF-----ECTGV---PSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                               +. + .||-|+     +.+|.   +..+..+-+.|.++ |++..-.....
T Consensus       134 ---------~~-e-~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~  180 (283)
T COG2230         134 ---------FE-E-PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGP  180 (283)
T ss_pred             ---------cc-c-ccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCC
Confidence                     21 1 477664     34454   33577888899999 99987766544

>PRK00811 spermidine synthase; Provisional

Probab=97.21  E-value=0.0022  Score=51.79  Aligned_cols=98  Identities=12%  Similarity=0.040  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC--------ceEeCCCCCCCchHHHHHHHhhCCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM--------TDFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~--------~~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      ..++||++|+|. |..+..++++.+..+|++++.+++-.+.++++-.        +.-+....   .|....+.. . ..
T Consensus        76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~---~Da~~~l~~-~-~~  149 (283)
T PRK00811         76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI---GDGIKFVAE-T-EN  149 (283)
T ss_pred             CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE---CchHHHHhh-C-CC
Confidence            457899998765 7777778887776699999999998888876321        10000111   334444443 2 33


Q ss_pred             CccEEEEcC-CC---------hhHHHHHHHHcccCCcEEEEEc
Q 025336          141 GVDYCFECT-GV---------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       141 ~~d~v~d~~-g~---------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .||+|+-.. ..         ...+..+.+.|+++ |.++...
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~~  191 (283)
T PRK00811        150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQS  191 (283)
T ss_pred             cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEeC
Confidence            899999432 11         12356778899999 9988753

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.20  E-value=0.011  Score=47.26  Aligned_cols=106  Identities=22%  Similarity=0.317  Sum_probs=69.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---Ee--CCCCCCCchHHHHHHHhh-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FI--NPDDEPNKSISELVKGIT-  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~--~~~~~~~~~~~~~i~~~~-  137 (254)
                      .+..|+|+|+ +++|..++.-.-..|+ +++.+.+..++++.+    ++.++..   ++  |-.+  .++..+.+.+.. 
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~--~~~~~~~~~~~~~   87 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD--EESVKKFVEWAIR   87 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC--HHHHHHHHHHHHH
Confidence            4788999997 8999988887788899 777777888877776    3344322   22  3332  234444443322 


Q ss_pred             CCCCccEEEEcCCChh-------------------------HHHHHHHHcccCC-cEEEEEccCCC
Q 025336          138 HGMGVDYCFECTGVPS-------------------------LLSEALETTKVGK-GKVIVIGVGVD  177 (254)
Q Consensus       138 ~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~-G~~v~~g~~~~  177 (254)
                      .-.++|+.+++.|-..                         ....++..+++.+ |+++.+++..+
T Consensus        88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG  153 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAG  153 (282)
T ss_pred             hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence            2348999999888411                         2345556665443 89999998776

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.18  E-value=0.0056  Score=47.08  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCce-EeCCCCCCCchHHHHHHHhh
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMTD-FINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ..+.+...+||=+|.+ +|..++.+|..+. -.+++.++.++++.+.+++    .|.+. +.-...   .+..+.+.+..
T Consensus        54 L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~---gdal~~l~~~~  129 (219)
T COG4122          54 LARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG---GDALDVLSRLL  129 (219)
T ss_pred             HHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec---CcHHHHHHhcc
Confidence            4455677889988853 4777788888666 3489999999999999876    46543 221121   25666666532


Q ss_pred             CCCCccEEE-EcCC--ChhHHHHHHHHcccCCcEEEEE
Q 025336          138 HGMGVDYCF-ECTG--VPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       138 ~~~~~d~v~-d~~g--~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      . ..||+|| |+--  .+..++.+++.++++ |.++.=
T Consensus       130 ~-~~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~D  165 (219)
T COG4122         130 D-GSFDLVFIDADKADYPEYLERALPLLRPG-GLIVAD  165 (219)
T ss_pred             C-CCccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEe
Confidence            3 3899999 5543  345789999999998 877653

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=97.18  E-value=0.0048  Score=47.64  Aligned_cols=104  Identities=20%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc------cHHHH--HhcC---------------C-ceEeCCCCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW------KKEKG--EAFG---------------M-TDFINPDDE  124 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~------~~~~~--~~~g---------------~-~~v~~~~~~  124 (254)
                      +.++|+|.|.|++|.+++..+.+.|++++..+|.+.-      |+-.+  ...|               + -.|-..++ 
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~-  107 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND-  107 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh-
Confidence            4578999999999999999999999998888866431      11111  1122               1 11111111 


Q ss_pred             CCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHH-HcccCCcEEEEEccCCC
Q 025336          125 PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE-TTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       125 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~-~l~~~~G~~v~~g~~~~  177 (254)
                        .-..+.+.++... +||+|+||+..-..=-.++. +.+.+ =.++..+...+
T Consensus       108 --f~t~en~~~~~~~-~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~Gag~  157 (263)
T COG1179         108 --FITEENLEDLLSK-GFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMGAGG  157 (263)
T ss_pred             --hhCHhHHHHHhcC-CCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeeccccC
Confidence              1122334445454 99999999987533234444 44444 56666665443

>PLN02366 spermidine synthase

Probab=97.17  E-value=0.005  Score=50.25  Aligned_cols=103  Identities=15%  Similarity=0.043  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--eEeCCCCC--CCchHHHHHHHhhCCCCcc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--DFINPDDE--PNKSISELVKGITHGMGVD  143 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~v~~~~~~--~~~~~~~~i~~~~~~~~~d  143 (254)
                      ...++||++|+|. |.++..++++.+..+|++++.+++-.+.++++-..  ..++....  -..|....+++.. +..||
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-EGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-CCCCC
Confidence            4568899998765 66677888887766899999998888888774211  00100000  0034444444432 33799


Q ss_pred             EEEE-cCCC---------hhHHHHHHHHcccCCcEEEEEc
Q 025336          144 YCFE-CTGV---------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       144 ~v~d-~~g~---------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      +||- ....         ...++.+.+.|+++ |.++.-.
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~  206 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQA  206 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence            9984 3321         12467888899999 9987543

>PRK06182 short chain dehydrogenase; Validated

Probab=97.16  E-value=0.0045  Score=49.64  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhh-CCCCccEEE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGIT-HGMGVDYCF  146 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~-~~~~~d~v~  146 (254)
                      +.+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+...+... ..|..+  .+++...+.+.. ...++|+++
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~~~id~li   79 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD--EASIKAAVDTIIAEEGRIDVLV   79 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEEE
Confidence            578999987 9999999999888999 9999989887776655444432 234443  233333343332 123799999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      ++.|.
T Consensus        80 ~~ag~   84 (273)
T PRK06182         80 NNAGY   84 (273)
T ss_pred             ECCCc
Confidence            99874

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.14  E-value=0.0047  Score=50.60  Aligned_cols=92  Identities=26%  Similarity=0.427  Sum_probs=62.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      .+|.|+|+|.+|...+..++..|. .+|++.++++++.+.+++.|....+.      .+..+.+      ...|+|+.|+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~------~~~~~~~------~~aDvViiav   74 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT------TSAAEAV------KGADLVILCV   74 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec------CCHHHHh------cCCCEEEECC
Confidence            579999999999999998888884 37999999998888888877532111      1111111      2689999999


Q ss_pred             CChhH---HHHHHHHcccCCcEEEEEccC
Q 025336          150 GVPSL---LSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       150 g~~~~---~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      .....   +......++++ ..++.+|+.
T Consensus        75 p~~~~~~v~~~l~~~l~~~-~iv~dvgs~  102 (307)
T PRK07502         75 PVGASGAVAAEIAPHLKPG-AIVTDVGSV  102 (307)
T ss_pred             CHHHHHHHHHHHHhhCCCC-CEEEeCccc
Confidence            86422   33333455666 666666543

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0085  Score=47.18  Aligned_cols=80  Identities=19%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCc-eE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMT-DF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.+++|+|+ |.+|+..+..+...|+ +|+++++++++.+..    +..+.. .+  .|..+  .+++...+.+... .
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD--PASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999999999 898888887655543    222322 12  24433  1222222322221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|.++.+.|.
T Consensus        83 ~~id~vi~~ag~   94 (250)
T PRK12939         83 GGLDGLVNNAGI   94 (250)
T ss_pred             CCCCEEEECCCC
Confidence            379999999875

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0096  Score=46.53  Aligned_cols=80  Identities=18%  Similarity=0.224  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcC---CceEe--CCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFG---MTDFI--NPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g---~~~v~--~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      ++.+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +.+.   .-+.+  |..+  ..++...+.++.. ..
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRD--EADVQRAVDAIVAAFG   81 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            3678999987 9999999988888899 899998887665543 3332   11122  3332  2333333433321 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|++|++.|.
T Consensus        82 ~~d~vi~~ag~   92 (237)
T PRK07326         82 GLDVLIANAGV   92 (237)
T ss_pred             CCCEEEECCCC
Confidence            79999998764

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.11  E-value=0.0049  Score=48.35  Aligned_cols=104  Identities=17%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ...+..+..+||-+|.| +|..++.+++.++ ..+|+.++.+++..+.+++    .|...-+....   .+..+.+.++.
T Consensus        62 ~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~---gda~~~L~~l~  137 (234)
T PLN02781         62 MLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ---SDALSALDQLL  137 (234)
T ss_pred             HHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---ccHHHHHHHHH
Confidence            34556677899999864 3666666777653 3489999999988888765    34322222222   44445555442


Q ss_pred             C---CCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEE
Q 025336          138 H---GMGVDYCFECTGV---PSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       138 ~---~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~  171 (254)
                      .   ...||+||--...   ...++.+++.++++ |.++.
T Consensus       138 ~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~  176 (234)
T PLN02781        138 NNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAF  176 (234)
T ss_pred             hCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEE
Confidence            2   2479999944322   33577889999999 98765

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.10  E-value=0.0021  Score=51.59  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA  112 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~  112 (254)
                      ++.+++|+|+|+.+.+++.-++..|+.+++++.|+.+|.+.+.+
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            57899999999999999999999998789999999988777654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.10  E-value=0.0093  Score=44.14  Aligned_cols=98  Identities=20%  Similarity=0.246  Sum_probs=63.9

Q ss_pred             cccccchhhhhhHHHHHhcCCCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCC
Q 025336           47 ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGT-VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEP  125 (254)
Q Consensus        47 aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~-~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~  125 (254)
                      ....|+...++...+.....--.+.+|||+|+|. +|..++..++..|+ +|+++.++.                     
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~---------------------   78 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT---------------------   78 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc---------------------
Confidence            3445555445555444443345789999999986 59999999999999 787775542                     


Q ss_pred             CchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          126 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       126 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                       +++.+.+      ..+|+||.+++.+..+..  ..+.++ -.++.++.+.
T Consensus        79 -~~l~~~l------~~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~pr  119 (168)
T cd01080          79 -KNLKEHT------KQADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGINR  119 (168)
T ss_pred             -hhHHHHH------hhCCEEEEcCCCCceecH--HHccCC-eEEEEccCCC
Confidence             1222222      178999999998643332  245665 6777777654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0061  Score=48.41  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=51.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCCccc-HHH----HHhcCC-c-eE--eCCCCCCCchHHHHHHH
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDKNPWK-KEK----GEAFGM-T-DF--INPDDEPNKSISELVKG  135 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~~~~~-~~~----~~~~g~-~-~v--~~~~~~~~~~~~~~i~~  135 (254)
                      +..+.++||+|+ |++|..+++-+... |+ +|+++++++++ .+.    ++..+. . ++  .|..+  ..+..+.+++
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~--~~~~~~~~~~   81 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD--TDSHPKVIDA   81 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC--hHHHHHHHHH
Confidence            456778999987 99999999876666 47 89999888765 333    233332 1 22  23332  2333333444


Q ss_pred             hhCCCCccEEEEcCCC
Q 025336          136 ITHGMGVDYCFECTGV  151 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~  151 (254)
                      .....++|+++.+.|.
T Consensus        82 ~~~~g~id~li~~ag~   97 (253)
T PRK07904         82 AFAGGDVDVAIVAFGL   97 (253)
T ss_pred             HHhcCCCCEEEEeeec
Confidence            3332389999987764

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0038  Score=49.54  Aligned_cols=80  Identities=19%  Similarity=0.269  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce-EeCCCCCCCchHHHHHHHhh-CCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD-FINPDDEPNKSISELVKGIT-HGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~-v~~~~~~~~~~~~~~i~~~~-~~~~~d~  144 (254)
                      ++.+|+|+|+ |.+|..+++.+...|+ +|+++++++.+.+.. .+++... ..|..+  .+.....+.+.. ...++|.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD--EDAVNALFDTAAETYGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4789999987 9999999999999999 899998887765544 3344322 224433  122333333321 1137899


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++.+.|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998863

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0047  Score=49.34  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c----CCc-e--EeCCCCCCCchHHHHHHHhhCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F----GMT-D--FINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~----g~~-~--v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ++.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ +    +.. .  ..|..+  .++....+.+...-
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK--REDLERTVKELKNI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHHHhh
Confidence            4678999987 8999999999999999 89999888776654432 1    322 1  223333  23333334433222


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        84 g~iD~lv~nag~   95 (263)
T PRK08339         84 GEPDIFFFSTGG   95 (263)
T ss_pred             CCCcEEEECCCC
Confidence            379999998874

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.08  E-value=0.0042  Score=52.86  Aligned_cols=75  Identities=15%  Similarity=0.096  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      -.+.+|||+|+|.+|.+++..+...|+.+++++.++.++.+.+ ..++...++.+.         .+.+..  ..+|+||
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~---------~l~~~l--~~aDiVI  247 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLS---------ELPQLI--KKADIII  247 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHH---------HHHHHh--ccCCEEE
Confidence            3578899999999999999999999987899998987776554 445422233221         122211  2699999


Q ss_pred             EcCCChh
Q 025336          147 ECTGVPS  153 (254)
Q Consensus       147 d~~g~~~  153 (254)
                      +|++.+.
T Consensus       248 ~aT~a~~  254 (414)
T PRK13940        248 AAVNVLE  254 (414)
T ss_pred             ECcCCCC
Confidence            9999864

>PRK08017 oxidoreductase; Provisional

Probab=97.07  E-value=0.0046  Score=48.94  Aligned_cols=77  Identities=22%  Similarity=0.352  Sum_probs=53.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHH---HHHHhhCCCCccEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISE---LVKGITHGMGVDYC  145 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~---~i~~~~~~~~~d~v  145 (254)
                      +++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+++.+...+ .|..+  ...+.+   .+.+...+ .+|.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~-~~~~i   78 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD--PESVERAADEVIALTDN-RLYGL   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC--HHHHHHHHHHHHHhcCC-CCeEE
Confidence            47999997 9999999999999999 89999999888887777765433 34433  122222   22222223 78999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +.+.|.
T Consensus        79 i~~ag~   84 (256)
T PRK08017         79 FNNAGF   84 (256)
T ss_pred             EECCCC
Confidence            988763

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.07  E-value=0.0031  Score=46.81  Aligned_cols=104  Identities=21%  Similarity=0.250  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCC-C------------CchHHHHHHH
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDE-P------------NKSISELVKG  135 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~-~------------~~~~~~~i~~  135 (254)
                      ..+|+|+|+|.+|+.|+++++.+|+ +|+..+...++.+..+..+...+ +++.+. .            +......+.+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   98 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE   98 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence            3689999999999999999999999 99999999888888888776543 221110 0            1223333333


Q ss_pred             hhCCCCccEEEEcC--CChh----HHHHHHHHcccCCcEEEEEccCCC
Q 025336          136 ITHGMGVDYCFECT--GVPS----LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       136 ~~~~~~~d~v~d~~--g~~~----~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ...  .+|+++.+.  .+..    ..+..++.++++ ..++++....+
T Consensus        99 ~i~--~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D~g  143 (168)
T PF01262_consen   99 FIA--PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCDQG  143 (168)
T ss_dssp             HHH--H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGGGT
T ss_pred             HHh--hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEecCC
Confidence            222  678888533  1211    134667788887 77888765443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.07  E-value=0.016  Score=44.30  Aligned_cols=108  Identities=25%  Similarity=0.310  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +|.+++|+|.|.+|..+++.+...|+ +|++.+.++++.+.+++ +|+. .++..+            +.. ..+|+++-
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~------------l~~-~~~Dv~vp   91 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPEE------------IYS-VDADVFAP   91 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcchh------------hcc-ccCCEEEe
Confidence            67899999999999999999999999 99999988877766544 4643 333221            111 16899997


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEccCCCceee-ccH-HHHHhCCCEEEe
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVP-LNV-IALACGGRTLKG  196 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~-~~~~~~~~~i~g  196 (254)
                      |......-...++.++.   +++.-+. .. +++ ... ..+..+++.+.+
T Consensus        92 ~A~~~~I~~~~~~~l~~---~~v~~~A-N~-~~~~~~~~~~L~~~Gi~~~P  137 (200)
T cd01075          92 CALGGVINDDTIPQLKA---KAIAGAA-NN-QLADPRHGQMLHERGILYAP  137 (200)
T ss_pred             cccccccCHHHHHHcCC---CEEEECC-cC-ccCCHhHHHHHHHCCCEEeC
Confidence            66543344455566643   3333222 22 222 222 235567777766

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.06  E-value=0.01  Score=51.41  Aligned_cols=79  Identities=15%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHH-HHhcCCce-EeCCCCCCCchHHHHH-HHhhC-CCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW--KKEK-GEAFGMTD-FINPDDEPNKSISELV-KGITH-GMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~-~~~~g~~~-v~~~~~~~~~~~~~~i-~~~~~-~~~  141 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++.  +.+. .++++... .+|..+   .+..+.+ ..... ..+
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~---~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA---PDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHHHHhCCC
Confidence            5788999987 9999999999999999 8888877432  2222 23445432 235444   3333322 22221 227


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|++|++.|.
T Consensus       285 id~vi~~AG~  294 (450)
T PRK08261        285 LDIVVHNAGI  294 (450)
T ss_pred             CCEEEECCCc
Confidence            9999999883

>PRK00536 speE spermidine synthase; Provisional

Probab=97.05  E-value=0.0025  Score=50.55  Aligned_cols=98  Identities=8%  Similarity=-0.107  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--eEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--DFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .-++|||+|+|- |.++=.++|+. . +|+.++.+++-.+.++++-..  ..++...   -.+...+.+... ..||+||
T Consensus        72 ~pk~VLIiGGGD-Gg~~REvLkh~-~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR---v~l~~~~~~~~~-~~fDVII  144 (262)
T PRK00536         72 ELKEVLIVDGFD-LELAHQLFKYD-T-HVDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQLLDLDI-KKYDLII  144 (262)
T ss_pred             CCCeEEEEcCCc-hHHHHHHHCcC-C-eeEEEECCHHHHHHHHHHCHHHHHhhcCCC---EEEeehhhhccC-CcCCEEE
Confidence            347899998764 56677888876 3 899999999999888883211  1222222   222222333222 3899998


Q ss_pred             -EcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          147 -ECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       147 -d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       |+.-.+...+.+.++|+++ |.++.=+.
T Consensus       145 vDs~~~~~fy~~~~~~L~~~-Gi~v~Qs~  172 (262)
T PRK00536        145 CLQEPDIHKIDGLKRMLKED-GVFISVAK  172 (262)
T ss_pred             EcCCCChHHHHHHHHhcCCC-cEEEECCC
Confidence             7676666778999999999 98876543

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.01  Score=49.27  Aligned_cols=80  Identities=16%  Similarity=0.124  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.+++|+|+ |++|..+++.+...|+ +|+.+++++++.+.+    ++.|...   ..|..+  .+++...+.+... -
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d--~~~v~~~~~~~~~~~   83 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD--AEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC--HHHHHHHHHHHHHHC
Confidence            4678999987 9999999999989999 899998887766543    2345432   124443  1223333322211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus        84 g~iD~lInnAg~   95 (334)
T PRK07109         84 GPIDTWVNNAMV   95 (334)
T ss_pred             CCCCEEEECCCc
Confidence            279999999874

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.04  E-value=0.0053  Score=51.99  Aligned_cols=90  Identities=22%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCcccHHHHHh--cCC--c-eEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAA-KIIGIDKNPWKKEKGEA--FGM--T-DFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~-~v~~v~~~~~~~~~~~~--~g~--~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      |+|+|+|.+|..+++.+...+-. +|++.+++.++.+.+.+  .+.  . ..+|..+     ..+ +.++..  +.|+|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~-l~~~~~--~~dvVi   72 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND-----PES-LAELLR--GCDVVI   72 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT-----HHH-HHHHHT--TSSEEE
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC-----HHH-HHHHHh--cCCEEE
Confidence            78999999999999998877643 79999999999777653  221  1 2334333     222 444433  569999


Q ss_pred             EcCCChhHHHHHHHHcccCCcEEEE
Q 025336          147 ECTGVPSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~~~G~~v~  171 (254)
                      +|+|.......+..++..+ -.++.
T Consensus        73 n~~gp~~~~~v~~~~i~~g-~~yvD   96 (386)
T PF03435_consen   73 NCAGPFFGEPVARACIEAG-VHYVD   96 (386)
T ss_dssp             E-SSGGGHHHHHHHHHHHT--EEEE
T ss_pred             ECCccchhHHHHHHHHHhC-CCeec
Confidence            9999764444455556666 67777

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.015  Score=46.40  Aligned_cols=80  Identities=18%  Similarity=0.181  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCc-eE--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.+++|+|+ |++|...++.+...|+ +|+.++++.++.+.+ ++++.. .+  .|..+  .+++.+.+.+... ...+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD--DAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999986 9999999999989999 999999987765544 344432 12  23333  2333333333211 1278


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        82 d~lv~~ag~   90 (261)
T PRK08265         82 DILVNLACT   90 (261)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.04  E-value=0.0086  Score=48.42  Aligned_cols=42  Identities=19%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG  110 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~  110 (254)
                      .+.+|+|+|+|++|.+++..+...|++++++++++.++.+.+
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l  167 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAAL  167 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            467899999999999999999999998899999998877755

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.0079  Score=48.44  Aligned_cols=140  Identities=22%  Similarity=0.335  Sum_probs=81.7

Q ss_pred             cceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           23 TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWK-EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        23 ~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      +|.+|..-....++++.+++.|-.+    ....|.+. |.. ...++++.+||=+|.|+ |.+++.. ..+|+.+|+++|
T Consensus       120 sw~~~~~~~~~~~i~lDPGlAFGTG----~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIAa-~kLGA~~v~g~D  192 (300)
T COG2264         120 SWREYPEPSDELNIELDPGLAFGTG----THPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIAA-AKLGAKKVVGVD  192 (300)
T ss_pred             CCccCCCCCCceEEEEccccccCCC----CChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHHH-HHcCCceEEEec
Confidence            4666543334566777777766433    33333332 221 22345899999998764 5555543 456887899999


Q ss_pred             CCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCCh---hHHHHHHHHcccCCcEEEEEcc
Q 025336          102 KNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP---SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       102 ~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .++--.+.+++    .+.........   ...    .....+..||+|+-.+=..   ...+...+.++|+ |+++..|.
T Consensus       193 iDp~AV~aa~eNa~~N~v~~~~~~~~---~~~----~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpg-g~lIlSGI  264 (300)
T COG2264         193 IDPQAVEAARENARLNGVELLVQAKG---FLL----LEVPENGPFDVIVANILAEVLVELAPDIKRLLKPG-GRLILSGI  264 (300)
T ss_pred             CCHHHHHHHHHHHHHcCCchhhhccc---ccc----hhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCC-ceEEEEee
Confidence            99866655544    34332110110   111    1111224899999766322   2456777889999 99999997


Q ss_pred             CCC
Q 025336          175 GVD  177 (254)
Q Consensus       175 ~~~  177 (254)
                      ...
T Consensus       265 l~~  267 (300)
T COG2264         265 LED  267 (300)
T ss_pred             hHh
Confidence            654

>PRK04457 spermidine synthase; Provisional

Probab=97.01  E-value=0.0098  Score=47.50  Aligned_cols=94  Identities=13%  Similarity=0.134  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc-CC----c--eEeCCCCCCCchHHHHHHHhhCCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF-GM----T--DFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~-g~----~--~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      .+..+||++|.|+ |.++..+++.....++++++.+++-.+.++++ +.    .  .++.      .|..+.+.+. . .
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~------~Da~~~l~~~-~-~  135 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE------ADGAEYIAVH-R-H  135 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE------CCHHHHHHhC-C-C
Confidence            3457899999875 77888888876544899999999999888764 21    1  1221      3444445433 2 3


Q ss_pred             CccEEE-EcCCC---------hhHHHHHHHHcccCCcEEEE
Q 025336          141 GVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       141 ~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~  171 (254)
                      .||+|+ |....         ...+..+.+.|+++ |.++.
T Consensus       136 ~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvi  175 (262)
T PRK04457        136 STDVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVV  175 (262)
T ss_pred             CCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEE
Confidence            799998 44221         24678888999999 99887

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=97.01  E-value=0.007  Score=47.27  Aligned_cols=35  Identities=37%  Similarity=0.465  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ..+|+|+|.|++|..++..+-+.|..+++.+|.+.
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            46899999999999999999999999999998764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.00  E-value=0.0097  Score=46.48  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=74.9

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHh
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      +....++++|++||=+|+| +|-.+..+++..|..+|+++|.++..++.+++-    |... +..-.   .+.. .+. +
T Consensus        43 ~i~~~~~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~---~dAe-~LP-f  115 (238)
T COG2226          43 LISLLGIKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVV---GDAE-NLP-F  115 (238)
T ss_pred             HHHhhCCCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEE---echh-hCC-C
Confidence            4455566689999988776 499999999999877999999999998888652    2221 11111   1111 111 2


Q ss_pred             hCCCCccEEEEcCCC------hhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          137 THGMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                       ....||++.-+.|-      +..+..+.|.++|+ |+++++.....
T Consensus       116 -~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~p  160 (238)
T COG2226         116 -PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSKP  160 (238)
T ss_pred             -CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCCC
Confidence             23378888765552      34688999999999 99998887654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.99  E-value=0.017  Score=46.03  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .+.+|+|.|.|++|..++..+-..|.++++.+|.+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            467899999999999999999999988999988763

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.0043  Score=50.50  Aligned_cols=80  Identities=18%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCC--ce-E--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGM--TD-F--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~--~~-v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++.  .. .  .|..+  .++....+.++.. ..
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD--LAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC--HHHHHHHHHHHHHHcC
Confidence            4789999986 9999999999999999 899998988776654 34442  11 1  34433  1233333333321 13


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>PRK14967 putative methyltransferase; Provisional

Probab=96.97  E-value=0.024  Score=44.13  Aligned_cols=100  Identities=18%  Similarity=0.163  Sum_probs=64.4

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ....++++++||-.|+|. |..++.+++. +..+|++++.+++..+.+++    .+....+..     .++.+.+    .
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~-----~d~~~~~----~   98 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR-----GDWARAV----E   98 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE-----Cchhhhc----c
Confidence            345577889999999986 8888888875 55589999999988876654    343221211     2222211    2


Q ss_pred             CCCccEEEEcCCC---------------------------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCFECTGV---------------------------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~d~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...||+|+....-                           ...+..+.+.++++ |+++.+-.
T Consensus        99 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~~  160 (223)
T PRK14967         99 FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQS  160 (223)
T ss_pred             CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            2379999964210                           11345677889999 99886543

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.017  Score=45.44  Aligned_cols=80  Identities=19%  Similarity=0.289  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce-E--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD-F--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+ ++++... .  .|..+  ..+....+.++.. ..++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD--VAAQKALAQALAEAFGRL   81 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999987 9999999999999999 899998887665543 3445332 1  23322  1222222222211 1379


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        82 d~vi~~ag~   90 (249)
T PRK06500         82 DAVFINAGV   90 (249)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.97  E-value=0.0035  Score=47.79  Aligned_cols=99  Identities=21%  Similarity=0.311  Sum_probs=62.1

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ......++.+||-+|+|. |..+..+++. |. +|++++.+++-.+.+++.    +... +....   .++.    +..-
T Consensus        24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~---~d~~----~~~~   92 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAV---VDLN----NLTF   92 (197)
T ss_pred             HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEe---cChh----hCCc
Confidence            344455678899999875 7777778775 77 999999999877776542    2221 11111   1211    1111


Q ss_pred             CCCccEEEEcCC----C----hhHHHHHHHHcccCCcEEEEEc
Q 025336          139 GMGVDYCFECTG----V----PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       139 ~~~~d~v~d~~g----~----~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ...||+|+.+..    .    ...+..+.+.++++ |.++.+.
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~  134 (197)
T PRK11207         93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA  134 (197)
T ss_pred             CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            236999997533    1    23567788889999 9865543

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0056  Score=48.56  Aligned_cols=80  Identities=20%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC-ceEe--CCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM-TDFI--NPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~-~~v~--~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      .+.+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+..    .+. ..++  |..+  .+++...+.+.. ..
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD--YQSIKAAVAHAETEA   84 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHhc
Confidence            4789999986 9999999999998999 89999898877654432    121 1222  3332  233333333321 12


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        85 ~~~d~li~~ag~   96 (258)
T PRK06949         85 GTIDILVNNSGV   96 (258)
T ss_pred             CCCCEEEECCCC
Confidence            378999999883

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.96  E-value=0.0057  Score=43.56  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ..+|+|.|+|++|..++..+-..|.+++..+|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            46899999999999999999999998899987764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.95  E-value=0.007  Score=47.72  Aligned_cols=79  Identities=22%  Similarity=0.203  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|+.+++.+...|+ +|+.+++++++.+.+    +..+...   ..|..+  .....+.+.+... .
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD--EEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4778999987 9999999999999999 899998887665543    2234331   223332  1223333333222 1


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      .++|.+|++.|
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            37899999887

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.009  Score=46.31  Aligned_cols=77  Identities=21%  Similarity=0.302  Sum_probs=52.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+++|+|+ |.+|...++.+...|+ +|+.+++++++.+.++..+... ..|..+  ...+...+.++. +.++|.++.+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~-~~~~d~vi~~   77 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD--PASVAGLAWKLD-GEALDAAVYV   77 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC--HHHHHHHHHHhc-CCCCCEEEEC
Confidence            36889986 9999999988888899 8999988887777666555432 234443  122333333333 3379999998


Q ss_pred             CCC
Q 025336          149 TGV  151 (254)
Q Consensus       149 ~g~  151 (254)
                      .|.
T Consensus        78 ag~   80 (222)
T PRK06953         78 AGV   80 (222)
T ss_pred             CCc
Confidence            764

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.0058  Score=48.99  Aligned_cols=79  Identities=19%  Similarity=0.250  Sum_probs=52.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcC-Cce-EeCCCCCCCchHHHHHHHhhC-CCCccE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFG-MTD-FINPDDEPNKSISELVKGITH-GMGVDY  144 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g-~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~  144 (254)
                      +.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ +.++ ... ..|..+  ++++...+.+... ..++|+
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD--PASFAAFLDAVEADLGPIDV   81 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            568999987 9999999988888899 899988888776554 3344 221 234443  2333333333321 137999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        82 li~~ag~   88 (273)
T PRK07825         82 LVNNAGV   88 (273)
T ss_pred             EEECCCc
Confidence            9999874

>PLN02476 O-methyltransferase

Probab=96.93  E-value=0.0089  Score=47.85  Aligned_cols=104  Identities=14%  Similarity=0.265  Sum_probs=67.4

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ...+..+..+||-+|.+ +|..++.+++.++ -.+|+.++.+++..+.+++    .|...-+....   .+..+.+.++.
T Consensus       112 ~L~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~---GdA~e~L~~l~  187 (278)
T PLN02476        112 MLVQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH---GLAAESLKSMI  187 (278)
T ss_pred             HHHHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHH
Confidence            34455677899999863 3666677777654 2279999999998888864    45432222222   44555555442


Q ss_pred             ---CCCCccEEE-EcCCC--hhHHHHHHHHcccCCcEEEE
Q 025336          138 ---HGMGVDYCF-ECTGV--PSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       138 ---~~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~  171 (254)
                         ....||.|| |.--.  ...++.+++.++++ |.++.
T Consensus       188 ~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~  226 (278)
T PLN02476        188 QNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVM  226 (278)
T ss_pred             hcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEE
Confidence               123799998 44322  33578889999998 88765

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0075  Score=48.03  Aligned_cols=82  Identities=16%  Similarity=0.242  Sum_probs=53.1

Q ss_pred             CCCCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-----cCCceE----eCCCCCCCchHHHHHHH
Q 025336           67 VEKGSSVAVLGL-G-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-----FGMTDF----INPDDEPNKSISELVKG  135 (254)
Q Consensus        67 ~~~~~~vlI~G~-g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----~g~~~v----~~~~~~~~~~~~~~i~~  135 (254)
                      +.++.++||+|+ | ++|.++++.+...|+ +|+++++++++.+...+     ++...+    .|..+  .++....+.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~   90 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS--EAQVDALIDA   90 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC--HHHHHHHHHH
Confidence            345789999986 6 799999999999999 89998888766554322     343222    24433  1223333333


Q ss_pred             hh-CCCCccEEEEcCCC
Q 025336          136 IT-HGMGVDYCFECTGV  151 (254)
Q Consensus       136 ~~-~~~~~d~v~d~~g~  151 (254)
                      .. ...++|+++++.|.
T Consensus        91 ~~~~~g~id~li~~ag~  107 (262)
T PRK07831         91 AVERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            21 11379999999984

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.92  E-value=0.0094  Score=40.29  Aligned_cols=90  Identities=24%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      ++.+|||+|+|.+|..-++.+...|+ +|++++...   +..+  +.-... .     ..+.      ..-.++++|+-+
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~-~-----~~~~------~~l~~~~lV~~a   67 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLI-R-----REFE------EDLDGADLVFAA   67 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEE-E-----SS-G------GGCTTESEEEE-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHH-h-----hhHH------HHHhhheEEEec
Confidence            47899999999999999999999999 999997775   2222  111111 1     1121      112379999999


Q ss_pred             CCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          149 TGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       149 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .+.+..-+.+.+..+.. |.++.....+.
T Consensus        68 t~d~~~n~~i~~~a~~~-~i~vn~~D~p~   95 (103)
T PF13241_consen   68 TDDPELNEAIYADARAR-GILVNVVDDPE   95 (103)
T ss_dssp             SS-HHHHHHHHHHHHHT-TSEEEETT-CC
T ss_pred             CCCHHHHHHHHHHHhhC-CEEEEECCCcC
Confidence            99885555666666666 88877765443

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.91  E-value=0.0038  Score=54.03  Aligned_cols=95  Identities=12%  Similarity=0.122  Sum_probs=62.2

Q ss_pred             HhcCCCCCCEEE----EEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eEeCCCCCCCchHHHHHHHh
Q 025336           63 KEAEVEKGSSVA----VLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        63 ~~~~~~~~~~vl----I~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~  136 (254)
                      ...+.++|+.+|    |+|+ |++|.+++|+++..|+ +|+++...+.+....+..+.+ .++|.+.   ....+.+...
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~l~~~  102 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG---ITDPADLKAL  102 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC---CCCHHHHHHH
Confidence            345667888887    7764 9999999999999999 899886665544333333433 4555554   3333333322


Q ss_pred             hCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          137 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .               ..+...++.+.++ |+++.++....
T Consensus       103 ~---------------~~~~~~l~~l~~~-griv~i~s~~~  127 (450)
T PRK08261        103 Y---------------EFFHPVLRSLAPC-GRVVVLGRPPE  127 (450)
T ss_pred             H---------------HHHHHHHHhccCC-CEEEEEccccc
Confidence            1               2455667777887 88888876543

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0084  Score=47.76  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c--CC-ceE--eCCCCCCCchHHHHHHHhhCCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F--GM-TDF--INPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~--g~-~~v--~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.. +  +. ...  .|..+  ...............+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS--EAGREAVLARAREMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHhcCC
Confidence            4678999986 9999999998888999 89999998776655432 1  21 112  23332  1222222222222237


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|.++.+.|.
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            9999999875

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.0051  Score=48.90  Aligned_cols=81  Identities=16%  Similarity=0.150  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCc--e--EeCCCCCCCchHHHHHHHhhC-CC
Q 025336           68 EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMT--D--FINPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        68 ~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~--~--v~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      -++.++||+|+ |.+|..+++.+...|+ +|++++++++..+.+.+ ....  .  ..|..+  +..+.+.+.+... -.
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   85 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD--PAQVERVFDTAVERFG   85 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence            46789999987 9999999999999999 89999988766655433 2211  1  223333  1222222322211 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++.+.|.
T Consensus        86 ~~d~vi~~ag~   96 (264)
T PRK12829         86 GLDVLVNNAGI   96 (264)
T ss_pred             CCCEEEECCCC
Confidence            79999998875

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.90  E-value=0.016  Score=46.62  Aligned_cols=98  Identities=14%  Similarity=0.127  Sum_probs=67.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-e--EeCCCCC-CCchHHHHHHHhhCCCCccEEE
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-D--FINPDDE-PNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~--v~~~~~~-~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .+|||+|+|. |..+=.++|+....++++|+.+++=.+.++++-.. .  ..|.+-. -..|-.+.+++...  +||+||
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~--~fDvIi  154 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE--KFDVII  154 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC--cCCEEE
Confidence            5899998653 66677888888888999999999999998874211 0  0011110 01455666665433  899998


Q ss_pred             -EcCCC---------hhHHHHHHHHcccCCcEEEEE
Q 025336          147 -ECTGV---------PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       147 -d~~g~---------~~~~~~~~~~l~~~~G~~v~~  172 (254)
                       |+...         ...++.+-++|+++ |.++.-
T Consensus       155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q  189 (282)
T COG0421         155 VDSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQ  189 (282)
T ss_pred             EcCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEe
Confidence             66544         33578889999999 988876

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.89  E-value=0.005  Score=49.34  Aligned_cols=98  Identities=21%  Similarity=0.172  Sum_probs=70.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      .+|.|+|.|.+|.-++.+|..+|+ +|...+.+.+|+..+..+-...+-.... ++.++.+.+.      ..|++|.++=
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~s-t~~~iee~v~------~aDlvIgaVL  240 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYS-TPSNIEEAVK------KADLVIGAVL  240 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEc-CHHHHHHHhh------hccEEEEEEE
Confidence            458889999999999999999999 9999999999999887643333211111 1244444332      7899998662


Q ss_pred             --Chh----HHHHHHHHcccCCcEEEEEccCCC
Q 025336          151 --VPS----LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       151 --~~~----~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                        +..    ..++.++.+.|+ +.++++....+
T Consensus       241 IpgakaPkLvt~e~vk~MkpG-sVivDVAiDqG  272 (371)
T COG0686         241 IPGAKAPKLVTREMVKQMKPG-SVIVDVAIDQG  272 (371)
T ss_pred             ecCCCCceehhHHHHHhcCCC-cEEEEEEEcCC
Confidence              211    356789999999 99998876654

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.89  E-value=0.0051  Score=49.02  Aligned_cols=79  Identities=24%  Similarity=0.150  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc-CCc-eE--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF-GMT-DF--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~-g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.+++|+|+ |++|..+++.+...|+ +|++++++.++.+.+++. +.. ..  .|..+  ..+..+.+.+... -.++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS--LDDHKEAVARCVAAFGKI   80 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999987 8999999999999999 899998887766665443 321 11  23332  1223333333221 1378


Q ss_pred             cEEEEcCC
Q 025336          143 DYCFECTG  150 (254)
Q Consensus       143 d~v~d~~g  150 (254)
                      |+++++.|
T Consensus        81 d~li~~Ag   88 (262)
T TIGR03325        81 DCLIPNAG   88 (262)
T ss_pred             CEEEECCC
Confidence            99999886

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.87  E-value=0.0066  Score=47.85  Aligned_cols=80  Identities=19%  Similarity=0.198  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcC--Cc-eE--eCCCCCCCchHHHHHHHh-hCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFG--MT-DF--INPDDEPNKSISELVKGI-THGM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g--~~-~v--~~~~~~~~~~~~~~i~~~-~~~~  140 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. .+.  .. ..  .|..+  ..++...+.+. ....
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   80 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD--EADVEAAVAAALERFG   80 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            3568999987 9999999998888999 8999999987665542 222  11 11  23332  23333333322 1223


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|.+|.+.|.
T Consensus        81 ~~d~vi~~ag~   91 (251)
T PRK07231         81 SVDILVNNAGT   91 (251)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.87  E-value=0.0077  Score=47.41  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +.+|+|.|+|++|..+++.+...|.++++.+|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            47899999999999999999999998999887764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.86  E-value=0.0065  Score=52.80  Aligned_cols=77  Identities=26%  Similarity=0.401  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc---------------------ccHHHHHhcCCceEeCCCCCCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP---------------------WKKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~---------------------~~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      .+.+|+|+|+|+.|+.++..++..|. +|++.+..+                     ...+.++++|.+..++....  .
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~--~  216 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG--R  216 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC--C
Confidence            57899999999999999999999999 888887654                     23456677887655544320  1


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCCh
Q 025336          128 SISELVKGITHGMGVDYCFECTGVP  152 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~  152 (254)
                      ++  .+.+..  .++|.+|.++|..
T Consensus       217 ~~--~~~~~~--~~~D~vilAtGa~  237 (467)
T TIGR01318       217 DI--SLDDLL--EDYDAVFLGVGTY  237 (467)
T ss_pred             cc--CHHHHH--hcCCEEEEEeCCC
Confidence            11  111222  2799999999974

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06398 aldose dehydrogenase; Validated

Probab=96.86  E-value=0.0048  Score=49.12  Aligned_cols=76  Identities=13%  Similarity=0.164  Sum_probs=48.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhC-CCCccEEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH-GMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  146 (254)
                      ++.++||+|+ +++|...+..+...|+ +|+++++++++...+.    ....|..+  ..+..+.+.+... ..++|+++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~----~~~~D~~~--~~~i~~~~~~~~~~~~~id~li   77 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYNDVD----YFKVDVSN--KEQVIKGIDYVISKYGRIDILV   77 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccCceE----EEEccCCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 8999999999999999 8999888765432110    11224333  1333333333321 12799999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      ++.|.
T Consensus        78 ~~Ag~   82 (258)
T PRK06398         78 NNAGI   82 (258)
T ss_pred             ECCCC
Confidence            98874

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.85  E-value=0.0066  Score=48.97  Aligned_cols=94  Identities=18%  Similarity=0.154  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      ..+.+++|+|+|++|.+++..+...|+.+|+++.++.++.+.+. .++....+.. +   .+..    +  .-..+|+|+
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~---~~~~----~--~~~~~DivI  190 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D---LELQ----E--ELADFDLII  190 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c---ccch----h--ccccCCEEE
Confidence            35678999999999999999999999669999999988776553 3332110111 1   0010    1  112789999


Q ss_pred             EcCCChhH-----HHHHHHHcccCCcEEEEE
Q 025336          147 ECTGVPSL-----LSEALETTKVGKGKVIVI  172 (254)
Q Consensus       147 d~~g~~~~-----~~~~~~~l~~~~G~~v~~  172 (254)
                      +|+.....     .+.....+.+. ..++++
T Consensus       191 naTp~g~~~~~~~~~~~~~~l~~~-~~v~Di  220 (278)
T PRK00258        191 NATSAGMSGELPLPPLPLSLLRPG-TIVYDM  220 (278)
T ss_pred             ECCcCCCCCCCCCCCCCHHHcCCC-CEEEEe
Confidence            99864310     01223456665 565555

>PRK01581 speE spermidine synthase; Validated

Probab=96.85  E-value=0.014  Score=48.42  Aligned_cols=103  Identities=11%  Similarity=0.033  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC-----ceEeCCCCC--CCchHHHHHHHhhCCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM-----TDFINPDDE--PNKSISELVKGITHGM  140 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~-----~~v~~~~~~--~~~~~~~~i~~~~~~~  140 (254)
                      ....+|||+|+| .|.++..+++..+..+|++++.+++-.+.++.+..     ...++....  -..|..+.+.+.  ..
T Consensus       149 ~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--~~  225 (374)
T PRK01581        149 IDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--SS  225 (374)
T ss_pred             CCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--CC
Confidence            344689999976 46677788887665699999999999998886310     000000000  013444555442  23


Q ss_pred             CccEEE-EcCCC----------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          141 GVDYCF-ECTGV----------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       141 ~~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .||+|| |....          ...+..+.+.|+++ |.++.-..
T Consensus       226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~  269 (374)
T PRK01581        226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN  269 (374)
T ss_pred             CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            799998 43221          12467888899999 99877643

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.84  E-value=0.0049  Score=49.82  Aligned_cols=76  Identities=17%  Similarity=0.056  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce-EeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD-FINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      ++.+++|+|+|+.+++++..+...|+++++++.|+.+|.+.+. +++... +....      ..+.+....  ..+|+||
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~------~~~~~~~~~--~~~DiVI  195 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE------GDSGGLAIE--KAAEVLV  195 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc------chhhhhhcc--cCCCEEE
Confidence            5778999999999999999999999988999999988777653 333211 11110      001111111  2789999


Q ss_pred             EcCCCh
Q 025336          147 ECTGVP  152 (254)
Q Consensus       147 d~~g~~  152 (254)
                      +|+...
T Consensus       196 naTp~g  201 (282)
T TIGR01809       196 STVPAD  201 (282)
T ss_pred             ECCCCC
Confidence            998753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.84  E-value=0.0096  Score=43.35  Aligned_cols=96  Identities=27%  Similarity=0.245  Sum_probs=60.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHH-HHhcCCce-EeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK-GEAFGMTD-FINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~-~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      .++.+++|+|+|.+|...++.+...|..+|+++++++++.+. ++.++... ....     .+..+.      -.++|++
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------~~~~Dvv   85 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAY-----LDLEEL------LAEADLI   85 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceee-----cchhhc------cccCCEE
Confidence            456889999999999999998888864389999888777655 44455321 0111     111111      1389999


Q ss_pred             EEcCCChhH----HHHHHHHcccCCcEEEEEccC
Q 025336          146 FECTGVPSL----LSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       146 ~d~~g~~~~----~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +.|++....    .......++++ ..++.++..
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~~~~-~~v~D~~~~  118 (155)
T cd01065          86 INTTPVGMKPGDELPLPPSLLKPG-GVVYDVVYN  118 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHHHcCCC-CEEEEcCcC
Confidence            999876521    11122345665 666666544

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.84  E-value=0.01  Score=47.25  Aligned_cols=80  Identities=15%  Similarity=0.138  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCc-eE--eCCCCCCCchHHHHHHHhh-CCCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMT-DF--INPDDEPNKSISELVKGIT-HGMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~-~v--~~~~~~~~~~~~~~i~~~~-~~~~~  142 (254)
                      ++.++||+|+ +++|...++.+...|+ +|+.+++++++.+.+.+ ++.. ..  .|..+  ..+....+.+.. ...++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   81 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS--YADNQRAVDQTVDAFGKL   81 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHhcCCC
Confidence            4678999986 8999999999999999 89999998877766543 3321 12  23332  123333333321 12379


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        82 d~li~~ag~   90 (263)
T PRK06200         82 DCFVGNAGI   90 (263)
T ss_pred             CEEEECCCC
Confidence            999998873

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.83  E-value=0.012  Score=43.59  Aligned_cols=95  Identities=19%  Similarity=0.306  Sum_probs=61.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|.|+|+ |-+|...++=|+..|. .|+++.+++.|+...+..   .++...-   .+.......+   .++|+||++.+
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~---~i~q~Di---fd~~~~a~~l---~g~DaVIsA~~   71 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGV---TILQKDI---FDLTSLASDL---AGHDAVISAFG   71 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccc---eeecccc---cChhhhHhhh---cCCceEEEecc
Confidence            5788987 9999999999999999 999999999888653221   1111111   1111111112   39999999887


Q ss_pred             Ch--h-------HHHHHHHHcccC-CcEEEEEccCC
Q 025336          151 VP--S-------LLSEALETTKVG-KGKVIVIGVGV  176 (254)
Q Consensus       151 ~~--~-------~~~~~~~~l~~~-~G~~v~~g~~~  176 (254)
                      ..  .       ..+.++..++.. .-|+.++|..+
T Consensus        72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG  107 (211)
T COG2910          72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG  107 (211)
T ss_pred             CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence            53  1       233456666653 24888888654

>PRK06484 short chain dehydrogenase; Validated

Probab=96.83  E-value=0.02  Score=50.56  Aligned_cols=105  Identities=17%  Similarity=0.207  Sum_probs=68.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+.++||+|+ +++|...++.+...|+ +|+.+++++++.+.+.+ ++...   ..|..+  .++....+.+... ...+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD--EAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            5678999986 8999999999999999 99999998877766543 44322   234433  2333333333321 1279


Q ss_pred             cEEEEcCCChh--------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          143 DYCFECTGVPS--------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       143 d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      |++|++.|...                          ..+.++..+..+ |+++.+++..+
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~~~  404 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSIAS  404 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECchhh
Confidence            99999887420                          123344455566 89988876543

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.024  Score=44.52  Aligned_cols=75  Identities=12%  Similarity=0.069  Sum_probs=48.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-e--EeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-D--FINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .+++|+|+ |++|...+..+...|+ +|+++++++++.+.+...+.. .  ..|..+  .+++.+.+.+.. . ..|.++
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~-~-~~d~~i   76 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQSANIFTLAFDVTD--HPGTKAALSQLP-F-IPELWI   76 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCCCeEEEeeCCC--HHHHHHHHHhcc-c-CCCEEE
Confidence            46899986 9999998888888899 899999988877766543311 1  223333  233334444332 2 457776


Q ss_pred             EcCC
Q 025336          147 ECTG  150 (254)
Q Consensus       147 d~~g  150 (254)
                      .+.|
T Consensus        77 ~~ag   80 (240)
T PRK06101         77 FNAG   80 (240)
T ss_pred             EcCc
Confidence            6665

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.83  E-value=0.0075  Score=49.73  Aligned_cols=81  Identities=19%  Similarity=0.209  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-----cCC-c---eEeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-----FGM-T---DFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----~g~-~---~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .|.+++|+|+ +++|...++.+...|+ +|+.+++++++.+.+.+     .+. .   ...|..+ +..+..+.+.+..+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKETIE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHHhc
Confidence            5789999997 8999998888888899 89999999887765422     221 1   1223332 11334444544444


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      +..+|+++++.|.
T Consensus       130 ~~didilVnnAG~  142 (320)
T PLN02780        130 GLDVGVLINNVGV  142 (320)
T ss_pred             CCCccEEEEecCc
Confidence            4467799998863

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.82  E-value=0.024  Score=41.80  Aligned_cols=88  Identities=19%  Similarity=0.237  Sum_probs=55.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|-++|.|.+|...++-+...|+ +|++.++++++.+.+.+.|+.. .       .+..+.+.      ..|+||-|+.+
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~-~-------~s~~e~~~------~~dvvi~~v~~   67 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEV-A-------DSPAEAAE------QADVVILCVPD   67 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEE-E-------SSHHHHHH------HBSEEEE-SSS
T ss_pred             EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhh-h-------hhhhhHhh------cccceEeeccc
Confidence            68899999999999999899999 9999999999998888777432 2       11222221      44777777776


Q ss_pred             hhHHHHHHH------HcccCCcEEEEEccC
Q 025336          152 PSLLSEALE------TTKVGKGKVIVIGVG  175 (254)
Q Consensus       152 ~~~~~~~~~------~l~~~~G~~v~~g~~  175 (254)
                      ...++..+.      .+.++ ..++.++..
T Consensus        68 ~~~v~~v~~~~~i~~~l~~g-~iiid~sT~   96 (163)
T PF03446_consen   68 DDAVEAVLFGENILAGLRPG-KIIIDMSTI   96 (163)
T ss_dssp             HHHHHHHHHCTTHGGGS-TT-EEEEE-SS-
T ss_pred             chhhhhhhhhhHHhhccccc-eEEEecCCc
Confidence            444444333      34444 455555443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.011  Score=48.17  Aligned_cols=80  Identities=18%  Similarity=0.230  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.+++|+|+ |++|...++.+...|+ +|++++++.++.+.+.+    .+.. .+  .|..+  .++..+.+.++.. .
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  115 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD--LDAVDALVADVEKRI  115 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            3578999986 9999999998888899 99999998876654432    2322 12  23332  1333333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus       116 g~id~li~~AG~  127 (293)
T PRK05866        116 GGVDILINNAGR  127 (293)
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.009  Score=47.64  Aligned_cols=79  Identities=11%  Similarity=0.063  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eE--eCCCCCCCchH-HHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DF--INPDDEPNKSI-SELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~-~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.+    .+.. .+  .|..+   .+. .+.+.+... 
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH---PEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHHH
Confidence            4788999987 8999999999998999 99999998766554322    2322 12  34443   332 222332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|++|++.|.
T Consensus        85 ~~~id~vi~~Ag~   97 (263)
T PRK07814         85 FGRLDIVVNNVGG   97 (263)
T ss_pred             cCCCCEEEECCCC
Confidence            1379999998873

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.80  E-value=0.015  Score=46.89  Aligned_cols=43  Identities=23%  Similarity=0.206  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      ++.+++|+|+|+.+++++..+...|+++++++.++.++.+.+.
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            4678999999999999998888899988999999988776653

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.80  E-value=0.0038  Score=47.84  Aligned_cols=103  Identities=20%  Similarity=0.255  Sum_probs=66.6

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      .+.....+||-+|.+ +|..++.+|+.+.- .+|+.++.++++.+.+++    .|...-+....   .+..+.+.++...
T Consensus        41 ~~~~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~---gda~~~l~~l~~~  116 (205)
T PF01596_consen   41 VRLTRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE---GDALEVLPELAND  116 (205)
T ss_dssp             HHHHT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE---S-HHHHHHHHHHT
T ss_pred             HHhcCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE---eccHhhHHHHHhc
Confidence            334456789999964 37888888886642 399999999999888865    35322222222   4455555554322


Q ss_pred             ---CCccEEE-EcCCC--hhHHHHHHHHcccCCcEEEEE
Q 025336          140 ---MGVDYCF-ECTGV--PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       140 ---~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~  172 (254)
                         ..||+|| |+--.  ...++.++++++++ |.++.=
T Consensus       117 ~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~D  154 (205)
T PF01596_consen  117 GEEGQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIAD  154 (205)
T ss_dssp             TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             cCCCceeEEEEcccccchhhHHHHHhhhccCC-eEEEEc
Confidence               3799999 65433  23477888999998 876653

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.037  Score=44.37  Aligned_cols=77  Identities=18%  Similarity=0.233  Sum_probs=48.9

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce----EeCCCCCCCchHHHHHHHhh-CCCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD----FINPDDEPNKSISELVKGIT-HGMG  141 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~----v~~~~~~~~~~~~~~i~~~~-~~~~  141 (254)
                      +++|+|+ |++|..+++.+...|+ +|+.+++++++.+.+    +..+...    ..|..+  ..+....+.+.. ...+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD--YDAVAAFAADIHAAHGS   78 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC--HHHHHHHHHHHHHhcCC
Confidence            6899987 9999999998888999 888888877654433    2234321    234443  122222222221 1237


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        79 id~lv~~ag~   88 (272)
T PRK07832         79 MDVVMNIAGI   88 (272)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.79  E-value=0.016  Score=48.95  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      .+.+|+|+|+|++|..++..+...|.++++.++.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56789999999999999999999999899999887

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.79  E-value=0.01  Score=47.71  Aligned_cols=80  Identities=15%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCceEe--CCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-G--TVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTDFI--NPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g--~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~v~--~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ +  ++|.+.++.+...|+ +|+.++++++..+.+    ++.|....+  |..+  .++....+.+... 
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d--~~~v~~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED--IASVDAVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 4  899999999889999 888887765322222    234533222  3333  2333333333322 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ...+|+++++.|.
T Consensus        83 ~g~iD~lVnnAG~   95 (271)
T PRK06505         83 WGKLDFVVHAIGF   95 (271)
T ss_pred             hCCCCEEEECCcc
Confidence            1379999998873

>PRK06196 oxidoreductase; Provisional

Probab=96.78  E-value=0.011  Score=48.57  Aligned_cols=80  Identities=19%  Similarity=0.287  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcC-Cce-EeCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFG-MTD-FINPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g-~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|++++++.++.+.+. ++. ... ..|..+  .+++...+.++.. ..++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d--~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD--LESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC--HHHHHHHHHHHHhcCCCCC
Confidence            4678999987 8999999998888999 8999988877665432 222 211 124333  2333333333322 23799


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++++.|.
T Consensus       102 ~li~nAg~  109 (315)
T PRK06196        102 ILINNAGV  109 (315)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.77  E-value=0.014  Score=46.21  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ...+|+|.|+|++|..++..+...|.+++..+|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            457899999999999999999999998998887764

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.03  Score=45.07  Aligned_cols=78  Identities=21%  Similarity=0.222  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhCCCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      +++++|.|+|++|..+++.+. .|+ +|+.+++++++.+.+    +..+... .  .|..+  .++....+.+.....++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS--RESVKALAATAQTLGPV   77 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHhcCCC
Confidence            356888898899999888875 798 899998887655433    2223221 2  24433  23334444333222379


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        78 d~li~nAG~   86 (275)
T PRK06940         78 TGLVHTAGV   86 (275)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.01  Score=47.03  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+.    ..+...   ..|..+  .++..+.+.+... -
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ--HQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4788999987 8999999999999999 8999988877665442    223221   223333  2333333333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        85 g~id~lv~~ag~   96 (253)
T PRK05867         85 GGIDIAVCNAGI   96 (253)
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.76  E-value=0.012  Score=46.74  Aligned_cols=80  Identities=15%  Similarity=0.221  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCceEe--CCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGLG---TVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTDFI--NPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~g---~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~v~--~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|++   ++|.++++.+...|+ +|+.++++++..+.+    ++++...++  |-.+  .++....+.+... 
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE--PGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC--HHHHHHHHHHHHHH
Confidence            46789999863   899999998888999 888888875432222    233332222  3332  2333333333322 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        86 ~g~ld~lv~nAg~   98 (258)
T PRK07533         86 WGRLDFLLHSIAF   98 (258)
T ss_pred             cCCCCEEEEcCcc
Confidence            1279999998863

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.76  E-value=0.011  Score=48.90  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .+.+|+|+|+|++|..+++.+-..|.+++..+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            356899999999999999999999998899898874

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.76  E-value=0.02  Score=45.63  Aligned_cols=99  Identities=21%  Similarity=0.206  Sum_probs=66.4

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++.... .++.      .+..    .+.....
T Consensus        25 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~------~d~~----~~~~~~~   93 (258)
T PRK01683         25 ARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE------ADIA----SWQPPQA   93 (258)
T ss_pred             hhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE------Cchh----ccCCCCC
Confidence            455677889999998764 77778888876434999999999888887764322 1221      1111    1112238


Q ss_pred             ccEEEEcCC-----C-hhHHHHHHHHcccCCcEEEEEc
Q 025336          142 VDYCFECTG-----V-PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       142 ~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ||+|+-...     . ...+..+.+.|+++ |.++...
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~~  130 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQM  130 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEEC
Confidence            999985432     1 23678888999999 9987753

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.76  E-value=0.025  Score=45.50  Aligned_cols=95  Identities=19%  Similarity=0.277  Sum_probs=65.2

Q ss_pred             cccchhhhhhHHHHHhcC-CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC
Q 025336           49 FLSCGFTTGFGAAWKEAE-VEKGSSVAVLGLG-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~-~~~~~~vlI~G~g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                      .+||+....+..+. ..+ --.|.+++|+|.| .+|.-++.++...|+ +|++..+.                   .   
T Consensus       137 ~~PcTp~ai~~ll~-~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~-------------------t---  192 (286)
T PRK14175        137 FVPCTPLGIMEILK-HADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSR-------------------S---  192 (286)
T ss_pred             CCCCcHHHHHHHHH-HcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------c---
Confidence            45665555555553 333 3378999999985 599999999999999 77776322                   1   


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .++.+.+      +..|++|.++|.+..+..  ..++++ ..++.+|...
T Consensus       193 ~~l~~~~------~~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~~  233 (286)
T PRK14175        193 KDMASYL------KDADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNTP  233 (286)
T ss_pred             hhHHHHH------hhCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCCc
Confidence            2222222      278999999998755544  457887 8888888753

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.015  Score=46.82  Aligned_cols=79  Identities=15%  Similarity=0.182  Sum_probs=52.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC-Cce---EeCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG-MTD---FINPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g-~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      +.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+.. ...   ..|..+  .+.+...+.+... -.++|
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~~~d   80 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD--FDAIDAVVADAEATFGPID   80 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC--HHHHHHHHHHHHHHhCCCC
Confidence            567999987 9999999999888999 8999999887766554432 111   224433  1223333332211 12699


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++++.|.
T Consensus        81 ~vv~~ag~   88 (277)
T PRK06180         81 VLVNNAGY   88 (277)
T ss_pred             EEEECCCc
Confidence            99999875

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.75  E-value=0.021  Score=44.65  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ..+|+|.|+|++|..++..+...|.++++.+|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            57899999999999999999999998998886654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.75  E-value=0.012  Score=45.04  Aligned_cols=92  Identities=16%  Similarity=0.142  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc-cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW-KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .|.+|||+|+|.+|..-++.+...|+ +|++++.... ....+.+.|.-..+. ++   -. ...   +   .++++||-
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~-~~---~~-~~d---l---~~~~lVi~   75 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLA-RC---FD-ADI---L---EGAFLVIA   75 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEe-CC---CC-HHH---h---CCcEEEEE
Confidence            46799999999999999999999999 8888866543 223333334222221 21   11 111   1   27999999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEc
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      +++.+..-..+....+.. |..|...
T Consensus        76 at~d~~ln~~i~~~a~~~-~ilvn~~  100 (205)
T TIGR01470        76 ATDDEELNRRVAHAARAR-GVPVNVV  100 (205)
T ss_pred             CCCCHHHHHHHHHHHHHc-CCEEEEC
Confidence            999874444555556666 7666443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.73  E-value=0.011  Score=53.40  Aligned_cols=77  Identities=26%  Similarity=0.360  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc---------------------cHHHHHhcCCceEeCCCCCCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW---------------------KKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~---------------------~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      .+++|+|+|+|+.|+.++..++..|. +|++.++.+.                     +.++++++|.+..++..-....
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            48999999999999999999999999 8988877653                     4556677887765554320001


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCCh
Q 025336          128 SISELVKGITHGMGVDYCFECTGVP  152 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~  152 (254)
                      .+    .++.  .++|.+|.++|..
T Consensus       388 ~~----~~l~--~~~DaV~latGa~  406 (639)
T PRK12809        388 TF----SDLT--SEYDAVFIGVGTY  406 (639)
T ss_pred             CH----HHHH--hcCCEEEEeCCCC
Confidence            12    1222  2799999999863

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.011  Score=46.83  Aligned_cols=73  Identities=14%  Similarity=0.078  Sum_probs=48.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce-E--eCCCCCCCchHHHHHHHhhCCCC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD-F--INPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      +.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.++.    .+... +  .|..+   .+   .+.+...+ +
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~---~~~~~~~~-~   73 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD---AI---DRAQAAEW-D   73 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC---HH---HHHHHhcC-C
Confidence            357999987 9999999999999999 89998887765544432    23221 1  23333   22   22222233 8


Q ss_pred             ccEEEEcCC
Q 025336          142 VDYCFECTG  150 (254)
Q Consensus       142 ~d~v~d~~g  150 (254)
                      +|++|++.|
T Consensus        74 id~vi~~ag   82 (257)
T PRK09291         74 VDVLLNNAG   82 (257)
T ss_pred             CCEEEECCC
Confidence            999999887

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.72  E-value=0.019  Score=41.32  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=29.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +|+|.|+|++|...++.+...|.+++..+|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            489999999999999999999998899987663

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.72  E-value=0.014  Score=46.02  Aligned_cols=80  Identities=24%  Similarity=0.303  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHHHHhcCCc-eE--eCCCCCCCchHHHHHHHhhC-CCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW--KKEKGEAFGMT-DF--INPDDEPNKSISELVKGITH-GMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~  141 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+.+++++.  ..+.+++.+.. ..  .|..+  .+++...+.+... ..+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   80 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSD--IEAIKALVDSAVEEFGH   80 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence            4788999987 8999999998888999 8999887642  12223344432 12  23333  2334434433321 237


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        81 ~d~li~~ag~   90 (248)
T TIGR01832        81 IDILVNNAGI   90 (248)
T ss_pred             CCEEEECCCC
Confidence            9999998874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.72  E-value=0.013  Score=48.20  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=60.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|||+|+ |-+|..+++.+...|. +|.+++++.++...+...+...+. |..+  +.++...+    .  ++|.||+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d--~~~l~~al----~--g~d~Vi~~~   72 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL--PETLPPSF----K--GVTAIIDAS   72 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC--HHHHHHHH----C--CCCEEEECC
Confidence            6999987 9999999999999999 899998887665555555654332 3333  12222222    2  789999987


Q ss_pred             CChh------------HHHHHHHHcccCCc--EEEEEccC
Q 025336          150 GVPS------------LLSEALETTKVGKG--KVIVIGVG  175 (254)
Q Consensus       150 g~~~------------~~~~~~~~l~~~~G--~~v~~g~~  175 (254)
                      +...            ....+++.++.. |  +++.++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~-gvkr~I~~Ss~  111 (317)
T CHL00194         73 TSRPSDLYNAKQIDWDGKLALIEAAKAA-KIKRFIFFSIL  111 (317)
T ss_pred             CCCCCCccchhhhhHHHHHHHHHHHHHc-CCCEEEEeccc
Confidence            5311            113344555444 4  78877763

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.012  Score=46.67  Aligned_cols=80  Identities=18%  Similarity=0.182  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce--E--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD--F--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~--v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++++..+...+.....  .  .|..+  ..++...+.+... ..++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~~   90 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD--SQSVEAAVAAVISAFGRI   90 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999987 9999999998888999 8999988876554444432111  2  23332  2233333333211 1379


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |.++.+.|.
T Consensus        91 d~vi~~ag~   99 (255)
T PRK06841         91 DILVNSAGV   99 (255)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.70  E-value=0.048  Score=43.39  Aligned_cols=79  Identities=14%  Similarity=0.194  Sum_probs=48.1

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCc---ccHHHH-Hhc-CCc-e--EeCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKNP---WKKEKG-EAF-GMT-D--FINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~~---~~~~~~-~~~-g~~-~--v~~~~~~~~~~~~~~i~~~~  137 (254)
                      .+.+++|+|+   +++|.++++.+...|+ +|+.+.++.   ++.+.+ +++ +.. .  ..|..+  .++....+.++.
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   82 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS--DEEITACFETIK   82 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC--HHHHHHHHHHHH
Confidence            4678999986   5999999988888999 888886643   233333 223 211 1  123333  233333444332


Q ss_pred             C-CCCccEEEEcCC
Q 025336          138 H-GMGVDYCFECTG  150 (254)
Q Consensus       138 ~-~~~~d~v~d~~g  150 (254)
                      . -.++|+++++.|
T Consensus        83 ~~~g~ld~lv~nag   96 (257)
T PRK08594         83 EEVGVIHGVAHCIA   96 (257)
T ss_pred             HhCCCccEEEECcc
Confidence            2 137999999876

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.69  E-value=0.022  Score=44.97  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=67.3

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ..+..+..+||-+|.+ +|..++.+++.++. .+++.++.+++..+.+++    .|...-+....   .+..+.+.++..
T Consensus        74 l~~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~---G~a~e~L~~l~~  149 (247)
T PLN02589         74 LLKLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE---GPALPVLDQMIE  149 (247)
T ss_pred             HHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---ccHHHHHHHHHh
Confidence            3444556789988863 47777788876632 289999999988888765    45322233333   455566655532


Q ss_pred             ----CCCccEEE-EcCCC--hhHHHHHHHHcccCCcEEEE
Q 025336          139 ----GMGVDYCF-ECTGV--PSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       139 ----~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~  171 (254)
                          ...||+|| |+--.  ...++.+++.++++ |.++.
T Consensus       150 ~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~  188 (247)
T PLN02589        150 DGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGY  188 (247)
T ss_pred             ccccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEE
Confidence                13899999 44422  23577888999998 87654

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.68  E-value=0.033  Score=36.91  Aligned_cols=76  Identities=18%  Similarity=0.317  Sum_probs=51.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CCeEEEE-cCCcccHHHH-HhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           72 SVAVLGLGTVGLGAVDGARMQG---AAKIIGI-DKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g---~~~v~~v-~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +|.|+|+|.+|.+.++-....|   . +|+.+ ++++++.+.+ ++++.. +..      .+..+.++      ..|++|
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~-~~~------~~~~~~~~------~advvi   66 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQ-ATA------DDNEEAAQ------EADVVI   66 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTE-EES------EEHHHHHH------HTSEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhccc-ccc------CChHHhhc------cCCEEE
Confidence            4778899999999999999888   6 78845 8999888876 456643 222      12333332      679999


Q ss_pred             EcCCChhHHHHHHHHc
Q 025336          147 ECTGVPSLLSEALETT  162 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l  162 (254)
                      -|+-.. .+...++.+
T Consensus        67 lav~p~-~~~~v~~~i   81 (96)
T PF03807_consen   67 LAVKPQ-QLPEVLSEI   81 (96)
T ss_dssp             E-S-GG-GHHHHHHHH
T ss_pred             EEECHH-HHHHHHHHH
Confidence            999876 445454443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=96.67  E-value=0.049  Score=38.26  Aligned_cols=88  Identities=22%  Similarity=0.281  Sum_probs=52.2

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcC--CCeEEEEcCCcc--cH-HHHHhcCCceEeCCCCCCCchHHHHHH------------
Q 025336           73 VAVLGL-GTVGLGAVDGARMQG--AAKIIGIDKNPW--KK-EKGEAFGMTDFINPDDEPNKSISELVK------------  134 (254)
Q Consensus        73 vlI~G~-g~~G~~~~~~a~~~g--~~~v~~v~~~~~--~~-~~~~~~g~~~v~~~~~~~~~~~~~~i~------------  134 (254)
                      |.|+|+ |++|..++++.+...  + +|++......  ++ +.++++.+..+.-.+    +...+.++            
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~----~~~~~~l~~~~~~~~~~~~v   75 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIAD----EEAYEELKKALPSKGPGIEV   75 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESS----HHHHHHHHHHHHHTTSSSEE
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcC----HHHHHHHHHHhhhcCCCCEE
Confidence            578898 999999999999887  6 7777655432  22 234567777665444    22222222            


Q ss_pred             --------HhhCCCCccEEEEcCCChhHHHHHHHHcccC
Q 025336          135 --------GITHGMGVDYCFECTGVPSLLSEALETTKVG  165 (254)
Q Consensus       135 --------~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~  165 (254)
                              ++.....+|+++.++.+...+.-.+..+..+
T Consensus        76 ~~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g  114 (129)
T PF02670_consen   76 LSGPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAG  114 (129)
T ss_dssp             EESHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTT
T ss_pred             EeChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCC
Confidence                    2223236777777666655666666666654

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.65  E-value=0.018  Score=43.90  Aligned_cols=36  Identities=14%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ...+|+|.|+|++|.-.+..+-..|.+++..+|.+.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            357899999999999999999999998888887653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.018  Score=45.00  Aligned_cols=79  Identities=16%  Similarity=0.074  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC--
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH--  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~--  138 (254)
                      ++.+++|.|+ +++|...+.-+...|+ +|+.+.+++++.+.+.    +.+... .  .|..+  .++....+.+...  
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS--QESIRHLFDAIEQQF   80 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 8999999988888999 8999988887765432    334322 2  23332  2333333333322  


Q ss_pred             CCCccEEEEcCC
Q 025336          139 GMGVDYCFECTG  150 (254)
Q Consensus       139 ~~~~d~v~d~~g  150 (254)
                      +..+|+++++.|
T Consensus        81 g~~iD~li~nag   92 (227)
T PRK08862         81 NRAPDVLVNNWT   92 (227)
T ss_pred             CCCCCEEEECCc
Confidence            227999999986

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.65  E-value=0.017  Score=47.99  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ...+|+|+|+|++|..+++.+...|.+++..+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            356899999999999999999999999999998864

>PRK07574 formate dehydrogenase; Provisional

Probab=96.63  E-value=0.04  Score=46.44  Aligned_cols=45  Identities=22%  Similarity=0.432  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG  114 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g  114 (254)
                      .|.+|.|+|.|.+|+.+++.++..|+ +|++.+++....+..+.+|
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g  235 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELG  235 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcC
Confidence            56789999999999999999999999 9999988764433333444

>PRK06128 oxidoreductase; Provisional

Probab=96.63  E-value=0.031  Score=45.55  Aligned_cols=80  Identities=18%  Similarity=0.094  Sum_probs=48.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc--HH----HHHhcCCce-E--eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK--KE----KGEAFGMTD-F--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~--~~----~~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|+.+.++.+.  .+    .++..|... +  .|..+  .....+.+.+...
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  130 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD--EAFCRQLVERAVK  130 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHHHHH
Confidence            4678999986 9999999998888999 88877554321  11    223344322 1  23333  1223333333221


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       -.++|++|++.|.
T Consensus       131 ~~g~iD~lV~nAg~  144 (300)
T PRK06128        131 ELGGLDILVNIAGK  144 (300)
T ss_pred             HhCCCCEEEECCcc
Confidence             1279999998873

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.015  Score=46.16  Aligned_cols=78  Identities=17%  Similarity=0.164  Sum_probs=51.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cC-Cc-e--EeCCCCCCCchHHHHHHHhhC--CCCc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FG-MT-D--FINPDDEPNKSISELVKGITH--GMGV  142 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g-~~-~--v~~~~~~~~~~~~~~i~~~~~--~~~~  142 (254)
                      .++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.. .+ .. .  ..|..+  ..++.+.+.+...  ..++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD--RAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            46899987 9999999998888999 89999888877665533 22 11 1  234443  1333333333221  2379


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++.+.|.
T Consensus        79 d~vi~~ag~   87 (260)
T PRK08267         79 DVLFNNAGI   87 (260)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.013  Score=46.35  Aligned_cols=79  Identities=14%  Similarity=0.136  Sum_probs=50.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eEe--CCCCCCCchHHHHHHHhhC-CC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DFI--NPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      +.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.+    .+.. ..+  |..+  .+++...+.+... ..
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN--PEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence            467999986 8999999999999999 89999888766554422    2322 222  3332  2333333333221 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|.++++.|.
T Consensus        78 ~id~lI~~ag~   88 (252)
T PRK07677         78 RIDALINNAAG   88 (252)
T ss_pred             CccEEEECCCC
Confidence            78999998873

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.014  Score=46.46  Aligned_cols=80  Identities=20%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-----cCCce----EeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-----FGMTD----FINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----~g~~~----v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.+++|+|+ +++|...++.+...|+ +|+.+++++++.+.+.+     .+...    ..|..+  .++..+.+.+...
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   83 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD--EADVAAFAAAVEA   83 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4678999987 8999999999999999 89999998876654321     11111    124443  1233333333321


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       -.++|+++++.|.
T Consensus        84 ~~g~id~li~~Ag~   97 (265)
T PRK07062         84 RFGGVDMLVNNAGQ   97 (265)
T ss_pred             hcCCCCEEEECCCC
Confidence             1379999999874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.60  E-value=0.018  Score=45.11  Aligned_cols=79  Identities=20%  Similarity=0.241  Sum_probs=51.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      +.++||+|+ |.+|...++.+...|. +|+++.+++++.+..    +..+... .  .|..+  +..+.+.+.++.. -.
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD--EAAVRALIEAAVEAFG   81 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence            468999987 9999999999888899 799998887765443    2334322 1  24333  2333343433321 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      .+|.++.+.|.
T Consensus        82 ~id~vi~~ag~   92 (246)
T PRK05653         82 ALDILVNNAGI   92 (246)
T ss_pred             CCCEEEECCCc
Confidence            68999998864

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.60  E-value=0.027  Score=45.72  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ++.+++|+|+|++|++++..+...|+++|+++.++.
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            467899999999999999888899996699998886

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.017  Score=45.03  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHH----HHhcCCceE-eCCCCCCCchHHHHHHHhhC-CCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEK----GEAFGMTDF-INPDDEPNKSISELVKGITH-GMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~----~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~-~~~  141 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++...    ++..+...+ .|..+  ..++...+.+... ..+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD--PQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC--HHHHHHHHHHHHHHhCC
Confidence            3678999987 9999999998888899 89999887765432    222232221 23332  1333333332221 127


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        83 ~d~vi~~ag~   92 (239)
T PRK12828         83 LDALVNIAGA   92 (239)
T ss_pred             cCEEEECCcc
Confidence            9999998773

>PLN02823 spermine synthase

Probab=96.59  E-value=0.021  Score=47.23  Aligned_cols=100  Identities=13%  Similarity=0.078  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--eEeCCCCC--CCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--DFINPDDE--PNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~v~~~~~~--~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ..++|||+|+|. |..+..++++.+..+|++++.+++-.+.++++-..  ..++....  -..|....+++ . ...||+
T Consensus       103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~-~~~yDv  179 (336)
T PLN02823        103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-R-DEKFDV  179 (336)
T ss_pred             CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-C-CCCccE
Confidence            346899998764 66667788877766899999999999998874311  01110000  01344455543 2 348999


Q ss_pred             EE-EcCC----Ch-------hHHH-HHHHHcccCCcEEEEE
Q 025336          145 CF-ECTG----VP-------SLLS-EALETTKVGKGKVIVI  172 (254)
Q Consensus       145 v~-d~~g----~~-------~~~~-~~~~~l~~~~G~~v~~  172 (254)
                      || |...    ++       ..++ .+.+.|+++ |.++.-
T Consensus       180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q  219 (336)
T PLN02823        180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQ  219 (336)
T ss_pred             EEecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEe
Confidence            98 5432    11       1344 677889999 988754

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.019  Score=45.38  Aligned_cols=73  Identities=18%  Similarity=0.312  Sum_probs=46.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-ccHHHHHhcCCce--EeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-WKKEKGEAFGMTD--FINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+.+++|+|+ |++|..+++.+...|+ +|+++++++ ++.+... .+...  ..|..+   .+   .+.+.. + ++|+
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~---~~---~~~~~~-~-~iDi   82 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESND-ESPNEWIKWECGK---EE---SLDKQL-A-SLDV   82 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhc-cCCCeEEEeeCCC---HH---HHHHhc-C-CCCE
Confidence            3678999987 8999999999999999 899888775 2222111 11112  223332   22   222222 2 6999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        83 lVnnAG~   89 (245)
T PRK12367         83 LILNHGI   89 (245)
T ss_pred             EEECCcc
Confidence            9999874

>PRK06194 hypothetical protein; Provisional

Probab=96.58  E-value=0.013  Score=47.26  Aligned_cols=79  Identities=18%  Similarity=0.191  Sum_probs=50.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-h---cCCce-Ee--CCCCCCCchHHHHHHHhh-CCC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-A---FGMTD-FI--NPDDEPNKSISELVKGIT-HGM  140 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~---~g~~~-v~--~~~~~~~~~~~~~i~~~~-~~~  140 (254)
                      +.++||+|+ |.+|..+++.+...|+ +|++++++.++.+... +   .+... ++  |..+  .+++.+.+.+.. ...
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD--AAQVEALADAALERFG   82 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            578999986 9999999998888999 8999988766554432 2   23321 12  3332  123333332221 123


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|++|++.|.
T Consensus        83 ~id~vi~~Ag~   93 (287)
T PRK06194         83 AVHLLFNNAGV   93 (287)
T ss_pred             CCCEEEECCCC
Confidence            78999999875

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.58  E-value=0.048  Score=42.21  Aligned_cols=36  Identities=33%  Similarity=0.475  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ++.+|+|.|.|.+|+.+++++...|.+.|.+.+.+.
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            688999999999999999999999994444455554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.57  E-value=0.012  Score=45.12  Aligned_cols=91  Identities=14%  Similarity=0.060  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc-cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW-KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .+.+|||+|+|.+|...++.+...|+ +|+++.+... ....+...+.- .+..+.     +..     ..-.++|+||-
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~~~i-~~~~~~-----~~~-----~~l~~adlVia   76 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEEGKI-RWKQKE-----FEP-----SDIVDAFLVIA   76 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhCCCE-EEEecC-----CCh-----hhcCCceEEEE
Confidence            57899999999999999988888998 8888865421 11111112211 121111     110     01137899999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEc
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      +++.+ .++..+...+.. +.++...
T Consensus        77 aT~d~-elN~~i~~~a~~-~~lvn~~  100 (202)
T PRK06718         77 ATNDP-RVNEQVKEDLPE-NALFNVI  100 (202)
T ss_pred             cCCCH-HHHHHHHHHHHh-CCcEEEC
Confidence            99987 455555544444 5555443

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.57  E-value=0.078  Score=42.44  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=63.5

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ...+++|++||=.|+|+ |..++.++..++ ...|++++.++++.+.+++    .|...+....    .+... +.. ..
T Consensus        66 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~----~D~~~-~~~-~~  138 (264)
T TIGR00446        66 ALEPDPPERVLDMAAAP-GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTN----FDGRV-FGA-AV  138 (264)
T ss_pred             HhCCCCcCEEEEECCCc-hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEec----CCHHH-hhh-hc
Confidence            44678899998888765 555666666553 2379999999999887754    5654322111    12111 111 12


Q ss_pred             CCCccEEE-E--cCCC-------------------------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      + .||.|+ |  |.|.                         ...+..+++.++++ |+++....
T Consensus       139 ~-~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvYstc  200 (264)
T TIGR00446       139 P-KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG-GVLVYSTC  200 (264)
T ss_pred             c-CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeC
Confidence            2 599998 4  4543                         12567788899999 99875543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.56  E-value=0.0073  Score=43.81  Aligned_cols=99  Identities=15%  Similarity=0.156  Sum_probs=59.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCC--C-CchHHHHHHHhhCCCCccEEEEcC
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDE--P-NKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~--~-~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      |+|+|+|++|.+....++..|. +|..+.+++ +.+..++.|........+.  . .......  . .....+|++|-|+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~D~viv~v   75 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--S-ADAGPYDLVIVAV   75 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--G-HHHSTESEEEE-S
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--h-hccCCCcEEEEEe
Confidence            6899999999998888877999 899998887 7777776553211111000  0 0000000  0 1123899999999


Q ss_pred             CChh---HHHHHHHHcccCCcEEEEEccCCC
Q 025336          150 GVPS---LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       150 g~~~---~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      -...   .++.+...+.++ ..++.+.+.-+
T Consensus        76 Ka~~~~~~l~~l~~~~~~~-t~iv~~qNG~g  105 (151)
T PF02558_consen   76 KAYQLEQALQSLKPYLDPN-TTIVSLQNGMG  105 (151)
T ss_dssp             SGGGHHHHHHHHCTGEETT-EEEEEESSSSS
T ss_pred             cccchHHHHHHHhhccCCC-cEEEEEeCCCC
Confidence            7642   333444455555 67777765443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.56  E-value=0.07  Score=40.51  Aligned_cols=75  Identities=23%  Similarity=0.350  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c----CCce-EeCCCCCCCchHHHHHHHhhCCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F----GMTD-FINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~----g~~~-v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++.+++|+|+ |.+|..++..+...|+ +|+.+.++.++.+.+.+ +    +... ..+..+  .++..+.+      .+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~------~~   97 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD--DAARAAAI------KG   97 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC--HHHHHHHH------hc
Confidence            5789999986 9999998888888898 89999888776655432 2    2221 122221  02222222      27


Q ss_pred             ccEEEEcCCCh
Q 025336          142 VDYCFECTGVP  152 (254)
Q Consensus       142 ~d~v~d~~g~~  152 (254)
                      .|++|.++...
T Consensus        98 ~diVi~at~~g  108 (194)
T cd01078          98 ADVVFAAGAAG  108 (194)
T ss_pred             CCEEEECCCCC
Confidence            89999988765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08223 hypothetical protein; Validated

Probab=96.55  E-value=0.019  Score=46.18  Aligned_cols=36  Identities=31%  Similarity=0.254  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +..+|+|.|+|++|..+++.+...|.+++..+|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            457899999999999999999999999998887764

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.55  E-value=0.023  Score=45.60  Aligned_cols=92  Identities=18%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-Hhc---CCceEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAF---GMTDFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~---g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      .++.+++|+|+|++|.+++..+...|+ +|+++.+++++.+.+ +.+   +....+...            +... ..+|
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~------------~~~~-~~~D  180 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSMD------------ELPL-HRVD  180 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEechh------------hhcc-cCcc
Confidence            457889999999999999988888898 899998887766544 333   221222111            1111 2689


Q ss_pred             EEEEcCCChh--HH---HHHHHHcccCCcEEEEEcc
Q 025336          144 YCFECTGVPS--LL---SEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       144 ~v~d~~g~~~--~~---~~~~~~l~~~~G~~v~~g~  174 (254)
                      ++++|++...  ..   ......++++ ..++++.-
T Consensus       181 ivInatp~gm~~~~~~~~~~~~~l~~~-~~v~D~~y  215 (270)
T TIGR00507       181 LIINATSAGMSGNIDEPPVPAEKLKEG-MVVYDMVY  215 (270)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHcCCC-CEEEEecc
Confidence            9999997531  11   1123456666 66666643

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=96.54  E-value=0.021  Score=41.43  Aligned_cols=75  Identities=21%  Similarity=0.276  Sum_probs=50.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCC---CCchHHHHHHHhhCCCCccEEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDE---PNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .+|+|+|+ |.+|.++++..|..++ -|..++-++....     ....+++.++.   -.+...+++.+.-.+.++|.||
T Consensus         4 grVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe~A-----d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~   77 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENEQA-----DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVF   77 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeecccccc-----cceEEecCCcchhHHHHHHHHHHHHhhcccccceEE
Confidence            57999987 9999999999999999 8888877765432     12334443320   0122333444444667999999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      ...|+
T Consensus        78 CVAGG   82 (236)
T KOG4022|consen   78 CVAGG   82 (236)
T ss_pred             Eeecc
Confidence            87765

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.54  E-value=0.048  Score=43.76  Aligned_cols=79  Identities=11%  Similarity=0.113  Sum_probs=50.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCc-eE--eCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMT-DF--INPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      +.++||+|+ |.+|..+++.+...|. +|+.+++++++.+.+.+ ++.. .+  .|..+  ..++...+.+... -.++|
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~d   79 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD--RAAVFAAVETAVEHFGRLD   79 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence            457999986 9999999988888898 89999888777665443 2221 12  23332  1233333332211 12789


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      .++.+.|.
T Consensus        80 ~vi~~ag~   87 (275)
T PRK08263         80 IVVNNAGY   87 (275)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.53  E-value=0.017  Score=52.54  Aligned_cols=76  Identities=25%  Similarity=0.333  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc---------------------cHHHHHhcCCceEeCCCCCCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW---------------------KKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~---------------------~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      .+.+|+|+|+|+.|+.++..++..|. +|+++++.+.                     +.+.++++|.+...+..-...-
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            57899999999999999999999999 8999877543                     3445566776543332210001


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCC
Q 025336          128 SISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      .. +.+   .  ..||.+|.++|.
T Consensus       405 ~~-~~~---~--~~~DavilAtGa  422 (654)
T PRK12769        405 SL-ESL---L--EDYDAVFVGVGT  422 (654)
T ss_pred             CH-HHH---H--hcCCEEEEeCCC
Confidence            11 111   1  279999998885

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.53  E-value=0.031  Score=43.32  Aligned_cols=96  Identities=22%  Similarity=0.231  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce--EeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD--FINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +|.+||=.|+|+ |++...+| +.|+ +|+++|.+++-.+.++......  -++|+.    ...+.+.+  .+..||+|+
T Consensus        59 ~g~~vLDvGCGg-G~Lse~mA-r~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~----~~~edl~~--~~~~FDvV~  129 (243)
T COG2227          59 PGLRVLDVGCGG-GILSEPLA-RLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ----ATVEDLAS--AGGQFDVVT  129 (243)
T ss_pred             CCCeEEEecCCc-cHhhHHHH-HCCC-eeEEecCChHHHHHHHHhhhhccccccchh----hhHHHHHh--cCCCccEEE
Confidence            788899999754 55444444 5678 9999999999999887543221  256664    33333332  224899997


Q ss_pred             E-----cCCChh-HHHHHHHHcccCCcEEEEEcc
Q 025336          147 E-----CTGVPS-LLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       147 d-----~~g~~~-~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .     -+..+. .+..+.+.++|+ |.++....
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lvkP~-G~lf~STi  162 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLVKPG-GILFLSTI  162 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHcCCC-cEEEEecc
Confidence            4     334433 567889999999 98776543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.53  E-value=0.056  Score=42.71  Aligned_cols=80  Identities=23%  Similarity=0.226  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCc-e--EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMT-D--FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |.+|..+++.+...|. +|+++++++++.+.+.    ..+.. .  ..|..+  ..++.+.+.++.. .
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   79 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD--EEAINAGIDYAVETF   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            3578999986 9999999998888899 8999988877655432    22322 1  223333  2333333332221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|.+.+.
T Consensus        80 ~~~d~vi~~a~~   91 (258)
T PRK12429         80 GGVDILVNNAGI   91 (258)
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>PRK08264 short chain dehydrogenase; Validated

Probab=96.53  E-value=0.023  Score=44.48  Aligned_cols=75  Identities=21%  Similarity=0.267  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eE--eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DF--INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+.+++|+|+ |.+|..+++.+...|+.+|++++++.++.+.   .+.. .+  .|..+   .+-...+.+.  -..+|+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~---~~~~~~~~~~--~~~id~   76 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD---PASVAAAAEA--ASDVTI   76 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC---HHHHHHHHHh--cCCCCE
Confidence            4578999986 9999999999998998678888888765543   3222 12  23333   2222222222  126899


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      +|.+.|.
T Consensus        77 vi~~ag~   83 (238)
T PRK08264         77 LVNNAGI   83 (238)
T ss_pred             EEECCCc
Confidence            9998876

>PRK08328 hypothetical protein; Provisional

Probab=96.52  E-value=0.044  Score=42.93  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .+.+|+|.|+|++|..+++.+...|.++++.+|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            357899999999999999999999998999987654

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.52  E-value=0.017  Score=45.90  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCceE---eCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTDF---INPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~v---~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    ++.+....   .|..+  ...+.+.+.+.. ..
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   82 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN--EDAVNAGIDKVAERF   82 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999999999 899998887655433    23343321   23333  122222222221 11


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++.+.|.
T Consensus        83 ~~~d~vi~~ag~   94 (262)
T PRK13394         83 GSVDILVSNAGI   94 (262)
T ss_pred             CCCCEEEECCcc
Confidence            268999998874

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.52  E-value=0.023  Score=45.18  Aligned_cols=77  Identities=21%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCceE--eCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTDF--INPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~v--~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      ++||+|+ +++|...++.+...|+ +|+.+++++++.+.+.    +.+....  .|..+  .++..+.+.+... ..++|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSD--KDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC--HHHHHHHHHHHHHhcCCCC
Confidence            5899986 8999999998888999 8999988876654432    2232222  23332  2333333333221 13799


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++++.|.
T Consensus        79 ~li~naG~   86 (259)
T PRK08340         79 ALVWNAGN   86 (259)
T ss_pred             EEEECCCC
Confidence            99998874

>PLN03139 formate dehydrogenase; Provisional

Probab=96.52  E-value=0.049  Score=45.92  Aligned_cols=45  Identities=18%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG  114 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g  114 (254)
                      .|.+|.|+|.|.+|+..++.++..|+ +|++.+++....+..++.|
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g  242 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETG  242 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcC
Confidence            57799999999999999999999999 8999987754444444444

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.022  Score=44.61  Aligned_cols=81  Identities=20%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC-c---eEeCCCCCCCchHH---HHHHHh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM-T---DFINPDDEPNKSIS---ELVKGI  136 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~-~---~v~~~~~~~~~~~~---~~i~~~  136 (254)
                      ++.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+. .   .-.|..+....++.   +.+.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            4578999986 9999999999888999 8999999887665432    2221 1   11222210012222   233332


Q ss_pred             hCCCCccEEEEcCCC
Q 025336          137 THGMGVDYCFECTGV  151 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~  151 (254)
                      ..+ .+|.++.+.|.
T Consensus        84 ~~~-~id~vi~~ag~   97 (239)
T PRK08703         84 TQG-KLDGIVHCAGY   97 (239)
T ss_pred             hCC-CCCEEEEeccc
Confidence            223 78999998884

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=96.48  E-value=0.043  Score=43.64  Aligned_cols=96  Identities=20%  Similarity=0.158  Sum_probs=66.7

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ......++++||-+|+|. |..+..+++.. +. +|++++.+++..+.+++.+.+.+.       .+..    ++.....
T Consensus        23 ~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~-------~d~~----~~~~~~~   89 (255)
T PRK14103         23 ARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART-------GDVR----DWKPKPD   89 (255)
T ss_pred             HhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE-------cChh----hCCCCCC
Confidence            556667889999998765 77777787765 55 899999999888888776543222       2221    1222237


Q ss_pred             ccEEEEcCC-----C-hhHHHHHHHHcccCCcEEEEE
Q 025336          142 VDYCFECTG-----V-PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       142 ~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ||+|+-...     . ...+..+.+.|+|+ |+++..
T Consensus        90 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~  125 (255)
T PRK14103         90 TDVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ  125 (255)
T ss_pred             ceEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence            999986432     2 33577888899999 998765

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.026  Score=44.76  Aligned_cols=81  Identities=21%  Similarity=0.200  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHH----HHHhcCCce---EeCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKE----KGEAFGMTD---FINPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~----~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      ++.+++|.|+ |++|..+++.+...|+.+|+++++++++..    .++..+...   ..|..+  .+.+.+.+.+.. .-
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD--VEDCRRVVAAADEAF   82 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 899999999999999933999888765544    223344322   224443  122333332221 11


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|.++++.|.
T Consensus        83 g~id~li~~ag~   94 (260)
T PRK06198         83 GRLDALVNAAGL   94 (260)
T ss_pred             CCCCEEEECCCc
Confidence            279999999874

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.023  Score=45.32  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+.+++++++.+..    .+.+...   .+|..+  ..++...+++... .
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~~   84 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD--YAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 9999999999889999 899998887655433    2223221   124433  2333343443321 2


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      .++|++|.+.|
T Consensus        85 ~~iD~vi~~ag   95 (264)
T PRK07576         85 GPIDVLVSGAA   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            37899998876

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.47  E-value=0.032  Score=43.59  Aligned_cols=79  Identities=13%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH-HHHHhcCCce-EeCCCCCCCchHHHHHHHhhCC-CCccEE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK-EKGEAFGMTD-FINPDDEPNKSISELVKGITHG-MGVDYC  145 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~-~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~-~~~d~v  145 (254)
                      +.++||+|+ |++|...++.+...|+ +|+.+++++++. +.++..+... ..|..+  .++....+.+.... .++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST--NAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC--HHHHHHHHHHHHhhCCCccEE
Confidence            357999986 8999999998888999 899988876532 3344455322 123332  23333444433221 269999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            998874

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=96.47  E-value=0.025  Score=42.53  Aligned_cols=95  Identities=20%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ++++||-+|+|. |..++.+++.....+|++++.+++..+.+++    .+.+.+ ....   .+..+    +.....||+
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i-~~i~---~d~~~----~~~~~~fD~  112 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNV-EIVN---GRAED----FQHEEQFDV  112 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCe-EEEe---cchhh----ccccCCccE
Confidence            378899888754 5666666665543489999999887766543    443321 1111   22222    122348999


Q ss_pred             EEEcC-CC-hhHHHHHHHHcccCCcEEEEEc
Q 025336          145 CFECT-GV-PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       145 v~d~~-g~-~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      |+-.. .. +..++.+.+.++++ |+++..-
T Consensus       113 I~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  142 (181)
T TIGR00138       113 ITSRALASLNVLLELTLNLLKVG-GYFLAYK  142 (181)
T ss_pred             EEehhhhCHHHHHHHHHHhcCCC-CEEEEEc
Confidence            98532 22 33566778889999 9988763

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.022  Score=45.08  Aligned_cols=80  Identities=20%  Similarity=0.166  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+.+++++++.+.+.    +.+... .  .|..+  .++....+.++.. .
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD--EAYAKALVALAVERF   81 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            3678999986 8999999998889999 8999988877665442    233222 2  23333  2223333333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        82 ~~id~li~~ag~   93 (254)
T PRK07478         82 GGLDIAFNNAGT   93 (254)
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.021  Score=45.36  Aligned_cols=79  Identities=13%  Similarity=0.074  Sum_probs=50.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCC--c-eE--eCCCCCCCchHHHHHHHhhC-CCC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGM--T-DF--INPDDEPNKSISELVKGITH-GMG  141 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~--~-~v--~~~~~~~~~~~~~~i~~~~~-~~~  141 (254)
                      +.++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.+ +..  . ..  .|..+  .+++.+.+.++.. ...
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD--ADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC--HHHHHHHHHHHHHhCCC
Confidence            357999986 9999999988888899 89999888776654432 211  1 11  23332  2333333333221 126


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        79 id~lv~~ag~   88 (257)
T PRK07024         79 PDVVIANAGI   88 (257)
T ss_pred             CCEEEECCCc
Confidence            8999998873

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.028  Score=44.06  Aligned_cols=80  Identities=13%  Similarity=0.076  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ...++||+|+ |.+|..+++.+...|. +|+++++++++.+.+.+    .+... +  .|..+  .+++...+.+... .
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN--PEAIAPGIAELLEQF   81 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4568999986 9999999999999999 89999998766554422    22221 2  23332  2333333333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|.++.+.|.
T Consensus        82 ~~id~lv~~ag~   93 (241)
T PRK07454         82 GCPDVLINNAGM   93 (241)
T ss_pred             CCCCEEEECCCc
Confidence            269999999874

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.46  E-value=0.017  Score=45.73  Aligned_cols=79  Identities=18%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--eE--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--DF--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      .+++++|+|+   +++|.+.++.+...|+ +|+.+.++++..+.++++...  ..  .|..+  .++..+.+.+... ..
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g   82 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS--DESIERAFATIKERVG   82 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC--HHHHHHHHHHHHHHhC
Confidence            4678999986   3899999988888999 899887774333334443211  11  23332  2333333333321 12


Q ss_pred             CccEEEEcCC
Q 025336          141 GVDYCFECTG  150 (254)
Q Consensus       141 ~~d~v~d~~g  150 (254)
                      .+|+++++.|
T Consensus        83 ~iD~lv~nAg   92 (252)
T PRK06079         83 KIDGIVHAIA   92 (252)
T ss_pred             CCCEEEEccc
Confidence            7999999887

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.46  E-value=0.024  Score=45.04  Aligned_cols=80  Identities=20%  Similarity=0.261  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCc-eE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMT-DF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+.    ..+.. ..  .|..+  .+.+.+.+.++.. .
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d--~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD--EADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4678999986 9999999999888999 8999988877655443    22322 12  23333  2233332333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|.++.+.|.
T Consensus        88 ~~id~vi~~ag~   99 (259)
T PRK08213         88 GHVDILVNNAGA   99 (259)
T ss_pred             CCCCEEEECCCC
Confidence            278999998874

>TIGR00477 tehB tellurite resistance protein TehB

Probab=96.45  E-value=0.013  Score=44.62  Aligned_cols=97  Identities=16%  Similarity=0.285  Sum_probs=58.7

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ......++.+||-+|+|. |..+..+++ .|. +|+++|.+++-.+.+++.    +..  +....   .+... . .. .
T Consensus        24 ~~~~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~---~d~~~-~-~~-~   92 (195)
T TIGR00477        24 EAVKTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLP--LRTDA---YDINA-A-AL-N   92 (195)
T ss_pred             HHhccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEe---ccchh-c-cc-c
Confidence            444455567899998764 667777776 477 899999998877766542    222  11111   11110 0 11 2


Q ss_pred             CCCccEEEEcCC-----C---hhHHHHHHHHcccCCcEEEEE
Q 025336          139 GMGVDYCFECTG-----V---PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       139 ~~~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~  172 (254)
                       ..||+|+.+.-     .   +..+..+.+.|+++ |.++.+
T Consensus        93 -~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~  132 (195)
T TIGR00477        93 -EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIV  132 (195)
T ss_pred             -CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEE
Confidence             27999986421     1   23567888889999 985554

Part of a tellurite-reducing operon tehA and tehB

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.021  Score=44.48  Aligned_cols=74  Identities=20%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +.++||.|+ |.+|...++.+...|. +|++++++.++.     .... ...|..+  .+...+.+.++....++|.++.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-----~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~d~vi~   74 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAIDD-----FPGELFACDLAD--IEQTAATLAQINEIHPVDAIVN   74 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCcccc-----cCceEEEeeCCC--HHHHHHHHHHHHHhCCCcEEEE
Confidence            568999987 9999999999999999 899998876541     1211 1223333  2334444444433337899999


Q ss_pred             cCCC
Q 025336          148 CTGV  151 (254)
Q Consensus       148 ~~g~  151 (254)
                      +.|.
T Consensus        75 ~ag~   78 (234)
T PRK07577         75 NVGI   78 (234)
T ss_pred             CCCC
Confidence            8874

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.44  E-value=0.02  Score=45.84  Aligned_cols=78  Identities=24%  Similarity=0.229  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHH----HHhcC-C-ceEeCCCCCCCchHH---HHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEK----GEAFG-M-TDFINPDDEPNKSIS---ELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~----~~~~g-~-~~v~~~~~~~~~~~~---~~i~~~~~  138 (254)
                      +|+.|||+|+ +++|++.++=...+|+ +++..|.+++..+.    .++.| + ..+.|-.+  .++..   +++++.. 
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~--~eei~~~a~~Vk~e~-  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD--REEIYRLAKKVKKEV-  112 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC--HHHHHHHHHHHHHhc-
Confidence            6899999987 7999988877777888 88888887754443    34445 2 23344443  23433   3444432 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      | .+|++++.+|-
T Consensus       113 G-~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 G-DVDILVNNAGI  124 (300)
T ss_pred             C-CceEEEecccc
Confidence            2 89999999985

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.056  Score=43.88  Aligned_cols=80  Identities=15%  Similarity=0.092  Sum_probs=48.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc-HHH----HHhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK-KEK----GEAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~-~~~----~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++ .+.    ++..+... +  .|..+  ...+...+.+... 
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~i~~~  121 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD--EAFCKDAVEETVRE  121 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4678999987 8999999988888899 88888776532 222    22234322 1  23332  1222232332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|++|.+.|.
T Consensus       122 ~~~iD~lI~~Ag~  134 (290)
T PRK06701        122 LGRLDILVNNAAF  134 (290)
T ss_pred             cCCCCEEEECCcc
Confidence            1278999998874

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.43  E-value=0.016  Score=44.68  Aligned_cols=101  Identities=17%  Similarity=0.215  Sum_probs=62.8

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ...+++++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++    .+...+ +...   .+...   .+..
T Consensus        72 ~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v-~~~~---~d~~~---~~~~  141 (212)
T PRK00312         72 ELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNV-SVRH---GDGWK---GWPA  141 (212)
T ss_pred             HhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCce-EEEE---CCccc---CCCc
Confidence            567788999999998764 55555556553 4 79999999877766654    343221 1111   11111   1112


Q ss_pred             CCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...||+|+-..........+.+.|+++ |+++..-.
T Consensus       142 ~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~~~  176 (212)
T PRK00312        142 YAPFDRILVTAAAPEIPRALLEQLKEG-GILVAPVG  176 (212)
T ss_pred             CCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEEEc
Confidence            237999986555444567788899999 98876433

>PRK05717 oxidoreductase; Validated

Probab=96.43  E-value=0.025  Score=44.83  Aligned_cols=80  Identities=18%  Similarity=0.173  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.+++|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ +.++...   ..|..+  ..+....+.++.. ..++
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD--EAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999986 9999999998888999 899988876655443 3344221   223333  1223233333321 1269


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |++|.+.|.
T Consensus        86 d~li~~ag~   94 (255)
T PRK05717         86 DALVCNAAI   94 (255)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.033  Score=44.08  Aligned_cols=80  Identities=16%  Similarity=0.142  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc-HHH----HHhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK-KEK----GEAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~-~~~----~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ +++|..+++.+...|+ +|++++++.++ .+.    ++..+... .  .|..+  .++....+.+... 
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~   83 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS--KADLRAAVARTEAE   83 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 8999999999999999 89888876532 222    22334221 2  23332  2333333333221 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        84 ~g~id~li~~ag~   96 (254)
T PRK06114         84 LGALTLAVNAAGI   96 (254)
T ss_pred             cCCCCEEEECCCC
Confidence            2379999999874

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.42  E-value=0.037  Score=46.30  Aligned_cols=36  Identities=31%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .+.+|||+|+|++|..+++.+...|.+++..+|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            457899999999999999999999999999998765

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.42  E-value=0.019  Score=43.82  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      +..+|+|.|+|++|...++.+...|.++++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            34679999999999999999999999889999887

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.42  E-value=0.012  Score=43.28  Aligned_cols=78  Identities=21%  Similarity=0.261  Sum_probs=49.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC--cccHHHH----HhcCCce-Ee--CCCCCCCchHHHHHHHhh-CCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN--PWKKEKG----EAFGMTD-FI--NPDDEPNKSISELVKGIT-HGM  140 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~--~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~-~~~  140 (254)
                      ++||+|+ +++|...++.+...|..+|+.+.++  .++.+.+    +..+... ++  |..+  .++....+.+.. ...
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSD--PESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTS--HHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence            6899986 9999998888877777588888887  3434333    3344322 22  2222  234444444433 233


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      .+|++|.+.|.
T Consensus        80 ~ld~li~~ag~   90 (167)
T PF00106_consen   80 PLDILINNAGI   90 (167)
T ss_dssp             SESEEEEECSC
T ss_pred             ccccccccccc
Confidence            89999999886

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.025  Score=43.91  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +++|+|+ |++|...++.+...|+ +|+.+++++++.+.+ ++.+...+ .|..+  .+++.+.+.++. + .+|+++++
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~-~-~id~lv~~   76 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD--PASLEEARGLFP-H-HLDTIVNV   76 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC--HHHHHHHHHHHh-h-cCcEEEEC
Confidence            4899986 8999999999888999 899998887776654 33443322 34443  123333333332 2 68999988


Q ss_pred             CC
Q 025336          149 TG  150 (254)
Q Consensus       149 ~g  150 (254)
                      .|
T Consensus        77 ag   78 (223)
T PRK05884         77 PA   78 (223)
T ss_pred             CC
Confidence            65

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.41  E-value=0.11  Score=35.72  Aligned_cols=92  Identities=16%  Similarity=0.167  Sum_probs=60.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCCh
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  152 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  152 (254)
                      |+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|...+. .+    ..-.+.+++. +-..++.++-+.+..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~~i~-gd----~~~~~~l~~a-~i~~a~~vv~~~~~d   73 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVEVIY-GD----ATDPEVLERA-GIEKADAVVILTDDD   73 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSEEEE-S-----TTSHHHHHHT-TGGCESEEEEESSSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhccccccc-cc----chhhhHHhhc-CccccCEEEEccCCH
Confidence            5788999999999999999776 899999999999999988855333 22    1122233333 223788888888765


Q ss_pred             hHH---HHHHHHcccCCcEEEEE
Q 025336          153 SLL---SEALETTKVGKGKVIVI  172 (254)
Q Consensus       153 ~~~---~~~~~~l~~~~G~~v~~  172 (254)
                      ..-   -..++.+.+. .+++..
T Consensus        74 ~~n~~~~~~~r~~~~~-~~ii~~   95 (116)
T PF02254_consen   74 EENLLIALLARELNPD-IRIIAR   95 (116)
T ss_dssp             HHHHHHHHHHHHHTTT-SEEEEE
T ss_pred             HHHHHHHHHHHHHCCC-CeEEEE
Confidence            321   1233344555 565544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.41  E-value=0.026  Score=45.02  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEe--CCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFI--NPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~--~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+   +++|.+.++.+...|+ +|+.+.+.++..+.+++    .+....+  |-.+  .++....+.+... 
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   81 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVAS--DDEINQVFADLGKH   81 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999983   5899999998889999 88887655332233322    2322222  3332  2334434433322 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        82 ~g~iD~lVnnAG~   94 (261)
T PRK08690         82 WDGLDGLVHSIGF   94 (261)
T ss_pred             hCCCcEEEECCcc
Confidence            1379999998864

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.026  Score=44.47  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c--CCc-eEe--CCCCCCCchHHHHHHHhh-CCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F--GMT-DFI--NPDDEPNKSISELVKGIT-HGM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~--g~~-~v~--~~~~~~~~~~~~~i~~~~-~~~  140 (254)
                      ++.+++|+|+ |.+|..+++.+...|+ +|+.+.++.++.+...+ .  +.. .++  |..+  .....+.+.++. ...
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~   80 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS--AEAVEALVDFVAARWG   80 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHcC
Confidence            3678999987 9999999988888899 89999888765543322 2  221 122  3332  233333333321 113


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++.+.|.
T Consensus        81 ~id~vi~~ag~   91 (252)
T PRK06138         81 RLDVLVNNAGF   91 (252)
T ss_pred             CCCEEEECCCC
Confidence            79999998884

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.026  Score=45.31  Aligned_cols=79  Identities=19%  Similarity=0.300  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-h---cC--Cc-eEe--CCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-A---FG--MT-DFI--NPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~---~g--~~-~v~--~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+... +   .+  .. .++  |..+  .+++...+.+...
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD--EDQVARAVDAATA   82 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence            3678999987 9999999999999999 8999988876544332 1   11  11 122  3332  2333333333221


Q ss_pred             -CCCccEEEEcCC
Q 025336          139 -GMGVDYCFECTG  150 (254)
Q Consensus       139 -~~~~d~v~d~~g  150 (254)
                       ..++|++|.+.|
T Consensus        83 ~~~~~d~li~~ag   95 (276)
T PRK05875         83 WHGRLHGVVHCAG   95 (276)
T ss_pred             HcCCCCEEEECCC
Confidence             237899999887

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.022  Score=45.22  Aligned_cols=80  Identities=19%  Similarity=0.167  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh---cCCc-eE--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA---FGMT-DF--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+..++   .+.. .+  .|..+  .+++...+.++.. ..
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD--DAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhcC
Confidence            4678999987 8999999988888999 78888888766543332   3422 12  23332  2333333333322 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|.+|.+.|.
T Consensus        83 ~id~vi~~ag~   93 (258)
T PRK08628         83 RIDGLVNNAGV   93 (258)
T ss_pred             CCCEEEECCcc
Confidence            79999999983

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.39  E-value=0.018  Score=48.42  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .+.+|+|+|+|++|..+++.+...|.++++.+|.+.
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            456899999999999999999999998999998763

>PRK04266 fibrillarin; Provisional

Probab=96.39  E-value=0.072  Score=41.55  Aligned_cols=102  Identities=19%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC--c--eEeCCCCCCCchHHHHHHHhhC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM--T--DFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~--~--~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      +...++++++||=.|+|+ |..+..+++..+..+|++++.+++.++.+.+...  .  ..+..+.   .+. .....+ .
T Consensus        66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~---~~~-~~~~~l-~  139 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA---RKP-ERYAHV-V  139 (226)
T ss_pred             hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC---CCc-chhhhc-c
Confidence            357888999999888754 5566667776653489999999987765433211  1  1221111   110 000111 1


Q ss_pred             CCCccEEEEcCCChh----HHHHHHHHcccCCcEEEEE
Q 025336          139 GMGVDYCFECTGVPS----LLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~  172 (254)
                      . .||+++-....+.    .+..+.+.|+|+ |++++.
T Consensus       140 ~-~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~  175 (226)
T PRK04266        140 E-KVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA  175 (226)
T ss_pred             c-cCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            2 6999995443321    367888899999 998874

>PRK08317 hypothetical protein; Provisional

Probab=96.38  E-value=0.019  Score=44.88  Aligned_cols=102  Identities=23%  Similarity=0.342  Sum_probs=68.2

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhc----CCc-eEeCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAF----GMT-DFINPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~i~~  135 (254)
                      .....+.++++||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.    +.. .++..+.   .+.     .
T Consensus        12 ~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~-----~   82 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGL-----P   82 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccC-----C
Confidence            3567788999999999875 888889988774 23899999999888887664    111 1111110   110     1


Q ss_pred             hhCCCCccEEEEcC-----C-ChhHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFECT-----G-VPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +.. ..||+|+-..     . ....+..+.+.++++ |.++....
T Consensus        83 ~~~-~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  125 (241)
T PRK08317         83 FPD-GSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLDT  125 (241)
T ss_pred             CCC-CCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEec
Confidence            122 3799988532     1 233678889999999 99887653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.38  E-value=0.026  Score=43.60  Aligned_cols=104  Identities=17%  Similarity=0.157  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceEe-C------CCCCCCchHHHHHHHhh-
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDFI-N------PDDEPNKSISELVKGIT-  137 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v~-~------~~~~~~~~~~~~i~~~~-  137 (254)
                      +.++.+||+.|+|. |.-++-+|. .|+ +|++++.++.-.+.+. +.+..... +      ++.....-....+.++. 
T Consensus        32 ~~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        32 LPAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            35678999999875 777777775 699 9999999998777642 22221000 0      00000000000111111 


Q ss_pred             -CCCCccEEEEcCCC--------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          138 -HGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       138 -~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       ....||.++|+..-        +..+..+.++|+|+ |+++..+.
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~  153 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITL  153 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEE
Confidence             11269999996531        23577899999999 98666544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.38  E-value=0.025  Score=44.75  Aligned_cols=80  Identities=18%  Similarity=0.305  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+    +..|... .  .|..+  .+++...+.+.. ..
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD--HDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            4678999986 9999999998888899 899998887655433    2223221 1  23333  133333333221 12


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|.+|.+.|.
T Consensus        86 ~~~d~li~~ag~   97 (255)
T PRK07523         86 GPIDILVNNAGM   97 (255)
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.37  E-value=0.038  Score=43.89  Aligned_cols=77  Identities=16%  Similarity=0.239  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-----cCCc-eE--eCCCCCCCchHHHHHHHhhCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-----FGMT-DF--INPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----~g~~-~v--~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ++.+++|.|+ +++|...++.+...|+ +|+++++++++.+.+.+     .+.. ..  .|..+  .++....+.+.   
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~---   79 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS--PEAREQLAAEA---   79 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHh---
Confidence            4678999987 8999999998888999 99999888776654322     1321 12  23332  12333333222   


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      ..+|.++++.|.
T Consensus        80 g~id~lv~~ag~   91 (259)
T PRK06125         80 GDIDILVNNAGA   91 (259)
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.37  E-value=0.026  Score=44.90  Aligned_cols=78  Identities=15%  Similarity=0.195  Sum_probs=49.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-CCC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-GMG  141 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~  141 (254)
                      .++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+... +  .|..+  ...+...+.+... ..+
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD--AEACERLIEAAVARFGG   78 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHcCC
Confidence            57899987 9999999999999999 899998887654433    2233321 1  23332  1233333333211 127


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++.+.|.
T Consensus        79 id~vi~~ag~   88 (263)
T PRK06181         79 IDILVNNAGI   88 (263)
T ss_pred             CCEEEECCCc
Confidence            8999999874

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.016  Score=46.38  Aligned_cols=77  Identities=18%  Similarity=0.276  Sum_probs=49.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhC-CCCccEEE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYCF  146 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  146 (254)
                      +.+++|+|+ |.+|...++.+...|+ +|+++++++++.+..  .+... ..|..+  .+++...+.+... ...+|+++
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~--~~~~~~~~D~~d--~~~~~~~~~~~~~~~g~~d~li   78 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPI--PGVELLELDVTD--DASVQAAVDEVIARAGRIDVLV   78 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccc--CCCeeEEeecCC--HHHHHHHHHHHHHhCCCCCEEE
Confidence            467999987 9999999988888899 899998876554322  12221 224433  2334444433321 22799999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      ++.|.
T Consensus        79 ~~ag~   83 (270)
T PRK06179         79 NNAGV   83 (270)
T ss_pred             ECCCC
Confidence            99984

>PRK06720 hypothetical protein; Provisional

Probab=96.35  E-value=0.042  Score=40.81  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-Ee--CCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-FI--NPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      ++.+++|.|+ +++|...+..+...|+ +|++++++.+..+..    +..+... .+  |..+  ...+.+.+.+.. ..
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~v~~~~~~~   91 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEK--QGDWQRVISITLNAF   91 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 7899999988888999 899998876654332    2234321 22  3222  122233222211 12


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        92 G~iDilVnnAG~  103 (169)
T PRK06720         92 SRIDMLFQNAGL  103 (169)
T ss_pred             CCCCEEEECCCc
Confidence            278999988874

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.34  E-value=0.063  Score=44.05  Aligned_cols=90  Identities=14%  Similarity=0.215  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|+..++.++..|+ +|++.+++.++..     +...+..  .   .++.+.+    .  ..|+++.+
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~~--~---~~l~e~l----~--~aDvvv~~  197 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFAG--R---EELSAFL----S--QTRVLINL  197 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeecc--c---ccHHHHH----h--cCCEEEEC
Confidence            57899999999999999999999999 9999977654321     1111111  0   2222222    1  56777776


Q ss_pred             CCChhHH-----HHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPSLL-----SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~~~-----~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ....+..     ...+..++++ ..+|-++...
T Consensus       198 lPlt~~T~~li~~~~l~~mk~g-a~lIN~aRG~  229 (312)
T PRK15469        198 LPNTPETVGIINQQLLEQLPDG-AYLLNLARGV  229 (312)
T ss_pred             CCCCHHHHHHhHHHHHhcCCCC-cEEEECCCcc
Confidence            6543221     2345567776 6766666543

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.021  Score=45.17  Aligned_cols=80  Identities=21%  Similarity=0.291  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCc-eE--eCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMT-DF--INPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      ++.+++|.|+ |++|...++.+...|+ +|+.+++++++.+.+    ++.+.. ..  .|..+  ..++...+.+.. ..
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   82 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTR--DAEVKALVEQTIAAY   82 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 9999999988888899 899998887664433    233322 12  23332  122323222221 11


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++.+.|.
T Consensus        83 g~id~li~~ag~   94 (253)
T PRK06172         83 GRLDYAFNNAGI   94 (253)
T ss_pred             CCCCEEEECCCC
Confidence            278999998874

>PRK07411 hypothetical protein; Validated

Probab=96.34  E-value=0.019  Score=48.70  Aligned_cols=36  Identities=25%  Similarity=0.245  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ...+|||.|+|++|..+++.+-..|.++++.+|.+.
T Consensus        37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            356899999999999999999999999999987764

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.047  Score=43.93  Aligned_cols=80  Identities=18%  Similarity=0.207  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    +..+...   ..|..+  ..++...+.+.. ..
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   81 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH--REEVTHLADEAFRLL   81 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 9999999999899999 899888887665543    2234322   123332  233333333321 11


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        82 g~id~li~nAg~   93 (275)
T PRK05876         82 GHVDVVFSNAGI   93 (275)
T ss_pred             CCCCEEEECCCc
Confidence            278999998873

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.022  Score=45.16  Aligned_cols=80  Identities=20%  Similarity=0.114  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+.+    .+..   ...|..+  .+++...+.+... -
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD--EDQCANLVALALERF   80 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999999999 89999888766554422    2322   1223332  2333333333211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++.+.|.
T Consensus        81 g~~d~vi~~ag~   92 (258)
T PRK07890         81 GRVDALVNNAFR   92 (258)
T ss_pred             CCccEEEECCcc
Confidence            278999998874

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.031  Score=44.03  Aligned_cols=80  Identities=21%  Similarity=0.251  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCc-e--EeCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMT-D--FINPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~-~--v~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++++..+.+.    ..+.. .  ..|..+  .........+.. ..
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD--PDSAKAMADATVSAF   81 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 9999999998888999 8999988876544332    12221 1  233333  122222222221 11


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|.+.|.
T Consensus        82 ~~id~vi~~ag~   93 (250)
T PRK07774         82 GGIDYLVNNAAI   93 (250)
T ss_pred             CCCCEEEECCCC
Confidence            269999998883

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.32  E-value=0.03  Score=44.61  Aligned_cols=79  Identities=16%  Similarity=0.231  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-G--TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g--~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.+++|+|+ +  ++|.+.++.+...|+ +|+..+++++..+.++    +.|....  .|-.+  .++....+.+... 
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN--PKSISNLFDDIKEK   83 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC--HHHHHHHHHHHHHH
Confidence            4678999987 4  799999988888999 8888876632122222    2343222  34443  2333333333322 


Q ss_pred             CCCccEEEEcCC
Q 025336          139 GMGVDYCFECTG  150 (254)
Q Consensus       139 ~~~~d~v~d~~g  150 (254)
                      ...+|+++++.|
T Consensus        84 ~g~iDilVnnag   95 (260)
T PRK06603         84 WGSFDFLLHGMA   95 (260)
T ss_pred             cCCccEEEEccc
Confidence            127999999876

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.32  E-value=0.073  Score=44.13  Aligned_cols=37  Identities=19%  Similarity=0.420  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWK  106 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~  106 (254)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.+.
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            57899999999999999999999999 99999887543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=96.31  E-value=0.033  Score=42.47  Aligned_cols=99  Identities=23%  Similarity=0.198  Sum_probs=74.2

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      .+..+.+-..|.=+|.|+ |...-.+++......+.+++.|++-++.+++...+.-+...         .++.+......
T Consensus        24 a~Vp~~~~~~v~DLGCGp-GnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~a---------Dl~~w~p~~~~   93 (257)
T COG4106          24 ARVPLERPRRVVDLGCGP-GNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEA---------DLRTWKPEQPT   93 (257)
T ss_pred             hhCCccccceeeecCCCC-CHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecc---------cHhhcCCCCcc
Confidence            445555667777778886 88899999988866999999999999999887765444332         35666666688


Q ss_pred             cEEEEcC------CChhHHHHHHHHcccCCcEEEEE
Q 025336          143 DYCFECT------GVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       143 d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      |++|-+.      ..+..+..++..++|+ |.+.+-
T Consensus        94 dllfaNAvlqWlpdH~~ll~rL~~~L~Pg-g~LAVQ  128 (257)
T COG4106          94 DLLFANAVLQWLPDHPELLPRLVSQLAPG-GVLAVQ  128 (257)
T ss_pred             chhhhhhhhhhccccHHHHHHHHHhhCCC-ceEEEE
Confidence            8888443      2355788999999999 887553

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.03  Score=44.47  Aligned_cols=80  Identities=19%  Similarity=0.187  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hc-----CCc-eE--eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AF-----GMT-DF--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~-----g~~-~v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.++||.|+ |++|..+++.+...|+ +|+.+++++++.+.+. ++     +.. .+  .|..+  .+++...+.++..
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD--AASVAAAVAAAEE   82 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4678999986 8999999999989999 8999988876655432 21     211 11  23332  2333333333221


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       -.++|+++++.|.
T Consensus        83 ~~g~id~li~~ag~   96 (260)
T PRK07063         83 AFGPLDVLVNNAGI   96 (260)
T ss_pred             HhCCCcEEEECCCc
Confidence             1279999998873

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.30  E-value=0.032  Score=44.85  Aligned_cols=79  Identities=24%  Similarity=0.194  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCc-eE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMT-DF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.+++|+|+ |++|+..++.+...|+ +|+++++++++.+.+.    ..+.. ..  .|..+  ..+....+.+... -
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   85 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD--KESLEQARQQILEDF   85 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 9999999999889999 8999988876554332    23322 11  23332  1233333333221 1


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      .++|+++.+.|
T Consensus        86 g~id~li~~ag   96 (278)
T PRK08277         86 GPCDILINGAG   96 (278)
T ss_pred             CCCCEEEECCC
Confidence            37999999887

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.30  E-value=0.025  Score=48.01  Aligned_cols=36  Identities=19%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ...+|||+|+|++|..++..+...|.+++..+|.+.
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            456899999999999999999999998999887764

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.13  Score=40.63  Aligned_cols=105  Identities=16%  Similarity=0.204  Sum_probs=60.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhh--
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGID-KNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGIT--  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~-~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~--  137 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|++.. +++++.+.+    +..+... .  .|..+  .++....+.++.  
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES--LHGVEALYSSLDNE   79 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCC--HHHHHHHHHHHHHH
Confidence            3678999986 8999999999999999 777764 443433322    2223221 1  12222  122222222211  


Q ss_pred             -----CCCCccEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          138 -----HGMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       138 -----~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                           +..++|+++++.|...                         .+..+++.+... |+++.+++...
T Consensus        80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-g~iv~isS~~~  148 (252)
T PRK12747         80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-SRIINISSAAT  148 (252)
T ss_pred             hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-CeEEEECCccc
Confidence                 1237999999887310                         122345556667 89998887544

>PRK08643 acetoin reductase; Validated

Probab=96.29  E-value=0.032  Score=44.15  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=50.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      +.++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+.    ..+... .  .|..+  ++.+.+.+.+... ..
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD--RDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            468899986 9999999999999999 8999988876654432    223221 1  23333  2333333333221 13


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++.+.|.
T Consensus        79 ~id~vi~~ag~   89 (256)
T PRK08643         79 DLNVVVNNAGV   89 (256)
T ss_pred             CCCEEEECCCC
Confidence            79999998864

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.038  Score=44.31  Aligned_cols=78  Identities=14%  Similarity=0.149  Sum_probs=51.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc-CCc-e--EeCCCCCCCchHHHHHHHhh-CCCCccE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF-GMT-D--FINPDDEPNKSISELVKGIT-HGMGVDY  144 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~-g~~-~--v~~~~~~~~~~~~~~i~~~~-~~~~~d~  144 (254)
                      .++||+|+ |.+|..+++.+...|. +|+++.+++++.+.++.. +.. .  ..|..+  .+.+...+.+.. ...++|+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   79 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD--SAAVRAVVDRAFAALGRIDV   79 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            47999986 9999999998888999 899998988776665442 221 1  123333  122333333321 1237899


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      +|.+.|.
T Consensus        80 vi~~ag~   86 (276)
T PRK06482         80 VVSNAGY   86 (276)
T ss_pred             EEECCCC
Confidence            9998874

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.036  Score=45.50  Aligned_cols=80  Identities=23%  Similarity=0.275  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-h----cC-Cc-e--EeCCCCCCCchHHHHHHHhh-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-A----FG-MT-D--FINPDDEPNKSISELVKGIT-  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~----~g-~~-~--v~~~~~~~~~~~~~~i~~~~-  137 (254)
                      .+.+++|+|+ +++|..+++.+...|+ +|+.+++++++.+.+. +    .+ .. .  ..|..+  .++....+.++. 
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d--~~sv~~~~~~~~~   89 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS--LASVAALGEQLRA   89 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC--HHHHHHHHHHHHH
Confidence            4678999987 8999999988888999 8999989877655432 1    11 11 1  124433  122333333322 


Q ss_pred             CCCCccEEEEcCCC
Q 025336          138 HGMGVDYCFECTGV  151 (254)
Q Consensus       138 ~~~~~d~v~d~~g~  151 (254)
                      ...++|++|++.|.
T Consensus        90 ~~~~iD~li~nAG~  103 (313)
T PRK05854         90 EGRPIHLLINNAGV  103 (313)
T ss_pred             hCCCccEEEECCcc
Confidence            12379999998874

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.092  Score=40.57  Aligned_cols=74  Identities=12%  Similarity=0.115  Sum_probs=46.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEe--CCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFI--NPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~--~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .++||+|+ |.+|..++..+... + +|++++++.++.+.+.+ .....++  |..+  ...+.+.+.+.   .++|.++
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~---~~id~vi   76 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDLTD--PEAIAAAVEQL---GRLDVLV   76 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCCCC--HHHHHHHHHhc---CCCCEEE
Confidence            57999986 99999988777766 7 89999998776555442 2111222  3322  12222222221   2799999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      .+.|.
T Consensus        77 ~~ag~   81 (227)
T PRK08219         77 HNAGV   81 (227)
T ss_pred             ECCCc
Confidence            99874

>PLN02244 tocopherol O-methyltransferase

Probab=96.28  E-value=0.015  Score=48.35  Aligned_cols=98  Identities=18%  Similarity=0.291  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      +++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++.    +...-+....   .+... + .+ ....||
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~---~D~~~-~-~~-~~~~FD  188 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQV---ADALN-Q-PF-EDGQFD  188 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---cCccc-C-CC-CCCCcc
Confidence            6788999988764 6677788887788 999999999877766542    3211011110   11110 0 11 223799


Q ss_pred             EEEEcCC-----C-hhHHHHHHHHcccCCcEEEEEcc
Q 025336          144 YCFECTG-----V-PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       144 ~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +|+-.-.     . ...+..+.+.++++ |++++...
T Consensus       189 ~V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~~  224 (340)
T PLN02244        189 LVWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVTW  224 (340)
T ss_pred             EEEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            9985322     1 23577888999999 99987654

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.28  E-value=0.063  Score=40.05  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=29.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +|+|+|+|++|...++.+...|.++++.+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999999998899998875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.28  E-value=0.074  Score=40.12  Aligned_cols=98  Identities=17%  Similarity=0.244  Sum_probs=63.0

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHHHh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVKGI  136 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~  136 (254)
                      ....+.++++||=+|+|. |..++.+++.....+|++++.+++..+.+++    ++...  ++..      +...   .+
T Consensus        25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~------d~~~---~~   94 (187)
T PRK08287         25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG------EAPI---EL   94 (187)
T ss_pred             HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec------Cchh---hc
Confidence            455677889999888764 6777777776543389999999987777754    33221  2221      1111   11


Q ss_pred             hCCCCccEEEEcCC-C--hhHHHHHHHHcccCCcEEEEEc
Q 025336          137 THGMGVDYCFECTG-V--PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       137 ~~~~~~d~v~d~~g-~--~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                       . ..||+++.... .  ...+..+.+.|+++ |+++...
T Consensus        95 -~-~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~~  131 (187)
T PRK08287         95 -P-GKADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLTF  131 (187)
T ss_pred             -C-cCCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEEE
Confidence             2 27999985432 1  23567788899999 9987643

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.28  E-value=0.065  Score=43.22  Aligned_cols=87  Identities=17%  Similarity=0.341  Sum_probs=55.6

Q ss_pred             EEEEEcCCHHHHHH-HHHHHHcCCCeEEEE-cCCccc--HHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           72 SVAVLGLGTVGLGA-VDGARMQGAAKIIGI-DKNPWK--KEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        72 ~vlI~G~g~~G~~~-~~~a~~~g~~~v~~v-~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +|.|+|+|.+|... ..+.+..++ ++.++ +.++++  ++.++++|.....+       +....+    ....+|+|++
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~~-------~~e~ll----~~~dIDaV~i   70 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSAE-------GVDGLL----ANPDIDIVFD   70 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEEC-------CHHHHh----cCCCCCEEEE
Confidence            58899999999854 566655566 55554 445544  45677888654432       222222    2237999999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEE
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      +++.....+.+..++..+  +-++.
T Consensus        71 aTp~~~H~e~a~~al~aG--k~VId   93 (285)
T TIGR03215        71 ATSAKAHARHARLLAELG--KIVID   93 (285)
T ss_pred             CCCcHHHHHHHHHHHHcC--CEEEE
Confidence            999886666776666654  44443

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.28  E-value=0.03  Score=44.39  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-h----cCC--ceEe--CCCCCCCchHHHHHHHhhC-
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-A----FGM--TDFI--NPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~----~g~--~~v~--~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +.++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+. .    .+.  ...+  |..+  .++....+.+... 
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~   78 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS--EQSVLALSRGVDEI   78 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC--HHHHHHHHHHHHHH
Confidence            467999987 8999999999888999 8999988876554332 1    221  1122  3332  1223333333221 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        79 ~~~id~vv~~ag~   91 (259)
T PRK12384         79 FGRVDLLVYNAGI   91 (259)
T ss_pred             cCCCCEEEECCCc
Confidence            1379999998873

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.27  E-value=0.033  Score=45.91  Aligned_cols=79  Identities=23%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcC---Cc-eE--eCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFG---MT-DF--INPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g---~~-~v--~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      .+.+++|+|+ |++|..+++.+...|+ +|++++++.++.+.+ +++.   .. ..  .|..+  ..+....+.++. .+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   81 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD--LDSVRRFVDDFRALG   81 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            4678999986 9999999998888898 899998887765543 2221   11 11  24333  122333333322 12


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      .++|++|++.|
T Consensus        82 ~~iD~li~nAg   92 (322)
T PRK07453         82 KPLDALVCNAA   92 (322)
T ss_pred             CCccEEEECCc
Confidence            36999999887

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.27  E-value=0.058  Score=43.81  Aligned_cols=43  Identities=21%  Similarity=0.190  Sum_probs=36.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM  115 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~  115 (254)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   43 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGA   43 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            37789999999988888888898 89999999988888777664

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=96.27  E-value=0.046  Score=43.73  Aligned_cols=104  Identities=16%  Similarity=0.186  Sum_probs=67.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC--ceEeCCCCCCCchHHHHHHHhhC
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM--TDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      +....+++++.+||=+|+|. |..+..+++..++ +|++++.+++..+.+++...  ..+ ....   .+...  ... .
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i-~~~~---~D~~~--~~~-~  114 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKI-EFEA---NDILK--KDF-P  114 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCce-EEEE---CCccc--CCC-C
Confidence            34667888999999998763 5566677777788 99999999988888776321  111 1111   11110  011 2


Q ss_pred             CCCccEEEE--cC---C---ChhHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCFE--CT---G---VPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~d--~~---g---~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...||+|+.  +.   .   ....+..+.+.|+|+ |+++....
T Consensus       115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~  157 (263)
T PTZ00098        115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDY  157 (263)
T ss_pred             CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            237999985  22   1   123577888999999 99987654

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.032  Score=44.80  Aligned_cols=94  Identities=20%  Similarity=0.204  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh--------cCCce---------------EeCCCCCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA--------FGMTD---------------FINPDDEP  125 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~--------~g~~~---------------v~~~~~~~  125 (254)
                      .++.|+|.|+|++|..++-.+.+.|++++..++-+.-.+.-+..        .|-..               -++.+.  
T Consensus        73 ~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~--  150 (430)
T KOG2018|consen   73 TNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARN--  150 (430)
T ss_pred             cCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHH--
Confidence            46788999999999999999999999888888765544333321        22100               011110  


Q ss_pred             CchHH-HHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCc
Q 025336          126 NKSIS-ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKG  167 (254)
Q Consensus       126 ~~~~~-~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G  167 (254)
                       .-+. +.-.++..| ++|.|+||+.+-++--.++..+-+. |
T Consensus       151 -~l~~~~s~edll~g-nPdFvvDciDNidtKVdLL~y~~~~-~  190 (430)
T KOG2018|consen  151 -MLWTSSSEEDLLSG-NPDFVVDCIDNIDTKVDLLEYCYNH-G  190 (430)
T ss_pred             -hhcCCCchhhhhcC-CCCeEeEhhhhhhhhhHHHHHHHHc-C
Confidence             0000 001223344 7999999999865545666666555 5

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.034  Score=45.40  Aligned_cols=80  Identities=18%  Similarity=0.222  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----Hh-c-CCc-eE--eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EA-F-GMT-DF--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~-~-g~~-~v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.+++|+|+ |++|..+++.+...|+ +|+.++++.++.+.+    ++ . +.. ..  .|..+  .++....+.++..
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~   91 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS--LASVRAAADALRA   91 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHh
Confidence            5678999987 9999999988888899 898888887665432    11 1 111 11  23333  2333333333321


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|++|.+.|.
T Consensus        92 ~~~~iD~li~nAg~  105 (306)
T PRK06197         92 AYPRIDLLINNAGV  105 (306)
T ss_pred             hCCCCCEEEECCcc
Confidence             2379999998873

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.26  E-value=0.11  Score=42.98  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEcCCcccHHHHH-h----cCCceEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGA-RMQGAAKIIGIDKNPWKKEKGE-A----FGMTDFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a-~~~g~~~v~~v~~~~~~~~~~~-~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      +...+++|+|+|..|...+... ...++++|.+.++++++.+.+. +    ++.. +..+     .+..+.+      ..
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~-----~~~~~~~------~~  192 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVV-----NSADEAI------EE  192 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEe-----CCHHHHH------hc
Confidence            3567899999999998777554 4678889999999988776543 2    2332 1112     2233333      27


Q ss_pred             ccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccH
Q 025336          142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNV  184 (254)
Q Consensus       142 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~  184 (254)
                      .|+|+.|++....+ .. ..++++ -.+..+|........++.
T Consensus       193 aDiVi~aT~s~~p~-i~-~~l~~G-~hV~~iGs~~p~~~E~~~  232 (325)
T PRK08618        193 ADIIVTVTNAKTPV-FS-EKLKKG-VHINAVGSFMPDMQELPS  232 (325)
T ss_pred             CCEEEEccCCCCcc-hH-HhcCCC-cEEEecCCCCcccccCCH
Confidence            89999998865332 23 788887 788888876543344444

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.26  E-value=0.068  Score=43.13  Aligned_cols=76  Identities=21%  Similarity=0.242  Sum_probs=54.8

Q ss_pred             CCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           68 EKGSSVAVLGLGT-VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        68 ~~~~~vlI~G~g~-~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      -+|.+++|+|.|. +|...+.++...|+ +|++..+.                   .   .++.+.+      +.+|+++
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~-------------------t---~~L~~~~------~~aDIvI  207 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSR-------------------T---QNLPELV------KQADIIV  207 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCC-------------------c---hhHHHHh------ccCCEEE
Confidence            4788999999876 99999999999999 77776321                   1   2222222      2889999


Q ss_pred             EcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          147 ECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +++|.+..+.  ...++++ ..++.+|..
T Consensus       208 ~AtG~~~~v~--~~~lk~g-avViDvg~n  233 (283)
T PRK14192        208 GAVGKPELIK--KDWIKQG-AVVVDAGFH  233 (283)
T ss_pred             EccCCCCcCC--HHHcCCC-CEEEEEEEe
Confidence            9998765333  3457887 788888754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.25  E-value=0.046  Score=44.11  Aligned_cols=88  Identities=17%  Similarity=0.246  Sum_probs=57.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|.|+|.|.+|...+..++..|. +|++.++++++.+.+.+.|....   ..   .+. +.+      ...|+||-|+..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~---~~---~~~-~~~------~~aDlVilavp~   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDE---AS---TDL-SLL------KDCDLVILALPI   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCccc---cc---CCH-hHh------cCCCEEEEcCCH
Confidence            58899999999998888888898 89999999888888877764211   11   111 111      267888888875


Q ss_pred             hhH---HHHHHHHcccCCcEEEEEcc
Q 025336          152 PSL---LSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       152 ~~~---~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...   ++.+...+.++ -.+..+++
T Consensus        68 ~~~~~~~~~l~~~l~~~-~ii~d~~S   92 (279)
T PRK07417         68 GLLLPPSEQLIPALPPE-AIVTDVGS   92 (279)
T ss_pred             HHHHHHHHHHHHhCCCC-cEEEeCcc
Confidence            432   22333334444 44444443

>PRK07985 oxidoreductase; Provisional

Probab=96.25  E-value=0.1  Score=42.38  Aligned_cols=80  Identities=19%  Similarity=0.068  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc--ccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP--WKKEKGE----AFGMTD---FINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~--~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+.+.++.  ++.+.+.    +.+...   ..|..+  .++....+.+...
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~  124 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD--EKFARSLVHEAHK  124 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999999888999 888876543  2233222    233221   223333  2333333333321


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|+++.+.|.
T Consensus       125 ~~g~id~lv~~Ag~  138 (294)
T PRK07985        125 ALGGLDIMALVAGK  138 (294)
T ss_pred             HhCCCCEEEECCCC
Confidence             2378999988763

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.24  E-value=0.058  Score=46.38  Aligned_cols=103  Identities=13%  Similarity=0.193  Sum_probs=65.0

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eE--eCCCCCCCchHHHHHHH
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DF--INPDDEPNKSISELVKG  135 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~  135 (254)
                      ....+++|++||=.|+|+ |..++.+++..+..+|++++.++++.+.+++    +|.. .+  .+...   ....    .
T Consensus       232 ~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~~----~  303 (426)
T TIGR00563       232 TWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGPS----Q  303 (426)
T ss_pred             HHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---cccc----c
Confidence            445678899999888754 5555566666553389999999998887653    5654 22  22111   1110    0


Q ss_pred             hhCCCCccEEE-E--cCCC-------------------------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ......||.|+ |  |+|.                         ...+..+++.++++ |+++....
T Consensus       304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvystc  369 (426)
T TIGR00563       304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYATC  369 (426)
T ss_pred             cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            11223799998 4  5542                         12567788899999 99887644

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.24  E-value=0.051  Score=43.00  Aligned_cols=80  Identities=21%  Similarity=0.277  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc--HHHHHhcCCce---EeCCCCCCCchHHHHHHHhhC-CCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK--KEKGEAFGMTD---FINPDDEPNKSISELVKGITH-GMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~--~~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~  141 (254)
                      ++.++||+|+ +++|.+.++.+...|+ +|+++++++..  .+.+++.+...   ..|..+  .++..+.+.+... ..+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ--QKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC--HHHHHHHHHHHHHHcCC
Confidence            4688999986 8999999999999999 88888765421  22233444322   234443  2333333333221 127


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        84 iD~lv~~ag~   93 (251)
T PRK12481         84 IDILINNAGI   93 (251)
T ss_pred             CCEEEECCCc
Confidence            9999998874

>PLN03075 nicotianamine synthase; Provisional

Probab=96.24  E-value=0.029  Score=45.29  Aligned_cols=98  Identities=11%  Similarity=0.108  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcC-C----ceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFG-M----TDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g-~----~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      +.++|+-+|+|+.+..++-+++.... .+++.+|.+++..+.+++.- .    ..-+....   .+..+.   .....+|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~---~Da~~~---~~~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT---ADVMDV---TESLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE---Cchhhc---ccccCCc
Confidence            67889999999888888888765432 37999999999998887643 1    11111111   222221   1112389


Q ss_pred             cEEEEcC-------CChhHHHHHHHHcccCCcEEEEEc
Q 025336          143 DYCFECT-------GVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       143 d~v~d~~-------g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      |+||-.+       .....++.+.+.++++ |.++.=.
T Consensus       197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr~  233 (296)
T PLN03075        197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLRS  233 (296)
T ss_pred             CEEEEecccccccccHHHHHHHHHHhcCCC-cEEEEec
Confidence            9999654       2234678899999998 8876543

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.037  Score=44.46  Aligned_cols=78  Identities=19%  Similarity=0.204  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC--c-eE--eCCCCCCCchHHHHHHHhh-C
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM--T-DF--INPDDEPNKSISELVKGIT-H  138 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~--~-~v--~~~~~~~~~~~~~~i~~~~-~  138 (254)
                      +.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+..    .+.  . .+  .|..+  .+++.. +.+.. .
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~-~~~~~~~   78 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD--QNSIHN-FQLVLKE   78 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC--HHHHHH-HHHHHHh
Confidence            567899987 9999999998888899 89999888766554422    221  1 12  24433  233333 44332 1


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++.+.|.
T Consensus        79 ~~~id~vv~~ag~   91 (280)
T PRK06914         79 IGRIDLLVNNAGY   91 (280)
T ss_pred             cCCeeEEEECCcc
Confidence            2378999998874

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.092  Score=41.45  Aligned_cols=79  Identities=15%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCCcccHHHH-Hh---cCCc-eE--eCCCCCCCchHHHHHHHhh---
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGI-DKNPWKKEKG-EA---FGMT-DF--INPDDEPNKSISELVKGIT---  137 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~~~~~~~~~~-~~---~g~~-~v--~~~~~~~~~~~~~~i~~~~---  137 (254)
                      +.+++|+|+ |.+|..+++.+...|+ +|++. .++.++.+.. ..   .+.. .+  .|..+  .+++...+.+..   
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~i~~~~~~~~~~~   82 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNS--IDGVKKLVEQLKNEL   82 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCC--HHHHHHHHHHHHHHh
Confidence            578999986 9999999998888899 77664 5655444322 22   2221 12  24333  233333333332   


Q ss_pred             ----CCCCccEEEEcCCC
Q 025336          138 ----HGMGVDYCFECTGV  151 (254)
Q Consensus       138 ----~~~~~d~v~d~~g~  151 (254)
                          +..++|++|.+.|.
T Consensus        83 ~~~~~~~~id~vi~~ag~  100 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGI  100 (254)
T ss_pred             ccccCCCCccEEEECCCC
Confidence                11369999998874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.23  E-value=0.039  Score=42.59  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      +..+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35689999999999999999999999889999887

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=96.23  E-value=0.1  Score=39.98  Aligned_cols=100  Identities=18%  Similarity=0.145  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ++.+||-+|+|. |..+..+++.....+|++++.+++..+.+++    .+...+- ...   .+....+........||.
T Consensus        40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~-~~~---~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLR-LLC---GDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEE-EEe---cCHHHHHHHHcCccccce
Confidence            567899889875 7777788876543389999999998888764    2322211 111   223223332222337999


Q ss_pred             EEEcCC--------------ChhHHHHHHHHcccCCcEEEEEcc
Q 025336          145 CFECTG--------------VPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       145 v~d~~g--------------~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ++-...              ....+..+.+.++++ |.++....
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~~  157 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFATD  157 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEcC
Confidence            875322              133678889999999 99887643

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.22  E-value=0.061  Score=41.03  Aligned_cols=34  Identities=21%  Similarity=0.408  Sum_probs=30.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      ..+|+|.|+|++|.-.++.+-..|.++++.+|.+
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4789999999999999999999999888888765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.22  E-value=0.039  Score=44.39  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCcc---cHHHH-HhcCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKNPW---KKEKG-EAFGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~~~---~~~~~-~~~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+   +++|+++++.+...|+ +|+.++++++   +.+.+ ++++....  .|..+  .+.....+.+... 
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK--PEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC--HHHHHHHHHHHHHH
Confidence            4678999986   4899999998888999 8888877742   22222 33443222  34443  2333333333322 


Q ss_pred             CCCccEEEEcCCCh--------------h---------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          139 GMGVDYCFECTGVP--------------S---------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       139 ~~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ...+|+++++.|..              +               ..+.++..+..+ |+++.+++..+
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~~~  147 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYLGG  147 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecCCC
Confidence            13799999998731              0               123455566677 89888776543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.21  E-value=0.17  Score=37.06  Aligned_cols=82  Identities=11%  Similarity=0.150  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|+|.|+|.+|.--++.+...|+ +|++++  ++..+.+++++.-. +..+.     +.+     .+-.++|+|+-+
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~-~~~~~-----~~~-----~dl~~a~lViaa   77 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYIT-WKQKT-----FSN-----DDIKDAHLIYAA   77 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcE-EEecc-----cCh-----hcCCCceEEEEC
Confidence            57899999999999998888888999 888873  44444444554221 22221     111     112378999999


Q ss_pred             CCChhHHHHHHHHcccC
Q 025336          149 TGVPSLLSEALETTKVG  165 (254)
Q Consensus       149 ~g~~~~~~~~~~~l~~~  165 (254)
                      ++.. .++......+..
T Consensus        78 T~d~-e~N~~i~~~a~~   93 (157)
T PRK06719         78 TNQH-AVNMMVKQAAHD   93 (157)
T ss_pred             CCCH-HHHHHHHHHHHH
Confidence            9887 456555555444

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.21  E-value=0.034  Score=44.26  Aligned_cols=93  Identities=19%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCc---eEeCCCCCCCchHHHHHHHhhCCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMT---DFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      .++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++.    |..   .++.      .+..+ +..... .
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~------~d~~~-l~~~~~-~  111 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH------CAAQD-IAQHLE-T  111 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEE------cCHHH-HhhhcC-C
Confidence            4567889888764 7777788775 77 899999999988887653    321   1221      11211 222223 3


Q ss_pred             CccEEEEcC-----CC-hhHHHHHHHHcccCCcEEEEE
Q 025336          141 GVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       141 ~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      .||+|+...     .. ...+..+.+.++|+ |.++.+
T Consensus       112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~  148 (255)
T PRK11036        112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLM  148 (255)
T ss_pred             CCCEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEE
Confidence            799998532     22 23578889999999 998765

>PRK06153 hypothetical protein; Provisional

Probab=96.21  E-value=0.023  Score=47.45  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      ++.+|+|.|+|++|..+++.+-..|.++++.+|.+
T Consensus       175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            46789999999999999999999999899998776

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.20  E-value=0.096  Score=43.88  Aligned_cols=95  Identities=14%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcC--CcccHH-HHHhcCCceEeCCCCCCCchHHHHH-----------
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQ--GAAKIIGIDK--NPWKKE-KGEAFGMTDFINPDDEPNKSISELV-----------  133 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~--g~~~v~~v~~--~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i-----------  133 (254)
                      .+|.|+|+ |++|..+++..+..  .+ +|++...  +.+++. .++++++..+.-.++    .....+           
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~~~~~l~~~l~~~~~~v   76 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADE----EAAKELKEALAAAGIEV   76 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHhhccCCceE
Confidence            46899996 99999999988755  46 7777743  333333 356788776554332    222222           


Q ss_pred             -------HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEE
Q 025336          134 -------KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       134 -------~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  171 (254)
                             .++.....+|+|+.++.+...+.-.+.+++.+ -++.+
T Consensus        77 ~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL  120 (385)
T PRK05447         77 LAGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL  120 (385)
T ss_pred             EEChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence                   22223336999999998766677788888775 44433

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.20  E-value=0.053  Score=42.89  Aligned_cols=80  Identities=19%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+.+++++++.+.+    +..+... .  .|..+  .+.+...+.++. ..
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   84 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH--KQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC--HHHHHHHHHHHHHhc
Confidence            4678999986 9999999998888999 899998887655443    2223221 2  23333  233333333321 11


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++.+.|.
T Consensus        85 ~~id~vi~~ag~   96 (254)
T PRK08085         85 GPIDVLINNAGI   96 (254)
T ss_pred             CCCCEEEECCCc
Confidence            379999999874

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.053  Score=47.41  Aligned_cols=69  Identities=28%  Similarity=0.322  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc-----cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW-----KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~-----~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      .+.+|+|+|+|.+|+.++.+++..|. +|++++..+.     ..+.+++.|.........   .          ....+|
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---~----------~~~~~D   80 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP---T----------LPEDTD   80 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---c----------ccCCCC
Confidence            56789999999999999999999999 8999876542     123455667654443321   1          012678


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +|+-+.|-
T Consensus        81 ~Vv~s~Gi   88 (480)
T PRK01438         81 LVVTSPGW   88 (480)
T ss_pred             EEEECCCc
Confidence            88887775

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.19  E-value=0.039  Score=43.43  Aligned_cols=79  Identities=25%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCc-eEe--CCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMT-DFI--NPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++.++...+.    ..+.. .++  |..+  .+.+.+.+.++.. .
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD--RDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999999999 8999988876554432    22322 122  3322  2333333333321 1


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      .++|++|.+.|
T Consensus        79 ~~~d~vi~~ag   89 (250)
T TIGR03206        79 GPVDVLVNNAG   89 (250)
T ss_pred             CCCCEEEECCC
Confidence            27899999887

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.038  Score=43.66  Aligned_cols=80  Identities=16%  Similarity=0.104  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+.+    .+.. ..  .|..+  ..+....+.+... -
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   83 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE--MEQIDALFAHIRERH   83 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            3568999986 9999999999999999 99999888765544322    2321 12  23333  1223333333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      ..+|+++++.|.
T Consensus        84 ~~id~li~~ag~   95 (252)
T PRK07035         84 GRLDILVNNAAA   95 (252)
T ss_pred             CCCCEEEECCCc
Confidence            268999998873

>PRK08589 short chain dehydrogenase; Validated

Probab=96.19  E-value=0.036  Score=44.43  Aligned_cols=79  Identities=16%  Similarity=0.258  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHH-HH---hcCCc-e--EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEK-GE---AFGMT-D--FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~-~~---~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ +++|...++.+...|+ +|++++++ ++.+. ++   +.+.. .  ..|..+  ..+....+.+... .
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   80 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISD--EQQVKDFASEIKEQF   80 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHHHc
Confidence            4678999987 8999999988888999 89999888 44332 22   22321 1  234333  2333333333321 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        81 g~id~li~~Ag~   92 (272)
T PRK08589         81 GRVDVLFNNAGV   92 (272)
T ss_pred             CCcCEEEECCCC
Confidence            279999998874

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.19  E-value=0.18  Score=39.95  Aligned_cols=100  Identities=15%  Similarity=0.182  Sum_probs=63.5

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC-ceEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM-TDFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ......++.+||-+|+|. |..+..+++ .|. +|+++|.+++..+.+++... ..++..      +... + .. ....
T Consensus        36 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~------d~~~-~-~~-~~~~  103 (251)
T PRK10258         36 AMLPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAG------DIES-L-PL-ATAT  103 (251)
T ss_pred             HhcCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEc------Cccc-C-cC-CCCc
Confidence            334444677899999865 655555554 577 89999999998888877542 122211      1111 0 11 2237


Q ss_pred             ccEEEEcCC------ChhHHHHHHHHcccCCcEEEEEccC
Q 025336          142 VDYCFECTG------VPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       142 ~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ||+|+....      ....+..+.+.++++ |.++.....
T Consensus       104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~~~  142 (251)
T PRK10258        104 FDLAWSNLAVQWCGNLSTALRELYRVVRPG-GVVAFTTLV  142 (251)
T ss_pred             EEEEEECchhhhcCCHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence            999986432      123578888999999 998876544

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.18  E-value=0.051  Score=43.43  Aligned_cols=79  Identities=18%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGLG---TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~g---~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|++   ++|.+.++.+...|+ +|+.++++++..+.+++    .+....  .|-.+  +++....+.+... 
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   81 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE--DASIDAMFAELGKV   81 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC--HHHHHHHHHHHHhh
Confidence            46789999863   799999988888999 88888776321222222    222122  23333  2334444443322 


Q ss_pred             CCCccEEEEcCC
Q 025336          139 GMGVDYCFECTG  150 (254)
Q Consensus       139 ~~~~d~v~d~~g  150 (254)
                      ..++|+++++.|
T Consensus        82 ~g~iD~linnAg   93 (262)
T PRK07984         82 WPKFDGFVHSIG   93 (262)
T ss_pred             cCCCCEEEECCc
Confidence            126999999987

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.18  E-value=0.044  Score=46.53  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=51.6

Q ss_pred             cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHH-------HHHhc-CCceE-eCCCCCCCchHHHHHH
Q 025336           65 AEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKE-------KGEAF-GMTDF-INPDDEPNKSISELVK  134 (254)
Q Consensus        65 ~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~-------~~~~~-g~~~v-~~~~~~~~~~~~~~i~  134 (254)
                      .....+.+|||+|+ |.+|..+++.+...|. +|++++++..+.+       ..+.. +...+ .|..+  .+.+...++
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~  131 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD--ADSLRKVLF  131 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC--HHHHHHHHH
Confidence            34456789999987 9999999999888999 8999988765421       11112 22222 24443  122333333


Q ss_pred             HhhCCCCccEEEEcCCC
Q 025336          135 GITHGMGVDYCFECTGV  151 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~  151 (254)
                      ..  +.++|+||+|.+.
T Consensus       132 ~~--~~~~D~Vi~~aa~  146 (390)
T PLN02657        132 SE--GDPVDVVVSCLAS  146 (390)
T ss_pred             Hh--CCCCcEEEECCcc
Confidence            22  1269999998864

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.18  E-value=0.088  Score=41.48  Aligned_cols=75  Identities=19%  Similarity=0.264  Sum_probs=47.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eE--eCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DF--INPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      ++.++||+|+ |.+|...++.+...|+ +|++++++.     .+..+.. ..  .|..+  .+.+.+.+.+... ..++|
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id   78 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSD--AAAVAQVCQRLLAETGPLD   78 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            4678999987 8999999998888999 899987775     2222221 11  23332  1233333333221 12689


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++.+.|.
T Consensus        79 ~vi~~ag~   86 (252)
T PRK08220         79 VLVNAAGI   86 (252)
T ss_pred             EEEECCCc
Confidence            99998874

>PRK09186 flagellin modification protein A; Provisional

Probab=96.17  E-value=0.049  Score=43.03  Aligned_cols=79  Identities=20%  Similarity=0.275  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-Hh----cCCc---e-EeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EA----FGMT---D-FINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~----~g~~---~-v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.++||+|+ |.+|...+..+...|+ +|+.+.+++++.+.+ ++    .+..   . ..|..+  ++.+.+.+.+...
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~   79 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD--QESLEEFLSKSAE   79 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC--HHHHHHHHHHHHH
Confidence            4678999987 8999999999999999 899998887766543 22    2221   1 224433  2333333443321


Q ss_pred             -CCCccEEEEcCC
Q 025336          139 -GMGVDYCFECTG  150 (254)
Q Consensus       139 -~~~~d~v~d~~g  150 (254)
                       ..++|+++++.+
T Consensus        80 ~~~~id~vi~~A~   92 (256)
T PRK09186         80 KYGKIDGAVNCAY   92 (256)
T ss_pred             HcCCccEEEECCc
Confidence             126999999885

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.12  Score=40.47  Aligned_cols=80  Identities=15%  Similarity=0.092  Sum_probs=47.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc-cHH----HHHhcCCc-eE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW-KKE----KGEAFGMT-DF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~-~~~----~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +++.+.++.+ ..+    .++..+.. ..  .|..+  ..++.+.+.+... 
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   80 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVAD--AAAVTRLFDAAETA   80 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 9999999999999999 7777655432 222    12233422 12  23332  2333333333211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|++|.+.|.
T Consensus        81 ~~~id~vi~~ag~   93 (245)
T PRK12937         81 FGRIDVLVNNAGV   93 (245)
T ss_pred             cCCCCEEEECCCC
Confidence            1278999998874

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.14  E-value=0.045  Score=42.77  Aligned_cols=69  Identities=23%  Similarity=0.313  Sum_probs=48.8

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           73 VAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW--KKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        73 vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      |+|+|+ |.+|...++.+...+. +|.+..++..  ..+.++..|+..+. |+.+   .+   .+.+.-  +++|.||.+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~---~~---~l~~al--~g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVVEADYDD---PE---SLVAAL--KGVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEEES-TT----HH---HHHHHH--TTCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEeecccCC---HH---HHHHHH--cCCceEEee
Confidence            789997 9999999999999888 8888888763  35556778886542 3332   22   222222  289999998


Q ss_pred             CC
Q 025336          149 TG  150 (254)
Q Consensus       149 ~g  150 (254)
                      ++
T Consensus        72 ~~   73 (233)
T PF05368_consen   72 TP   73 (233)
T ss_dssp             SS
T ss_pred             cC
Confidence            88

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.012  Score=42.47  Aligned_cols=117  Identities=14%  Similarity=0.082  Sum_probs=74.6

Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC-------CceEeCCCCCCC
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG-------MTDFINPDDEPN  126 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g-------~~~v~~~~~~~~  126 (254)
                      -.-||..|. ....-.|.+|+-+|+|-+|++-+.+|...-...|..++.+++..+.+++.-       -+.+-.-+-   
T Consensus        15 eala~~~l~-~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw---   90 (201)
T KOG3201|consen   15 EALAWTILR-DPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRW---   90 (201)
T ss_pred             HHHHHHHHh-chhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHH---
Confidence            334565653 333335788998999999999999999777669999999998888776521       111100000   


Q ss_pred             chHHHHHHHhhCCCCccEEE--EcCCC----hhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          127 KSISELVKGITHGMGVDYCF--ECTGV----PSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~--d~~g~----~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .....+..  ..+..||+|+  ||.--    ++.+..+...++|. |+...+...-+
T Consensus        91 ~~~~aqsq--~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~-g~Al~fsPRRg  144 (201)
T KOG3201|consen   91 LIWGAQSQ--QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPS-GRALLFSPRRG  144 (201)
T ss_pred             HHhhhHHH--HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcc-cceeEecCccc
Confidence            00111111  1233899998  77753    33566777889999 99777765444

>PRK09242 tropinone reductase; Provisional

Probab=96.12  E-value=0.052  Score=43.00  Aligned_cols=80  Identities=13%  Similarity=0.140  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----c--CCce-E--eCCCCCCCchHHHHHHHhh-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----F--GMTD-F--INPDDEPNKSISELVKGIT-  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~--g~~~-v--~~~~~~~~~~~~~~i~~~~-  137 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+    .  +... .  .|..+  ..+....+.+.. 
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   84 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD--DEDRRAILDWVED   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4678999987 8999999999999999 89999888766554322    1  2211 1  23332  123333333322 


Q ss_pred             CCCCccEEEEcCCC
Q 025336          138 HGMGVDYCFECTGV  151 (254)
Q Consensus       138 ~~~~~d~v~d~~g~  151 (254)
                      .-.++|+++.+.|.
T Consensus        85 ~~g~id~li~~ag~   98 (257)
T PRK09242         85 HWDGLHILVNNAGG   98 (257)
T ss_pred             HcCCCCEEEECCCC
Confidence            12379999999974

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=96.12  E-value=0.11  Score=41.93  Aligned_cols=108  Identities=13%  Similarity=0.065  Sum_probs=73.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC---C--ceEeCCCCC-CCchHHHHHHHhhCCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG---M--TDFINPDDE-PNKSISELVKGITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g---~--~~v~~~~~~-~~~~~~~~i~~~~~~~~  141 (254)
                      ++..|+|+|. ++.|..++.-+-..|. +|++..-+++..+.++..-   .  +..+|-.+. +.....+.+++..+..+
T Consensus        28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf-~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~g  106 (322)
T KOG1610|consen   28 SDKAVLITGCDSGFGRLLAKKLDKKGF-RVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDG  106 (322)
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHhcCC-EEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccccc
Confidence            5667999997 9999999999999999 9999988887777665422   1  112333320 12233445555556667


Q ss_pred             ccEEEEcCCCh--------------------------hHHHHHHHHcccCCcEEEEEccCCC
Q 025336          142 VDYCFECTGVP--------------------------SLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       142 ~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .-.++|+.|..                          ......+.++++.+||+|.+++..+
T Consensus       107 LwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G  168 (322)
T KOG1610|consen  107 LWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG  168 (322)
T ss_pred             ceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence            88899998831                          1234555667765699999988766

>PLN00016 RNA-binding protein; Provisional

Probab=96.12  E-value=0.085  Score=44.58  Aligned_cols=97  Identities=13%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             CCEEEEE----cC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHH-----------HHhcCCceEeCCCCCCCchHHHHH
Q 025336           70 GSSVAVL----GL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEK-----------GEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        70 ~~~vlI~----G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~-----------~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      ..+|||+    |+ |-+|..+++.+...|. +|+++++++.....           +...+...+.       .|..+ +
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-------~D~~d-~  122 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-------GDPAD-V  122 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-------ecHHH-H
Confidence            4679999    97 9999999998888899 99999888654321           1122333332       22222 2


Q ss_pred             HHhhCCCCccEEEEcCCCh-hHHHHHHHHcccC-CcEEEEEccC
Q 025336          134 KGITHGMGVDYCFECTGVP-SLLSEALETTKVG-KGKVIVIGVG  175 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~-~G~~v~~g~~  175 (254)
                      .+.....++|+|+++.+.. .....+++.+... -.++|.+++.
T Consensus       123 ~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~  166 (378)
T PLN00016        123 KSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSA  166 (378)
T ss_pred             HhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccH
Confidence            2222334899999988743 1244555655533 1267766643

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.12  E-value=0.055  Score=45.75  Aligned_cols=96  Identities=20%  Similarity=0.238  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHH-HHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK-GEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      ++.++||+|+|-+|..++..+...|..++++.-++.++... ++++|+. ++..+     ++...+      ..+|+||-
T Consensus       177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~-----el~~~l------~~~DvVis  244 (414)
T COG0373         177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALE-----ELLEAL------AEADVVIS  244 (414)
T ss_pred             ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHH-----HHHHhh------hhCCEEEE
Confidence            67889999999999999999999998799999888887764 5678844 33332     222222      27899999


Q ss_pred             cCCChhH---HHHHHHHcccCCc-EEEEEccCC
Q 025336          148 CTGVPSL---LSEALETTKVGKG-KVIVIGVGV  176 (254)
Q Consensus       148 ~~g~~~~---~~~~~~~l~~~~G-~~v~~g~~~  176 (254)
                      +++.+..   -....+.+...+. -+++++.+-
T Consensus       245 sTsa~~~ii~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         245 STSAPHPIITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             ecCCCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence            9887532   1233344444313 456666654

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.12  E-value=0.072  Score=44.08  Aligned_cols=95  Identities=19%  Similarity=0.109  Sum_probs=63.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE------eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF------INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v------~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      -+|.|+|+|.+|.+.+..+...|. +|.+.++++++.+.++..+....      +..+-....+..+.+      ...|+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~------~~aD~   77 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL------AGADF   77 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH------cCCCE
Confidence            368999999999999999888898 89999998887776665321100      000000001222211      27899


Q ss_pred             EEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          145 CFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       145 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      |+-|+... .++..++.++++ -.++.+..
T Consensus        78 Vi~~v~~~-~~~~v~~~l~~~-~~vi~~~~  105 (328)
T PRK14618         78 AVVAVPSK-ALRETLAGLPRA-LGYVSCAK  105 (328)
T ss_pred             EEEECchH-HHHHHHHhcCcC-CEEEEEee
Confidence            99999987 468888888876 66666654

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.12  E-value=0.054  Score=43.91  Aligned_cols=92  Identities=17%  Similarity=0.246  Sum_probs=55.1

Q ss_pred             CEEEEEcCCHHHHH-HHHHHHHcCCCeEEEE-cCCcc--cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           71 SSVAVLGLGTVGLG-AVDGARMQGAAKIIGI-DKNPW--KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        71 ~~vlI~G~g~~G~~-~~~~a~~~g~~~v~~v-~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      -+|.|+|.|.+|.. +..+.+..+. ++.++ +.+++  .+++++++|....+       .++...+.. ..-..+|+||
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~-------~~ie~LL~~-~~~~dIDiVf   75 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA-------EGIDGLLAM-PEFDDIDIVF   75 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc-------CCHHHHHhC-cCCCCCCEEE
Confidence            46899999999986 4455555566 55544 44443  34567778754322       222222221 1113799999


Q ss_pred             EcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          147 ECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ++++.....+.+..+...+ -.+++.
T Consensus        76 ~AT~a~~H~e~a~~a~eaG-k~VID~  100 (302)
T PRK08300         76 DATSAGAHVRHAAKLREAG-IRAIDL  100 (302)
T ss_pred             ECCCHHHHHHHHHHHHHcC-CeEEEC
Confidence            9999876666666666554 444443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.11  E-value=0.031  Score=43.64  Aligned_cols=102  Identities=24%  Similarity=0.316  Sum_probs=65.1

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhc----CCce--EeCCCCCCCchHHHHHHH
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAF----GMTD--FINPDDEPNKSISELVKG  135 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~----g~~~--v~~~~~~~~~~~~~~i~~  135 (254)
                      ....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++.    +.+.  ++..+      ... + .
T Consensus        39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~-~-~  109 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN------AME-L-P  109 (231)
T ss_pred             HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec------hhc-C-C
Confidence            556778899999998764 6677788887642 2899999998887777542    2221  12111      111 0 1


Q ss_pred             hhCCCCccEEEEcCC-----C-hhHHHHHHHHcccCCcEEEEEccC
Q 025336          136 ITHGMGVDYCFECTG-----V-PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      . ....||+|+-+..     . ...+..+.+.|+++ |+++.....
T Consensus       110 ~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~~  153 (231)
T TIGR02752       110 F-DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG-GKVVCLETS  153 (231)
T ss_pred             C-CCCCccEEEEecccccCCCHHHHHHHHHHHcCcC-eEEEEEECC
Confidence            1 2237999974321     1 23467788899999 999876543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.065  Score=43.38  Aligned_cols=80  Identities=21%  Similarity=0.197  Sum_probs=49.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc---------ccHHHH----HhcCCce-E--eCCCCCCCchHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP---------WKKEKG----EAFGMTD-F--INPDDEPNKSISE  131 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~---------~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~  131 (254)
                      ++.++||+|+ +++|...++.+...|+ +|++++++.         ++.+.+    +..+... .  .|..+  .++...
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~v~~   81 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD--WDGAAN   81 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC--HHHHHH
Confidence            5788999986 8999999988888999 888876654         333222    2233322 2  23332  233333


Q ss_pred             HHHHhhC-CCCccEEEEcCCC
Q 025336          132 LVKGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       132 ~i~~~~~-~~~~d~v~d~~g~  151 (254)
                      .+.+... ..++|+++++.|.
T Consensus        82 ~~~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         82 LVDAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence            3333321 1379999998874

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.10  E-value=0.029  Score=44.16  Aligned_cols=80  Identities=19%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-Ee--CCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-FI--NPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |.+|...+..+...|+ +|++++++.++...+    +..+... ++  |..+  ..++...+.+... .
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRD--RAALKAAVAAGVEDF   81 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4578999986 9999999988888899 899998886544332    2333221 22  3332  2333333333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      ..+|.++.+.+.
T Consensus        82 ~~~d~vi~~ag~   93 (251)
T PRK12826         82 GRLDILVANAGI   93 (251)
T ss_pred             CCCCEEEECCCC
Confidence            278999998864

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.09  E-value=0.072  Score=47.53  Aligned_cols=74  Identities=11%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeC-CCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN-PDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      ++++|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...+.- ..+   ++   .+++ .+-..+|.++-++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~~---~~---~L~~-a~i~~a~~viv~~  489 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAAN---EE---IMQL-AHLDCARWLLLTI  489 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCCC---HH---HHHh-cCccccCEEEEEc
Confidence            679999999999999999999999 8999999999999999888665442 222   22   2332 2334788888777


Q ss_pred             CCh
Q 025336          150 GVP  152 (254)
Q Consensus       150 g~~  152 (254)
                      ++.
T Consensus       490 ~~~  492 (558)
T PRK10669        490 PNG  492 (558)
T ss_pred             CCh
Confidence            654

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.09  E-value=0.049  Score=43.74  Aligned_cols=79  Identities=18%  Similarity=0.253  Sum_probs=48.8

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCc---ccHHHH-HhcCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKNP---WKKEKG-EAFGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~~---~~~~~~-~~~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+   +++|.+.++.+...|+ +|+.+.+++   ++.+.+ ++++....  .|-.+  .++....+.++.. 
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   85 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD--EASIDAVFETLEKK   85 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC--HHHHHHHHHHHHHh
Confidence            5678999986   5899999999889999 888876653   223322 33453222  23332  2333333333322 


Q ss_pred             CCCccEEEEcCC
Q 025336          139 GMGVDYCFECTG  150 (254)
Q Consensus       139 ~~~~d~v~d~~g  150 (254)
                      ..++|+++++.|
T Consensus        86 ~g~iD~lv~nAG   97 (272)
T PRK08159         86 WGKLDFVVHAIG   97 (272)
T ss_pred             cCCCcEEEECCc
Confidence            237999999886

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.057  Score=42.48  Aligned_cols=78  Identities=15%  Similarity=0.234  Sum_probs=50.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----c--CCc-eE--eCCCCCCCchHHHHHHHhhC-
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----F--GMT-DF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~--g~~-~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +.++||+|+ |++|...++.+...|+ +|+++++++++.+.+..    .  +.. .+  .|..+  .+++...+.++.. 
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   78 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND--HDQVFEVFAEFRDE   78 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            467999986 9999998888888898 89999888776654422    1  211 12  24443  2333333333321 


Q ss_pred             CCCccEEEEcCC
Q 025336          139 GMGVDYCFECTG  150 (254)
Q Consensus       139 ~~~~d~v~d~~g  150 (254)
                      -.++|+++.+.|
T Consensus        79 ~~~id~vi~~ag   90 (248)
T PRK08251         79 LGGLDRVIVNAG   90 (248)
T ss_pred             cCCCCEEEECCC
Confidence            237999999886

>PLN00203 glutamyl-tRNA reductase

Probab=96.09  E-value=0.033  Score=48.83  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=51.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcC-Cce-EeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFG-MTD-FINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g-~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +.+|+|+|+|.+|.++++.+...|+.+|+++.++.++.+.+. .++ ... +...     .+..+.+      ...|+||
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~-----~dl~~al------~~aDVVI  334 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPL-----DEMLACA------AEADVVF  334 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH-----hhHHHHH------hcCCEEE
Confidence            678999999999999999999999878999999988876654 353 221 1111     1122221      2789999


Q ss_pred             EcCCCh
Q 025336          147 ECTGVP  152 (254)
Q Consensus       147 d~~g~~  152 (254)
                      .|++.+
T Consensus       335 sAT~s~  340 (519)
T PLN00203        335 TSTSSE  340 (519)
T ss_pred             EccCCC
Confidence            998754

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=96.08  E-value=0.26  Score=39.87  Aligned_cols=59  Identities=17%  Similarity=0.264  Sum_probs=45.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---CcccHHHHHhcCCceEeCCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK---NPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~---~~~~~~~~~~~g~~~v~~~~  122 (254)
                      ..+.+++|.+|+=-=+|++|...+.+++.+|+ +++.+-.   +.++...++.+|+..+....
T Consensus        55 ~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy-~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          55 KRGLLKPGGTIVEATSGNTGIALAMVAAAKGY-RLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            56679999954433359999999999999999 5655533   56888899999998776554

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.08  E-value=0.035  Score=45.44  Aligned_cols=98  Identities=10%  Similarity=0.094  Sum_probs=58.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc-CCceEeCCCCCCCchHHHHHHHh--hCCCCccEEEE
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF-GMTDFINPDDEPNKSISELVKGI--THGMGVDYCFE  147 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~i~~~--~~~~~~d~v~d  147 (254)
                      -+|+|+|+|++|.+..-.+...|. .|..+.+.+++.+..++. |.. +.....    .....+...  .....+|++|-
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~----~~~~~~~~~~~~~~~~~D~viv   76 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLT-LVEQGQ----ASLYAIPAETADAAEPIHRLLL   76 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeE-EeeCCc----ceeeccCCCCcccccccCEEEE
Confidence            369999999999987777777898 899998887777766543 321 111111    000000000  01137899999


Q ss_pred             cCCChh---HHHHHHHHcccCCcEEEEEccC
Q 025336          148 CTGVPS---LLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       148 ~~g~~~---~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      |+=..+   .++.+...+.++ ..++.+-+.
T Consensus        77 ~vK~~~~~~al~~l~~~l~~~-t~vv~lQNG  106 (305)
T PRK05708         77 ACKAYDAEPAVASLAHRLAPG-AELLLLQNG  106 (305)
T ss_pred             ECCHHhHHHHHHHHHhhCCCC-CEEEEEeCC
Confidence            886542   334444556666 666666543

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.07  E-value=0.059  Score=42.72  Aligned_cols=79  Identities=18%  Similarity=0.275  Sum_probs=51.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCc-eE--eCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMT-DF--INPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      +.++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+.+ ++.. ..  .|-.+  ..+....+.++.. ..++|
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR--QDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence            578999987 9999999999998999 89999888876665433 3321 11  23322  2333333333221 12799


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++.+.|.
T Consensus        83 ~li~~ag~   90 (257)
T PRK07067         83 ILFNNAAL   90 (257)
T ss_pred             EEEECCCc
Confidence            99998863

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.045  Score=43.24  Aligned_cols=76  Identities=20%  Similarity=0.200  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC--ce-EeCCCCCCCchHHHHHHHhh-CCCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM--TD-FINPDDEPNKSISELVKGIT-HGMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~--~~-v~~~~~~~~~~~~~~i~~~~-~~~~~d  143 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+.+++++++    +..+.  .. ..|..+  .+++...+.+.. ...++|
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~----~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id   77 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE----TVDGRPAEFHAADVRD--PDQVAALVDAIVERHGRLD   77 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh----hhcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence            4688999986 8999999999888999 89999887654    11221  11 223333  123333333321 112789


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      ++|.+.|.
T Consensus        78 ~vi~~ag~   85 (252)
T PRK07856         78 VLVNNAGG   85 (252)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.05  E-value=0.057  Score=42.75  Aligned_cols=80  Identities=18%  Similarity=0.205  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCc-eE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMT-DF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.+++|.|+ |.+|..+++.+...|+ +|+.+++++++.+.+    ++.+.. ..  .|..+  ..++...+.+... .
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD--EEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            5788999987 9999999988888899 899998887654432    223421 12  24333  2333333333322 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|.++.+.|.
T Consensus        87 ~~id~vi~~ag~   98 (256)
T PRK06124         87 GRLDILVNNVGA   98 (256)
T ss_pred             CCCCEEEECCCC
Confidence            278999998874

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=96.05  E-value=0.006  Score=41.66  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=28.2

Q ss_pred             CCCCCcccccCCceeeee---------------------------eccCcceeeEEecCCceEEc
Q 025336            1 MLDGTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVRV   38 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~v~~~   38 (254)
                      +|+++.+|++ ||+|...                           ..+|+|+||+++|++.++|+
T Consensus        46 vG~~v~~~~~-Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   46 VGPGVTDFKV-GDRVVVSPNIGCGECEYCLSGRPNLCPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             ESTTTTSSGT-T-EEEEESEEETSSSHHHHTTTGGGTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             eccccccccc-cceeeeecccCccCchhhcCCccccCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence            3778888999 9998631                           11389999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.04  E-value=0.077  Score=41.50  Aligned_cols=79  Identities=13%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-Ee--CCCCCCCchHHHHHHHhhC-CC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-FI--NPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      +.+++|.|+ |.+|..++..+...|+ +|+.+++++++.+..    +..+... ++  |..+  ..++...+++... ..
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   83 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSD--YEEVTAAIEQLKNELG   83 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            578999986 8999999998889999 899998887655433    2223221 12  3322  2333333333221 23


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|++|.+.|.
T Consensus        84 ~id~vi~~ag~   94 (239)
T PRK07666         84 SIDILINNAGI   94 (239)
T ss_pred             CccEEEEcCcc
Confidence            78999998874

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.04  E-value=0.11  Score=42.26  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=36.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM  115 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~  115 (254)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~   46 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGA   46 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            68899999999988888888898 89999999888877766664

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.03  E-value=0.048  Score=43.16  Aligned_cols=80  Identities=21%  Similarity=0.221  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHHHHhcCCce-E--eCCCCCCCchHHHHHHHhhC-CCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW--KKEKGEAFGMTD-F--INPDDEPNKSISELVKGITH-GMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~  141 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+++.+.  ..+.+++.+... .  .|-.+  .++....+.+... ..+
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRK--IDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhCC
Confidence            3678999986 8999999999999999 8888765432  122333344221 1  23322  2333333333221 137


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        86 ~D~li~~Ag~   95 (253)
T PRK08993         86 IDILVNNAGL   95 (253)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.03  E-value=0.043  Score=43.28  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=50.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCce-E--eCCCCCCCchHHHHHHHhhC-CCCccEE
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTD-F--INPDDEPNKSISELVKGITH-GMGVDYC  145 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~d~v  145 (254)
                      +++|+|+ |.+|...++.+...|+ +|+++++++++.+.+.. ++... .  .|-.+  .+++.+.+.++.. ..++|.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~id~v   78 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWRNIDVL   78 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            5899986 9999999999999999 89999998877665533 34321 1  23333  1233333333221 1379999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +.+.|.
T Consensus        79 i~~ag~   84 (248)
T PRK10538         79 VNNAGL   84 (248)
T ss_pred             EECCCc
Confidence            998864

>PLN02253 xanthoxin dehydrogenase

Probab=96.03  E-value=0.044  Score=44.05  Aligned_cols=80  Identities=18%  Similarity=0.106  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCC--c-e--EeCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGM--T-D--FINPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~--~-~--v~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      .+.++||+|+ |++|...++.+...|+ +|++++++++..+.+ .+++.  . .  ..|..+  .+...+.+.+... ..
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV--EDDVSRAVDFTVDKFG   93 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            3678999986 9999999988888899 899998876554433 22321  1 1  124333  1233333332211 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus        94 ~id~li~~Ag~  104 (280)
T PLN02253         94 TLDIMVNNAGL  104 (280)
T ss_pred             CCCEEEECCCc
Confidence            79999998874

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.02  E-value=0.027  Score=44.51  Aligned_cols=96  Identities=15%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC----------ceEeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM----------TDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~----------~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      +.++|||+|+|. |..+-+++++....+|.+++.+++-.+.++++-.          -.++.      .|....+++...
T Consensus        76 ~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~------~Dg~~~l~~~~~  148 (246)
T PF01564_consen   76 NPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIII------GDGRKFLKETQE  148 (246)
T ss_dssp             ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEE------STHHHHHHTSSS
T ss_pred             CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEE------hhhHHHHHhccC
Confidence            568999998654 5666777787766699999999998888877421          12221      456666666443


Q ss_pred             CCCccEEE-EcCCC---------hhHHHHHHHHcccCCcEEEEEc
Q 025336          139 GMGVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       139 ~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      . .||+++ |....         ...++.+.+.|+++ |.++.-.
T Consensus       149 ~-~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~-Gv~v~~~  191 (246)
T PF01564_consen  149 E-KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD-GVLVLQA  191 (246)
T ss_dssp             T--EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             C-cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC-cEEEEEc
Confidence            3 899998 55541         23577888999999 9888654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=96.02  E-value=0.083  Score=39.68  Aligned_cols=73  Identities=22%  Similarity=0.222  Sum_probs=56.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      -+++|++||=+|.|. |.+...+-...++ ..++++.++++...+.+.|.. |+.      .|+.+.+....++ .||+|
T Consensus        10 ~I~pgsrVLDLGCGd-G~LL~~L~~~k~v-~g~GvEid~~~v~~cv~rGv~-Viq------~Dld~gL~~f~d~-sFD~V   79 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGD-GELLAYLKDEKQV-DGYGVEIDPDNVAACVARGVS-VIQ------GDLDEGLADFPDQ-SFDYV   79 (193)
T ss_pred             HcCCCCEEEecCCCc-hHHHHHHHHhcCC-eEEEEecCHHHHHHHHHcCCC-EEE------CCHHHhHhhCCCC-CccEE
Confidence            367899999999874 6677677777889 999999999999988888876 443      4455566666554 89999


Q ss_pred             EEc
Q 025336          146 FEC  148 (254)
Q Consensus       146 ~d~  148 (254)
                      |-+
T Consensus        80 Ils   82 (193)
T PF07021_consen   80 ILS   82 (193)
T ss_pred             ehH
Confidence            843

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.02  E-value=0.13  Score=41.48  Aligned_cols=44  Identities=27%  Similarity=0.355  Sum_probs=39.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccc-HHHHHhcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWK-KEKGEAFGMT  116 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~-~~~~~~~g~~  116 (254)
                      +|..+|.|.+|.-+++=+...|. .|.+.++++++ .+.++..|+.
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~Ga~   46 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAAGAT   46 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHcCCc
Confidence            57888999999999999999999 99999999999 8888887765

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.02  E-value=0.031  Score=44.34  Aligned_cols=79  Identities=19%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH---hcCCce---EeCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE---AFGMTD---FINPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+++++...+..+   ..+.+.   ..|..+  .++....+.+... ..
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET--YAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC--HHHHHHHHHHHHHHcC
Confidence            3678999986 9999999999888999 8999888753322222   234321   224333  1233333333221 12


Q ss_pred             CccEEEEcCC
Q 025336          141 GVDYCFECTG  150 (254)
Q Consensus       141 ~~d~v~d~~g  150 (254)
                      ++|+++++.|
T Consensus        84 ~id~lv~nAg   93 (260)
T PRK12823         84 RIDVLINNVG   93 (260)
T ss_pred             CCeEEEECCc
Confidence            7999999887

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=96.01  E-value=0.06  Score=43.34  Aligned_cols=79  Identities=20%  Similarity=0.222  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcC-CHHHHH-HHHHHHHcCCCeEEEEcCCcccHHHHHh-----cCC---ceEeCCCCCCCch-HHHHHHHh
Q 025336           68 EKGSSVAVLGL-GTVGLG-AVDGARMQGAAKIIGIDKNPWKKEKGEA-----FGM---TDFINPDDEPNKS-ISELVKGI  136 (254)
Q Consensus        68 ~~~~~vlI~G~-g~~G~~-~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----~g~---~~v~~~~~~~~~~-~~~~i~~~  136 (254)
                      +.|++.+|.|+ .++|.. +-++|| .|. +|+.+.|+++|++..++     .++   ..++|..+   ++ ..+.+++.
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~---~~~~ye~i~~~  121 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTK---GDEVYEKLLEK  121 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCC---CchhHHHHHHH
Confidence            35688899998 799977 456666 999 89999999999987643     442   23566665   33 35556665


Q ss_pred             hCCCCccEEEEcCCC
Q 025336          137 THGMGVDYCFECTGV  151 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~  151 (254)
                      ..+-.+-+.++++|-
T Consensus       122 l~~~~VgILVNNvG~  136 (312)
T KOG1014|consen  122 LAGLDVGILVNNVGM  136 (312)
T ss_pred             hcCCceEEEEecccc
Confidence            555578888999985

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.01  E-value=0.082  Score=37.66  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=28.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccH
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKK  107 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~  107 (254)
                      ++|.|+|.++++.+++++.+|+ +|++++..+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~-~v~v~d~r~e~~   34 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGF-RVTVVDPRPERF   34 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTE-EEEEEES-CCC-
T ss_pred             CEEEeCcHHHHHHHHHHHhCCC-EEEEEcCCcccc
Confidence            4677999999999999999999 999998887755

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.01  E-value=0.12  Score=41.87  Aligned_cols=94  Identities=17%  Similarity=0.228  Sum_probs=65.1

Q ss_pred             cccchhhhhhHHHHHhcCC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC
Q 025336           49 FLSCGFTTGFGAAWKEAEV-EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~-~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                      .+||+....+..| +.-++ -.|.+|.|+|. +.+|.-++.++...|+ .|++..+..                      
T Consensus       138 ~~PcTp~aii~lL-~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t----------------------  193 (301)
T PRK14194        138 LTPCTPSGCLRLL-EDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRS----------------------  193 (301)
T ss_pred             CCCCcHHHHHHHH-HHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCC----------------------
Confidence            4566655555555 33343 47999999997 6999999999999999 888763321                      


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      .+..+.+      +..|+++-++|.+..+...+  ++++ ..++.+|..
T Consensus       194 ~~l~e~~------~~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin  233 (301)
T PRK14194        194 TDAKALC------RQADIVVAAVGRPRLIDADW--LKPG-AVVIDVGIN  233 (301)
T ss_pred             CCHHHHH------hcCCEEEEecCChhcccHhh--ccCC-cEEEEeccc
Confidence            1122222      16799999999876655554  8887 888888854

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.053  Score=44.41  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=29.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      .+.+++|+|+ +++|.++++.+...|+ +|+.++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            4678999987 8999999999999999 89888876

>PLN02256 arogenate dehydrogenase

Probab=96.00  E-value=0.18  Score=41.18  Aligned_cols=91  Identities=12%  Similarity=0.222  Sum_probs=58.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      -.+..+|.|+|.|.+|...+..++..|. +|+++++++. .+.++.+|... .  .     +..+.+    . ...|+|+
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~~-~--~-----~~~e~~----~-~~aDvVi   97 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVSF-F--R-----DPDDFC----E-EHPDVVL   97 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCee-e--C-----CHHHHh----h-CCCCEEE
Confidence            3356789999999999999998888888 8999888763 45566666531 1  1     122211    1 1578888


Q ss_pred             EcCCChhHHHHHHHH-----cccCCcEEEEEcc
Q 025336          147 ECTGVPSLLSEALET-----TKVGKGKVIVIGV  174 (254)
Q Consensus       147 d~~g~~~~~~~~~~~-----l~~~~G~~v~~g~  174 (254)
                      -|+... .+...+..     +.++ ..++.+++
T Consensus        98 lavp~~-~~~~vl~~l~~~~l~~~-~iviDv~S  128 (304)
T PLN02256         98 LCTSIL-STEAVLRSLPLQRLKRS-TLFVDVLS  128 (304)
T ss_pred             EecCHH-HHHHHHHhhhhhccCCC-CEEEecCC
Confidence            888765 33333332     3455 56666665

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.056  Score=42.79  Aligned_cols=79  Identities=16%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcC---Cce-EeCCCCCCCchHHHHHHHhh-CCCCc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFG---MTD-FINPDDEPNKSISELVKGIT-HGMGV  142 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g---~~~-v~~~~~~~~~~~~~~i~~~~-~~~~~  142 (254)
                      +.++||+|+ |.+|...+..+...|+ +|++++++.++.+.+. .+.   ... ..|..+  .+.+...+.+.. ...++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD--AASLAAALANAAAERGPV   78 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            467999987 8999999988888899 8999988877665432 221   111 123333  122223333321 11269


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |.++.+.|.
T Consensus        79 d~vi~~ag~   87 (257)
T PRK07074         79 DVLVANAGA   87 (257)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.99  E-value=0.17  Score=41.70  Aligned_cols=39  Identities=26%  Similarity=0.392  Sum_probs=33.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG  110 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~  110 (254)
                      .+|.|+|+|.+|...++.+...|. +|+..+.+++..+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~   46 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL   46 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence            579999999999999988889999 999999998766543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.97  E-value=0.05  Score=49.07  Aligned_cols=93  Identities=17%  Similarity=0.206  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .++|+|.|.|.+|+..++.++..|. ++++++.++++.+.+++.|...++ |..+   .+.   +++ .+-..+|.++-+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~---~~~---L~~-agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFYGDATR---MDL---LES-AGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEEEeCCC---HHH---HHh-cCCCcCCEEEEE
Confidence            3579999999999999999999999 899999999999999998865443 2222   332   322 343488999999


Q ss_pred             CCChhHHH---HHHHHcccCCcEEEE
Q 025336          149 TGVPSLLS---EALETTKVGKGKVIV  171 (254)
Q Consensus       149 ~g~~~~~~---~~~~~l~~~~G~~v~  171 (254)
                      +++...-.   ...+...|+ -+++.
T Consensus       472 ~~d~~~n~~i~~~ar~~~p~-~~iia  496 (621)
T PRK03562        472 IDDPQTSLQLVELVKEHFPH-LQIIA  496 (621)
T ss_pred             eCCHHHHHHHHHHHHHhCCC-CeEEE
Confidence            88753322   233344455 45443

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=95.97  E-value=0.075  Score=44.47  Aligned_cols=104  Identities=21%  Similarity=0.362  Sum_probs=66.0

Q ss_pred             HhcCCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce--EeCCCCCCCchHHHHHH
Q 025336           63 KEAEVEKGSSVAVL-GL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD--FINPDDEPNKSISELVK  134 (254)
Q Consensus        63 ~~~~~~~~~~vlI~-G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~--v~~~~~~~~~~~~~~i~  134 (254)
                      ....+++|++||=. ++ |+=-...+|+....|. .|++++.++.|+..++    ++|...  ++...+   .....   
T Consensus       150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~-iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~---~~~~~---  222 (355)
T COG0144         150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGA-IVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA---RRLAE---  222 (355)
T ss_pred             HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc---ccccc---
Confidence            46778899999877 33 5433444455555566 7899999999988775    478764  333221   11111   


Q ss_pred             HhhCCCCccEEE-E--cCCC-------------------------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          135 GITHGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       135 ~~~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ....+..||.|+ |  |+|.                         ...+..+++.++++ |+++....
T Consensus       223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G-G~LVYSTC  289 (355)
T COG0144         223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG-GVLVYSTC  289 (355)
T ss_pred             cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEcc
Confidence            111222599887 5  6664                         12578889999999 98876544

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.95  E-value=0.16  Score=40.02  Aligned_cols=104  Identities=14%  Similarity=0.088  Sum_probs=59.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-cccH----HHHHhcCCc-eE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN-PWKK----EKGEAFGMT-DF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~-~~~~----~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      +.++||+|+ |.+|...++-+...|+ +|+...++ .++.    ..+++.+.. ..  .|..+  ..+....+.++.. -
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST--REGCETLAKATIDRY   82 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC--HHHHHHHHHHHHHHc
Confidence            578999986 8999999988888999 77665443 2222    122333332 12  23333  1222222322211 1


Q ss_pred             CCccEEEEcCCC----------hh---------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          140 MGVDYCFECTGV----------PS---------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       140 ~~~d~v~d~~g~----------~~---------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .++|.+|.+.|.          .+               ..+.+.+.+... |+++.+++...
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~  144 (252)
T PRK06077         83 GVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVAG  144 (252)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchhc
Confidence            278999999873          00               123344455666 89998887543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.95  E-value=0.11  Score=36.36  Aligned_cols=92  Identities=22%  Similarity=0.317  Sum_probs=50.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHH-cCCCeEEEE-cCCcc---cHHHHHhcCCc--eEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           72 SVAVLGL-GTVGLGAVDGARM-QGAAKIIGI-DKNPW---KKEKGEAFGMT--DFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~-~g~~~v~~v-~~~~~---~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      +|.|+|+ |-+|+..++.+.. .+. ++.++ +++++   ..+...-.|..  .+..+     .    .+.+...  .+|
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~-~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-----~----~l~~~~~--~~D   69 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGF-ELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-----D----DLEELLE--EAD   69 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTE-EEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-----S-----HHHHTT--H-S
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCc-EEEEEEecCCcccccchhhhhhCcCCcccccc-----h----hHHHhcc--cCC
Confidence            5889998 9999999999997 677 55544 34431   11111111211  11111     1    2233322  489


Q ss_pred             EEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          144 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       144 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +++|++..+ .....++.+... |.-+++|..+-
T Consensus        70 VvIDfT~p~-~~~~~~~~~~~~-g~~~ViGTTG~  101 (124)
T PF01113_consen   70 VVIDFTNPD-AVYDNLEYALKH-GVPLVIGTTGF  101 (124)
T ss_dssp             EEEEES-HH-HHHHHHHHHHHH-T-EEEEE-SSS
T ss_pred             EEEEcCChH-HhHHHHHHHHhC-CCCEEEECCCC
Confidence            999999544 566666666665 77777777654

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.94  E-value=0.055  Score=44.11  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=57.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCC-CchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEP-NKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|+|+|+|.+|.+....+...|. +|..+++++++.+.+++.|...  +..+.. .........+.   ..+|++|-|+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~---~~~d~vila~k   75 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--EDGEITVPVLAADDPAEL---GPQDLVILAVK   75 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--cCCceeecccCCCChhHc---CCCCEEEEecc
Confidence            58999999999998888888898 8999988877777776655421  100000 00000011111   38999999987


Q ss_pred             ChhHHHHHHHH----cccCCcEEEEEcc
Q 025336          151 VPSLLSEALET----TKVGKGKVIVIGV  174 (254)
Q Consensus       151 ~~~~~~~~~~~----l~~~~G~~v~~g~  174 (254)
                      .. .++.++..    +.++ ..++.+..
T Consensus        76 ~~-~~~~~~~~l~~~l~~~-~~iv~~~n  101 (304)
T PRK06522         76 AY-QLPAALPSLAPLLGPD-TPVLFLQN  101 (304)
T ss_pred             cc-cHHHHHHHHhhhcCCC-CEEEEecC
Confidence            65 23444443    4344 45555543

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=95.94  E-value=0.051  Score=45.33  Aligned_cols=76  Identities=20%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcC--C--ce-EeCCCCCCCchHHHHHHHhhCCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFG--M--TD-FINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g--~--~~-v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++.+|||+|+ |.+|..+++.+...|. +|+++++++...... +.++  .  .. ..|..+   .+   .+.++....+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~---~~~~~~~~~~   75 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD---AA---KLRKAIAEFK   75 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCC---HH---HHHHHHhhcC
Confidence            3678999986 9999999999999999 899988776543322 1121  1  11 123332   22   2222222236


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|++|++.+.
T Consensus        76 ~d~vih~A~~   85 (349)
T TIGR02622        76 PEIVFHLAAQ   85 (349)
T ss_pred             CCEEEECCcc
Confidence            8999998873

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.94  E-value=0.045  Score=43.93  Aligned_cols=80  Identities=21%  Similarity=0.226  Sum_probs=49.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc-------HH----HHHhcCCce-E--eCCCCCCCchHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK-------KE----KGEAFGMTD-F--INPDDEPNKSISELV  133 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~-------~~----~~~~~g~~~-v--~~~~~~~~~~~~~~i  133 (254)
                      ++.++||+|+ |++|...++.+...|+ +|++++++.+.       .+    .++..+... +  .|..+  .+...+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~   81 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD--EDQVAAAV   81 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHH
Confidence            4578999987 9999999998888999 89998886542       11    122333321 1  34433  23333333


Q ss_pred             HHhh-CCCCccEEEEcCCC
Q 025336          134 KGIT-HGMGVDYCFECTGV  151 (254)
Q Consensus       134 ~~~~-~~~~~d~v~d~~g~  151 (254)
                      .+.. .-.++|++|++.|.
T Consensus        82 ~~~~~~~g~id~li~~ag~  100 (273)
T PRK08278         82 AKAVERFGGIDICVNNASA  100 (273)
T ss_pred             HHHHHHhCCCCEEEECCCC
Confidence            3221 11279999998874

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.93  E-value=0.079  Score=41.69  Aligned_cols=84  Identities=20%  Similarity=0.172  Sum_probs=51.5

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCc--eE--eCCCCCCCchHHHHHHHhh
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMT--DF--INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~--~v--~~~~~~~~~~~~~~i~~~~  137 (254)
                      ..++.+++|.|+ |.+|...++.+...|+ +|++++++.++.+.+    ++.+..  .+  .|....+..++.+.+..+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            447889999986 9999999988888899 899998887654333    233321  11  2222101123333333222


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . ..++|.++.+.+.
T Consensus        88 ~~~~~id~vi~~Ag~  102 (247)
T PRK08945         88 EQFGRLDGVLHNAGL  102 (247)
T ss_pred             HHhCCCCEEEECCcc
Confidence            1 1379999988764

>TIGR00417 speE spermidine synthase

Probab=95.92  E-value=0.075  Score=42.68  Aligned_cols=101  Identities=13%  Similarity=0.063  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--eEeCCCCC--CCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--DFINPDDE--PNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~v~~~~~~--~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ..++||++|+|. |..+..+++.....++++++.+++-.+.++++-..  ..++....  -..+..+.+++.  ...||+
T Consensus        72 ~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDv  148 (270)
T TIGR00417        72 NPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDV  148 (270)
T ss_pred             CCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccE
Confidence            345999998764 55566677766555899999998877777663110  00110000  002333344332  238999


Q ss_pred             EE-EcC---C------ChhHHHHHHHHcccCCcEEEEEc
Q 025336          145 CF-ECT---G------VPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       145 v~-d~~---g------~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      |+ |..   +      ....++.+.+.|+++ |.++...
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~  186 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQS  186 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcC
Confidence            98 443   1      122456888899999 9988764

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.92  E-value=0.078  Score=43.40  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=47.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-ccHHH----HHhcCCceE-e--CCCCCCCchHHHHHHHhhCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-WKKEK----GEAFGMTDF-I--NPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~~----~~~~g~~~v-~--~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ++.++||+|+ +++|...++.+...|+ +|++.++.. ++.+.    ++..|.... +  |..+  .+.....+.+....
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d--~~~~~~~~~~~~~~   87 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQ--RATADELVATAVGL   87 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHHHHHHHh
Confidence            4678999987 8999999988888899 888887643 22222    233343221 1  2222  12222222222112


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus        88 g~iD~li~nAG~   99 (306)
T PRK07792         88 GGLDIVVNNAGI   99 (306)
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.91  E-value=0.071  Score=43.61  Aligned_cols=105  Identities=10%  Similarity=0.061  Sum_probs=67.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCcccHHHH-HhcCCc--eEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGAR-MQGAAKIIGIDKNPWKKEKG-EAFGMT--DFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~-~~g~~~v~~v~~~~~~~~~~-~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      ....+++|+|+|..|.+.++.+. ..+.++|.+.++++++.+.+ .++...  .+. .     .+..+.+      .+.|
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~-----~~~~~av------~~aD  190 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-P-----LDGEAIP------EAVD  190 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-E-----CCHHHHh------hcCC
Confidence            45678999999999999888876 46777899999998776643 334311  111 1     2233333      2899


Q ss_pred             EEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHH
Q 025336          144 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIAL  187 (254)
Q Consensus       144 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~  187 (254)
                      +|+.|+.+...+-..+  ++++ -.+..+|........++..-+
T Consensus       191 iVitaT~s~~Pl~~~~--~~~g-~hi~~iGs~~p~~~El~~~~~  231 (304)
T PRK07340        191 LVVTATTSRTPVYPEA--ARAG-RLVVAVGAFTPDMAELAPRTV  231 (304)
T ss_pred             EEEEccCCCCceeCcc--CCCC-CEEEecCCCCCCcccCCHHHH
Confidence            9999887653322332  6787 788888876554445554433

>PRK06849 hypothetical protein; Provisional

Probab=95.90  E-value=0.12  Score=43.87  Aligned_cols=95  Identities=14%  Similarity=0.035  Sum_probs=60.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--eEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--DFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ...+|||+|+ .+.|+..++.++..|. +|++++.++....... ..++  ..+.....+++.+.+.+.++....++|++
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s-~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v   80 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFS-RAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL   80 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHH-HhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            3578999998 5789999999999999 9999988765443211 1122  22322221235567777776666689999


Q ss_pred             EEcCCChhHHHHHHHHcccC
Q 025336          146 FECTGVPSLLSEALETTKVG  165 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~  165 (254)
                      +-+......+......+.+.
T Consensus        81 IP~~e~~~~~a~~~~~l~~~  100 (389)
T PRK06849         81 IPTCEEVFYLSHAKEELSAY  100 (389)
T ss_pred             EECChHHHhHHhhhhhhcCC
Confidence            98776432233333445554

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.90  E-value=0.047  Score=43.80  Aligned_cols=80  Identities=18%  Similarity=0.155  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc------eEeCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT------DFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~------~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      .|..+||+|+ .++|.+.+..+...|+ +|+.+++++++.+..+.    .+..      .+.|..+  .++..+.+....
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~l~~~~~   83 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSK--EVDVEKLVEFAV   83 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCC--HHHHHHHHHHHH
Confidence            5788899986 8999999999999999 99999999887665432    2221      2234332  122222222221


Q ss_pred             C--CCCccEEEEcCCC
Q 025336          138 H--GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~--~~~~d~v~d~~g~  151 (254)
                      .  ..++|+.+++.|.
T Consensus        84 ~~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   84 EKFFGKIDILVNNAGA   99 (270)
T ss_pred             HHhCCCCCEEEEcCCc
Confidence            1  2379999998874

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.05  Score=43.26  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh---cCCce---EeCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA---FGMTD---FINPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      ++.+++|+|+ |.+|...++.+...|+ +|+.++++++..+.+++   .+...   ..|..+  ..+....+.++.. ..
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD--PASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999986 9999999998888999 89999887653333322   23221   123332  1222222222211 23


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|++|.+.|.
T Consensus        82 ~id~vi~~ag~   92 (263)
T PRK08226         82 RIDILVNNAGV   92 (263)
T ss_pred             CCCEEEECCCc
Confidence            78999998873

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.89  E-value=0.25  Score=40.36  Aligned_cols=43  Identities=19%  Similarity=0.294  Sum_probs=36.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM  115 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~  115 (254)
                      +|.|+|.|.+|...+.-+...|. +|++.++++++.+.+++.|.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~   44 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRT   44 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence            58889999999988888888898 89999999998888877653

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.082  Score=41.47  Aligned_cols=76  Identities=11%  Similarity=0.128  Sum_probs=48.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----c-CCc-eEe--CCCCCCCchHHHHHHHhhCCCC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----F-GMT-DFI--NPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~-g~~-~v~--~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      .+++|+|+ |++|...++.+...|+ +|+++++++++.+...+    . +.. .++  |..+  ..+....+.+...  .
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~--~   76 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILD--TASHAAFLDSLPA--L   76 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC--hHHHHHHHHHHhh--c
Confidence            47899986 9999999999888999 89999998876544321    1 111 122  3332  2333333333322  5


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++.+.|.
T Consensus        77 ~d~vv~~ag~   86 (243)
T PRK07102         77 PDIVLIAVGT   86 (243)
T ss_pred             CCEEEECCcC
Confidence            7999987764

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.89  E-value=0.041  Score=44.19  Aligned_cols=46  Identities=17%  Similarity=0.104  Sum_probs=38.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      +...+.+++|+|+|+.+++++..++..|+.+++++.++.++.+.+.
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            3445568999999999999999999999978999999988777654

>PLN02928 oxidoreductase family protein

Probab=95.87  E-value=0.14  Score=42.75  Aligned_cols=98  Identities=20%  Similarity=0.322  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC----C-ceEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG----M-TDFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g----~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      .|.++.|+|.|.+|+.+++.++.+|+ +|++.+++..+... ..++    . ....+... ...++.+.+.      ..|
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~L~ell~------~aD  228 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKG-GHEDIYEFAG------EAD  228 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccC-cccCHHHHHh------hCC
Confidence            57899999999999999999999999 99999876332111 1110    0 00000000 0022222221      568


Q ss_pred             EEEEcCCChhH-----HHHHHHHcccCCcEEEEEccCC
Q 025336          144 YCFECTGVPSL-----LSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       144 ~v~d~~g~~~~-----~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +|+.+......     -...+..++++ ..+|-++...
T Consensus       229 iVvl~lPlt~~T~~li~~~~l~~Mk~g-a~lINvaRG~  265 (347)
T PLN02928        229 IVVLCCTLTKETAGIVNDEFLSSMKKG-ALLVNIARGG  265 (347)
T ss_pred             EEEECCCCChHhhcccCHHHHhcCCCC-eEEEECCCcc
Confidence            88877653221     13566778887 7777777653

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.87  E-value=0.052  Score=43.27  Aligned_cols=80  Identities=21%  Similarity=0.298  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.+++|+|+ +++|...+..+...|+ +|+.+++++++.+.+    ++.+...   ..|..+  .......+.+... -
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   85 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD--EDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHhC
Confidence            4678999987 8999998888888899 888888887665443    2334322   123333  1223333332221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|.++.+.|.
T Consensus        86 ~~id~li~~ag~   97 (265)
T PRK07097         86 GVIDILVNNAGI   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            269999998874

>TIGR00452 methyltransferase, putative

Probab=95.87  E-value=0.046  Score=44.81  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=60.9

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHH---HHhc-CC---ceEeCCCCCCCchHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK---GEAF-GM---TDFINPDDEPNKSISELV  133 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~---~~~~-g~---~~v~~~~~~~~~~~~~~i  133 (254)
                      +.......++++||-+|+|. |..+..+++. |+..|++++.++.-...   ++.+ +.   ..+..      .+    +
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~------~~----i  180 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGS-GYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP------LG----I  180 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCC-cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE------CC----H
Confidence            33455667789999999875 7766666654 66579999988754432   2222 21   11221      11    1


Q ss_pred             HHhhCCCCccEEEEcC-----CC-hhHHHHHHHHcccCCcEEEEE
Q 025336          134 KGITHGMGVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      .++.....||+|+-..     .. ...+..+.+.|+++ |++++-
T Consensus       181 e~lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG-G~Lvle  224 (314)
T TIGR00452       181 EQLHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK-GELVLE  224 (314)
T ss_pred             HHCCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC-CEEEEE
Confidence            2222223799998532     12 24678888999999 999864

Known examples to date are restricted to the proteobacteria.

>PRK06484 short chain dehydrogenase; Validated

Probab=95.86  E-value=0.04  Score=48.57  Aligned_cols=80  Identities=20%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ +++|...++.+...|+ +|+.++++.++.+.+ ++++...   ..|..+  +++....+.++.. ..++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD--EAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            5678999986 8999999999999999 999998888776654 3455322   234433  2333333333321 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        81 D~li~nag~   89 (520)
T PRK06484         81 DVLVNNAGV   89 (520)
T ss_pred             CEEEECCCc
Confidence            999998874

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.86  E-value=0.057  Score=39.51  Aligned_cols=85  Identities=14%  Similarity=0.083  Sum_probs=54.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC------ceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM------TDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      +|.|+|+|+.|.+++..+...|. +|....++++..+.++..+.      +..+..+-.-..++.+.+      .+.|++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~------~~ad~I   73 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL------EDADII   73 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH------TT-SEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh------CcccEE
Confidence            58899999999999999999998 99999999887777765221      111111000012333333      278999


Q ss_pred             EEcCCChhHHHHHHHHccc
Q 025336          146 FECTGVPSLLSEALETTKV  164 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~  164 (254)
                      +-++... ..+..++.+++
T Consensus        74 iiavPs~-~~~~~~~~l~~   91 (157)
T PF01210_consen   74 IIAVPSQ-AHREVLEQLAP   91 (157)
T ss_dssp             EE-S-GG-GHHHHHHHHTT
T ss_pred             EecccHH-HHHHHHHHHhh
Confidence            9988876 45666666555

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.86  E-value=0.064  Score=42.74  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=48.5

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCC---cccHHHH-HhcCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKN---PWKKEKG-EAFGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~---~~~~~~~-~~~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+   +++|.+.++.+...|+ +|+.+.+.   +++.+.+ ++++....  .|-.+  .++....+.+... 
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~   81 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVAS--DEQIDALFASLGQH   81 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCC--HHHHHHHHHHHHHH
Confidence            4678999983   5899999988888999 88877543   2333322 23443222  23332  2344444444322 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        82 ~g~iD~lvnnAG~   94 (260)
T PRK06997         82 WDGLDGLVHSIGF   94 (260)
T ss_pred             hCCCcEEEEcccc
Confidence            1379999998863

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=95.86  E-value=0.043  Score=43.60  Aligned_cols=74  Identities=12%  Similarity=0.041  Sum_probs=52.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|||+|+++-|..+++.+...|. +|++..+++.+.+.+...|...++...- +..+    +.++....++|+|+|++..
T Consensus         2 ~ILvlGGT~egr~la~~L~~~g~-~v~~s~~t~~~~~~~~~~g~~~v~~g~l-~~~~----l~~~l~~~~i~~VIDAtHP   75 (256)
T TIGR00715         2 TVLLMGGTVDSRAIAKGLIAQGI-EILVTVTTSEGKHLYPIHQALTVHTGAL-DPQE----LREFLKRHSIDILVDATHP   75 (256)
T ss_pred             eEEEEechHHHHHHHHHHHhCCC-eEEEEEccCCccccccccCCceEEECCC-CHHH----HHHHHHhcCCCEEEEcCCH
Confidence            68999885559998888888898 8999989988887777776555442221 1122    3333333489999999875

This enzyme was found to be a monomer by gel filtration.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.85  E-value=0.057  Score=42.27  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=29.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +|||.|+|++|...+..+...|.+++..+|.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999999999999988764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.84  E-value=0.082  Score=41.22  Aligned_cols=74  Identities=18%  Similarity=0.235  Sum_probs=53.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh--cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA--FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      .++|.|+|.+|...++.+...|. .|++++.++++.+...+  +... ++..+    ..-.+.+++. +-..+|.++=++
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~-~v~gd----~t~~~~L~~a-gi~~aD~vva~t   74 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTH-VVIGD----ATDEDVLEEA-GIDDADAVVAAT   74 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceE-EEEec----CCCHHHHHhc-CCCcCCEEEEee
Confidence            57889999999999999999999 99999999998877333  4443 33222    1122334443 445899999888


Q ss_pred             CCh
Q 025336          150 GVP  152 (254)
Q Consensus       150 g~~  152 (254)
                      +..
T Consensus        75 ~~d   77 (225)
T COG0569          75 GND   77 (225)
T ss_pred             CCC
Confidence            874

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.84  E-value=0.16  Score=41.17  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=64.4

Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEc-CCcccHHHHHhcCCceEeCCCCCCC
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LGTVGLGAVDGARMQGAAKIIGID-KNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g~~G~~~~~~a~~~g~~~v~~v~-~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                      .+||+....+..|....---.|.+|+|+| ++.+|.-++.++...|+ .|++.. +++                      
T Consensus       137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~----------------------  193 (296)
T PRK14188        137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR----------------------  193 (296)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC----------------------
Confidence            45666555555553332234799999999 69999999999999999 787762 221                      


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                       ++.    +..  +..|+++-++|.+..+...+  ++++ ..++.+|..
T Consensus       194 -~l~----e~~--~~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin  232 (296)
T PRK14188        194 -DLP----AVC--RRADILVAAVGRPEMVKGDW--IKPG-ATVIDVGIN  232 (296)
T ss_pred             -CHH----HHH--hcCCEEEEecCChhhcchhe--ecCC-CEEEEcCCc
Confidence             111    111  16799999999886555544  7887 888888864

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.84  E-value=0.22  Score=40.75  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=36.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM  115 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~  115 (254)
                      +|.++|.|.+|...++-+...|. +|++.++++++.+.+.+.|+
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~g~   44 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAEEGA   44 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCC
Confidence            58889999999988888888898 89999999988887766664

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=95.84  E-value=0.079  Score=45.12  Aligned_cols=74  Identities=24%  Similarity=0.303  Sum_probs=47.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcC--Cce-EeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFG--MTD-FINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g--~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      ++.+++|+|+ |++|.+.++.+...|+ +|+++++++++.+... ..+  ... ..|..+   .+   .+.+..  .++|
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd---~~---~v~~~l--~~ID  247 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVGQ---EA---ALAELL--EKVD  247 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC---HH---HHHHHh--CCCC
Confidence            4679999987 9999999998888999 8998888766543321 111  111 123332   22   222222  2799


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++++.|.
T Consensus       248 iLInnAGi  255 (406)
T PRK07424        248 ILIINHGI  255 (406)
T ss_pred             EEEECCCc
Confidence            99988764

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.82  E-value=0.087  Score=41.23  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc-HHH----HHhcCCce-Ee--CCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK-KEK----GEAFGMTD-FI--NPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~-~~~----~~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|...+..+...|+ +|+++.++.++ .+.    ++..+... .+  |..+  ...+.+.+.+... 
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   80 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD--AESVERAVDEAKAE   80 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            3568999987 9999999999998999 77666665442 221    22233222 22  3333  2333333333322 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|.++.+.|.
T Consensus        81 ~~~id~vi~~ag~   93 (248)
T PRK05557         81 FGGVDILVNNAGI   93 (248)
T ss_pred             cCCCCEEEECCCc
Confidence            1378999998874

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.82  E-value=0.22  Score=42.70  Aligned_cols=74  Identities=20%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhh---------CCCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT---------HGMG  141 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~---------~~~~  141 (254)
                      .+|.|+|.|-+|..++..+...|. +|+++++++++.+.++. |..   ...+   +.+.+.+++..         .-..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~-g~~---~~~e---~~l~~~l~~~~~~g~l~~~~~~~~   75 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINR-GEI---HIVE---PDLDMVVKTAVEGGYLRATTTPEP   75 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHC-CCC---CcCC---CCHHHHHHHHhhcCceeeeccccc
Confidence            468999999999999888888899 99999999998887653 321   1122   33333333211         1126


Q ss_pred             ccEEEEcCCCh
Q 025336          142 VDYCFECTGVP  152 (254)
Q Consensus       142 ~d~v~d~~g~~  152 (254)
                      .|++|-|++.+
T Consensus        76 aDvvii~vptp   86 (415)
T PRK11064         76 ADAFLIAVPTP   86 (415)
T ss_pred             CCEEEEEcCCC
Confidence            89999999874

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.80  E-value=0.11  Score=42.37  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .|.+|.|+|.|.+|+..++.++.+|+ +|++.+++.
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~  155 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY  155 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            57899999999999999999999999 999998763

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.79  E-value=0.07  Score=42.23  Aligned_cols=100  Identities=15%  Similarity=0.096  Sum_probs=59.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC--CceE-eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG--MTDF-INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g--~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++.+++++.......+  ...+ .|..+   .  ...+.+... .++|+
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d---~--~~~l~~~~~-~~~d~   88 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE---G--SDKLVEAIG-DDSDA   88 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC---C--HHHHHHHhh-cCCCE
Confidence            4578999997 9999999988888899 8998888876654332211  2211 23322   1  112222221 27999


Q ss_pred             EEEcCCChh-------------HHHHHHHHcccC-CcEEEEEccC
Q 025336          145 CFECTGVPS-------------LLSEALETTKVG-KGKVIVIGVG  175 (254)
Q Consensus       145 v~d~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~  175 (254)
                      +|.+.|...             ....+++.+... .++++.+++.
T Consensus        89 vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         89 VICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             EEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            998876421             123444444432 1578877654

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.78  E-value=0.1  Score=42.05  Aligned_cols=96  Identities=4%  Similarity=0.014  Sum_probs=58.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhCCCC-ccEEEEc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITHGMG-VDYCFEC  148 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~-~d~v~d~  148 (254)
                      +|||+|+ |.+|..+++.+...|. +|.+.++++++..   ..+... ..|..+  ++.+...++....-.+ +|.++.+
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~-~V~~~~R~~~~~~---~~~~~~~~~d~~d--~~~l~~a~~~~~~~~g~~d~v~~~   74 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV-PFLVASRSSSSSA---GPNEKHVKFDWLD--EDTWDNPFSSDDGMEPEISAVYLV   74 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC-cEEEEeCCCcccc---CCCCccccccCCC--HHHHHHHHhcccCcCCceeEEEEe
Confidence            4899987 9999999999998999 8999989876542   123222 235544  2333333322212135 8999877


Q ss_pred             CCCh----hHHHHHHHHcccCCc--EEEEEcc
Q 025336          149 TGVP----SLLSEALETTKVGKG--KVIVIGV  174 (254)
Q Consensus       149 ~g~~----~~~~~~~~~l~~~~G--~~v~~g~  174 (254)
                      .+..    ......++.+... |  ++|.++.
T Consensus        75 ~~~~~~~~~~~~~~i~aa~~~-gv~~~V~~Ss  105 (285)
T TIGR03649        75 APPIPDLAPPMIKFIDFARSK-GVRRFVLLSA  105 (285)
T ss_pred             CCCCCChhHHHHHHHHHHHHc-CCCEEEEeec
Confidence            6631    1233444554444 4  6776654

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.75  E-value=0.073  Score=46.08  Aligned_cols=70  Identities=29%  Similarity=0.343  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc-ccH----HHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP-WKK----EKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~----~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      .+.+|+|+|+|.+|+.+++.+...|+ +|++++.+. +..    +.+.+.|..... ...   .+   .   . . .++|
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~---~---~-~-~~~d   70 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIELVL-GEY---PE---E---F-L-EGVD   70 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCEEEe-CCc---ch---h---H-h-hcCC
Confidence            46789999998899999999999999 899998864 222    333445654222 221   11   1   1 1 2789


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +|+.+.|.
T Consensus        71 ~vv~~~g~   78 (450)
T PRK14106         71 LVVVSPGV   78 (450)
T ss_pred             EEEECCCC
Confidence            99998885

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=95.74  E-value=0.27  Score=37.89  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ++++++||=+|+|+ |..+..+++..+. .+|++++.++..     ......++..+- ......+.+.+......+|+|
T Consensus        49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~-~~~~~~~~i~~~~~~~~~D~V  121 (209)
T PRK11188         49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDF-RDELVLKALLERVGDSKVQVV  121 (209)
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCC-CChHHHHHHHHHhCCCCCCEE
Confidence            57888998888765 6666667776653 389999987621     111112232211 113334445443344589999


Q ss_pred             EEcC-----CC------------hhHHHHHHHHcccCCcEEEEE
Q 025336          146 FECT-----GV------------PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       146 ~d~~-----g~------------~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      +-..     +.            ...++.+.+.|+++ |+++..
T Consensus       122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~  164 (209)
T PRK11188        122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVK  164 (209)
T ss_pred             ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEE
Confidence            9532     22            12467788899999 998874

>PRK05650 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.071  Score=42.63  Aligned_cols=77  Identities=18%  Similarity=0.193  Sum_probs=48.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-Ee--CCCCCCCchHHHHHHHhhC-CCCc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-FI--NPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++||+|+ |++|...++.+...|. +|+.++++.++.+.+    +..+.+. ++  |..+  ..++...+.++.. ..++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD--YSQLTALAQACEEKWGGI   78 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            6899987 9999999988888899 899998887665533    2233222 22  3222  1222333322221 1379


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |++|.+.|.
T Consensus        79 d~lI~~ag~   87 (270)
T PRK05650         79 DVIVNNAGV   87 (270)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.067  Score=42.42  Aligned_cols=76  Identities=16%  Similarity=0.189  Sum_probs=47.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eEeCCCCCCCchHHHHHHHhh-CCCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DFINPDDEPNKSISELVKGIT-HGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~-~~~~~d~v  145 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++..   .-... ...|..+  .+.....+.++. ...++|++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~---~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~v   81 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDDL---PEGVEFVAADLTT--AEGCAAVARAVLERLGGVDIL   81 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhhc---CCceeEEecCCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4788999986 8999999998888999 8999988754321   10111 1123333  122222222221 12379999


Q ss_pred             EEcCC
Q 025336          146 FECTG  150 (254)
Q Consensus       146 ~d~~g  150 (254)
                      +++.|
T Consensus        82 i~~ag   86 (260)
T PRK06523         82 VHVLG   86 (260)
T ss_pred             EECCc
Confidence            99887

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.74  E-value=0.057  Score=42.83  Aligned_cols=79  Identities=22%  Similarity=0.209  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCc-eE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMT-DF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++.++ ++.+.+    .+.+.. .+  .|..+  .+.....+.+... .
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   89 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK--PESAEKVVKEALEEF   89 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4689999987 9999999999999999 88888777 333332    223322 12  23333  1223333333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++.+.|.
T Consensus        90 g~id~li~~ag~  101 (258)
T PRK06935         90 GKIDILVNNAGT  101 (258)
T ss_pred             CCCCEEEECCCC
Confidence            278999998874

>PRK03612 spermidine synthase; Provisional

Probab=95.73  E-value=0.082  Score=46.66  Aligned_cols=102  Identities=15%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC-Cc----eEeCCCCC--CCchHHHHHHHhhCCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG-MT----DFINPDDE--PNKSISELVKGITHGM  140 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g-~~----~v~~~~~~--~~~~~~~~i~~~~~~~  140 (254)
                      ++.++||++|+|. |..+..++++....+|++++.+++-.+.+++.. ..    ..++....  -..|..+.+++. . .
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~-~  372 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-A-E  372 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-C-C
Confidence            4567899998763 666677777655359999999999998888721 00    01110000  013344444432 2 3


Q ss_pred             CccEEEEcCCCh-----------hHHHHHHHHcccCCcEEEEEc
Q 025336          141 GVDYCFECTGVP-----------SLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       141 ~~d~v~d~~g~~-----------~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .||+|+-....+           +.++.+.+.++++ |.++.-.
T Consensus       373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg-G~lv~~~  415 (521)
T PRK03612        373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD-GLLVVQS  415 (521)
T ss_pred             CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC-eEEEEec
Confidence            899998432211           2456888899999 9988654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.73  E-value=0.069  Score=48.05  Aligned_cols=93  Identities=10%  Similarity=0.085  Sum_probs=66.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      ++|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...++ |..+   ++   .+++ .+-...|.++-+.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~---~~---~L~~-agi~~A~~vv~~~  472 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYGDATQ---LE---LLRA-AGAEKAEAIVITC  472 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEeeCCC---HH---HHHh-cCCccCCEEEEEe
Confidence            579999999999999999999999 899999999999999998865443 2222   22   2322 3444899999999


Q ss_pred             CChhHHH---HHHHHcccCCcEEEEE
Q 025336          150 GVPSLLS---EALETTKVGKGKVIVI  172 (254)
Q Consensus       150 g~~~~~~---~~~~~l~~~~G~~v~~  172 (254)
                      ++...-.   ...+...|. .+++.-
T Consensus       473 ~d~~~n~~i~~~~r~~~p~-~~IiaR  497 (601)
T PRK03659        473 NEPEDTMKIVELCQQHFPH-LHILAR  497 (601)
T ss_pred             CCHHHHHHHHHHHHHHCCC-CeEEEE
Confidence            8753322   233445565 565543

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.73  E-value=0.086  Score=45.60  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccc----HHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWK----KEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~----~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+.+++|+|.|.+|+++++++...|+ +|++.+.+...    .+.+++.|.........   .+.   +    . .++|+
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~---~----~-~~~d~   71 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIKVICGSHP---LEL---L----D-EDFDL   71 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCEEEeCCCC---HHH---h----c-CcCCE
Confidence            36789999998899999999999999 89998865422    23345556543322221   111   1    1 15889


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++.+.|-
T Consensus        72 vV~s~gi   78 (447)
T PRK02472         72 MVKNPGI   78 (447)
T ss_pred             EEECCCC
Confidence            9887764

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.72  E-value=0.16  Score=41.44  Aligned_cols=43  Identities=23%  Similarity=0.487  Sum_probs=36.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM  115 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~  115 (254)
                      +|.++|.|.+|...+.-+...|. +|++.++++++.+.+++.|+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~g~   44 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAGKLGI   44 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCC
Confidence            47888999999988888888898 89999999888887776664

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.72  E-value=0.21  Score=41.96  Aligned_cols=61  Identities=26%  Similarity=0.290  Sum_probs=44.4

Q ss_pred             CCccccccccchhhhhhHHHHHhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEV-EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~-~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      ...++|....+.+++- .++ ...+. -+|.+|.|.|.|.+|+.+++.+...|+ +|++++.+..
T Consensus       180 ~~r~~aTg~Gv~~~~~-~a~-~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g  241 (411)
T COG0334         180 LGRSEATGYGVFYAIR-EAL-KALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG  241 (411)
T ss_pred             CCCCcccceehHHHHH-HHH-HHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            3345555555554444 343 34443 489999999999999999999998899 8988877655

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.70  E-value=0.049  Score=38.26  Aligned_cols=79  Identities=19%  Similarity=0.361  Sum_probs=47.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc-CCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGID-KNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~-~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .-+|-|+|+|.+|..+...++..|. .|..+. ++.+..+.+.. ++...+.+..+            ..  ...|++|-
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~~------------~~--~~aDlv~i   74 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLEE------------IL--RDADLVFI   74 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TTG------------GG--CC-SEEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCccccccccccccccccccccc------------cc--ccCCEEEE
Confidence            3578899999999999999999999 887774 44555555544 34333332221            11  27899999


Q ss_pred             cCCChhHHHHHHHHccc
Q 025336          148 CTGVPSLLSEALETTKV  164 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~  164 (254)
                      ++.+. .+......+..
T Consensus        75 avpDd-aI~~va~~La~   90 (127)
T PF10727_consen   75 AVPDD-AIAEVAEQLAQ   90 (127)
T ss_dssp             -S-CC-HHHHHHHHHHC
T ss_pred             EechH-HHHHHHHHHHH
Confidence            99887 56666666543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.70  E-value=0.087  Score=41.70  Aligned_cols=80  Identities=16%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ +++|..+++.+...|+ +++.++++.++.+.+    +..+...   ..|..+  .++..+.+.+... -
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   86 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFALSKL   86 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 9999999998888999 888888876655443    2233221   234433  1223333333211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++.+.|.
T Consensus        87 ~~~d~li~~ag~   98 (255)
T PRK06113         87 GKVDILVNNAGG   98 (255)
T ss_pred             CCCCEEEECCCC
Confidence            378999998873

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.69  E-value=0.092  Score=41.55  Aligned_cols=80  Identities=14%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-ccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhC-CCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-WKKEKGEAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~  144 (254)
                      .+.+++|+|+ |++|...++.+...|+ +|+.+.++. +..+.++..+... ..|..+  .++....+.+... ..++|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN--RDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            3678999986 9999999999888999 777764443 3333444333322 224333  2333333333221 127999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++.+.|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.69  E-value=0.077  Score=41.56  Aligned_cols=80  Identities=23%  Similarity=0.188  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce-E--eCCCCCCCchHHHHHHHhh-CCCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD-F--INPDDEPNKSISELVKGIT-HGMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~-v--~~~~~~~~~~~~~~i~~~~-~~~~~  142 (254)
                      ++.++||+|+ |.+|..+++.+...|+ .|+...++.++.+.+. ..+... +  .|..+  .+.+...+.+.. ...++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD--RDEVKALGQKAEADLEGV   81 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            3678999986 9999999988888999 8888877766665442 333221 2  23332  122222222221 12379


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |.++.+.|.
T Consensus        82 d~vi~~ag~   90 (245)
T PRK12936         82 DILVNNAGI   90 (245)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK12743 oxidoreductase; Provisional

Probab=95.69  E-value=0.083  Score=41.87  Aligned_cols=79  Identities=11%  Similarity=0.035  Sum_probs=47.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-CcccHHH----HHhcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-NPWKKEK----GEAFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~----~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      +.++||+|+ |++|..+++.+...|+ +|+.+.+ +.++.+.    ++..+... .  .|..+  .+.....+.++.. .
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   78 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD--LPEGAQALDKLIQRL   78 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            468999987 8999999999999999 7877644 4333322    23345322 2  23333  2223233333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++.+.|.
T Consensus        79 ~~id~li~~ag~   90 (256)
T PRK12743         79 GRIDVLVNNAGA   90 (256)
T ss_pred             CCCCEEEECCCC
Confidence            278999998874

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=95.67  E-value=0.051  Score=37.33  Aligned_cols=96  Identities=22%  Similarity=0.258  Sum_probs=57.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      |.+||-.|+|. |...+.+++.... ++++++.+++..+.++.    .+.+.-++...   .++.+....... ..+|+|
T Consensus         1 g~~vlD~~~G~-G~~~~~~~~~~~~-~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~---~D~~~~~~~~~~-~~~D~I   74 (117)
T PF13659_consen    1 GDRVLDPGCGS-GTFLLAALRRGAA-RVTGVDIDPEAVELARRNLPRNGLDDRVEVIV---GDARDLPEPLPD-GKFDLI   74 (117)
T ss_dssp             TEEEEEETSTT-CHHHHHHHHHCTC-EEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE---SHHHHHHHTCTT-T-EEEE
T ss_pred             CCEEEEcCcch-HHHHHHHHHHCCC-eEEEEEECHHHHHHHHHHHHHccCCceEEEEE---CchhhchhhccC-ceeEEE
Confidence            45778776543 4555555555434 99999999998888765    23210011111   445444433333 489999


Q ss_pred             EEcCC-C-------------hhHHHHHHHHcccCCcEEEEE
Q 025336          146 FECTG-V-------------PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       146 ~d~~g-~-------------~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      +-... .             ...++.+.+.++++ |.++.+
T Consensus        75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~  114 (117)
T PF13659_consen   75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFI  114 (117)
T ss_dssp             EE--STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence            85332 1             12377889999999 988765

...

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.67  E-value=0.053  Score=34.61  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=29.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      +|+|+|+|.+|.-++..++.+|. +|..+.+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch
Confidence            58899999999999999999999 8999877643

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.66  E-value=0.2  Score=40.85  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=36.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM  115 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~  115 (254)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~~g~   45 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVDKGA   45 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHcCC
Confidence            68899999999998888888898 89999999988887766554

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.63  E-value=0.071  Score=37.10  Aligned_cols=91  Identities=21%  Similarity=0.134  Sum_probs=50.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCCc-ccHHHHHhcC----C-ceEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           72 SVAVLGL-GTVGLGAVDGARM-QGAAKIIGIDKNP-WKKEKGEAFG----M-TDFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~-~g~~~v~~v~~~~-~~~~~~~~~g----~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      +|.|+|+ |.+|..+++++.. -.+..+.++.++. ....+...++    . +..+...+         ...+   ..+|
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~D   68 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDAD---------PEEL---SDVD   68 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETS---------GHHH---TTES
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecc---------hhHh---hcCC
Confidence            5889996 9999999988875 4452334444444 2222222222    1 22221111         1112   2899


Q ss_pred             EEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          144 YCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       144 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +||.|.+.....+..-..+..+ -+++..+..
T Consensus        69 vvf~a~~~~~~~~~~~~~~~~g-~~ViD~s~~   99 (121)
T PF01118_consen   69 VVFLALPHGASKELAPKLLKAG-IKVIDLSGD   99 (121)
T ss_dssp             EEEE-SCHHHHHHHHHHHHHTT-SEEEESSST
T ss_pred             EEEecCchhHHHHHHHHHhhCC-cEEEeCCHH
Confidence            9999999875544444455665 577766543

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.60  E-value=0.11  Score=40.28  Aligned_cols=92  Identities=12%  Similarity=0.002  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc-ccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP-WKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      ++.+|||+|+|.++.-=++.+...|+ +|+++...- +.+..+...|.-..+. ++     +.+.  .+   .++++||-
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~~-r~-----~~~~--dl---~g~~LVia   91 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLIK-GN-----YDKE--FI---KDKHLIVI   91 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEEe-CC-----CChH--Hh---CCCcEEEE
Confidence            57789999999999887888888999 888885543 1222222333322221 21     1110  11   28899999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEc
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      |++.+..-..+....... +.++...
T Consensus        92 ATdD~~vN~~I~~~a~~~-~~lvn~v  116 (223)
T PRK05562         92 ATDDEKLNNKIRKHCDRL-YKLYIDC  116 (223)
T ss_pred             CCCCHHHHHHHHHHHHHc-CCeEEEc
Confidence            999884434444445554 5555443

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.59  E-value=0.05  Score=40.02  Aligned_cols=45  Identities=22%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG  114 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g  114 (254)
                      .|..|++.|+ -++|+..++-+...|+ +|+++.++++.+..+-+.-
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~   51 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKET   51 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhC
Confidence            4778899998 4899999999999999 9999999998887765443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.58  E-value=0.27  Score=42.32  Aligned_cols=103  Identities=18%  Similarity=0.211  Sum_probs=65.1

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCceE--eCCCCCCCchHHHHHHH
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMTDF--INPDDEPNKSISELVKG  135 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~~v--~~~~~~~~~~~~~~i~~  135 (254)
                      ....+++|++||=.|+|+ |..+++++..++ ..+|+++|.++++++.+++    +|.+.+  +..+.   .++    ..
T Consensus       231 ~~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l----~~  302 (431)
T PRK14903        231 LLMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERL----TE  302 (431)
T ss_pred             HHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhh----hh
Confidence            345778999999887765 556666777653 2389999999999988754    565432  21111   111    11


Q ss_pred             hhCCCCccEEE-E--cCCCh-------------------------hHHHHHHHHcccCCcEEEEEccC
Q 025336          136 ITHGMGVDYCF-E--CTGVP-------------------------SLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       136 ~~~~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ...+ .||.|+ |  |+|..                         ..+..+++.++++ |.++.....
T Consensus       303 ~~~~-~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsTCs  368 (431)
T PRK14903        303 YVQD-TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG-GILLYSTCT  368 (431)
T ss_pred             hhhc-cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEECC
Confidence            1122 799998 3  54431                         1266788899999 997765443

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.57  E-value=0.094  Score=41.33  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=49.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce---EeCCCCCCCchHHHHHHHhh-CCCC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD---FINPDDEPNKSISELVKGIT-HGMG  141 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~~~i~~~~-~~~~  141 (254)
                      .++||+|+ |.+|..++..+...|. +|+++++++++.+.+..    .+...   ..|..+  .+++...+.++. ...+
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   78 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK--EDEIADMIAAAAAEFGG   78 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhcCC
Confidence            47999987 9999999998888999 89999898776655433    22221   124333  123333332321 1236


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|.+|.+.+.
T Consensus        79 ~d~vi~~a~~   88 (255)
T TIGR01963        79 LDILVNNAGI   88 (255)
T ss_pred             CCEEEECCCC
Confidence            8999987764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.57  E-value=0.086  Score=43.42  Aligned_cols=100  Identities=17%  Similarity=0.287  Sum_probs=60.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC----CCeEEEEcC--CcccHHHHHhcCC--------------ceEeCCCCC---CCch
Q 025336           72 SVAVLGLGTVGLGAVDGARMQG----AAKIIGIDK--NPWKKEKGEAFGM--------------TDFINPDDE---PNKS  128 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g----~~~v~~v~~--~~~~~~~~~~~g~--------------~~v~~~~~~---~~~~  128 (254)
                      +|.|.|.|.+|+..++.+...+    + +|+++-.  +.+.+.++-++..              ..+++.+..   ...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~-~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGI-EVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCe-EEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            4789999999999999988653    5 6666622  2233344433221              011111110   0001


Q ss_pred             HHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       129 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ..+ + .+ +..++|+||+|+|.....+.+...+..+ ++.|+++.+.
T Consensus        80 p~~-~-~w-~~~gvDiVie~tG~~~s~e~a~~~l~aG-a~~V~~SaP~  123 (325)
T TIGR01532        80 PEA-L-PW-RALGVDLVLDCTGVYGNREQGERHIRAG-AKRVLFSHPG  123 (325)
T ss_pred             hhh-c-cc-cccCCCEEEEccchhccHHHHHHHHHcC-CeEEEecCCC
Confidence            111 1 11 2238999999999887778888889888 8888888663

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=95.57  E-value=0.089  Score=43.60  Aligned_cols=98  Identities=18%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhh-CCCCccEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT-HGMGVDYCF  146 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~-~~~~~d~v~  146 (254)
                      .++.+||-+|+|. |..+..+++..+..+++++|.+++-.+.+++.....-+....   .+.    .+.. ....||+|+
T Consensus       112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~---gD~----e~lp~~~~sFDvVI  183 (340)
T PLN02490        112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIE---GDA----EDLPFPTDYADRYV  183 (340)
T ss_pred             CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEe---ccH----HhCCCCCCceeEEE
Confidence            4678899998765 777778888765448999999988777776642111011111   222    1111 123699988


Q ss_pred             EcCC------ChhHHHHHHHHcccCCcEEEEEcc
Q 025336          147 ECTG------VPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       147 d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .+..      ....+..+.+.|+++ |++++.+.
T Consensus       184 s~~~L~~~~d~~~~L~e~~rvLkPG-G~LvIi~~  216 (340)
T PLN02490        184 SAGSIEYWPDPQRGIKEAYRVLKIG-GKACLIGP  216 (340)
T ss_pred             EcChhhhCCCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            6431      123578899999999 99987754

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.56  E-value=0.15  Score=39.54  Aligned_cols=102  Identities=17%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce---------EeCCCCCCCchHHHHHH
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD---------FINPDDEPNKSISELVK  134 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~---------v~~~~~~~~~~~~~~i~  134 (254)
                      ..+.++.+||+.|+|. |.-++-+|. .|+ +|++++.++.-.+.+. +.+...         .....+  ..-....+.
T Consensus        33 ~~~~~~~rvL~~gCG~-G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~--v~~~~~D~~  107 (218)
T PRK13255         33 LALPAGSRVLVPLCGK-SLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE--ITIYCGDFF  107 (218)
T ss_pred             hCCCCCCeEEEeCCCC-hHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCc--eEEEECccc
Confidence            3445678999998774 777777765 799 9999999998777642 222110         000000  000000111


Q ss_pred             Hhh--CCCCccEEEEcCC----C----hhHHHHHHHHcccCCcEEEEE
Q 025336          135 GIT--HGMGVDYCFECTG----V----PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       135 ~~~--~~~~~d~v~d~~g----~----~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ++.  ....||.++|...    .    +..+..+.++|+|+ |++.++
T Consensus       108 ~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~  154 (218)
T PRK13255        108 ALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLLV  154 (218)
T ss_pred             CCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEE
Confidence            111  1127899999653    1    23578888999999 975543

>PRK07578 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.35  Score=36.66  Aligned_cols=63  Identities=24%  Similarity=0.367  Sum_probs=40.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      ++||.|+ |++|...+..+... . +|+.+++++.          ....|..+  .++....+.+.  + ++|+++.+.|
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~-~vi~~~r~~~----------~~~~D~~~--~~~~~~~~~~~--~-~id~lv~~ag   64 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-H-EVITAGRSSG----------DVQVDITD--PASIRALFEKV--G-KVDAVVSAAG   64 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-C-cEEEEecCCC----------ceEecCCC--hHHHHHHHHhc--C-CCCEEEECCC
Confidence            5899986 89999888776655 6 8998877653          12234443  12233333322  2 7899998887


Q ss_pred             C
Q 025336          151 V  151 (254)
Q Consensus       151 ~  151 (254)
                      .
T Consensus        65 ~   65 (199)
T PRK07578         65 K   65 (199)
T ss_pred             C
Confidence            4

>PRK07775 short chain dehydrogenase; Provisional

Probab=95.55  E-value=0.11  Score=41.80  Aligned_cols=80  Identities=15%  Similarity=0.064  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      +..+++|+|+ |.+|..+++.+...|+ +|++++++.++.+.+    +..+... .  .|..+  .+++...+.+... -
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   85 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD--PDSVKSFVAQAEEAL   85 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHhc
Confidence            3468999987 9999999998888999 888887776544332    2234322 1  23333  1233333333211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|.+.|.
T Consensus        86 ~~id~vi~~Ag~   97 (274)
T PRK07775         86 GEIEVLVSGAGD   97 (274)
T ss_pred             CCCCEEEECCCc
Confidence            278999998874

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.55  E-value=0.23  Score=40.26  Aligned_cols=40  Identities=23%  Similarity=0.233  Sum_probs=34.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      .+|.|+|+|.+|...++.+...|. +|+..+.+++..+.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence            479999999999999998888899 8999999987766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		1e-37
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		4e-37
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		2e-34
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		8e-33
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		9e-33
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		9e-32
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		2e-31
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		2e-31
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		2e-31
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		2e-31
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		2e-31
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		3e-31
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		3e-31
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		3e-31
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		3e-31
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		3e-31
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		3e-31
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		4e-31
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		4e-31
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		4e-31
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		5e-31
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		7e-31
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		7e-30
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		8e-30
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		8e-30
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		2e-29
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		3e-29
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		3e-29
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		4e-29
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		5e-28
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		3e-24
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		4e-11
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-07
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		5e-07
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		5e-07
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		6e-07
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		6e-07
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		7e-06
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		1e-05
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		4e-05
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		1e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 131/256 (51%), Gaps = 10/256 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D  SR SV G+ +YH    ST+S+Y V+    V ++DP+  L     L CG  TG GA
Sbjct: 125 MNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGA 184
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
            W  A+VE                     +  GA++IIGID +  K E  + FG+ +F+N
Sbjct: 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVN 244
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D  +K I E++  +T G GVDY FEC G  S++  ALE                    
Sbjct: 245 PKDH-DKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 302
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +  P  ++     GR  KGT FGG K+++ +P L++K  NKE K+ + +TH++ L EI+
Sbjct: 303 ISTRPFQLVT----GRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEIN 358
Query: 237 KAIQLLKQPDCVKVLI 252
           KA  LL +  C++ ++
Sbjct: 359 KAFDLLHEGTCLRCVL 374

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 131/256 (51%), Gaps = 10/256 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D  SR S+ G+ +YH    ST+S+Y V+    V ++DP   L     L CG  TG GA
Sbjct: 143 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPTGLGA 202
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
            W  A+VE                     +  GA++IIGID +  K ++ + FG+T+FIN
Sbjct: 203 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVTEFIN 262
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P  E  + I +++  +T G GVDY FEC G  S++  ALE                    
Sbjct: 263 PK-EHEQPIQQVIVDLTDG-GVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQE 320
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +  P  ++     GR  KGT FGG K++S +P L+DK   KE K+ + +TH++ L +I+
Sbjct: 321 ISTRPFQLVT----GRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLADIN 376
Query: 237 KAIQLLKQPDCVKVLI 252
           KA  L+   DC++V++
Sbjct: 377 KAFDLMHDGDCLRVVL 392

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 132/252 (52%), Gaps = 9/252 (3%)
Query: 6   SRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEA 65
           +R + +G+K+      ST+S+Y V++   V ++DPS  L     L CG +TGFGAA   A
Sbjct: 129 TRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTA 188
Query: 66  EVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEP 125
           +VE                        GA +II +D NP K EK + FG TDF+NP+D  
Sbjct: 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDH- 247
Query: 126 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMV---PL 182
           ++ IS+++  +T+G GVD+  EC G   ++  ALE+                  V   P+
Sbjct: 248 SEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPI 306
Query: 183 NVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL 242
            +IA    GRT KG+ FGG K K  +P ++    +K+ KL + +TH + LE ++ AI L+
Sbjct: 307 QLIA----GRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLM 362
Query: 243 KQPDCVKVLITI 254
           K   C++ ++++
Sbjct: 363 KHGKCIRTVLSL 374

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  137 bits (344), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 129/254 (50%), Gaps = 6/254 (2%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSR + +G+ +YH    S++S+Y V+    + RVD   +L     + CGF++G+GA
Sbjct: 127 MEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGA 186
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V                      ++ GA++II ID N  K  K +A G TD +N
Sbjct: 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLN 246
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTM- 179
           P  E +K + +++  +T G GVDY  +C G    L  A++ T              D M 
Sbjct: 247 P-RELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMT 304
Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           +P   + L   GR++ GT FGG K+   +P L+   KNK+F L  L+TH +  E I+ AI
Sbjct: 305 IPTVDVIL---GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAI 361
Query: 240 QLLKQPDCVKVLIT 253
            L+K+   ++ ++T
Sbjct: 362 DLMKEGKSIRTILT 375

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  136 bits (343), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 129/254 (50%), Gaps = 6/254 (2%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSR + +G+ +YH    S++S+Y V+    + RVD   +L     + CGF++G+GA
Sbjct: 127 MEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGA 186
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V                      ++ GA++II ID N  K  K +A G TD +N
Sbjct: 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLN 246
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTM- 179
           P  E +K + +++  +T G GVDY  +C G    L  A++ T              D M 
Sbjct: 247 P-RELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMT 304
Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           +P   + L   GR++ GT FGG K+   +P L+   KNK+F L  L+TH +  E I+ AI
Sbjct: 305 IPTVDVIL---GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAI 361
Query: 240 QLLKQPDCVKVLIT 253
            L+K+   ++ ++T
Sbjct: 362 DLMKEGKSIRTILT 375

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  133 bits (335), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 127/256 (49%), Gaps = 10/256 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSR + +G+ +YH F  ST+S+Y V+    + ++D   +L     L CGF+TG+GA
Sbjct: 130 MEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGA 189
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V                      +  GA++IIGID N  K  K +A G TD +N
Sbjct: 190 AINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLN 249
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D  +K I E++  +T G GVD+  +C G    +  AL+ T                  
Sbjct: 250 PRDL-HKPIQEVIIELTKG-GVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKG 307
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            T+ P  +I     GRT+ GT FGG K+   +P L+   KNK+F L  L+TH +  ++I 
Sbjct: 308 LTVFPEELII----GRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKIS 363
Query: 237 KAIQLLKQPDCVKVLI 252
           +A  L+ Q   ++ ++
Sbjct: 364 EAFDLMNQGKSIRTIL 379

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVAVTPDSQN 300
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 301 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 356
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+  + ++ ++T
Sbjct: 357 EGFDLLRSGESIRTILT 373

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 10/258 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + +G+ + H    ST+SEY V+    V ++DP   L     L CG +TG+GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A++E                     ++ GA++IIG+D N  K  + + FG T+ IN
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT----XXXXXXXXXXXXXX 176
           P D  +K I E++  +T G GVDY FEC G   ++  ALE                    
Sbjct: 243 PQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 300
Query: 177 DTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
               P  ++     GRT KGT FGG K+   +P L+ +  +K+ K+ + +TH++  +EI+
Sbjct: 301 IATRPFQLVT----GRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEIN 356
Query: 237 KAIQLLKQPDCVKVLITI 254
           KA +L+     ++ ++ I
Sbjct: 357 KAFELMHSGKSIRTVVKI 374

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 10/258 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + +G+ + H    ST+SEY V+    V ++DP   L     L CG +TG+GA
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 181
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A++E                     ++ GA++IIG+D N  K  + + FG T+ IN
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN 241
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT----XXXXXXXXXXXXXX 176
           P D  +K I E++  +T G GVDY FEC G   ++  ALE                    
Sbjct: 242 PQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 299
Query: 177 DTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
               P  ++     GRT KGT FGG K+   +P L+ +  +K+ K+ + +TH++  +EI+
Sbjct: 300 IATRPFQLVT----GRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEIN 355
Query: 237 KAIQLLKQPDCVKVLITI 254
           KA +L+     ++ ++ I
Sbjct: 356 KAFELMHSGKSIRTVVKI 373

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 10/258 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + +G+ + H    ST+SEY V+    V ++DP   L     L CG +TG+GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A++E                     ++ GA++IIG+D N  K  + + FG T+ IN
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT----XXXXXXXXXXXXXX 176
           P D  +K I E++  +T G GVDY FEC G   ++  ALE                    
Sbjct: 243 PQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 300
Query: 177 DTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
               P  ++     GRT KGT FGG K+   +P L+ +  +K+ K+ + +TH++  +EI+
Sbjct: 301 IATRPFQLVT----GRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEIN 356
Query: 237 KAIQLLKQPDCVKVLITI 254
           KA +L+     ++ ++ I
Sbjct: 357 KAFELMHSGKSIRTVVKI 374

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 10/258 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + +G+ + H    ST+SEY V+    V ++DP   L     L CG +TG+GA
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 181
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A++E                     ++ GA++IIG+D N  K  + + FG T+ IN
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN 241
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT----XXXXXXXXXXXXXX 176
           P D  +K I E++  +T G GVDY FEC G   ++  ALE                    
Sbjct: 242 PQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 299
Query: 177 DTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
               P  ++     GRT KGT FGG K+   +P L+ +  +K+ K+ + +TH++  +EI+
Sbjct: 300 IATRPFQLVT----GRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEIN 355
Query: 237 KAIQLLKQPDCVKVLITI 254
           KA +L+     ++ ++ I
Sbjct: 356 KAFELMHSGKSIRTVVKI 373

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN 300
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 301 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 356
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+  + ++ ++T
Sbjct: 357 EGFDLLRSGESIRTILT 373

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVITGVPPDSQN 300
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 301 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 356
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+  + ++ ++T
Sbjct: 357 EGFDLLRSGESIRTILT 373

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVISGVPPDSQN 300
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 301 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 356
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+  + ++ ++T
Sbjct: 357 EGFDLLRSGESIRTILT 373

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 129/254 (50%), Gaps = 4/254 (1%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTM- 179
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D+  
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN 300
Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           + +N + L   GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I++  
Sbjct: 301 LSMNPMLLL-SGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGF 359
Query: 240 QLLKQPDCVKVLIT 253
            LL+  + ++ ++T
Sbjct: 360 DLLRSGESIRTILT 373

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN 300
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 301 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 356
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+  + ++ ++T
Sbjct: 357 EGFDLLRSGESIRTILT 373

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN 300
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 301 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 356
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+  + ++ ++T
Sbjct: 357 EGFDLLRSGESIRTILT 373

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN 300
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 301 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 356
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+  + ++ ++T
Sbjct: 357 EGFDLLRSGESIRTILT 373

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 129/254 (50%), Gaps = 4/254 (1%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTM- 179
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D+  
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN 300
Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           + +N + L   GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I++  
Sbjct: 301 LSMNPMLLL-SGRTWKGCIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGF 359
Query: 240 QLLKQPDCVKVLIT 253
            LL+  + ++ ++T
Sbjct: 360 DLLRSGESIRTILT 373

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 130/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  +  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATECVN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN 300
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 301 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 356
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+  + ++ ++T
Sbjct: 357 EGFDLLRSGESIRTILT 373

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 122 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGS 181
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 182 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 241
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 242 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQN 299
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 300 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 355
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+    ++ ++T
Sbjct: 356 EGFDLLRSGKSIRTILT 372

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  130 bits (327), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 10/257 (3%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 122 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGS 181
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +                    +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 182 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 241
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXD--- 177
           P D   K I E++  +++G GVD+ FE  G    +  AL                 D   
Sbjct: 242 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQN 299
Query: 178 -TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID 236
            +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I+
Sbjct: 300 LSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKIN 355
Query: 237 KAIQLLKQPDCVKVLIT 253
           +   LL+    ++ ++T
Sbjct: 356 EGFDLLRSGKSIRTILT 372

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 126/260 (48%), Gaps = 16/260 (6%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGT R + RG+ ++H    ST+S+Y V+D N V ++D +  L     + CGF+TG+G+
Sbjct: 123 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V                      +  GAA+II +D N  K  K +  G T+ IN
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EALETTXXXXXXXXXXX 173
           P D   K I E++K +T G GVD+ FE  G     + SLL   EA  T+           
Sbjct: 243 PQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQN 300
Query: 174 XXXDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLE 233
              + M+ L        GRT KG  +GG K+K  +P L+     K+F L  L+TH +  E
Sbjct: 301 LSINPMLLLT-------GRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFE 353
Query: 234 EIDKAIQLLKQPDCVKVLIT 253
           +I++   LL     ++ ++T
Sbjct: 354 KINEGFDLLHSGKSIRTVLT 373

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 126/260 (48%), Gaps = 16/260 (6%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGT R + RG+ ++H    ST+S+Y V+D N V ++D +  L     + CGF+TG+G+
Sbjct: 123 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V                      +  GAA+II +D N  K  K +  G T+ IN
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EALETTXXXXXXXXXXX 173
           P D   K I E++K +T G GVD+ FE  G     + SLL   EA  T+           
Sbjct: 243 PQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQN 300
Query: 174 XXXDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLE 233
              + M+ L        GRT KG  +GG K+K  +P L+     K+F L  L+TH +  E
Sbjct: 301 LSINPMLLLT-------GRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFE 353
Query: 234 EIDKAIQLLKQPDCVKVLIT 253
           +I++   LL     ++ ++T
Sbjct: 354 KINEGFDLLHSGKSIRTVLT 373

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 126/260 (48%), Gaps = 16/260 (6%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGT R + RG+ ++H    ST+S+Y V+D N V ++D +  L     + CGF+TG+G+
Sbjct: 123 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V                      +  GAA+II +D N  K  K +  G T+ IN
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EALETTXXXXXXXXXXX 173
           P D   K I E++K +T G GVD+ FE  G     + SLL   EA  T+           
Sbjct: 243 PQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQN 300
Query: 174 XXXDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLE 233
              + M+ L        GRT KG  +GG K+K  +P L+     K+F L  L+TH +  E
Sbjct: 301 LSINPMLLLT-------GRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFE 353
Query: 234 EIDKAIQLLKQPDCVKVLIT 253
           +I++   LL     ++ ++T
Sbjct: 354 KINEGFDLLHSGKSIRTVLT 373

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 127/253 (50%), Gaps = 2/253 (0%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGT+R + +G+ ++H  + ST++EY V+D + V ++D +        + CGF+TG+GA
Sbjct: 122 LADGTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGA 181
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K  +V+                     +  GA++IIGID N  K EK  A G T+ I+
Sbjct: 182 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECIS 241
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMV 180
           P D   K ISE++  +T G  V Y FE  G    + +AL +                  +
Sbjct: 242 PKDS-TKPISEVLSEMT-GNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKM 299
Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
                 L   GRT KG  FGG+K++ D+P L+ +   K+F L QL+TH +  ++I +  +
Sbjct: 300 LTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFE 359
Query: 241 LLKQPDCVKVLIT 253
           LL     ++ ++T
Sbjct: 360 LLNSGQSIRTVLT 372

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 127/253 (50%), Gaps = 2/253 (0%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGT+R + +G+ ++H  + ST++EY V+D + V ++D +        + CGF+TG+GA
Sbjct: 122 LADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGA 181
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K  +V+                     +  GA++IIGID N  K EK  A G T+ I+
Sbjct: 182 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECIS 241
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMV 180
           P D   K ISE++  +T G  V Y FE  G    + +AL +                  +
Sbjct: 242 PKDS-TKPISEVLSEMT-GNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKM 299
Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
                 L   GRT KG  FGG+K++ D+P L+ +   K+F L QL+TH +  ++I +  +
Sbjct: 300 LTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFE 359
Query: 241 LLKQPDCVKVLIT 253
           LL     ++ ++T
Sbjct: 360 LLNSGQSIRTVLT 372

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 125/260 (48%), Gaps = 16/260 (6%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGT R + RG+ ++H    ST+S+Y V+D N V ++D +  L     + CGF+TG+G+
Sbjct: 123 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V                      +  GAA+II +D N  K  K +  G T+ IN
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EALETTXXXXXXXXXXX 173
           P D   K I E++K +T G GVD+ FE  G     + SLL   EA  T+           
Sbjct: 243 PQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQN 300
Query: 174 XXXDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLE 233
              + M+ L        GRT KG  +GG K+K  +P L+     K+F L  L+TH +  E
Sbjct: 301 LSINPMLLLT-------GRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFE 353
Query: 234 EIDKAIQLLKQPDCVKVLIT 253
           +I++   LL     +  ++T
Sbjct: 354 KINEGFDLLHSGKSICTVLT 373

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 127/260 (48%), Gaps = 16/260 (6%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGT R +  G+ ++H    ST+S+Y V+D N V ++D +  L     + CGF+TG+G+
Sbjct: 123 LQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V                      +  GAA+II +D N  K  K +  G T+ IN
Sbjct: 183 AVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EALETTXXXXXXXXXXX 173
           P D   K I E++K +T G GVD+ FE  G     + SLL   EA  T+           
Sbjct: 243 PQDY-KKPIQEVLKEMTDG-GVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDSQN 300
Query: 174 XXXDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLE 233
              + M+ L        GRT KG  FGG K+K  +P L+     K+F L  L+T+ +  E
Sbjct: 301 LSINPMLLLT-------GRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNVLPFE 353
Query: 234 EIDKAIQLLKQPDCVKVLIT 253
           +I++   LL+    ++ ++T
Sbjct: 354 KINEGFDLLRSGKSIRTVLT 373

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 124/259 (47%), Gaps = 16/259 (6%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           + DGTSR + R + ++H    ST+S+Y V+D N V ++D +  L     + CGF+TG+G+
Sbjct: 123 LQDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V                      +  GAA+II +D N  K  K +  G T+ IN
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EALETTXXXXXXXXXXX 173
           P D   K I E++K +T G GVD+ FE  G     + SLL   EA  T+           
Sbjct: 243 PQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQN 300
Query: 174 XXXDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLE 233
              + M+ L        GRT KG   GG K+K  +P L+     K+F L  L+TH +  E
Sbjct: 301 LSMNPMLLLT-------GRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFE 353
Query: 234 EIDKAIQLLKQPDCVKVLI 252
           +I++   LL     ++ ++
Sbjct: 354 KINEGFDLLHSGKSIRTIL 372

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 122/252 (48%), Gaps = 4/252 (1%)
Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSR + RG+ +Y++   ST++EY V+    V ++DP   L  +  + CGF TG+GA
Sbjct: 124 MADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPL-ESCLIGCGFATGYGA 182
Query: 61  AWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V                      +  GA++IIG+  +  K  K    G T+ +N
Sbjct: 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLN 242
Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMV 180
           P D  +K I E++   T+G GVDY  EC G    +  AL++T                  
Sbjct: 243 PKDY-DKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNER 300
Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
                 L   GR+LKG+ FGG K + ++  L+D    K+  ++ L++  + L++I+KA +
Sbjct: 301 LPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFE 359
Query: 241 LLKQPDCVKVLI 252
           LL     V+ ++
Sbjct: 360 LLSSGQGVRSIM 371

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 7/223 (3%)
Query: 17  HIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKXXXXXXX 76
           H F+ S+++ Y +   N  V+V   + +     L CG  TG GA     +V         
Sbjct: 138 HFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTW 197
Query: 77  XXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD-DEPNKSISELVKG 135
                        ++ GA+ II +D    + E  +  G T  IN    +P  +I E+  G
Sbjct: 198 GAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDG 257
Query: 136 ITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMVPLNVIALACGGRTLK 195
                GV++  E TG P +L + ++                 T    +V  L  GG+T+ 
Sbjct: 258 -----GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTIL 312
Query: 196 GTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKA 238
           G   G    K  +P L+   +  +F   QL+  +   +EI++A
Sbjct: 313 GVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKFYA-FDEINQA 354

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 13/243 (5%)
Query: 19  FSCSTWSEYM-VIDANYVVRVDP-SIDLSHASFLSCGFTTGFGAAWKEAEVEKXXXXXXX 76
           F    + EY  V DA+  + + P  + L +A  ++   TTGF  A + A++E        
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIELGATVAVL 173
Query: 77  XXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI 136
                        +++GA +II +   P   +  + +G TD +N  D P   I   +  +
Sbjct: 174 GIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGP---IESQIMNL 230
Query: 137 THGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMVPLNVIALACG--GRTL 194
           T G GVD      G   +++ A++                  ++P+  +   CG   +T+
Sbjct: 231 TEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTI 290
Query: 195 KGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTH-HVKLEEIDKAIQLLKQ--PDCVKVL 251
           KG    G + ++++  L D        L +L+TH +   + I++A+ L+K    D +K +
Sbjct: 291 KGGLCPGGRLRAEM--LRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAV 348
Query: 252 ITI 254
           + +
Sbjct: 349 VIL 351

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 96/247 (38%), Gaps = 12/247 (4%)
Query: 11  RGQKLY-HIFSCSTWSEYMVIDANY-VVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVE 68
           RG   Y H+  C  +S ++V+D    V++V    DL   +   C   T + A  +  E  
Sbjct: 137 RGCSEYPHLRGC--YSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESF 194
Query: 69  KXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS 128
                                R  GA  +I I  +P + +  E  G    +N  +   + 
Sbjct: 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEE 254
Query: 129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMVPLNVIALA 188
             + +  ITHG G D+  E TG    L E  E                   VP  V    
Sbjct: 255 RRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWL 314
Query: 189 CGGRTLKGTTFGGI---KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP 245
                LK  TF GI    T   +  +    +N +  L +L+TH + L+E +KA++L++  
Sbjct: 315 ----VLKNATFKGIWVSDTSHFVKTVSITSRNYQL-LSKLITHRLPLKEANKALELMESR 369
Query: 246 DCVKVLI 252
           + +KV++
Sbjct: 370 EALKVIL 376

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 13/243 (5%)
Query: 19  FSCSTWSEYM-VIDANYVVRVDP-SIDLSHASFLSCGFTTGFGAAWKEAEVEKXXXXXXX 76
           F    + EY  V DA+  + + P  + L +A  ++   TTGF  A + A++E        
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVI 173
Query: 77  XXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI 136
                        +++GA +IIG+   P   E  + +G TD +N     N  I + V  +
Sbjct: 174 GIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIEDQVMKL 230
Query: 137 THGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMVPLNVIALACG--GRTL 194
           T+G GVD      G    LS+A++                   + +  +   CG   +T+
Sbjct: 231 TNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTI 290
Query: 195 KGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTH-HVKLEEIDKAIQLLKQ--PDCVKVL 251
           KG    G + +++   L D        L +L+TH +   + I++A+ L+K    D +K +
Sbjct: 291 KGGLCPGGRLRAER--LRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAV 348
Query: 252 ITI 254
           + +
Sbjct: 349 VIL 351

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 13/243 (5%)
Query: 19  FSCSTWSEYM-VIDANYVVRVDP-SIDLSHASFLSCGFTTGFGAAWKEAEVEKXXXXXXX 76
           F    + EY  V DA+  + + P  + L +A  ++   TTGF  A + A+++        
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVI 173
Query: 77  XXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI 136
                        +++GA +IIG+   P   E  + +G TD +N     N  I + V  +
Sbjct: 174 GIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIVDQVMKL 230
Query: 137 THGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMVPLNVIALACG--GRTL 194
           T+G GVD      G    LS+A+                    + +  +   CG   +T+
Sbjct: 231 TNGKGVDRVIMAGGGSETLSQAVSMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTI 290
Query: 195 KGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTH-HVKLEEIDKAIQLLKQ--PDCVKVL 251
           KG    G + ++++  L D        L +L+TH +   + I++A+ L+K    D +K +
Sbjct: 291 KGGLCPGGRLRAEM--LRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAV 348
Query: 252 ITI 254
           + +
Sbjct: 349 VIL 351

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 13/243 (5%)
Query: 19  FSCSTWSEYM-VIDANYVVRVDP-SIDLSHASFLSCGFTTGFGAAWKEAEVEKXXXXXXX 76
           F    + EY  V DA+  + + P  + L +A  ++   TTGF  A + A+++        
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVI 173
Query: 77  XXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI 136
                        +++GA +IIG+   P   E  + +G TD +N     N  I + V  +
Sbjct: 174 GIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIVDQVMKL 230
Query: 137 THGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDTMVPLNVIALACG--GRTL 194
           T+G GVD      G    LS+A+                    + +  +   CG   +T+
Sbjct: 231 TNGKGVDRVIMAGGGSETLSQAVSMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTI 290
Query: 195 KGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTH-HVKLEEIDKAIQLLKQ--PDCVKVL 251
           KG    G + ++++  L D        L +L+TH +   + I++A+ L+K    D +K +
Sbjct: 291 KGGLCPGGRLRAEM--LRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAV 348
Query: 252 ITI 254
           + +
Sbjct: 349 VIL 351

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 11/218 (5%)
Query: 42  IDLSHASFLSCGFTTGFGAAWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGID 101
           I L  A  +    TTGF  A + A++E                     +++GA +II + 
Sbjct: 140 IPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVG 198
Query: 102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 161
             P   +  + +G TD +N  D P   I   +  +T G GVD      G   +++ A++ 
Sbjct: 199 SRPVCVDAAKYYGATDIVNYKDGP---IESQIMNLTEGKGVDAAIIAGGNADIMATAVKI 255
Query: 162 TXXXXXXXXXXXXXXDTMVPLNVIALACG--GRTLKGTTFGGIKTKSDLPILLDKCKNKE 219
                            ++P+  +   CG   +T+KG    G + + +   L+D    K 
Sbjct: 256 VKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMER--LIDLVFYKR 313
Query: 220 FKLHQLLTHHVK-LEEIDKAIQLLK-QP-DCVKVLITI 254
               +L+TH  +  + I+KA  L+K +P D +K ++ +
Sbjct: 314 VDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL 351

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 11/218 (5%)
Query: 42  IDLSHASFLSCGFTTGFGAAWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGID 101
           I L  A  +    TTGF  A + A++E                     +++GA +IIG+ 
Sbjct: 140 IPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 198
Query: 102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 161
             P   E  + +G TD +N     N  I + V  +T+G GVD      G    LS+A++ 
Sbjct: 199 SRPICVEAAKFYGATDILN---YKNGHIVDQVMKLTNGKGVDRVIMAGGGSETLSQAVKM 255
Query: 162 TXXXXXXXXXXXXXXDTMVPLNVIALACG--GRTLKGTTFGGIKTKSDLPILLDKCKNKE 219
                             + +  +   CG   +T+KG    G + + +   L+D    K 
Sbjct: 256 VKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRMER--LIDLVFYKR 313
Query: 220 FKLHQLLTHHVK-LEEIDKAIQLLK-QP-DCVKVLITI 254
               +L+TH  +  + I+KA  L+K +P D +K ++ +
Sbjct: 314 VDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL 351

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 11/218 (5%)
Query: 42  IDLSHASFLSCGFTTGFGAAWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGID 101
           I L  A  +    TTGF  A + A+++                     +++GA +IIG+ 
Sbjct: 140 IPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 198
Query: 102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 161
             P   E  + +G TD +N     N  I + V  +T+G GVD      G    LS+A+  
Sbjct: 199 SRPICVEAAKFYGATDILN---YKNGHIVDQVMKLTNGKGVDRVIMAGGGSETLSQAVSM 255
Query: 162 TXXXXXXXXXXXXXXDTMVPLNVIALACG--GRTLKGTTFGGIKTKSDLPILLDKCKNKE 219
                             + +  +   CG   +T+KG    G + + +   L+D    K 
Sbjct: 256 VKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRMER--LIDLVFYKR 313
Query: 220 FKLHQLLTHHVK-LEEIDKAIQLLK-QP-DCVKVLITI 254
               +L+TH  +  + I+KA  L+K +P D +K ++ +
Sbjct: 314 VDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL 351

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 11/218 (5%)
Query: 42  IDLSHASFLSCGFTTGFGAAWKEAEVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGID 101
           I L  A  +    TTGF  A + A++E                     +++GA +II + 
Sbjct: 140 IPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVG 198
Query: 102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 161
             P   +  + +G TD +N  D P   I   +  +T G GVD      G   +++ A++ 
Sbjct: 199 SRPVCVDAAKYYGATDIVNYKDGP---IESQIMNLTEGKGVDAAIIAGGNADIMATAVKI 255
Query: 162 TXXXXXXXXXXXXXXDTMVPLNVIALACG--GRTLKGTTFGGIKTKSDLPILLDKCKNKE 219
                            ++ +  +   CG   +T+KG    G + + +   L+D    K 
Sbjct: 256 VKPGGTIANVNYFGEGEVLDVPRLEWGCGMAHKTIKGGLCPGGRLRMER--LIDLVFYKR 313
Query: 220 FKLHQLLTHHVK-LEEIDKAIQLLK-QP-DCVKVLITI 254
               +L+TH  +  + I+KA  L+K +P D +K ++ +
Sbjct: 314 VDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL 351

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-107
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-106
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-106
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-105
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-102
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	6e-87
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	2e-75
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	4e-42
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	8e-41
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	1e-40
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	1e-39
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	4e-38
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	8e-38
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-37
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	7e-37
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-34
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	5e-34
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-31
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-31
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-30
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	8e-30
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	5e-29
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-28
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	5e-28
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	1e-21
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	5e-21
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	6e-19
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	7e-19
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	3e-15
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	3e-15
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	5e-15
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	4e-14
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	2e-12
3gms_A	340	Putative NADPH:quinone reductase; structural genom	1e-11
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-11
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	2e-11
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	3e-11
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	4e-11
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-10
4eye_A	342	Probable oxidoreductase; structural genomics, niai	4e-10
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-09
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	7e-09
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-06
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	4e-06
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	4e-06
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	5e-06
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	9e-06
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-05
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	4e-05
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	6e-05

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  312 bits (802), Expect = e-107
 Identities = 94/254 (37%), Positives = 147/254 (57%), Gaps = 4/254 (1%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     + CGF+TG+G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A K A+V +GS+ AV GLG VGL  + G +  GAA+IIG+D N  K  K +  G T+ +N
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTM 179
           P D   K I E++  +++G GVD+ FE  G    +  AL   +   G  +++GV      
Sbjct: 243 PQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN 300

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           + +N + L   GRT KG  FGG K+K  +P L+     K+F L  L+TH +  E+I++  
Sbjct: 301 LSMNPMLLLS-GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGF 359

Query: 240 QLLKQPDCVKVLIT 253
            LL+  + ++ ++T
Sbjct: 360 DLLRSGESIRTILT 373

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  312 bits (801), Expect = e-106
 Identities = 99/254 (38%), Positives = 150/254 (59%), Gaps = 3/254 (1%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M    +R + +G+K+      ST+S+Y V++   V ++DPS  L     L CG +TGFGA
Sbjct: 124 MSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGA 183

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+VE GS+ AV GLG VGL AV G    GA +II +D NP K EK + FG TDF+N
Sbjct: 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVN 243

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P+D  ++ IS+++  +T+G GVD+  EC G   ++  ALE+   G G  +++G      V
Sbjct: 244 PNDH-SEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDV 301

Query: 181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ 240
               I L   GRT KG+ FGG K K  +P ++    +K+ KL + +TH + LE ++ AI 
Sbjct: 302 ATRPIQLIA-GRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAID 360

Query: 241 LLKQPDCVKVLITI 254
           L+K   C++ ++++
Sbjct: 361 LMKHGKCIRTVLSL 374

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  312 bits (801), Expect = e-106
 Identities = 98/255 (38%), Positives = 147/255 (57%), Gaps = 4/255 (1%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + +G+ + H    ST+SEY V+    V ++DP   L     L CG +TG+GA
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 181

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A++E GS  AV GLG VGL  + G ++ GA++IIG+D N  K  + + FG T+ IN
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN 241

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTM 179
           P D  +K I E++  +T G GVDY FEC G   ++  ALE    G G  +V+GV      
Sbjct: 242 PQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 299

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           +      L   GRT KGT FGG K+   +P L+ +  +K+ K+ + +TH++  +EI+KA 
Sbjct: 300 IATRPFQLVT-GRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAF 358

Query: 240 QLLKQPDCVKVLITI 254
           +L+     ++ ++ I
Sbjct: 359 ELMHSGKSIRTVVKI 373

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  308 bits (792), Expect = e-105
 Identities = 98/255 (38%), Positives = 150/255 (58%), Gaps = 8/255 (3%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSR + +G+ +YH    S++S+Y V+    + RVD   +L     + CGF++G+GA
Sbjct: 127 MEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGA 186

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V  GS+ AV GLG VGL A+ G ++ GA++II ID N  K  K +A G TD +N
Sbjct: 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLN 246

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV 180
           P +  +K + +++  +T G GVDY  +C G    L  A++ T +G G   V+G  VD M 
Sbjct: 247 PREL-DKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMT 304

Query: 181 --PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKA 238
              ++VI     GR++ GT FGG K+   +P L+   KNK+F L  L+TH +  E I+ A
Sbjct: 305 IPTVDVIL----GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDA 360

Query: 239 IQLLKQPDCVKVLIT 253
           I L+K+   ++ ++T
Sbjct: 361 IDLMKEGKSIRTILT 375

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  301 bits (773), Expect = e-102
 Identities = 92/254 (36%), Positives = 148/254 (58%), Gaps = 6/254 (2%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSR + RG+ +Y++   ST++EY V+    V ++DP   L  +  + CGF TG+GA
Sbjct: 124 MADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPL-ESCLIGCGFATGYGA 182

Query: 61  AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 120
           A   A+V  GS+ AV GLG VG  A+ G +  GA++IIG+  +  K  K    G T+ +N
Sbjct: 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLN 242

Query: 121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTM 179
           P D  +K I E++   T+G GVDY  EC G    +  AL++T  G G  +V+G+   +  
Sbjct: 243 PKDY-DKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNER 300

Query: 180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAI 239
           +PL+ + L   GR+LKG+ FGG K + ++  L+D    K+  ++ L++  + L++I+KA 
Sbjct: 301 LPLDPLLLLT-GRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINKAF 358

Query: 240 QLLKQPDCVKVLIT 253
           +LL     V+ ++ 
Sbjct: 359 ELLSSGQGVRSIMI 372

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  262 bits (671), Expect = 6e-87
 Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 9/257 (3%)

Query: 1   MLDGTSRMSVRGQKLY--HIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGF 58
             +G   +    Q +   H F+ S+++ Y +   N  V+V   + +     L CG  TG 
Sbjct: 120 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA 179

Query: 59  GAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF 118
           GA     +V   SS    G G VGL A+  A++ GA+ II +D    + E  +  G T  
Sbjct: 180 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV 239

Query: 119 INPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG-VD 177
           IN   +        +K IT G GV++  E TG P +L + ++   +  GK+ V+G   + 
Sbjct: 240 INSKTQD---PVAAIKEITDG-GVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLG 294

Query: 178 TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDK 237
           T    +V  L  GG+T+ G   G    K  +P L+   +  +F   QL+      +EI++
Sbjct: 295 TTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVK-FYAFDEINQ 353

Query: 238 AIQLLKQPDCVKVLITI 254
           A    ++   +K +I I
Sbjct: 354 AAIDSRKGITLKPIIKI 370

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  232 bits (595), Expect = 2e-75
 Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 10/246 (4%)

Query: 11  RGQKLYHIFSCSTWSEYMVID-ANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEK 69
           RG   Y       +S ++V+D    V++V    DL   +   C   T + A  +  E   
Sbjct: 137 RGCSEYPHLR-GCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFA 195

Query: 70  GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSI 129
           G +V + G G +GL  V  AR  GA  +I I  +P + +  E  G    +N  +   +  
Sbjct: 196 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEER 255

Query: 130 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIALA 188
            + +  ITHG G D+  E TG    L E  E  + G G   V GV      VP  V    
Sbjct: 256 RKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYE-- 312

Query: 189 CGGRTLKGTTFGGI--KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD 246
                LK  TF GI     S     +         L +L+TH + L+E +KA++L++  +
Sbjct: 313 --WLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESRE 370

Query: 247 CVKVLI 252
            +KV++
Sbjct: 371 ALKVIL 376

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  145 bits (369), Expect = 4e-42
 Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 15/237 (6%)

Query: 26  EYM-VIDANY-VVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGL 83
           E+  V DA+  +  +   I L  A  +    TTGF  A + A ++ G +V V+G+G VGL
Sbjct: 122 EFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGL 180

Query: 84  GAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD 143
            +V GA   GA +I  +       +    +G TD IN  +     I E +   T G GVD
Sbjct: 181 MSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNG---DIVEQILKATDGKGVD 237

Query: 144 YCFECTGVPSLLSEALETTKVGKGKVIVIGV---GVDTMVPLNVIALACGGRTLKGTTFG 200
                 G     ++A++  K G   +  +     G +  +P +   +  G + + G    
Sbjct: 238 KVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCP 296

Query: 201 GIKTKSDLPILLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLL--KQPDCVKVLITI 254
           G   +  +  L+D    K     +L+TH  +  + I+KA  L+  K  D +K ++ +
Sbjct: 297 G--GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL 351

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  142 bits (361), Expect = 8e-41
 Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 19/235 (8%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
           +EY+++       +  ++D  H +F   L+C            + ++ GS+VA+LG G +
Sbjct: 140 AEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL-----HGVDLSGIKAGSTVAILGGGVI 194

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT--HG 139
           GL  V  AR+ GA  +I   +   K+   E  G T  ++P       + E + G      
Sbjct: 195 GLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAG---DVVEAIAGPVGLVP 251

Query: 140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV-DTMVPLNVIALACGGRTLKGTT 198
            GVD   EC GV   + ++    K G G V+++GV      V +    +      + G +
Sbjct: 252 GGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRVLG-S 309

Query: 199 FGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 253
           F             D       ++ ++++  + L+E    I        VKVL+ 
Sbjct: 310 FIN---PFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVI 361

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  141 bits (359), Expect = 1e-40
 Identities = 42/238 (17%), Positives = 89/238 (37%), Gaps = 17/238 (7%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLG 79
            ++EY+V+    V  +   + +   +F   ++ G       A+  A+  +  +V ++G G
Sbjct: 116 GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL-----HAFHLAQGCENKNVIIIGAG 170

Query: 80  TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG 139
           T+GL A+  A   GA  +  ID +  K    ++FG     N  +    S  ++   +   
Sbjct: 171 TIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEM---SAPQMQSVLREL 227

Query: 140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--TMVPLNVIALACGGRTLKGT 197
                  E  GVP  +  A+E       ++ ++G       +       +     T+ G+
Sbjct: 228 RFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGS 286

Query: 198 --TFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL-KQPDCVKVLI 252
              +       +          ++  L  L+ H    E   +A++ + +     KVL+
Sbjct: 287 WMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLL 344

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  139 bits (353), Expect = 1e-39
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 13/223 (5%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSC-GFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
           + +EYM++D+   +     +D   A+ L+  G T     +     +  GS+  V+G+G +
Sbjct: 124 SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGL 183

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           G   +   R   AA++I +D +  +       G    +          ++ ++ +T G G
Sbjct: 184 GHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGA----ADAIRELTGGQG 239

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG 201
               F+  G  S +  A +   V  G + V+G+            +   G ++    +G 
Sbjct: 240 ATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGAH-AKVGFFMIPFGASVVTPYWG- 296

Query: 202 IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
             T+S+L  ++   +     +H   T    L+E   A + L++
Sbjct: 297 --TRSELMEVVALARAGRLDIH---TETFTLDEGPAAYRRLRE 334

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  135 bits (342), Expect = 4e-38
 Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 18/235 (7%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
           +EY V+ A  + +   SI   +A+    L     T        A    G SV + G G +
Sbjct: 126 AEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDT------VLAGPISGKSVLITGAGPL 179

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           GL  +  A+  GA  +I  + + +++E  +  G    INP +E    + + V  IT G G
Sbjct: 180 GLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEE---DVVKEVMDITDGNG 236

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV-DTMVPLNVIALACGGRTLKGTTFG 200
           VD   E +G P  L + L+      G+V ++G+      +  N + +     T+ G T  
Sbjct: 237 VDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPGKVTIDFNNLIIF-KALTIYGIT-- 292

Query: 201 GIKTKSDLPILLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLKQPDCVKVLITI 254
           G         +    ++ +  L  ++TH  K  ++ ++A +L++     KV+  +
Sbjct: 293 GRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFML 347

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  134 bits (340), Expect = 8e-38
 Identities = 53/231 (22%), Positives = 86/231 (37%), Gaps = 16/231 (6%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
           +EY+V+ A         +    A+                        G SV + G G +
Sbjct: 122 AEYVVVPAENAWVNPKDLPFEVAAILEPFGNAV-----HTVYAGSGVSGKSVLITGAGPI 176

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           GL A    R  GA  I+  D NP++      +     +NP +E    + E+V+ +T G G
Sbjct: 177 GLMAAMVVRASGAGPILVSDPNPYRLAFARPYA-DRLVNPLEE---DLLEVVRRVT-GSG 231

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG 201
           V+   E +G  + + + L     G G+  ++G+  D +       L   G T  G    G
Sbjct: 232 VEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSDPIRFDLAGELVMRGITAFGIA--G 288

Query: 202 IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 252
            +             +    L  LLTH + L    +A  LL     VKV++
Sbjct: 289 RRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVIL 339

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  134 bits (340), Expect = 2e-37
 Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 23/243 (9%)

Query: 25  SEYMVIDANYVVRV-------DPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVA 74
           +EY+ +DA Y   +       +        S     S  +        +   +  G +V 
Sbjct: 162 AEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAY---NAVIVRGGGIRPGDNVV 218

Query: 75  VLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK 134
           +LG G +GL AV   +  GA+K+I  + +  ++   +  G    I+P  E   +  E V 
Sbjct: 219 ILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKE---NFVEAVL 275

Query: 135 GITHGMGVDYCFECTGVPSLLSEALETTKVGK--GKVIVIGVGV-DTMVPLNVIALACGG 191
             T+G+G     E TGVP L+   +E            V  V   D  +PL         
Sbjct: 276 DYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRR 335

Query: 192 RTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ-PDCVKV 250
             + G+   G       P ++    +    + ++++  V +EEI + I+ L+     VKV
Sbjct: 336 AQIVGSQ--GHSGHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTDKSLVKV 392

Query: 251 LIT 253
            + 
Sbjct: 393 TML 395

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  132 bits (334), Expect = 7e-37
 Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 19/235 (8%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLG 79
               +   +A +  ++  ++     +    LS G       A +   V  G  V V G G
Sbjct: 127 NLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI-----HACRRGGVTLGHKVLVCGAG 181

Query: 80  TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG 139
            +G+  +  A+  GAA+++  D +  +  K +  G    +    E   S  E+ + +   
Sbjct: 182 PIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE---SPQEIARKVEGQ 238

Query: 140 MG--VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT 197
           +G   +   ECTG  + +   +  T+ G G ++++G+G + M  + ++  A     +KG 
Sbjct: 239 LGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSE-MTTVPLLHAAIREVDIKG- 295

Query: 198 TFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 252
            F      +  P+ +    +K   +  L+TH   LE+  +A +  K+   +K+++
Sbjct: 296 VFRY---CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIML 347

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  126 bits (318), Expect = 1e-34
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 17/226 (7%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSH---ASFLSCGFTTGFGAAWK-EAEVEKGSSVAVLGL 78
            ++E+M      V+++   I        + L+    T + A  K    +  G+ VA++G+
Sbjct: 136 GFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV 195

Query: 79  GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH 138
           G +G  AV   ++   A +I +D    K +  E  G    ++   +P     + V  +T 
Sbjct: 196 GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDP----VKQVMELTR 251

Query: 139 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTT 198
           G GV+   +  G  + +           G++I++G G +  +    I +     + +G+ 
Sbjct: 252 GRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGGE--LRFPTIRVISSEVSFEGSL 308

Query: 199 FGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
            G      +L  L+      + ++        KL+EI+  ++ L++
Sbjct: 309 VG---NYVELHELVTLALQGKVRVE---VDIHKLDEINDVLERLEK 348

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  124 bits (314), Expect = 5e-34
 Identities = 50/241 (20%), Positives = 95/241 (39%), Gaps = 28/241 (11%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLG 79
               Y+   A +  ++  ++   + +    LS        A  + A V  G  V + G G
Sbjct: 136 LLRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVAL-----AGLQRAGVRLGDPVLICGAG 189

Query: 80  TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN-KSISELVKGITH 138
            +GL  +  A+  GA  ++  D +  + +  +        +  +  + +  ++ +     
Sbjct: 190 PIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFG 249

Query: 139 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT- 197
           G+      ECTGV S ++ A+   K G GKV VIGVG +  + +  +  +     L+   
Sbjct: 250 GIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGKN-EIQIPFMRASVREVDLQFQY 307

Query: 198 ----TFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLK--QPDCVKVL 251
               T+         P  +   +N    L +L+TH   LE+  KA +     +   +KV 
Sbjct: 308 RYCNTW---------PRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQ 358

Query: 252 I 252
           I
Sbjct: 359 I 359

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  118 bits (298), Expect = 1e-31
 Identities = 54/239 (22%), Positives = 110/239 (46%), Gaps = 20/239 (8%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEKGSSVAVLGLG 79
             + Y V  A++  ++  ++ L   +    LS G       A + A V+ G++V V+G G
Sbjct: 124 NLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV-----HACRRAGVQLGTTVLVIGAG 178

Query: 80  TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG 139
            +GL +V  A+  G A ++   ++P + E  +  G    +  D    +  S +++ I   
Sbjct: 179 PIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDP-AKEEESSIIERIRSA 236

Query: 140 MG--VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT 197
           +G   +   +C+G    ++  +  T+ G G ++++G+G   MV + ++        +K  
Sbjct: 237 IGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQ-MVTVPLVNACAREIDIKSV 294

Query: 198 TFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL--KQPDCVKVLITI 254
                +  +D PI L+   +    + QL+TH  KLE+   A +    K  + +KV+I+ 
Sbjct: 295 ----FRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISC 349

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  118 bits (297), Expect = 1e-31
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 12/223 (5%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LGTV 81
            ++EY+++     +     ++   A+ L+C   T + A  ++A ++   ++ V+G  G +
Sbjct: 125 AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGL 183

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           G  AV  A+    A IIG+D      E  +  G    IN   +        ++ IT   G
Sbjct: 184 GTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQ---DPLAEIRRITESKG 240

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG 201
           VD   +       LS   +      GK +++G+    +   +   +        G+  G 
Sbjct: 241 VDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVG- 297

Query: 202 IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
              +SD   ++     +  K+  ++T  +KLEE ++AI  L+ 
Sbjct: 298 --NQSDFLGIMRLA--EAGKVKPMITKTMKLEEANEAIDNLEN 336

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  115 bits (290), Expect = 1e-30
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 17/226 (7%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA---AWKEAEVEKGSSVAVLGLG 79
            +SEYM++ ++  +    S+    A+ L+   TT  GA   A           V V G+G
Sbjct: 121 GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIG 180

Query: 80  TVGLGAVDGAR-MQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH 138
            + +  +   + +     I+GI ++   ++     G        D        L+  +T 
Sbjct: 181 GLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKD-----AESLINKLTD 235

Query: 139 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTT 198
           G+G     +  G         +      G +I++G+    +  L     A   + L G+ 
Sbjct: 236 GLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEGKRV-SLEAFDTAVWNKKLLGSN 293

Query: 199 FGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
           +G   + +DL  ++   ++ + K +      V L++I+KA   L +
Sbjct: 294 YG---SLNDLEDVVRLSESGKIKPY---IIKVPLDDINKAFTNLDE 333

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  114 bits (287), Expect = 8e-30
 Identities = 42/242 (17%), Positives = 75/242 (30%), Gaps = 30/242 (12%)

Query: 37  RVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAK 96
           +      +   + +S    TGF      A V+ GS V + G G VG  A  GAR+ GAA 
Sbjct: 154 KEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAAC 212

Query: 97  IIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP---- 152
           +I  D+NP + +     G       +  P   + + +  I     VD   +  G      
Sbjct: 213 VIVGDQNPERLKLLSDAGFETIDLRNSAP---LRDQIDQILGKPEVDCGVDAVGFEAHGL 269

Query: 153 ----------SLLSEALETTKVGKGKVIVIGV-------GVDTMVPLNVIALACGGRTLK 195
                       L+   +  + G G + + G+        V+       + L  G    K
Sbjct: 270 GDEANTETPNGALNSLFDVVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTK 328

Query: 196 GTTFGGIKT--KSDLPILLDKCKNKEFKLH--QLLTHHVKLEEIDKAIQLLKQPDCVKVL 251
                       +    L +     +       +    + L++         +    K +
Sbjct: 329 SIRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSPAKFV 388

Query: 252 IT 253
           I 
Sbjct: 389 ID 390

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  111 bits (281), Expect = 5e-29
 Identities = 50/242 (20%), Positives = 86/242 (35%), Gaps = 30/242 (12%)

Query: 37  RVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAK 96
           R      +   + LS    TG+  A   A V  GS+V V G G VGL A   AR+ GAA 
Sbjct: 154 RDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAV 212

Query: 97  IIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP---- 152
           +I  D NP +    +A G        D P   + E +  +     VD   +  G      
Sbjct: 213 VIVGDLNPARLAHAKAQGFEIADLSLDTP---LHEQIAALLGEPEVDCAVDAVGFEARGH 269

Query: 153 -----------SLLSEALETTKVGKGKVIVIGV-------GVDTMVPLNVIALACGGRTL 194
                      ++L+  ++ T+V  GK+ + G+        VD    +  +++  G    
Sbjct: 270 GHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWA 328

Query: 195 KGTTFGG--IKTKSDLPILLDKCKNKEFKLHQLL-THHVKLEEIDKAIQLLKQPDCVKVL 251
           K  +F             L+         + +++    + L++  +           K +
Sbjct: 329 KSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPKKFV 388

Query: 252 IT 253
           I 
Sbjct: 389 ID 390

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  109 bits (275), Expect = 2e-28
 Identities = 38/249 (15%), Positives = 76/249 (30%), Gaps = 25/249 (10%)

Query: 23  TWSEYMVIDANYVVRVDPSID--------LS---HASFLSCGFTTGFGAAWKEAEVEKGS 71
              E+   D  Y+V++  SI+        L+    +                +       
Sbjct: 123 FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCR 182

Query: 72  SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISE 131
            V V+G G +G+      R  G    +   + P + E+                   + +
Sbjct: 183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKD 242

Query: 132 LVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALA-- 188
            V         D   + TG   ++L   +       G + + G      VPL+   L   
Sbjct: 243 SVG------KFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTSGSVPLDYKTLQEI 295

Query: 189 -CGGRTLKGTTFGGIK-TKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL--KQ 244
               +T+ G   G     +  +  L             L+T  V + +  + +++L  K+
Sbjct: 296 VHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKE 355

Query: 245 PDCVKVLIT 253
              +K+ I 
Sbjct: 356 HGEIKIRIL 364

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  108 bits (273), Expect = 5e-28
 Identities = 43/248 (17%), Positives = 88/248 (35%), Gaps = 36/248 (14%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASF---LSCGFTTGFGAAWKEAEVEK------GSSVAV 75
           SE+      Y+VR+  S           +S         A + A   +       SS  V
Sbjct: 125 SEFFTSPEKYLVRIPRSQA-ELGFLIEPISITE-----KALEHAYASRSAFDWDPSSAFV 178

Query: 76  LGLGTVGLGAVDGARMQ--GAAKIIGI---DKNPWKKEKGEAFGMTDFINPDDEPNKSIS 130
           LG G++GL  +   ++   G   +  +   D+     +  E    T +++    P + + 
Sbjct: 179 LGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT-YVDSRQTPVEDVP 237

Query: 131 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIA---- 186
           ++ +       +D+ +E TG P    ++++      G   ++GV  D    ++  A    
Sbjct: 238 DVYEQ------MDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSDWAFEVDAGAFHRE 290

Query: 187 LACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD 246
           +    + L G+    ++      +     K  ++ L  L+T    L E + A        
Sbjct: 291 MVLHNKALVGSVNSHVEHFEAATVTF--TKLPKWFLEDLVTGVHPLSEFEAAFD--DDDT 346

Query: 247 CVKVLITI 254
            +K  I  
Sbjct: 347 TIKTAIEF 354

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 91.1 bits (227), Expect = 1e-21
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 11/184 (5%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSC-GFTTGFGAAWKEAEVEKGSSVAVLGLGTV 81
           ++ +Y   DA     +    DL+  + + C G T     A K A +  G  VA+ G    
Sbjct: 124 SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITV--YKALKSANLMAGHWVAISGAAG- 180

Query: 82  GLG--AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG 139
           GLG  AV  A+  G  +++GID    K+E   + G   FI+   E +  I   V   T G
Sbjct: 181 GLGSLAVQYAKAMG-YRVLGIDGGEGKEELFRSIGGEVFIDFTKEKD--IVGAVLKATDG 237

Query: 140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTF 199
            G       +   + +  +    +   G  +++G+        +V        ++ G+  
Sbjct: 238 -GAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYV 295

Query: 200 GGIK 203
           G   
Sbjct: 296 GNRA 299

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 89.5 bits (223), Expect = 5e-21
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 19/224 (8%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVG 82
            + EY+V D NYV  +   +     + + C   T +    K  +   G  V + G+G  G
Sbjct: 121 GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVY-KGLKVTDTRPGQWVVISGIG--G 177

Query: 83  LG--AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM 140
           LG  AV  AR  G  ++  +D +  K       G    +N  D      +  ++    G 
Sbjct: 178 LGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGAEVAVNARDTD---PAAWLQKEIGGA 233

Query: 141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG 200
                      P   S+A+   + G G + + G+         +  +   G T++G+  G
Sbjct: 234 --HGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPGDF-GTPIFDVVLKGITIRGSIVG 289

Query: 201 GIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
                 DL   LD   + + K         KL++++     L++
Sbjct: 290 TRS---DLQESLDFAAHGDVKAT---VSTAKLDDVNDVFGRLRE 327

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 83.9 bits (208), Expect = 6e-19
 Identities = 39/246 (15%), Positives = 76/246 (30%), Gaps = 23/246 (9%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTV 81
           TW    V     +++V   I L  A+ L     T +       +++ G SV        V
Sbjct: 121 TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGV 180

Query: 82  GLGAVDGARMQGAAKIIGI----DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT 137
           G   +  A   G  + I +           ++ ++ G    I  ++       E+     
Sbjct: 181 GQAVIQIAAALG-LRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRP---EMKNFFK 236

Query: 138 HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDTMVPLNVIALACGGRTLK 195
                     C G  S  +E L     G G ++  G       +  ++++        L+
Sbjct: 237 DMPQPRLALNCVGGKS-STELLRQLARG-GTMVTYGGMAKQPVVASVSLLIF--KDLKLR 292

Query: 196 GTTFGGIKTKSDLPILLDKCKNKEFKLHQ------LLTHHVKLEEIDKAIQLLKQPDCV- 248
           G        K   P    +       L +           V L++   A++   +P    
Sbjct: 293 GFWLSQW-KKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISS 351

Query: 249 KVLITI 254
           K ++T+
Sbjct: 352 KQILTM 357

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 83.4 bits (207), Expect = 7e-19
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 19/224 (8%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVG 82
            ++EY    A+YVV++  ++    A+ + C   T +  A K    + G  VA+ G+G  G
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY-KALKVTGAKPGEWVAIYGIG--G 175

Query: 83  LG--AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM 140
           LG  AV  A+  G   ++ +D    K E  +  G    +NP  E     ++ +K      
Sbjct: 176 LGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNPLKED---AAKFMKEKVG-- 229

Query: 141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG 200
           GV               A  + + G G  +++G+  + M P+ +      G  + G+  G
Sbjct: 230 GVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPEEM-PIPIFDTVLNGIKIIGSIVG 287

Query: 201 GIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
             K   DL   L      + K          LE+I++    + +
Sbjct: 288 TRK---DLQEALQFAAEGKVKTI---IEVQPLEKINEVFDRMLK 325

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 13/231 (5%)

Query: 26  EYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LGTVGLG 84
           EY+V+    +     ++    A+ +   F T +     +  V  G  V V+     V + 
Sbjct: 123 EYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVA 182

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
           A+  A++ G A++I    +  K  + +A G  + +N          + V+ +T G G D 
Sbjct: 183 AIQIAKLFG-ARVIATAGSEDKLRRAKALGADETVNYTHP---DWPKEVRRLTGGKGADK 238

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT 204
             + TG        ++ T  G G++ + G        L    +     ++ G+T     +
Sbjct: 239 VVDHTG-ALYFEGVIKATANG-GRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMA---S 293

Query: 205 KSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCV-KVLITI 254
           KS L  +L   +    KL  ++   + LE   +  +LL++     KV++ +
Sbjct: 294 KSRLFPILRFVEEG--KLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV 342

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 11/220 (5%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLG 84
           SEY+V+   + V    S+D + AS L C   T + A  ++  +  G  V V G G V L 
Sbjct: 145 SEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALF 204

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
            +  A+  G A++I    +  K ++  A G    IN  +E      E V  +T   G D+
Sbjct: 205 GLQIAKATG-AEVIVTSSSREKLDRAFALGADHGINRLEE---DWVERVYALTGDRGADH 260

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT 204
             E  G  + L ++L+      G++ VIGV     V   V  L      ++G + G  + 
Sbjct: 261 ILEIAG-GAGLGQSLKAVAPD-GRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRA 318

Query: 205 KSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
             DL   +D        L  ++    K  E+ +A+  L +
Sbjct: 319 LEDLVGAVD-----RLGLKPVIDMRYKFTEVPEALAHLDR 353

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 72.9 bits (179), Expect = 5e-15
 Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 25/237 (10%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA--AWKEAEVEKGSSVAVLGL-GTV 81
           +E  ++ +N ++     +    A+      +T +    +   A +++G +V + G  G +
Sbjct: 182 AEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGL 241

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN--------------PDDEPNK 127
           G  A   A   G A  I +  +P K E   A G    I+               D +  K
Sbjct: 242 GSYATQFALAGG-ANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWK 300

Query: 128 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIAL 187
              + ++ +T G  +D  FE  G       ++  T+ G G +         M   +   L
Sbjct: 301 RFGKRIRELTGGEDIDIVFEHPG-RETFGASVFVTRKG-GTITTCASTSGYMHEYDNRYL 358

Query: 188 ACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 244
               + + G+ F   +   +   L+      + ++H  L+    LE+  +A   + +
Sbjct: 359 WMSLKRIIGSHFANYREAWEANRLIA-----KGRIHPTLSKVYSLEDTGQAAYDVHR 410

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 70.2 bits (172), Expect = 4e-14
 Identities = 37/250 (14%), Positives = 82/250 (32%), Gaps = 26/250 (10%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA--AWKEAEVEKGSSVAVLGL-G 79
             +EY V+ A+ ++     +    A+       T +    + + A++++G  V + G  G
Sbjct: 172 GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASG 231

Query: 80  TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL------- 132
            +G  A+   +  G    + +  +  K+    A G    IN  +                
Sbjct: 232 GLGSYAIQFVKNGG-GIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVE 290

Query: 133 -------VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVI 185
                  +     G   D  FE TG       ++   + G G V+  G     +   +  
Sbjct: 291 TGRKLAKLVVEKAGREPDIVFEHTG-RVTFGLSVIVARRG-GTVVTCGSSSGYLHTFDNR 348

Query: 186 ALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP 245
            L    + + G+         +        ++    +   ++    L E  +A ++++  
Sbjct: 349 YLWMKLKKIVGSHGA---NHEEQQATNRLFESG--AVVPAMSAVYPLAEAAEACRVVQTS 403

Query: 246 DCV-KVLITI 254
             V KV +  
Sbjct: 404 RQVGKVAVLC 413

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 25/187 (13%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSC-GFTTGFGAAW---KEAEVEKGSSVAVLGLGT 80
           + Y+ +  ++VV +  +I    A+ L C G T      +          G  V ++GLG 
Sbjct: 136 ANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTV-----YSPLVRNGCGPGKKVGIVGLG- 189

Query: 81  VGLG--AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH 138
            G+G      ++  G A+   I ++  K+E     G   +I   +E +           +
Sbjct: 190 -GIGSMGTLISKAMG-AETYVISRSSRKREDAMKMGADHYIATLEEGDWGEK-------Y 240

Query: 139 GMGVDYCFECTGVPSLLSEA--LETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKG 196
               D    C    + +      +  KVG G+++ I +  +    L++        ++  
Sbjct: 241 FDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISI-PEQHEMLSLKPYGLKAVSISY 298

Query: 197 TTFGGIK 203
           +  G IK
Sbjct: 299 SALGSIK 305

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LGTV 81
           TW EY+   A++VV +  SID   A+ +     T +    +   +++   + V      +
Sbjct: 98  TWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAI 157

Query: 82  GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMG 141
           G      +++    ++I + +N    E+    G    I+    P   + E V  +T+G+G
Sbjct: 158 GHLFAQLSQILN-FRLIAVTRNNKHTEELLRLGAAYVIDTSTAP---LYETVMELTNGIG 213

Query: 142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG 201
            D   +  G P   +E   + +   G  + IG+     V    I                
Sbjct: 214 ADAAIDSIGGPD-GNELAFSLRPN-GHFLTIGLLSGIQVNWAEIVTK-AKVHANIFHLRH 270

Query: 202 IKTKSDLPILLDKCKNKEF------KLHQLLTHHV-KLEEIDKAIQLLKQPDCV--KVLI 252
              +   P    +            +L  +  H   +L ++  A+ +++  +    KV +
Sbjct: 271 WNDEVS-PYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKGKVFL 329

Query: 253 T 253
           T
Sbjct: 330 T 330

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 28/188 (14%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSC-GFTT-----GFGAAWKEAEVEKGSSVAVLGL 78
           S +MV +  Y++R   ++ L   + L C G T       FG        E G  + ++GL
Sbjct: 143 SNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLD------EPGKHIGIVGL 196

Query: 79  GTVGLG--AVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKG 135
           G  GLG  AV  A+  G +K+  I  +P KKE+  + FG   F+   D+      E ++ 
Sbjct: 197 G--GLGHVAVKFAKAFG-SKVTVISTSPSKKEEALKNFGADSFLVSRDQ------EQMQ- 246

Query: 136 ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLK 195
                 +D   +       L       K   GK+I++G   +  + L   +L  G + + 
Sbjct: 247 -AAAGTLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGA-PEKPLELPAFSLIAGRKIVA 303

Query: 196 GTTFGGIK 203
           G+  GG+K
Sbjct: 304 GSGIGGMK 311

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 20/184 (10%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFG--AAWKEAEVEKGSSVAVLGLGTVG 82
           ++  V+   +VV++   + +  A+ L C   T +   + +     + G    +LGLG  G
Sbjct: 136 AKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLK--QPGLRGGILGLG--G 191

Query: 83  LG--AVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHG 139
           +G   V  A+  G   +  I  +  K+E+  +  G  D++   D+        +      
Sbjct: 192 VGHMGVKIAKAMG-HHVTVISSSNKKREEALQDLGADDYVIGSDQ------AKMS--ELA 242

Query: 140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTF 199
             +DY  +   V   L   L   K+  GK+I++GV ++  +      L  G + + G+  
Sbjct: 243 DSLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGV-INNPLQFLTPLLMLGRKVITGSFI 300

Query: 200 GGIK 203
           G +K
Sbjct: 301 GSMK 304

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 24/186 (12%)

Query: 25  SEYMVIDANYVVRVDPSID-LSHASFLSC-GFTTGFGAAW---KEAEVEKGSSVAVLGLG 79
           S+ +V+   YV+R+    + L+  + L C G TT     +   +  +   G  V V+G+G
Sbjct: 150 SQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITT-----YSPLRHWQAGPGKKVGVVGIG 204

Query: 80  TVGLG--AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT 137
             GLG   +  A   GA  ++    +  K+E  +A G  + +N  +       + +    
Sbjct: 205 --GLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNA------DEMA--A 253

Query: 138 HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT 197
           H    D+       P  L +     K   G + ++G          V  L    R + G+
Sbjct: 254 HLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGS 312

Query: 198 TFGGIK 203
             GGI 
Sbjct: 313 MIGGIP 318

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 30/187 (16%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSC-GFTTGFGAAW---KEAEVEKGSSVAVLGLGT 80
           S  +V+D NYV+ VD +  L   + L C G TT     +   K ++V KG+ V V G G 
Sbjct: 133 SNNIVVDENYVISVDKNAPLEKVAPLLCAGITT-----YSPLKFSKVTKGTKVGVAGFG- 186

Query: 81  VGLG--AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH 138
            GLG  AV  A   G A++    +N  KK+   + G+  F     +  + +         
Sbjct: 187 -GLGSMAVKYAVAMG-AEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEEL--------- 235

Query: 139 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIA--LACGGRTLKG 196
               D+          L + L+      G + ++G+    + P+  +   +  G R + G
Sbjct: 236 ----DFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPVEVAPVLSVFDFIHLGNRKVYG 290

Query: 197 TTFGGIK 203
           +  GGIK
Sbjct: 291 SLIGGIK 297

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 30/262 (11%), Positives = 69/262 (26%), Gaps = 38/262 (14%)

Query: 23  TWSEYMVIDANYVVRVD-----------PSIDLSHASFLSCGFTTGFGAAWKEAEVEKGS 71
           TW  + + + +  +++              + ++  + +S    T +       ++  G 
Sbjct: 109 TWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGK 168

Query: 72  SVAVL--GLGTVGLGAVDGARMQGAAKIIGI----DKNPWKKEKGEAFGMTDFINPDDEP 125
              +   G   VG  A    ++      I +              +  G T  I  D   
Sbjct: 169 DWFIQNGGTSAVGKYASQIGKLLN-FNSISVIRDRPNLDEVVASLKELGATQVITEDQNN 227

Query: 126 NKSISELVKGIT--HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDTMVP 181
           ++     +K      G        C G  S  +          G ++  G        +P
Sbjct: 228 SREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNN-GLMLTYGGMSFQPVTIP 285

Query: 182 LNVIALACGGRTLKGTTFGGIKTKS------DLPILLDKCKNKEFKLHQLLTHHVKLEEI 235
            ++        T  G     +   +       L  ++   +  +       +     +  
Sbjct: 286 TSLYIF--KNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDA--KSIETLYDGT 341

Query: 236 DKAIQLLKQPDCV----KVLIT 253
               +L +         K LIT
Sbjct: 342 KPLHELYQDGVANSKDGKQLIT 363

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 48/239 (20%), Positives = 98/239 (41%), Gaps = 20/239 (8%)

Query: 24  WSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LGTVG 82
           ++E + +  + ++   P +D + A  L   + T + A  +  ++  G +V VLG  G +G
Sbjct: 114 YAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIG 173

Query: 83  LGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
             A+  A+  GA K+I +       E  ++ G    +  ++      ++ V+  T G GV
Sbjct: 174 TAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLEEG----WAKAVREATGGAGV 228

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDTMVPLNVIALACGGRTLKGTTFG 200
           D   +  G      +A+ T     G+++V+G   G    + +N + L     +L G  +G
Sbjct: 229 DMVVDPIG-GPAFDDAVRTLASE-GRLLVVGFAAGGIPTIKVNRLLL--RNASLIGVAWG 284

Query: 201 GIKTKSDLPILLDKCKNKEFKLHQ-----LLTHHVKLEEIDKAIQLLKQPDCV-KVLIT 253
                      L + +    KL        ++  + L E  +A+Q         K+++ 
Sbjct: 285 EFLRTH--ADYLYETQAGLEKLVAEGMRPPVSARIPLSEGRQALQDFADGKVYGKMVLV 341

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 21/184 (11%), Positives = 51/184 (27%), Gaps = 17/184 (9%)

Query: 23  TWSEYMVIDANYVVRVDPSIDLSHA-SFLSCGFTTGFGAAW---KEAEVEKGSSVAVLG- 77
           +W+EY V +A   + +  ++      + +    T     A       + E   +  +   
Sbjct: 119 SWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLT-----AIAMFDIVKQEGEKAFVMTAG 173

Query: 78  LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT 137
              +    +  A+ +G  + I   +   +    +  G    +N            ++ + 
Sbjct: 174 ASQLCKLIIGLAKEEG-FRPIVTVRRDEQIALLKDIGAAHVLNEKAPD---FEATLREVM 229

Query: 138 HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDTMVPLNVIALACGGRTLKG 196
                    +      L S           + I+ G    D  V      L    + ++G
Sbjct: 230 KAEQPRIFLDAVT-GPLASAIFNAMPKR-ARWIIYGRLDPDATVIREPGQLIFQHKHIEG 287

Query: 197 TTFG 200
               
Sbjct: 288 FWLS 291

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 54.6 bits (131), Expect = 7e-09
 Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 12  GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSH-ASFLSCGFTTGFGAAW---KEAEV 67
             K       + +S+Y  I A+  + +      +  AS      T     A    +   +
Sbjct: 115 MGKTVAAIGGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLT-----ALGMVETMRL 169

Query: 68  EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN 126
           E  S++        +G          G  K++ I +   + +  +A G     N      
Sbjct: 170 EGHSALVHTAAASNLGQMLNQICLKDG-IKLVNIVRKQEQADLLKAQGAVHVCNAASP-- 226

Query: 127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVI 170
            +  + +       G    F+ TG   L  + L   +    K  
Sbjct: 227 -TFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSA 269

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 15/222 (6%)

Query: 25  SEYMVIDANYVVRVDPSIDLSH-ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVG 82
           S    I A+    +  +I     A+    G T  +    K  E++           G VG
Sbjct: 96  SSVHNIIADKAAILPAAISFEQAAASFLKGLTVYY-LLRKTYEIKPDEQFLFHAAAGGVG 154

Query: 83  LGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
           L A   A+  G AK+IG      K +     G    IN  +E    + E +K IT G  V
Sbjct: 155 LIACQWAKALG-AKLIGTVGTAQKAQSALKAGAWQVINYREE---DLVERLKEITGGKKV 210

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIAL-ACGGRTLKGTTFGG 201
              ++  G  +    +L+  +  +G ++  G     +  +N+  L   G   +   +  G
Sbjct: 211 RVVYDSVGRDT-WERSLDCLQR-RGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQG 268

Query: 202 -IKTKSDL----PILLDKCKNKEFKLHQLLTHHVKLEEIDKA 238
            I T+ +L      L     +   K+         L++  +A
Sbjct: 269 YITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRA 310

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 43/223 (19%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 29  VIDANYVVRVDPSIDLSHASFLSCGFTTGFGA---AWKEAEVEKGSSVAVLGL-GTVGLG 84
           +     V+++            + G      A     +   V+KG  V +    G VGL 
Sbjct: 105 ISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLI 164

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
                +M+GA   I +     K +  + +G    IN   E    I   V   T+G GVD 
Sbjct: 165 LNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASKE---DILRQVLKFTNGKGVDA 220

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG-IK 203
            F+  G       +L   K  KG  +  G     + P ++  L+    TL      G I 
Sbjct: 221 SFDSVG-KDTFEISLAALKR-KGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIA 278

Query: 204 TKSDL----PILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL 242
              +             +K+  +   +     L +   A   +
Sbjct: 279 DPEEWKYYSDEFFGLVNSKKLNIK--IYKTYPLRDYRTAAADI 319

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 9/169 (5%)

Query: 25  SEYMVIDANYVVRVDPSIDLSH-ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVG 82
           SE  V+    +V++  S+     A+ +  G T  +    +  +V+ G  +      G VG
Sbjct: 96  SEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQY-LLRQTYQVKPGEIILFHAAAGGVG 154

Query: 83  LGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
             A   A+  G AK+IG   +P K    +A G  + I+   E    +++ V  +T G   
Sbjct: 155 SLACQWAKALG-AKLIGTVSSPEKAAHAKALGAWETIDYSHE---DVAKRVLELTDGKKC 210

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGG 191
              ++  G       +L++    +G V+  G     +  +N+  LA   
Sbjct: 211 PVVYDGVG-QDTWLTSLDSVAP-RGLVVSFGNASGPVSGVNLGILAQKD 257

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 25  SEYMVIDANYVVRVDPSIDLSHASFLSC---GFTTGFGAAW----KEAEVEKGSSVAVLG 77
           S+  +  A  +++V   +DL           G T     A     +  +V+ G  V +  
Sbjct: 99  SQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMT-----AQYLLHQTHKVKPGDYVLIHA 153

Query: 78  L-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI 136
             G +G   V  AR  G A +IG      K E     G    IN   +     +E+V+ I
Sbjct: 154 AAGGMGHIMVPWARHLG-ATVIGTVSTEEKAETARKLGCHHTINYSTQ---DFAEVVREI 209

Query: 137 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG 173
           T G GVD  ++  G  + L ++L+  +  +G     G
Sbjct: 210 TGGKGVDVVYDSIGKDT-LQKSLDCLRP-RGMCAAYG 244

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 9/176 (5%)

Query: 26  EYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LGTVGLG 84
           EY +   + V ++   +D    + +   + T + A    A V+ G SV V G  G VGL 
Sbjct: 127 EYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLA 186

Query: 85  AVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 144
           A   AR  G  KI+G       ++     G  +  N  +       + +K      G+D 
Sbjct: 187 ACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHREVN---YIDKIKKYVGEKGIDI 242

Query: 145 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG 200
             E       LS+ L     G G+VIV+G      + +N         ++ G T  
Sbjct: 243 IIEMLA-NVNLSKDLSLLSHG-GRVIVVGSR--GTIEINPRDTMAKESSIIGVTLF 294

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 45/255 (17%), Positives = 88/255 (34%), Gaps = 33/255 (12%)

Query: 24  WSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LGTVG 82
           W+E +     +V ++   +  S A+     F T +   ++ A + +G SV V    G VG
Sbjct: 97  WAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVG 156

Query: 83  LGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV 142
                         + G   + +K E  +    T   + + +      + VK I+   GV
Sbjct: 157 QAVAQLCSTVPNVTVFGTA-STFKHEAIKDSV-THLFDRNAD----YVQEVKRIS-AEGV 209

Query: 143 DYCFECTGVPSLLSEALETTKVGKGKVIVIGV----------------GVDTMVPLNVIA 186
           D   +C        + L   K   G  I+ G                     +  +N I 
Sbjct: 210 DIVLDCLCG-DNTGKGLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIK 267

Query: 187 LACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQ------LLTHHVKLEEIDKAIQ 240
           L    + + G +   +  K     L+     K   L+       ++     LEE+ +A+Q
Sbjct: 268 LYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQ 327

Query: 241 LLKQPDCV-KVLITI 254
            +     + K+++ +
Sbjct: 328 RIHDRGNIGKLILDV 342

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 18/155 (11%)

Query: 24  WSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW----KEAEVEKGSSVAVLG-L 78
           ++EY V+ A+    V         + L  G T     A+    +   + +G  V V    
Sbjct: 120 FAEYTVVPASIATPVPSVKPEY-LTLLVSGTT-----AYISLKELGGLSEGKKVLVTAAA 173

Query: 79  GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH 138
           G  G  A+  ++      +IG   +  K    ++ G    IN   EP   +  ++K   +
Sbjct: 174 GGTGQFAMQLSKKAK-CHVIGTCSSDEKSAFLKSLGCDRPINYKTEP---VGTVLK-QEY 228

Query: 139 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG 173
             GVD  +E  G   +   A++     KG++IVIG
Sbjct: 229 PEGVDVVYESVGGA-MFDLAVDALAT-KGRLIVIG 261

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 10/176 (5%)

Query: 26  EYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGT--VGL 83
           +Y+ +    ++ +   + L+ A+ +   + T F        V+ G  V +   G   VG 
Sbjct: 119 QYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHA-GLSGVGT 177

Query: 84  GAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD 143
            A+   RM GA   +    +  K +  E  G     N   E     SE     T G GV+
Sbjct: 178 AAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKKE---DFSEATLKFTKGAGVN 233

Query: 144 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGR-TLKGTT 198
              +C G  S   + +    +  G+ ++ G+     +   + +     R +L  + 
Sbjct: 234 LILDCIG-GSYWEKNVNCLALD-GRWVLYGLMGGGDINGPLFSKLLFKRGSLITSL 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.97
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.94
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.05
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.04
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.95
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.88
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.85
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.8
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.74
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.55
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.44
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.43
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.42
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.38
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.35
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.25
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.17
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.15
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.11
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.04
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.99
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.97
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.95
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.93
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.86
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.84
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.82
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.78
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.78
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.77
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.75
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.74
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.71
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.65
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.6
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.6
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.6
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.6
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.59
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.57
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.55
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.54
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.52
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.51
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.5
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.49
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.49
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.49
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.48
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.48
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.48
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.46
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.45
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.45
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.45
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.45
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.44
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.43
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.41
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.4
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.4
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.4
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.39
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.38
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.38
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.38
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.38
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.37
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.37
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.36
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.36
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.36
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.35
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.35
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.34
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.34
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.34
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.34
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.34
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.32
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.32
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.32
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.32
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.31
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.31
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.3
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.29
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.29
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.28
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.28
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.28
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.28
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.27
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.26
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.25
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.25
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.25
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.25
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.25
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.25
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.24
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.23
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.23
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.23
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.23
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.22
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.22
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.22
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.21
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.21
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.21
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.21
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.21
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.2
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.2
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.2
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.2
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.2
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.2
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.19
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.18
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.18
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.18
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.17
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.16
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.16
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.15
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.15
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.15
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.15
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.14
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.14
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.14
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.14
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.13
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.13
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.13
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.12
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.12
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.11
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.11
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.11
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.11
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.1
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.1
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.1
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.1
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.1
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.1
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.1
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.09
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.09
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.08
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.07
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.07
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.07
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.06
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.06
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.06
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.06
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.06
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.06
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.06
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.05
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.05
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.05
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.05
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.05
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.04
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.04
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.04
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.04
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.04
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.04
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.04
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.03
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.03
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.03
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.03
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.03
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.03
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.02
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.02
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.02
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.02
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.01
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.01
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.0
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.0
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.0
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.0
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.0
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.99
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.99
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.99
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.98
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.98
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.98
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.98
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.98
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.98
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.98
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.97
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.97
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.96
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.96
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.96
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.96
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.95
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.95
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.95
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.94
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.94
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.94
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.94
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.94
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.94
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.94
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.94
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.93
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.93
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.93
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.93
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.92
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.92
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.92
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.92
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.91
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.9
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.9
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.9
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.9
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.9
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.9
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.89
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.89
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.89
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.88
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.88
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.88
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.87
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.87
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.87
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.87
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.86
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.86
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.86
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.86
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.86
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.85
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.85
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.85
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.84
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.84
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.84
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.84
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.84
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.84
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.83
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.83
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.83
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.83
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.81
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.81
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.81
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.8
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.8
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.8
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.8
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.8
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.8
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.79
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.79
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.78
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.78
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.78
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.78
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.77
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.77
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.77
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.77
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.76
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.76
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.75
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.73
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.73
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.73
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.73
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.72
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.71
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.71
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.71
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.7
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.7
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.7
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.69
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.69
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.69
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.69
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.69
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.68
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.68
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.68
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.68
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.67
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.67
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.67
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.66
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.66
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.66
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.65
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.65
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.65
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.64
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.64
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.64
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.64
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.64
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.63
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.63
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.63
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.63
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.62
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.62
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.62
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.62
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.62
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.62
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.62
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.62
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.62
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.61
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.61
1spx_A	278	Short-chain reductase family member (5L265); paral	96.61
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.61
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.61
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.61
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.61
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.6
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.59
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.59
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.58
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.58
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.57
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.57
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.57
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.56
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.56
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.55
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.55
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.54
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.54
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.54
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.53
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.53
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.53
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.53
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.53
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.53
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.53
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.52
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.51
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.5
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.5
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.5
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.49
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.49
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.49
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	96.49
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.49
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.49
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.48
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.48
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.48
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.48
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.48
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.48
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.47
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.46
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.46
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.45
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	96.45
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.44
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.44
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.43
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.43
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.42
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.41
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.41
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.41
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.41
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.4
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	96.4
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.39
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.39
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.38
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.38
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.38
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.38
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.37
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.37
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.36
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.36
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.36
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.35
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.35
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.35
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.35
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.34
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.34
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.33
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.33
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.32
2o07_A	304	Spermidine synthase; structural genomics, structur	96.32
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.31
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.3
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.29
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.29
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.28
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.28
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.27
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.27
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	96.26
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.25
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.25
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.24
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.24
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.24
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.23

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=8.3e-43  Score=291.21  Aligned_cols=229  Identities=41%  Similarity=0.785  Sum_probs=207.4

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      |+|+||+++|+..++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+.+|++++
T Consensus       146 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~  225 (378)
T 3uko_A          146 STFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGID  225 (378)
T ss_dssp             CCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEEC
T ss_pred             cceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            69999999999999999999999999999999999999988889999999999999999999999999999997899999


Q ss_pred             CCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHccc-CCcEEEEEccCCC-ce
Q 025336          102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV-GKGKVIVIGVGVD-TM  179 (254)
Q Consensus       102 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~~g~~~~-~~  179 (254)
                      ++++++++++++|+++++++++ ...++.+.+++++++ ++|++|||+|++..+..+++++++ + |+++.+|.... ..
T Consensus       226 ~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~i~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~g~-G~iv~~G~~~~~~~  302 (378)
T 3uko_A          226 IDSKKYETAKKFGVNEFVNPKD-HDKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQE  302 (378)
T ss_dssp             SCTTHHHHHHTTTCCEEECGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTT-CEEEECSCCCTTCC
T ss_pred             CCHHHHHHHHHcCCcEEEcccc-CchhHHHHHHHhcCC-CCCEEEECCCCHHHHHHHHHHhhccC-CEEEEEcccCCCCc
Confidence            9999999999999999999872 117899999999988 999999999997789999999999 6 99999998654 45


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++++..++ +++++.|+..+.+...++++++++++++|+++++++++++|||+++++||+.+.+++..|+||++
T Consensus       303 ~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~Kvvi~~  376 (378)
T 3uko_A          303 ISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLDT  376 (378)
T ss_dssp             EEECTHHHH-TTCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCSEEEEET
T ss_pred             cccCHHHHh-cCcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCceEEEEec
Confidence            667777776 59999998776555567799999999999999989999999999999999999988888999975

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.3e-42  Score=287.96  Aligned_cols=228  Identities=29%  Similarity=0.449  Sum_probs=205.1

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+++|+++
T Consensus       142 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~  221 (371)
T 1f8f_A          142 QSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAV  221 (371)
T ss_dssp             TCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999999788899999999999999999999999999999679999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ce
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM  179 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  179 (254)
                      ++++++.++++++|+++++++++   .++.+.+++.+++ ++|++||++|.+..++.++++++++ |+++.+|.... ..
T Consensus       222 ~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~  296 (371)
T 1f8f_A          222 DIVESRLELAKQLGATHVINSKT---QDPVAAIKEITDG-GVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTT  296 (371)
T ss_dssp             ESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCC
T ss_pred             CCCHHHHHHHHHcCCCEEecCCc---cCHHHHHHHhcCC-CCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCc
Confidence            99999999999999999999987   7888999998887 9999999999876889999999999 99999998754 34


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++++..++.+++++.|+..+.+...++++++++++++|++++.+++++ |||+++++||+.+.+++.+|+||++
T Consensus       297 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~  370 (371)
T 1f8f_A          297 AQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKI  370 (371)
T ss_dssp             CCCCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             cccCHHHHHhCCCEEEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEee
Confidence            5677777778999999987654322456899999999999888888888 9999999999999887778999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.8e-41  Score=283.05  Aligned_cols=229  Identities=37%  Similarity=0.697  Sum_probs=202.2

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID  101 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~  101 (254)
                      |+|+||+++|+..++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+++|++++
T Consensus       148 G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  227 (376)
T 1e3i_A          148 SSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID  227 (376)
T ss_dssp             CCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             ccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            89999999999999999999999999999999999999987889999999999999999999999999999997799999


Q ss_pred             CCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceee
Q 025336          102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVP  181 (254)
Q Consensus       102 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  181 (254)
                      ++++++++++++|+++++++++ ..+++.+.+++.+++ ++|++|||+|.+..+..+++++++++|+++.+|... ...+
T Consensus       228 ~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~v~~~~~~-g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~-~~~~  304 (376)
T 1e3i_A          228 INGEKFPKAKALGATDCLNPRE-LDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV-DEMT  304 (376)
T ss_dssp             SCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHHTS-CBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS-SEEE
T ss_pred             CCHHHHHHHHHhCCcEEEcccc-ccchHHHHHHHHhCC-CccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCC-Cccc
Confidence            9999999999999999998763 014688889888887 999999999987688999999998438999999843 3566


Q ss_pred             ccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          182 LNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       182 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +++..++.++ ++.|+..+.+...++++++++++++|+++++++++++|||+++++||+.+.+++.+|+||++
T Consensus       305 ~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  376 (376)
T 1e3i_A          305 IPTVDVILGR-SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF  376 (376)
T ss_dssp             EEHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             cCHHHhhccC-eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcceEEEeC
Confidence            7777777788 99998754333346789999999999988888899999999999999999888778999975

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=5e-41  Score=280.02  Aligned_cols=229  Identities=36%  Similarity=0.655  Sum_probs=201.0

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++|+..++++|++++++ |+++++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+.+|+++
T Consensus       144 ~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  222 (373)
T 1p0f_A          144 TSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGV  222 (373)
T ss_dssp             TCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            3899999999999999999999999 999999999999998788999999999999999999999999999999779999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ce
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM  179 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  179 (254)
                      +++++++++++++|+++++++++ ..+++.+.+++.+++ ++|++|||+|.+..+..+++++++++|+++.+|.... ..
T Consensus       223 ~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~i~~~t~g-g~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~  300 (373)
T 1p0f_A          223 GTHKDKFPKAIELGATECLNPKD-YDKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNER  300 (373)
T ss_dssp             CSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCC
T ss_pred             CCCHHHHHHHHHcCCcEEEeccc-ccchHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCc
Confidence            99999999999999999998863 014688889998887 9999999999876889999999983389999997654 34


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++++..++.++ ++.|+..+.+. .++++++++++++|++++.++++++|||+++++||+.+.+++..|++|++
T Consensus       301 ~~~~~~~~~~~~-~i~g~~~~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 1p0f_A          301 LPLDPLLLLTGR-SLKGSVFGGFK-GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY  373 (373)
T ss_dssp             EEECTHHHHTTC-EEEECSGGGCC-GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred             cccCHHHhccCc-eEEeeccCCcC-HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence            667777777677 99998754332 26799999999999988888899999999999999999888778999875

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=6.1e-42  Score=284.44  Aligned_cols=242  Identities=25%  Similarity=0.305  Sum_probs=217.8

Q ss_pred             CCCCCcccccCCceeeee---------------------e---ccCcceeeEEecCCceEEcCCCCCccccccccchhhh
Q 025336            1 MLDGTSRMSVRGQKLYHI---------------------F---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTT   56 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~---------------------~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~t   56 (254)
                      +|+++..|++ ||+|++.                     .   .+|+|+||+++|+..++++|+++++++|++++++++|
T Consensus        98 vG~~v~~~~v-GDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t  176 (363)
T 3uog_A           98 VGKSVTRFRP-GDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT  176 (363)
T ss_dssp             ECTTCCSCCT-TCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHH
T ss_pred             ECCCCCCCCC-CCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHH
Confidence            3788899999 9999865                     1   2489999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHh
Q 025336           57 GFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        57 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      ||+++.+..++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|+++++++..   +++.+.++++
T Consensus       177 a~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~v~~~  252 (363)
T 3uog_A          177 AWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLE---EDWVERVYAL  252 (363)
T ss_dssp             HHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCEEEcCCc---ccHHHHHHHH
Confidence            99999888999999999999999999999999999999 9999999999999999999999999655   7899999999


Q ss_pred             hCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHh
Q 025336          137 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCK  216 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~  216 (254)
                      +++.++|++|||+|.+ .+..++++++++ |+++.+|...+...+++...++.+++++.|+...   ..+++++++++++
T Consensus       253 ~~g~g~D~vid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~  327 (363)
T 3uog_A          253 TGDRGADHILEIAGGA-GLGQSLKAVAPD-GRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVG---HRRALEDLVGAVD  327 (363)
T ss_dssp             HTTCCEEEEEEETTSS-CHHHHHHHEEEE-EEEEEECCCSSCEECCBTTHHHHTCCEEEECCCC---CHHHHHHHHHHHH
T ss_pred             hCCCCceEEEECCChH-HHHHHHHHhhcC-CEEEEEecCCCcccCcCHHHHHhCCcEEEEEecC---CHHHHHHHHHHHH
Confidence            9888999999999965 789999999999 9999999876644667777778899999998754   3567999999999


Q ss_pred             CCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          217 NKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +++  ++++++++|||+++++||+.+.+++.+|+||++
T Consensus       328 ~g~--l~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~  363 (363)
T 3uog_A          328 RLG--LKPVIDMRYKFTEVPEALAHLDRGPFGKVVIEF  363 (363)
T ss_dssp             HHT--CCCCEEEEEEGGGHHHHHHTGGGCCSBEEEEEC
T ss_pred             cCC--CccceeeEEcHHHHHHHHHHHHcCCCccEEEeC
Confidence            998  567888999999999999999888766999975

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=3.5e-41  Score=281.09  Aligned_cols=231  Identities=37%  Similarity=0.660  Sum_probs=202.5

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+.+|+++
T Consensus       143 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~  222 (374)
T 2jhf_A          143 TSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGV  222 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            38999999999999999999999999999999999999998788999999999999999999999999999998779999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ce
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM  179 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  179 (254)
                      +++++++++++++|+++++++++ ..+++.+.+++.+++ ++|++|||+|.+..+..+++++++++|+++.+|.... ..
T Consensus       223 ~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~  300 (374)
T 2jhf_A          223 DINKDKFAKAKEVGATECVNPQD-YKKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN  300 (374)
T ss_dssp             CSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCC
T ss_pred             cCCHHHHHHHHHhCCceEecccc-cchhHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCc
Confidence            99999999999999999998763 014688888888877 9999999999876889999999984389999997654 34


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++++..++.++ ++.|+..+.+...++++++++++++|++++.++++++|||+++++||+.+.+++..|++|++
T Consensus       301 ~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  374 (374)
T 2jhf_A          301 LSMNPMLLLSGR-TWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF  374 (374)
T ss_dssp             EEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             cccCHHHHhcCC-eEEEeccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence            567777777778 99998755433346789999999999988888899999999999999999888778999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.8e-41  Score=280.83  Aligned_cols=231  Identities=41%  Similarity=0.714  Sum_probs=202.5

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+.+|+++
T Consensus       144 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~  223 (374)
T 1cdo_A          144 TSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAV  223 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            38999999999999999999999999999999999999998788999999999999999999999999999999779999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCcee
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMV  180 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  180 (254)
                      +++++++++++++|+++++++++ ..+++.+.+++.+++ ++|++|||+|.+..+..+++++++++|+++.+|.......
T Consensus       224 ~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~  301 (374)
T 1cdo_A          224 DLNPDKFEKAKVFGATDFVNPND-HSEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDV  301 (374)
T ss_dssp             CSCGGGHHHHHHTTCCEEECGGG-CSSCHHHHHHHHHTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCE
T ss_pred             cCCHHHHHHHHHhCCceEEeccc-cchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCc
Confidence            99999999999999999998763 014688888888887 9999999999876889999999983389999998654345


Q ss_pred             eccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          181 PLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       181 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      ++++..++.++ ++.|+..+.+...++++++++++++|++++.++++++|||+++++||+.+.+++.+|++|++
T Consensus       302 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  374 (374)
T 1cdo_A          302 ATRPIQLIAGR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  374 (374)
T ss_dssp             EECHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccCHHHHhcCC-eEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence            67777777777 99998754433346789999999999988888899999999999999999988778999975

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=2.2e-41  Score=281.61  Aligned_cols=242  Identities=20%  Similarity=0.339  Sum_probs=216.6

Q ss_pred             CCCCCcccccCCceeeee---------------------------eccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++..|++ ||+|++.                           ..+|+|+||+++|+..++++|+++++++|+ ++.+
T Consensus        90 vG~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~  167 (370)
T 4ej6_A           90 AGSAVRDIAP-GARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEP  167 (370)
T ss_dssp             ECTTCCSSCT-TCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHH
T ss_pred             ECCCCCCCCC-CCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhH
Confidence            3788889999 9999752                           235999999999999999999999999998 6689


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|++.++++++   .++.+.+
T Consensus       168 ~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~i  243 (370)
T 4ej6_A          168 LACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSA---GDVVEAI  243 (370)
T ss_dssp             HHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTS---SCHHHHH
T ss_pred             HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCC---cCHHHHH
Confidence            99999998 7899999999999999999999999999999988999999999999999999999999988   8899999


Q ss_pred             HH---hhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCCCCCCHH
Q 025336          134 KG---ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIKTKSDLP  209 (254)
Q Consensus       134 ~~---~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~  209 (254)
                      ++   ++++ ++|++|||+|.+..+..++++++++ |+++.+|.... ...+++...++.+++++.|+...    ..+++
T Consensus       244 ~~~~~~~~g-g~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~----~~~~~  317 (370)
T 4ej6_A          244 AGPVGLVPG-GVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRVLGSFIN----PFVHR  317 (370)
T ss_dssp             HSTTSSSTT-CEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSC----TTCHH
T ss_pred             HhhhhccCC-CCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCHHHHHhCCcEEEEeccC----hHHHH
Confidence            88   7777 9999999999877899999999999 99999998765 45678888888899999998753    35699


Q ss_pred             HHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe--eEEEEeC
Q 025336          210 ILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC--VKVLITI  254 (254)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~k~vi~~  254 (254)
                      ++++++++|+++++++++++|||+++++||+.+.+++.  +|+++++
T Consensus       318 ~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~  364 (370)
T 4ej6_A          318 RAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSA  364 (370)
T ss_dssp             HHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC-
T ss_pred             HHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcc
Confidence            99999999999999999999999999999999987764  4887753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=3e-41  Score=281.47  Aligned_cols=231  Identities=39%  Similarity=0.687  Sum_probs=202.5

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+.+|+++
T Consensus       142 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~  221 (373)
T 2fzw_A          142 TSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGV  221 (373)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            38999999999999999999999999999999999999998788999999999999999999999999999999779999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ce
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TM  179 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  179 (254)
                      +++++++++++++|+++++++++ ...++.+.+++.+++ ++|++|||+|.+..+..+++++++++|+++.+|.... ..
T Consensus       222 ~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~v~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~  299 (373)
T 2fzw_A          222 DINKDKFARAKEFGATECINPQD-FSKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE  299 (373)
T ss_dssp             CSCGGGHHHHHHHTCSEEECGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCC
T ss_pred             cCCHHHHHHHHHcCCceEecccc-ccccHHHHHHHHhCC-CCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCce
Confidence            99999999999999999998763 114688888888887 9999999999876889999999984389999997654 34


Q ss_pred             eeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          180 VPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       180 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .++++..++.++ ++.|+..+.+...++++++++++++|++++.++++++|||+++++||+.+.+++..|++|++
T Consensus       300 ~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 2fzw_A          300 IATRPFQLVTGR-TWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  373 (373)
T ss_dssp             EEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             eeeCHHHHhcCC-EEEEeccCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcceEEEeC
Confidence            567777777677 99998755433346789999999999988888899999999999999999887778999875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=9.4e-41  Score=276.67  Aligned_cols=244  Identities=18%  Similarity=0.323  Sum_probs=213.0

Q ss_pred             CCCCCcccccCCceeeeee----------------------------ccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++.+|++ ||+|++..                            ..|+|+||+++|++.++++|+++++++|+++ .
T Consensus        78 vG~~V~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~  155 (356)
T 1pl8_A           78 VGSSVKHLKP-GDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-E  155 (356)
T ss_dssp             ECTTCCSCCT-TCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-H
T ss_pred             ECCCCCCCCC-CCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-c
Confidence            3788889999 99998531                            2599999999999999999999999999876 6


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      ++.|||+++ +..++++|++|||+|+|++|++++|+||.+|+++|++++++++++++++++|++++++++..+..++.+.
T Consensus       156 ~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~  234 (356)
T 1pl8_A          156 PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARK  234 (356)
T ss_dssp             HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHH
T ss_pred             hHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHH
Confidence            889999998 7889999999999999999999999999999978999999999999999999999998871001677788


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      +++.++ .++|++||++|.+..+..++++++++ |+++.+|.... ..++++..++.+++++.|+...    ..++++++
T Consensus       235 i~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~----~~~~~~~~  307 (356)
T 1pl8_A          235 VEGQLG-CKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSE-MTTVPLLHAAIREVDIKGVFRY----CNTWPVAI  307 (356)
T ss_dssp             HHHHHT-SCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCS-CCCCCHHHHHHTTCEEEECCSC----SSCHHHHH
T ss_pred             HHHHhC-CCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCCC-CCccCHHHHHhcceEEEEeccc----HHHHHHHH
Confidence            888877 59999999999877789999999999 99999997543 4567777788899999997642    46799999


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +++++|+++++++++++|||+++++||+.+.++..+|+||++
T Consensus       308 ~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~  349 (356)
T 1pl8_A          308 SMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKC  349 (356)
T ss_dssp             HHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             HHHHcCCCChHHheEEEecHHHHHHHHHHHhCCCceEEEEeC
Confidence            999999998889999999999999999999888446999874

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.5e-41  Score=280.99  Aligned_cols=244  Identities=21%  Similarity=0.293  Sum_probs=216.9

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEc-CC
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-LG   79 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g   79 (254)
                      +|+++..|++ ||+|+++...|+|+||+++|++.++++|+++++++|++++++++|||+++.+..++++|++|||+| +|
T Consensus       100 vG~~v~~~~v-GdrV~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g  178 (353)
T 4dup_A          100 VGPGVSGYAV-GDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTS  178 (353)
T ss_dssp             ECTTCCSCCT-TCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTS
T ss_pred             ECCCCCCCCC-CCEEEEecCCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            3788899999 999999887899999999999999999999999999999999999999998889999999999996 59


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      ++|++++|+++..|+ +|+++++++++.+.++++|++.++++++   .++.+.+.+.+ +.++|++|||+|++ .+..++
T Consensus       179 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~~~~~~-~~g~Dvvid~~g~~-~~~~~~  252 (353)
T 4dup_A          179 GIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRGINYRS---EDFAAVIKAET-GQGVDIILDMIGAA-YFERNI  252 (353)
T ss_dssp             HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHH-SSCEEEEEESCCGG-GHHHHH
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCCc---hHHHHHHHHHh-CCCceEEEECCCHH-HHHHHH
Confidence            999999999999999 9999999999999999999999999988   88999999988 66999999999987 789999


Q ss_pred             HHcccCCcEEEEEccCCCceee-ccHHHHHhCCCEEEeeecCCCCCC-------CCHHHHHHHHhCCCCCCCCceEEEee
Q 025336          160 ETTKVGKGKVIVIGVGVDTMVP-LNVIALACGGRTLKGTTFGGIKTK-------SDLPILLDKCKNKEFKLHQLLTHHVK  231 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~i~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (254)
                      ++++++ |+++.+|...+.... ++...++.+++++.|+....+...       +.++++++++++|+  +++.++++||
T Consensus       253 ~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--l~~~i~~~~~  329 (353)
T 4dup_A          253 ASLAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGT--VAPVIHKVFA  329 (353)
T ss_dssp             HTEEEE-EEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTS--SCCCEEEEEE
T ss_pred             HHhccC-CEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCC--ccCCcceEEe
Confidence            999999 999999987663333 666777789999999886543211       11778899999999  5677889999


Q ss_pred             cccHHHHHHHHcCCCe-eEEEEeC
Q 025336          232 LEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       232 ~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++||+.+.+++. +|+||++
T Consensus       330 l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          330 FEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             GGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999999999988876 5999975

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1.1e-40  Score=275.53  Aligned_cols=247  Identities=18%  Similarity=0.258  Sum_probs=212.8

Q ss_pred             CCCCCcccccCCceeeee---------------------------eccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++..+++ ||+|...                           ..+|+|+||+++|++.++++|+++++++|++++ +
T Consensus        68 vG~~V~~~~~-GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~-~  145 (346)
T 4a2c_A           68 VGSGVDDLHP-GDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE-P  145 (346)
T ss_dssp             ECTTCCSCCT-TCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH-H
T ss_pred             ECCCcccccC-CCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhch-H
Confidence            3788889999 9998642                           234899999999999999999999999999874 4


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.+++.+ ....++++|++|||+|+|++|++++|++|.+|+..+++++++++|+++++++|+++++|+++   .+..+.+
T Consensus       146 ~~~~~~~-~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~---~~~~~~~  221 (346)
T 4a2c_A          146 ITVGLHA-FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE---MSAPQMQ  221 (346)
T ss_dssp             HHHHHHH-HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT---SCHHHHH
T ss_pred             HHHHHHH-HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC---CCHHHHH
Confidence            4444544 58899999999999999999999999999999977788999999999999999999999998   8888889


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-c-eeeccHHHHHhCCCEEEeeecCCCC--CCCCHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-T-MVPLNVIALACGGRTLKGTTFGGIK--TKSDLP  209 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~  209 (254)
                      ++++++.++|+++|++|.+..++.++++++++ |+++.+|.... . ....++..++.+++++.|++.....  ..++++
T Consensus       222 ~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~  300 (346)
T 4a2c_A          222 SVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWE  300 (346)
T ss_dssp             HHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHH
T ss_pred             HhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHH
Confidence            99988889999999999888899999999999 99999998766 2 2234455677799999998754322  245689


Q ss_pred             HHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          210 ILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++++|+++++++++++|||+++++||+.+.+++. +|+||.+
T Consensus       301 ~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          301 TASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             HHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             HHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            99999999999999999999999999999999988876 6999975

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=2.4e-41  Score=279.91  Aligned_cols=246  Identities=23%  Similarity=0.349  Sum_probs=215.0

Q ss_pred             CCCCCcccccCCceeeee------------------------------eccCcceeeEEecCC--ceEEcCCCCCccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI------------------------------FSCSTWSEYMVIDAN--YVVRVDPSIDLSHAS   48 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~------------------------------~~~g~~a~~~~v~~~--~v~~~p~~~~~~~aa   48 (254)
                      +|+++.+|++ ||+|+..                              ..+|+|+||+++|+.  .++++|+++++++|+
T Consensus        68 vG~~v~~~~v-GdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa  146 (352)
T 3fpc_A           68 VGSEVKDFKP-GDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAV  146 (352)
T ss_dssp             ECTTCCSCCT-TCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHT
T ss_pred             ECCCCCcCCC-CCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHh
Confidence            3788999999 9999842                              135999999999976  899999999999999


Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCch
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS  128 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~  128 (254)
                      +++.++.|||+++ +..++++|++|||+|+|++|++++|+||.+|+.+|++++.+++++++++++|+++++++++   .+
T Consensus       147 ~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~  222 (352)
T 3fpc_A          147 MIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN---GD  222 (352)
T ss_dssp             TTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGG---SC
T ss_pred             hccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCC---cC
Confidence            9999999999998 7899999999999999999999999999999978999999999999999999999999988   88


Q ss_pred             HHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHH--HHhCCCEEEeeecCCCCCC
Q 025336          129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIA--LACGGRTLKGTTFGGIKTK  205 (254)
Q Consensus       129 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~--~~~~~~~i~g~~~~~~~~~  205 (254)
                      +.+.+++.+++.++|++|||+|++..++.++++++++ |+++.+|...+ ..++++...  +..+++++.|+....  ..
T Consensus       223 ~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~--~~  299 (352)
T 3fpc_A          223 IVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPG--GR  299 (352)
T ss_dssp             HHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCC--HH
T ss_pred             HHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCCCCceecchhHhhhhccccEEEEeeccC--ch
Confidence            9999999999889999999999976899999999999 99999998764 344444332  334788998875321  24


Q ss_pred             CCHHHHHHHHhCCCCCCCCceEEEee-cccHHHHHHHHcCCCe--eEEEEeC
Q 025336          206 SDLPILLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLKQPDC--VKVLITI  254 (254)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~--~k~vi~~  254 (254)
                      ++++++++++++|+++++++++++|+ |+++++||+.+.+++.  +|+||++
T Consensus       300 ~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~  351 (352)
T 3fpc_A          300 LRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL  351 (352)
T ss_dssp             HHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEEC
T ss_pred             hHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            56899999999999998889999999 9999999999987543  6999975

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=8.4e-41  Score=277.79  Aligned_cols=243  Identities=21%  Similarity=0.278  Sum_probs=212.1

Q ss_pred             CCCCCcccccCCceeeeee----------------------------ccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++.+|++ ||+|++..                            .+|+|+||+++|+..++++|+ +++++|+++ .
T Consensus        87 vG~~v~~~~v-GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~-~  163 (363)
T 3m6i_A           87 VHPSVKSIKV-GDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAML-E  163 (363)
T ss_dssp             ECTTCCSCCT-TCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHH-H
T ss_pred             ECCCCCCCCC-CCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhh-h
Confidence            3788899999 99998531                            459999999999999999999 999999988 5


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCC--CCCchHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDD--EPNKSIS  130 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~  130 (254)
                      ++.|||+++ +..++++|++|||+|+|++|++++|+||.+|+++|++++++++++++++++ ++.++++..  .+.+++.
T Consensus       164 ~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~  241 (363)
T 3m6i_A          164 PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESA  241 (363)
T ss_dssp             HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHH
T ss_pred             HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHH
Confidence            889999998 789999999999999999999999999999995599999999999999999 655554431  0136788


Q ss_pred             HHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHH
Q 025336          131 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPI  210 (254)
Q Consensus       131 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  210 (254)
                      +.+++.+++.++|++|||+|++..+..++++++++ |+++.+|.... ...++...++.+++++.|+...    .+++++
T Consensus       242 ~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~----~~~~~~  315 (363)
T 3m6i_A          242 KKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGKN-EIQIPFMRASVREVDLQFQYRY----CNTWPR  315 (363)
T ss_dssp             HHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCCS-CCCCCHHHHHHHTCEEEECCSC----SSCHHH
T ss_pred             HHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCCC-CccccHHHHHhcCcEEEEccCC----HHHHHH
Confidence            89999998889999999999987889999999999 99999998665 4557777888899999998643    578999


Q ss_pred             HHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCC-Ce-eEEEEeC
Q 025336          211 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP-DC-VKVLITI  254 (254)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~-~k~vi~~  254 (254)
                      +++++++|+++++++++++|||+++++||+.+.++ .. +|+||+.
T Consensus       316 ~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~  361 (363)
T 3m6i_A          316 AIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQS  361 (363)
T ss_dssp             HHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEEC
T ss_pred             HHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEec
Confidence            99999999998899999999999999999999886 33 6999874

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=1.7e-40  Score=274.42  Aligned_cols=243  Identities=22%  Similarity=0.327  Sum_probs=214.6

Q ss_pred             CCCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++.+|++ ||+|++..                           .+|+|+||+++|++.++++|+++++++|+++ .+
T Consensus        76 vG~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~  153 (348)
T 2d8a_A           76 IGPGVEGIEV-GDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQ-EP  153 (348)
T ss_dssp             ECTTCCSCCT-TCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTH-HH
T ss_pred             ECCCCCcCCC-CCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhh-hH
Confidence            3788889999 99998642                           3499999999999999999999999999988 48


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.|||+++ ++.++ +|++|||+|+|++|++++|+++.+|+.+|+++++++++.++++++|+++++++++   +++.+.+
T Consensus       154 ~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~v  228 (348)
T 2d8a_A          154 LGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE---EDVVKEV  228 (348)
T ss_dssp             HHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTT---SCHHHHH
T ss_pred             HHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCC---cCHHHHH
Confidence            88999998 78889 9999999999999999999999999878999999999999999999999999987   8899999


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccH-HHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNV-IALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      ++.+++.++|++|||+|.+..+..++++++++ |+++.+|.... ..++++ ..++.+++++.|+....  ..+++++++
T Consensus       229 ~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~  304 (348)
T 2d8a_A          229 MDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPG-KVTIDFNNLIIFKALTIYGITGRH--LWETWYTVS  304 (348)
T ss_dssp             HHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSS-CCCCCHHHHTTTTTCEEEECCCCC--SHHHHHHHH
T ss_pred             HHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC-CcccCchHHHHhCCcEEEEecCCC--cHHHHHHHH
Confidence            99888779999999999866889999999999 99999998665 456666 66777999999976432  145689999


Q ss_pred             HHHhCCCCCCCCceEEEee-cccHHHHHHHHcCCCeeEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +++++|+++++++++++|| |+++++||+.+.++..+|+||++
T Consensus       305 ~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi~~  347 (348)
T 2d8a_A          305 RLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFML  347 (348)
T ss_dssp             HHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEEEC
T ss_pred             HHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEEee
Confidence            9999999988999999999 99999999999875557999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4e-40  Score=272.57  Aligned_cols=242  Identities=21%  Similarity=0.356  Sum_probs=211.1

Q ss_pred             CCCCCcccccCCceeeeee----------------------------ccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++.+|++ ||+|++..                            ..|+|+||+++|++.++++|+++++++|+++ .
T Consensus        75 vG~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~  152 (352)
T 1e3j_A           75 VGKNVKHLKK-GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-E  152 (352)
T ss_dssp             ECTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-H
T ss_pred             eCCCCCCCCC-CCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-c
Confidence            3778889999 99997531                            2599999999999999999999999999876 6


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      ++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++++++  ..++.+.
T Consensus       153 ~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~~~~~  228 (352)
T 1e3j_A          153 PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDP--AKEEESS  228 (352)
T ss_dssp             HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCT--TTSCHHH
T ss_pred             hHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCcc--cccHHHH
Confidence            889999998 78899999999999999999999999999999 7999999999999999999999998762  1456677


Q ss_pred             HHHhhC---CCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHH
Q 025336          133 VKGITH---GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLP  209 (254)
Q Consensus       133 i~~~~~---~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~  209 (254)
                      +.+.++   +.++|++||++|.+..+..++++++++ |+++.+|.... ..++++..++.+++++.|+...    ..+++
T Consensus       229 i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~----~~~~~  302 (352)
T 1e3j_A          229 IIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQ-MVTVPLVNACAREIDIKSVFRY----CNDYP  302 (352)
T ss_dssp             HHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSS-CCCCCHHHHHTTTCEEEECCSC----SSCHH
T ss_pred             HHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC-CccccHHHHHhcCcEEEEeccc----hHHHH
Confidence            777765   568999999999876789999999999 99999997543 4566777788899999997632    46799


Q ss_pred             HHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCC--eeEEEEeC
Q 025336          210 ILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD--CVKVLITI  254 (254)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~k~vi~~  254 (254)
                      ++++++++|+++++++++++|||+++++||+.+.+++  .+|+||++
T Consensus       303 ~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~  349 (352)
T 1e3j_A          303 IALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISC  349 (352)
T ss_dssp             HHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEEC
T ss_pred             HHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEec
Confidence            9999999999988899999999999999999998775  46999875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.5e-40  Score=272.64  Aligned_cols=238  Identities=22%  Similarity=0.336  Sum_probs=211.8

Q ss_pred             CCCCCcccccCCceeee----------------------------eeccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYH----------------------------IFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~----------------------------~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++..|++ ||+|..                            +..+|+|+||+++|++.++++|+++++++|+++++
T Consensus        72 vG~~v~~~~v-GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  150 (340)
T 3s2e_A           72 VGSGVSRVKE-GDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILC  150 (340)
T ss_dssp             ECSSCCSCCT-TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGT
T ss_pred             ECCCCCcCCC-CCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccc
Confidence            3788889999 999931                            22359999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      ++.|||+++ ...++++|++|||+|+|++|++++|++|.+|+ +|+++++++++.++++++|+++++++++   .++.+.
T Consensus       151 ~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~~~~~  225 (340)
T 3s2e_A          151 AGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARD---TDPAAW  225 (340)
T ss_dssp             HHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTT---SCHHHH
T ss_pred             hhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCC---cCHHHH
Confidence            999999998 67899999999999999999999999999999 9999999999999999999999999988   888888


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      +++ +.+ ++|++||++|....++.++++++++ |+++.+|...+ ..+++...++.+++++.|+...   ..+++++++
T Consensus       226 ~~~-~~g-~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~  298 (340)
T 3s2e_A          226 LQK-EIG-GAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPG-DFGTPIFDVVLKGITIRGSIVG---TRSDLQESL  298 (340)
T ss_dssp             HHH-HHS-SEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCSS-EEEEEHHHHHHTTCEEEECCSC---CHHHHHHHH
T ss_pred             HHH-hCC-CCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCCC-CCCCCHHHHHhCCeEEEEEecC---CHHHHHHHH
Confidence            888 455 8999999999887899999999999 99999998765 5667777888899999998744   356799999


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++|++++  . .+.+||+++++||+.+.+++. +|+||++
T Consensus       299 ~l~~~g~l~~--~-~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~  338 (340)
T 3s2e_A          299 DFAAHGDVKA--T-VSTAKLDDVNDVFGRLREGKVEGRVVLDF  338 (340)
T ss_dssp             HHHHTTSCCC--C-EEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHhCCCCc--e-EEEEeHHHHHHHHHHHHcCCCceEEEEec
Confidence            9999999664  3 467899999999999998887 6999975

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-40  Score=275.36  Aligned_cols=237  Identities=19%  Similarity=0.282  Sum_probs=207.7

Q ss_pred             CCCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccc---cc
Q 025336            1 MLDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHAS---FL   50 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa---~~   50 (254)
                      +|+++.+|++ ||+|+++.                           ..|+|+||+++|++.++++|+++++++|+   .+
T Consensus        88 vG~~v~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l  166 (359)
T 1h2b_A           88 VAEGVEGLEK-GDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPL  166 (359)
T ss_dssp             ECTTCCSCCT-TCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGG
T ss_pred             ECCCCCCCCC-CCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccch
Confidence            3788889999 99997542                           35999999999999999999999999998   78


Q ss_pred             cchhhhhhHHHHHh-cCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCch
Q 025336           51 SCGFTTGFGAAWKE-AEVEKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS  128 (254)
Q Consensus        51 ~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~  128 (254)
                      ++++.|||+++... .++++|++|||+|+|++|++++|+||.+ |+ +|++++++++++++++++|+++++|+++   + 
T Consensus       167 ~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~-  241 (359)
T 1h2b_A          167 ADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAERLGADHVVDARR---D-  241 (359)
T ss_dssp             GTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHHTTCSEEEETTS---C-
T ss_pred             hhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHhCCCEEEeccc---h-
Confidence            88899999998654 8999999999999999999999999999 99 8999999999999999999999999987   6 


Q ss_pred             HHHHHHHhhCCCCccEEEEcCCChh--HHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCC
Q 025336          129 ISELVKGITHGMGVDYCFECTGVPS--LLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKS  206 (254)
Q Consensus       129 ~~~~i~~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  206 (254)
                      +.+.+++++++.++|++|||+|++.  .+..++++  ++ |+++.+|...+ . +++...++.+++++.|+...   ..+
T Consensus       242 ~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~g~~~~-~-~~~~~~~~~~~~~i~g~~~~---~~~  313 (359)
T 1h2b_A          242 PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIVGYGGE-L-RFPTIRVISSEVSFEGSLVG---NYV  313 (359)
T ss_dssp             HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEECCCSSC-C-CCCHHHHHHTTCEEEECCSC---CHH
T ss_pred             HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEEeCCCC-C-CCCHHHHHhCCcEEEEecCC---CHH
Confidence            8888888887778999999999986  67788777  88 99999998654 3 67777777899999998643   246


Q ss_pred             CHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          207 DLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++++++++|+++  +.+ ++|||+++++||+.+.+++. +|+||++
T Consensus       314 ~~~~~~~l~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          314 ELHELVTLALQGKVR--VEV-DIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             HHHHHHHHHHTTSCC--CCE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             HHHHHHHHHHcCCCc--ceE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence            799999999999954  557 89999999999999998876 6999875

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=3.2e-40  Score=272.48  Aligned_cols=240  Identities=20%  Similarity=0.297  Sum_probs=210.1

Q ss_pred             CCCCCcccccCCceeeeee--------------------------------ccCcceeeEEec-CCceEEcCCCCCcccc
Q 025336            1 MLDGTSRMSVRGQKLYHIF--------------------------------SCSTWSEYMVID-ANYVVRVDPSIDLSHA   47 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~--------------------------------~~g~~a~~~~v~-~~~v~~~p~~~~~~~a   47 (254)
                      +|+++.+|++ ||+|++..                                .+|+|+||+++| +..++++|+ ++++++
T Consensus        71 vG~~v~~~~v-GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~a  148 (345)
T 3jv7_A           71 LGEGVTGFGV-GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAA  148 (345)
T ss_dssp             ECTTCCSCCT-TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHH
T ss_pred             ECCCCCCCCC-CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHh
Confidence            3788889999 99997531                                359999999999 899999999 999999


Q ss_pred             ccccchhhhhhHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC
Q 025336           48 SFLSCGFTTGFGAAWK-EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        48 a~~~~~~~ta~~~l~~-~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                      +.++++++|||+++.. ...+++|++|||+|+|++|++++|+||.+|..+|+++++++++.++++++|++++++++    
T Consensus       149 a~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~----  224 (345)
T 3jv7_A          149 APLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG----  224 (345)
T ss_dssp             GGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECS----
T ss_pred             hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCC----
Confidence            9999999999999965 34899999999999999999999999999544999999999999999999999999876    


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKS  206 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  206 (254)
                      +++.+.+++++++.++|++|||+|++..++.++++++++ |+++.+|...+...+++. .++.+++++.|+...   ..+
T Consensus       225 ~~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~---~~~  299 (345)
T 3jv7_A          225 AGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWG---TRS  299 (345)
T ss_dssp             TTHHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTTCCEEEST-TTSCTTCEEECCCSC---CHH
T ss_pred             CcHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecC---CHH
Confidence            578888999998889999999999987899999999999 999999987653455554 666799999998744   356


Q ss_pred             CHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          207 DLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++++++++|++++   ++++|+++++++||+.+.+++. +|+||++
T Consensus       300 ~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          300 ELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             HHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             HHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            7999999999999765   3579999999999999988877 6999875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=4.1e-40  Score=271.58  Aligned_cols=242  Identities=24%  Similarity=0.327  Sum_probs=213.2

Q ss_pred             CCCCCcccccCCceeeee---------------------------eccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++.+|++ ||+|++.                           ...|+|+||+++|++.++++|+++++++|+++ .+
T Consensus        72 vG~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~  149 (343)
T 2dq4_A           72 VGPGVRRPQV-GDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EP  149 (343)
T ss_dssp             ECTTCCSSCT-TCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HH
T ss_pred             ECCCCCcCCC-CCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hH
Confidence            3788889999 9999863                           13589999999999999999999999999987 67


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +.|||+++....++ +|++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++ +++++++++   +++.+.+
T Consensus       150 ~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~---~~~~~~~  224 (343)
T 2dq4_A          150 FGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLE---EDLLEVV  224 (343)
T ss_dssp             HHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTT---SCHHHHH
T ss_pred             HHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCc---cCHHHHH
Confidence            88999998548889 999999999999999999999999987799999999999999999 999999987   7889999


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccH-HHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNV-IALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      ++.+ +.++|++||++|.+..++.++++++++ |+++.+|.... ..+++. ..++.+++++.|+....  ..+++++++
T Consensus       225 ~~~~-~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~  299 (343)
T 2dq4_A          225 RRVT-GSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSD-PIRFDLAGELVMRGITAFGIAGRR--LWQTWMQGT  299 (343)
T ss_dssp             HHHH-SSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSS-CEEECHHHHTGGGTCEEEECCSCC--TTHHHHHHH
T ss_pred             HHhc-CCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC-CceeCcHHHHHhCceEEEEeecCC--CHHHHHHHH
Confidence            9888 669999999999966889999999999 99999998654 456777 67777999999986431  246799999


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      +++++|+++++++++++||++++++||+.+.+++.+|+||++
T Consensus       300 ~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~  341 (343)
T 2dq4_A          300 ALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDP  341 (343)
T ss_dssp             HHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEET
T ss_pred             HHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEee
Confidence            999999988899999999999999999999877668999874

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.4e-40  Score=274.13  Aligned_cols=242  Identities=20%  Similarity=0.299  Sum_probs=206.1

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      +|+++. |++ ||+|+++...|+|+||+++|+..++++|+++++++|++++++++|||+++.+..++++|++|||+|+ |
T Consensus        93 vG~~v~-~~v-GDrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg  170 (342)
T 4eye_A           93 APEGSG-IKP-GDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAG  170 (342)
T ss_dssp             CCTTSS-CCT-TCEEEEECSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTS
T ss_pred             ECCCCC-CCC-CCEEEEecCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence            477788 999 9999998778999999999999999999999999999999999999999988899999999999997 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      ++|++++|+++..|+ +|+++++++++.+.++++|++.+++++    +++.+.+++.+++.++|++|||+|++ .+..++
T Consensus       171 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~----~~~~~~v~~~~~~~g~Dvvid~~g~~-~~~~~~  244 (342)
T 4eye_A          171 GIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLE----EGWAKAVREATGGAGVDMVVDPIGGP-AFDDAV  244 (342)
T ss_dssp             HHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEESS----TTHHHHHHHHTTTSCEEEEEESCC---CHHHHH
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc----hhHHHHHHHHhCCCCceEEEECCchh-HHHHHH
Confidence            999999999999999 999999999999999999999998876    67888899998888999999999987 789999


Q ss_pred             HHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC------CCCCHHHHHHHHhCCCCCCCCceEEEeecc
Q 025336          160 ETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK------TKSDLPILLDKCKNKEFKLHQLLTHHVKLE  233 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                      ++++++ |+++.+|...+....++...++.+++++.|+..+.+.      ..+.++++++++++|   +++.++++||++
T Consensus       245 ~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g---l~~~i~~~~~l~  320 (342)
T 4eye_A          245 RTLASE-GRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG---MRPPVSARIPLS  320 (342)
T ss_dssp             HTEEEE-EEEEEC----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT---CCCCEEEEEEGG
T ss_pred             HhhcCC-CEEEEEEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC---CCCCcceEEeHH
Confidence            999999 9999999766533344555567799999998754321      124588899999999   567788999999


Q ss_pred             cHHHHHHHHcCCCe-eEEEEeC
Q 025336          234 EIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       234 ~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++||+.+.+++. +|+||++
T Consensus       321 ~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          321 EGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             GHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHhCCCCceEEEeC
Confidence            99999999998887 5999975

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=6.6e-40  Score=271.05  Aligned_cols=241  Identities=25%  Similarity=0.328  Sum_probs=214.8

Q ss_pred             CCCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++..|++ ||+|+..                            ..+|+|+||+.+|+..++++|+++++++|+++++
T Consensus        69 vG~~V~~~~~-GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~  147 (348)
T 4eez_A           69 IGADVSSLQV-GDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITC  147 (348)
T ss_dssp             ECTTCCSCCT-TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHH
T ss_pred             ECceeeeccc-CCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhccc
Confidence            3788999999 9999632                            1238999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      +++|||+++ +..++++|++|||+|+|++|.+++|+++.++..+|++++++++|.++++++|+++++|+++   .++.+.
T Consensus       148 ~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~---~~~~~~  223 (348)
T 4eez_A          148 AGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD---VNPVDE  223 (348)
T ss_dssp             HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C---CCHHHH
T ss_pred             ceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC---CCHHHH
Confidence            999999998 6788999999999999999999999999775549999999999999999999999999998   899999


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      +++.+++.++|.++|+++++..+..++++++++ |+++.+|.... ..+++...++.+++++.|+..+   ...++++++
T Consensus       224 v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~gs~~~---~~~~~~~~~  298 (348)
T 4eez_A          224 IKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPNT-EMTLSVPTVVFDGVEVAGSLVG---TRLDLAEAF  298 (348)
T ss_dssp             HHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCSC-EEEECHHHHHHSCCEEEECCSC---CHHHHHHHH
T ss_pred             hhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccCC-CCccCHHHHHhCCeEEEEEecC---CHHHHHHHH
Confidence            999999999999999999988899999999999 99999998765 5667777888899999998754   356799999


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++|+++  +.+ ++|||+++++||+.+++++. +|+||++
T Consensus       299 ~l~~~g~i~--p~~-~~~~l~~~~~A~~~l~~g~~~GKvVl~~  338 (348)
T 4eez_A          299 QFGAEGKVK--PIV-ATRKLEEINDIIDEMKAGKIEGRMVIDF  338 (348)
T ss_dssp             HHHHTTSCC--CCE-EEECGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             HHHHcCCCE--EEE-EEEeHHHHHHHHHHHHCCCCccEEEEEc
Confidence            999999964  444 68999999999999999887 5999985

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=6.8e-40  Score=269.39  Aligned_cols=244  Identities=20%  Similarity=0.247  Sum_probs=214.9

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEec-CCceEEcCCCCCccc---cccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVID-ANYVVRVDPSIDLSH---ASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~-~~~v~~~p~~~~~~~---aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +|+++.+|++ ||+|+++. +|+|+||+++| +..++++|+++++++   +++++++++|||+++.+..++++|++|||+
T Consensus        78 vG~~v~~~~~-GdrV~~~~-~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~  155 (334)
T 3qwb_A           78 KGKGVTNFEV-GDQVAYIS-NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLF  155 (334)
T ss_dssp             ECTTCCSCCT-TCEEEEEC-SSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEES
T ss_pred             ECCCCCCCCC-CCEEEEee-CCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEE
Confidence            3788999999 99998765 69999999999 999999999999999   888889999999999777899999999999


Q ss_pred             c-CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHH
Q 025336           77 G-LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  155 (254)
Q Consensus        77 G-~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  155 (254)
                      | +|++|++++|+++..|+ +|+++++++++.+.++++|++.++++++   .++.+.+.+.+++.++|++|||+|.. .+
T Consensus       156 Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~---~~~~~~~~~~~~~~g~D~vid~~g~~-~~  230 (334)
T 3qwb_A          156 AAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASK---EDILRQVLKFTNGKGVDASFDSVGKD-TF  230 (334)
T ss_dssp             STTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEECCGGG-GH
T ss_pred             CCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCCC---chHHHHHHHHhCCCCceEEEECCChH-HH
Confidence            8 59999999999999999 9999999999999999999999999988   88999999999888999999999985 78


Q ss_pred             HHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC-CC----CHHHHHHHHhCCCCCCCCceEEEe
Q 025336          156 SEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT-KS----DLPILLDKCKNKEFKLHQLLTHHV  230 (254)
Q Consensus       156 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                      +.++++++++ |+++.+|...+...+++...+..+++++.++....+.. ..    .++++++++++|++++  .++++|
T Consensus       231 ~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~  307 (334)
T 3qwb_A          231 EISLAALKRK-GVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNI--KIYKTY  307 (334)
T ss_dssp             HHHHHHEEEE-EEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCC--CEEEEE
T ss_pred             HHHHHHhccC-CEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccC--ceeeEE
Confidence            9999999999 99999998765334566667777999999876544322 22    2468899999999654  488899


Q ss_pred             ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          231 KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       231 ~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      |++++++||+.+.+++. +|+||++
T Consensus       308 ~l~~~~~A~~~~~~~~~~gKvvi~~  332 (334)
T 3qwb_A          308 PLRDYRTAAADIESRKTVGKLVLEI  332 (334)
T ss_dssp             EGGGHHHHHHHHHTTCCCBEEEEEC
T ss_pred             cHHHHHHHHHHHHhCCCceEEEEec
Confidence            99999999999998877 6999975

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=4.8e-40  Score=272.14  Aligned_cols=247  Identities=17%  Similarity=0.237  Sum_probs=212.1

Q ss_pred             CCCCC-cccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-
Q 025336            1 MLDGT-SRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-   78 (254)
Q Consensus         1 ~g~~~-~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-   78 (254)
                      +|+++ .+|++ ||+|+++...|+|+||+++|+..++++|+++++++|++++++++|||+++.+..++++|++|||+|+ 
T Consensus        94 vG~~v~~~~~v-GdrV~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~  172 (354)
T 2j8z_A           94 LGPGCQGHWKI-GDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGL  172 (354)
T ss_dssp             ECSCC--CCCT-TCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTT
T ss_pred             ECCCcCCCCCC-CCEEEEecCCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence            37788 89999 9999988777999999999999999999999999999999999999999978899999999999985 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      |++|++++|+++..|+ +|+++++++++.+.++++|++.++++.+   .++.+.+.+.+++.++|++|||+|++ .+..+
T Consensus       173 ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~  247 (354)
T 2j8z_A          173 SGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKK---EDFSEATLKFTKGAGVNLILDCIGGS-YWEKN  247 (354)
T ss_dssp             SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCGG-GHHHH
T ss_pred             cHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC---hHHHHHHHHHhcCCCceEEEECCCch-HHHHH
Confidence            9999999999999999 9999999999999999999999999887   78888898888777899999999997 78999


Q ss_pred             HHHcccCCcEEEEEccCCCceeeccH-HHHHhCCCEEEeeecCCCCCC-------CCHHHHHHHHhCC-CCCCCCceEEE
Q 025336          159 LETTKVGKGKVIVIGVGVDTMVPLNV-IALACGGRTLKGTTFGGIKTK-------SDLPILLDKCKNK-EFKLHQLLTHH  229 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~  229 (254)
                      +++++++ |+++.+|...+...+++. ..++.+++++.|+........       ..++++++++++| ++++++.++++
T Consensus       248 ~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~  326 (354)
T 2j8z_A          248 VNCLALD-GRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRI  326 (354)
T ss_dssp             HHHEEEE-EEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEE
T ss_pred             HHhccCC-CEEEEEeccCCCccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceE
Confidence            9999999 999999986653345666 667779999999875432210       0123577888999 44477889999


Q ss_pred             eecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          230 VKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       230 ~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      |||+++++||+.+.+++. +|+||++
T Consensus       327 ~~l~~~~~A~~~~~~~~~~gKvvv~~  352 (354)
T 2j8z_A          327 YPVTEIQEAHKYMEANKNIGKIVLEL  352 (354)
T ss_dssp             EEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             EcHHHHHHHHHHHHhCCCCceEEEec
Confidence            999999999999988765 6999874

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=8.7e-40  Score=267.75  Aligned_cols=245  Identities=20%  Similarity=0.216  Sum_probs=212.3

Q ss_pred             CCCCCcccccCCceeeeee-ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEc-C
Q 025336            1 MLDGTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG-L   78 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~   78 (254)
                      +|+++.+|++ ||+|+... ..|+|+||+++|++.++++|+++++++|+++++.++|||+++.+..++++|++|||+| +
T Consensus        72 vG~~v~~~~~-GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~  150 (325)
T 3jyn_A           72 VGDEVTRFKV-GDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAA  150 (325)
T ss_dssp             ECTTCCSCCT-TCEEEESSSSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTT
T ss_pred             ECCCCCCCCC-CCEEEEecCCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            3788899999 99998654 4699999999999999999999999999999999999999998888999999999998 5


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      |++|++++|+++..|+ +|+++++++++.+.++++|+++++++++   .++.+.+.+.+++.++|++|||+|++ .+..+
T Consensus       151 g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~  225 (325)
T 3jyn_A          151 GGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSH---EDVAKRVLELTDGKKCPVVYDGVGQD-TWLTS  225 (325)
T ss_dssp             SHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTCCEEEEEESSCGG-GHHHH
T ss_pred             cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHhCCCCceEEEECCChH-HHHHH
Confidence            9999999999999999 9999999999999999999999999988   88999999999888999999999985 78999


Q ss_pred             HHHcccCCcEEEEEccCCCceeeccHHHHHhC-CCEEEeeecCCCC-CCCC----HHHHHHHHhCCCCCCCCceEEEeec
Q 025336          159 LETTKVGKGKVIVIGVGVDTMVPLNVIALACG-GRTLKGTTFGGIK-TKSD----LPILLDKCKNKEFKLHQLLTHHVKL  232 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  232 (254)
                      +++++++ |+++.+|...+...+++...+..+ ++.+.+...+.+. ..++    ++++++++++|++++.  ++++||+
T Consensus       226 ~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l  302 (325)
T 3jyn_A          226 LDSVAPR-GLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVD--GIEQYAL  302 (325)
T ss_dssp             HTTEEEE-EEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEG
T ss_pred             HHHhcCC-CEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcH
Confidence            9999999 999999987653335666666666 6777765433221 2233    3478999999996654  6789999


Q ss_pred             ccHHHHHHHHcCCCe-eEEEEeC
Q 025336          233 EEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       233 ~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++||+.+.+++. +|+||.+
T Consensus       303 ~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          303 KDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             GGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             HHHHHHHHHHHcCCCCceEEEeC
Confidence            999999999998877 5999875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=8.8e-40  Score=269.31  Aligned_cols=244  Identities=17%  Similarity=0.244  Sum_probs=210.0

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      +|+++.+|++ ||+|+++...|+|+||+++|++.++++|+++++++|+++++.++|||+++.+..++++|++|||+|+ |
T Consensus        77 vG~~v~~~~v-GdrV~~~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g  155 (340)
T 3gms_A           77 VGAFVSRELI-GKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGS  155 (340)
T ss_dssp             ECTTSCGGGT-TCEEEECSSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTS
T ss_pred             eCCCCCCCCC-CCEEEecCCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCcc
Confidence            3788999999 9999988788999999999999999999999999999999999999999988999999999999997 6


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      ++|++++|+++..|+ +|+++++++++.+.++++|+++++++++   .++.+.+.+.+++.++|++|||+|++ .....+
T Consensus       156 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~  230 (340)
T 3gms_A          156 AIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTST---APLYETVMELTNGIGADAAIDSIGGP-DGNELA  230 (340)
T ss_dssp             HHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCHH-HHHHHH
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCCc---ccHHHHHHHHhCCCCCcEEEECCCCh-hHHHHH
Confidence            999999999999999 9999999999999999999999999988   88999999999888999999999987 456777


Q ss_pred             HHcccCCcEEEEEccCCCceeeccHHHHH-hCCCEEEeeecCCCC-------CCCCHHHHHHHHhCCCCCCCCceEEEee
Q 025336          160 ETTKVGKGKVIVIGVGVDTMVPLNVIALA-CGGRTLKGTTFGGIK-------TKSDLPILLDKCKNKEFKLHQLLTHHVK  231 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (254)
                      ++++++ |+++.+|...+.  .++...+. ..++.+.......+.       ..++++++++++++|++++.. ++++||
T Consensus       231 ~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~  306 (340)
T 3gms_A          231 FSLRPN-GHFLTIGLLSGI--QVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYE  306 (340)
T ss_dssp             HTEEEE-EEEEECCCTTSC--CCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEE
T ss_pred             HHhcCC-CEEEEEeecCCC--CCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEe
Confidence            999999 999999987652  23333333 245555554322110       135688999999999987754 678999


Q ss_pred             cccHHHHHHHHcCCC-e-eEEEEeC
Q 025336          232 LEEIDKAIQLLKQPD-C-VKVLITI  254 (254)
Q Consensus       232 ~~~~~~a~~~~~~~~-~-~k~vi~~  254 (254)
                      ++++++||+.+.+++ . +|++|++
T Consensus       307 l~~~~~A~~~~~~~~~~~GKvvl~~  331 (340)
T 3gms_A          307 LADVKAAVDVVQSAEKTKGKVFLTS  331 (340)
T ss_dssp             GGGHHHHHHHHHCTTCCSSEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            999999999999887 4 7999974

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.1e-39  Score=278.44  Aligned_cols=245  Identities=18%  Similarity=0.192  Sum_probs=211.7

Q ss_pred             CCCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++..|++ ||+|++..                           ..|+|+||+++|+..++++|+++++++|++++++
T Consensus       132 vG~~v~~~~v-GdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~  210 (456)
T 3krt_A          132 TGPGVNAWQA-GDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLV  210 (456)
T ss_dssp             ECTTCCSCCT-TCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHH
T ss_pred             ECCCCCCCCC-CCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechHHeeECCCCCCHHHHHHhhhH
Confidence            3788899999 99998632                           1399999999999999999999999999999999


Q ss_pred             hhhhhHHHHHh--cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC----
Q 025336           54 FTTGFGAAWKE--AEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN----  126 (254)
Q Consensus        54 ~~ta~~~l~~~--~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~----  126 (254)
                      ++|||+++...  .++++|++|||+|+ |++|++++|+|+..|+ +|++++++++++++++++|++.++++.+.+.    
T Consensus       211 ~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~  289 (456)
T 3krt_A          211 NSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWK  289 (456)
T ss_dssp             HHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEE
T ss_pred             HHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccc
Confidence            99999998654  78999999999997 9999999999999999 8999989999999999999999999876110    


Q ss_pred             ----------chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEe
Q 025336          127 ----------KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKG  196 (254)
Q Consensus       127 ----------~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g  196 (254)
                                ..+.+.+++++++.++|++|||+|++ .+..++++++++ |+++.+|...+...+++...++.+++++.|
T Consensus       290 ~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g  367 (456)
T 3krt_A          290 DENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE-TFGASVFVTRKG-GTITTCASTSGYMHEYDNRYLWMSLKRIIG  367 (456)
T ss_dssp             ETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHH-HHHHHHHHEEEE-EEEEESCCTTCSEEEEEHHHHHHTTCEEEE
T ss_pred             cccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCch-hHHHHHHHhhCC-cEEEEEecCCCcccccCHHHHHhcCeEEEE
Confidence                      12347888888888999999999995 899999999999 999999987664556677777889999999


Q ss_pred             eecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          197 TTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +....   ..++.++++++++|++  ++.++++|||+++++||+.+.+++. +|+||.+
T Consensus       368 ~~~~~---~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~  421 (456)
T 3krt_A          368 SHFAN---YREAWEANRLIAKGRI--HPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLC  421 (456)
T ss_dssp             CCSCC---HHHHHHHHHHHHTTSS--CCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEES
T ss_pred             eccCC---HHHHHHHHHHHHcCCc--ccceeEEEcHHHHHHHHHHHHhCCCCCcEEEEe
Confidence            87543   3457789999999995  5778899999999999999988777 6998863

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.9e-39  Score=267.55  Aligned_cols=242  Identities=19%  Similarity=0.304  Sum_probs=211.6

Q ss_pred             CCCCCcccccCCceee-------e--------------------eeccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLY-------H--------------------IFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~-------~--------------------~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++.+|++ ||+|+       +                    +..+|+|+||+++|++.++++|+++++++|++++++
T Consensus        72 vG~~v~~~~v-GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~  150 (343)
T 2eih_A           72 VGPGVEGFAP-GDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLT  150 (343)
T ss_dssp             ECSSCCSCCT-TCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHH
T ss_pred             ECCCCCCCCC-CCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhh
Confidence            3788889999 99998       3                    333599999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      +.|||+++....+++++++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|++.++++++   .++.+.
T Consensus       151 ~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~---~~~~~~  226 (343)
T 2eih_A          151 FLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTH---PDWPKE  226 (343)
T ss_dssp             HHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTS---TTHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCCc---ccHHHH
Confidence            9999999966679999999999997 9999999999999999 9999999999999999999999999887   778888


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      +.+.+++.++|++||++|.. .+..++++++++ |+++.+|...+...++++..++.+++++.|+...   ..+++++++
T Consensus       227 ~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~  301 (343)
T 2eih_A          227 VRRLTGGKGADKVVDHTGAL-YFEGVIKATANG-GRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMA---SKSRLFPIL  301 (343)
T ss_dssp             HHHHTTTTCEEEEEESSCSS-SHHHHHHHEEEE-EEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSC---CGGGHHHHH
T ss_pred             HHHHhCCCCceEEEECCCHH-HHHHHHHhhccC-CEEEEEecCCCCcCccCHHHHHhCCcEEEEecCc---cHHHHHHHH
Confidence            88888766899999999954 789999999999 9999999876532345666677799999997632   357799999


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++|++  ++.++++|||+++++||+.+.+++. +|+||++
T Consensus       302 ~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          302 RFVEEGKL--KPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             HHHHHTSS--CCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             HHHHcCCC--CCceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence            99999995  5678899999999999999988765 6999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.4e-38  Score=261.88  Aligned_cols=238  Identities=21%  Similarity=0.353  Sum_probs=208.8

Q ss_pred             CCCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++.+|++ ||+|+..                            ..+|+|+||+++|+..++++|+++++++|+++++
T Consensus        70 vG~~v~~~~v-GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~  148 (339)
T 1rjw_A           70 VGPGVTHLKV-GDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFC  148 (339)
T ss_dssp             ECTTCCSCCT-TCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGT
T ss_pred             ECCCCCcCCC-CCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhh
Confidence            3778889999 9999742                            1248999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      +++|||+++. ..++++|++|||+|+|++|++++|+++..|+ +|+++++++++.+.++++|++.++++++   +++.+.
T Consensus       149 ~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~---~~~~~~  223 (339)
T 1rjw_A          149 AGVTTYKALK-VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLK---EDAAKF  223 (339)
T ss_dssp             HHHHHHHHHH-HHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTT---SCHHHH
T ss_pred             hHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCC---ccHHHH
Confidence            9999999985 4589999999999998899999999999999 9999999999999999999999999887   788888


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHH
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILL  212 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  212 (254)
                      +++.+ + ++|++||++|.+..+..++++++++ |+++.+|...+ ..++++..++.+++++.|+...   ..+++++++
T Consensus       224 ~~~~~-~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~  296 (339)
T 1rjw_A          224 MKEKV-G-GVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE-EMPIPIFDTVLNGIKIIGSIVG---TRKDLQEAL  296 (339)
T ss_dssp             HHHHH-S-SEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS-EEEEEHHHHHHTTCEEEECCSC---CHHHHHHHH
T ss_pred             HHHHh-C-CCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCC-CCccCHHHHHhCCcEEEEeccC---CHHHHHHHH
Confidence            88877 4 8999999999866899999999999 99999998765 4667777777899999997643   246789999


Q ss_pred             HHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          213 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++|++++  . +++|||+++++||+.+.+++. +|+||++
T Consensus       297 ~l~~~g~l~~--~-~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (339)
T 1rjw_A          297 QFAAEGKVKT--I-IEVQPLEKINEVFDRMLKGQINGRVVLTL  336 (339)
T ss_dssp             HHHHTTSCCC--C-EEEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             HHHHcCCCCc--c-EEEEcHHHHHHHHHHHHcCCCceEEEEec
Confidence            9999999654  3 468999999999999988865 6999874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=2.7e-39  Score=272.09  Aligned_cols=235  Identities=20%  Similarity=0.335  Sum_probs=206.6

Q ss_pred             CCCC------cccccCCceeeee---------------------------eccCcceeeEEecCCceEEcCCCCCc----
Q 025336            2 LDGT------SRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVRVDPSIDL----   44 (254)
Q Consensus         2 g~~~------~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~----   44 (254)
                      |+++      ..|++ ||+|++.                           ...|+|+||+++|+..++++|+.+++    
T Consensus       107 G~~v~~~~~~~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~  185 (404)
T 3ip1_A          107 GPEAINRRTNKRFEI-GEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGD  185 (404)
T ss_dssp             CTTCEETTTTEECCT-TCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTBCTH
T ss_pred             CCCccccccCCCCCC-CCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEeccccccccccc
Confidence            6677      78999 9999853                           23599999999999999999998864    


Q ss_pred             --cccccccchhhhhhHHHHHhc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCC
Q 025336           45 --SHASFLSCGFTTGFGAAWKEA-EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP  121 (254)
Q Consensus        45 --~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~  121 (254)
                        .++++++.+++|||+++.... ++++|++|||+|+|++|++++|+||.+|+.+|+++++++++.++++++|+++++++
T Consensus       186 ~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~  265 (404)
T 3ip1_A          186 RLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDP  265 (404)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECT
T ss_pred             cchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcC
Confidence              458888899999999986554 89999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhhCCCCccEEEEcCCCh-hHHHHHHHHc----ccCCcEEEEEccCCCceeeccHHHHHhCCCEEEe
Q 025336          122 DDEPNKSISELVKGITHGMGVDYCFECTGVP-SLLSEALETT----KVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKG  196 (254)
Q Consensus       122 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l----~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g  196 (254)
                      ++   .++.+.+++++++.++|++|||+|++ ..+..+++++    +++ |+++.+|...+ ..+++...++.+++++.|
T Consensus       266 ~~---~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g  340 (404)
T 3ip1_A          266 TK---ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-ATVAIVARADA-KIPLTGEVFQVRRAQIVG  340 (404)
T ss_dssp             TT---SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-CEEEECSCCCS-CEEECHHHHHHTTCEEEE
T ss_pred             CC---CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-cEEEEeCCCCC-CCcccHHHHhccceEEEE
Confidence            88   89999999999988999999999997 3566777777    999 99999998776 457778888889999999


Q ss_pred             eecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCC
Q 025336          197 TTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP  245 (254)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  245 (254)
                      +....  ...+++++++++++| +++.++++++|||+++++||+.+..+
T Consensus       341 ~~~~~--~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~~G  386 (404)
T 3ip1_A          341 SQGHS--GHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTD  386 (404)
T ss_dssp             CCCCC--STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTTTC
T ss_pred             ecCCC--chHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHhCC
Confidence            86422  246799999999999 88999999999999999999999854

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-39  Score=271.14  Aligned_cols=223  Identities=28%  Similarity=0.366  Sum_probs=196.3

Q ss_pred             cCcceeeEEe-cCCceEEcCCCCCcc-ccccccchhhhhhHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeE
Q 025336           21 CSTWSEYMVI-DANYVVRVDPSIDLS-HASFLSCGFTTGFGAAWKEAE-VEKGSSVAVLGLGTVGLGAVDGARMQGAAKI   97 (254)
Q Consensus        21 ~g~~a~~~~v-~~~~v~~~p~~~~~~-~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v   97 (254)
                      .|+|+||+++ |++.++++|++++++ +|++++ +++|||+++ ...+ +++|++|||+|+|++|++++|+||.+|+.+|
T Consensus       146 ~G~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~V  223 (380)
T 1vj0_A          146 RGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENV  223 (380)
T ss_dssp             CSSSBSEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEE
T ss_pred             CccccceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceE
Confidence            5999999999 999999999999999 777665 999999998 6788 9999999999999999999999999994399


Q ss_pred             EEEcCCcccHHHHHhcCCceEeCCC---CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336           98 IGIDKNPWKKEKGEAFGMTDFINPD---DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus        98 ~~v~~~~~~~~~~~~~g~~~v~~~~---~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ++++++++++++++++|++++++++   +   .++.+.+++.+++.++|++|||+|.+..+..++++++++ |+++.+|.
T Consensus       224 i~~~~~~~~~~~~~~lGa~~vi~~~~~~~---~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~  299 (380)
T 1vj0_A          224 IVIAGSPNRLKLAEEIGADLTLNRRETSV---EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGV  299 (380)
T ss_dssp             EEEESCHHHHHHHHHTTCSEEEETTTSCH---HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCC
T ss_pred             EEEcCCHHHHHHHHHcCCcEEEeccccCc---chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEec
Confidence            9999999999999999999999987   6   788889999988778999999999866889999999999 99999998


Q ss_pred             CC-CceeeccHHH-HHhCCCEEEeeecCCCCCCCCHHHHHHHHhC--CCCCCCCceEEEeecccHHHHHHHHcCCCeeEE
Q 025336          175 GV-DTMVPLNVIA-LACGGRTLKGTTFGGIKTKSDLPILLDKCKN--KEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKV  250 (254)
Q Consensus       175 ~~-~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~  250 (254)
                      .. +...++++.. ++.+++++.|+...   ..++++++++++++  |++  ++.++++|||+++++||+.+.+++..|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~Kv  374 (380)
T 1vj0_A          300 AVPQDPVPFKVYEWLVLKNATFKGIWVS---DTSHFVKTVSITSRNYQLL--SKLITHRLPLKEANKALELMESREALKV  374 (380)
T ss_dssp             CSCCCCEEECHHHHTTTTTCEEEECCCC---CHHHHHHHHHHHHTCHHHH--GGGCCEEEEGGGHHHHHHHHHHTSCSCE
T ss_pred             CCCCCCeeEchHHHHHhCCeEEEEeecC---CHHHHHHHHHHHHhhcCCe--eeEEEEEEeHHHHHHHHHHHhcCCCceE
Confidence            76 4245677777 77799999998654   24679999999999  985  6778889999999999999876654499


Q ss_pred             EEeC
Q 025336          251 LITI  254 (254)
Q Consensus       251 vi~~  254 (254)
                      ||++
T Consensus       375 vl~~  378 (380)
T 1vj0_A          375 ILYP  378 (380)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=1.2e-39  Score=273.70  Aligned_cols=244  Identities=18%  Similarity=0.210  Sum_probs=210.9

Q ss_pred             CCCCCcccccCCceeeeee--------------------------------------ccCcceeeEEecCC--ceEEcCC
Q 025336            1 MLDGTSRMSVRGQKLYHIF--------------------------------------SCSTWSEYMVIDAN--YVVRVDP   40 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~--------------------------------------~~g~~a~~~~v~~~--~v~~~p~   40 (254)
                      +|+++.+|++ ||+|++..                                      ..|+|+||+++|++  .++++|+
T Consensus        75 vG~~v~~~~v-GDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~  153 (398)
T 2dph_A           75 KGSDVELMDI-GDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGD  153 (398)
T ss_dssp             ECTTCCSCCT-TCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSS
T ss_pred             ECCCCCCCCC-CCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCC
Confidence            3778888999 99997421                                      24899999999987  8999999


Q ss_pred             CCCccc----cccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc
Q 025336           41 SIDLSH----ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT  116 (254)
Q Consensus        41 ~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~  116 (254)
                      ++++++    +++++++++|||+++ ...++++|++|||+|+|++|++++|+||.+|+++|++++++++++++++++|++
T Consensus       154 ~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~  232 (398)
T 2dph_A          154 KEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE  232 (398)
T ss_dssp             HHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE
T ss_pred             CCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc
Confidence            999998    888999999999998 789999999999999999999999999999987899999999999999999996


Q ss_pred             eEeCCCCCCCchH-HHHHHHhhCCCCccEEEEcCCChh--------------HHHHHHHHcccCCcEEEEEccCC-----
Q 025336          117 DFINPDDEPNKSI-SELVKGITHGMGVDYCFECTGVPS--------------LLSEALETTKVGKGKVIVIGVGV-----  176 (254)
Q Consensus       117 ~v~~~~~~~~~~~-~~~i~~~~~~~~~d~v~d~~g~~~--------------~~~~~~~~l~~~~G~~v~~g~~~-----  176 (254)
                       ++++++   .++ .+.+++++++.++|++|||+|.+.              .+..++++++++ |+++.+|...     
T Consensus       233 -~i~~~~---~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-G~iv~~G~~~~~~~~  307 (398)
T 2dph_A          233 -TIDLRN---SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGIPGIYVGSDPD  307 (398)
T ss_dssp             -EEETTS---SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE-EEEECCSCCCSCCSS
T ss_pred             -EEcCCC---cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC-CEEEEeccccccccc
Confidence             888876   665 888888888778999999999752              689999999999 9999999762     


Q ss_pred             -------CceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCC--CCCceEEEeecccHHHHHHHHcCCCe
Q 025336          177 -------DTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFK--LHQLLTHHVKLEEIDKAIQLLKQPDC  247 (254)
Q Consensus       177 -------~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~  247 (254)
                             ....++++..++.+++++.|+...   ..++++++++++++|+++  +.++++++|||+++++||+.+.+++.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~~~~~  384 (398)
T 2dph_A          308 PVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP---VTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSP  384 (398)
T ss_dssp             CSSHHHHTTEEEEEHHHHHHTTCEEECSSCC---GGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHHTTCS
T ss_pred             cccccccCCcccccHHHHhhcCCEEEEeccC---cHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHhcCCc
Confidence                   123456666777899999886532   356799999999999987  66678899999999999999988766


Q ss_pred             eEEEEeC
Q 025336          248 VKVLITI  254 (254)
Q Consensus       248 ~k~vi~~  254 (254)
                      +|+||++
T Consensus       385 gKvvv~~  391 (398)
T 2dph_A          385 AKFVIDP  391 (398)
T ss_dssp             CEEEECT
T ss_pred             eEEEEec
Confidence            8999864

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=5.3e-39  Score=265.18  Aligned_cols=241  Identities=18%  Similarity=0.171  Sum_probs=206.7

Q ss_pred             CCCCCcccccCCceeeeee---ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCC------CCC
Q 025336            1 MLDGTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVE------KGS   71 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~------~~~   71 (254)
                      +|+++..|++ ||+|++..   ..|+|+||+++|++.++++|+++++++|++++++++|||+++.+..+++      +|+
T Consensus        74 vG~~v~~~~~-GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~  152 (346)
T 3fbg_A           74 VGNEVTMFNQ-GDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGK  152 (346)
T ss_dssp             ECTTCCSCCT-TCEEEECCCTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTC
T ss_pred             eCCCCCcCCC-CCEEEEcCCCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCC
Confidence            3788899999 99999753   3599999999999999999999999999999999999999998888888      999


Q ss_pred             EEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLG-LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G-~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|||+| +|++|++++|+++..|+ +|+++++++++.++++++|++++++++    +++.+.+++. .++++|++|||+|
T Consensus       153 ~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~----~~~~~~~~~~-~~~g~Dvv~d~~g  226 (346)
T 3fbg_A          153 TLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIVLNHK----ESLLNQFKTQ-GIELVDYVFCTFN  226 (346)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTT----SCHHHHHHHH-TCCCEEEEEESSC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECC----ccHHHHHHHh-CCCCccEEEECCC
Confidence            999995 69999999999999999 999999999999999999999999886    4577888887 5569999999999


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCC---CC------CCCHHHHHHHHhCCCCC
Q 025336          151 VPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI---KT------KSDLPILLDKCKNKEFK  221 (254)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~---~~------~~~~~~~~~~~~~~~~~  221 (254)
                      ++..+..++++++++ |+++.++...   .+++...+..+++++.++.....   ..      .+.++++++++++|+  
T Consensus       227 ~~~~~~~~~~~l~~~-G~iv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--  300 (346)
T 3fbg_A          227 TDMYYDDMIQLVKPR-GHIATIVAFE---NDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNI--  300 (346)
T ss_dssp             HHHHHHHHHHHEEEE-EEEEESSCCS---SCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTS--
T ss_pred             chHHHHHHHHHhccC-CEEEEECCCC---CCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCC--
Confidence            886789999999999 9999887543   23445566678999998653321   00      244788999999999  


Q ss_pred             CCCceEEEe---ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          222 LHQLLTHHV---KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       222 ~~~~~~~~~---~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++.++++|   |++++++||+.+.+++. +|+||++
T Consensus       301 l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~  337 (346)
T 3fbg_A          301 YQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVINL  337 (346)
T ss_dssp             SCCCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EECCccceecCCCHHHHHHHHHHHhcCCcceEEEEec
Confidence            556677787   89999999999999887 6999874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=3.8e-40  Score=272.40  Aligned_cols=243  Identities=12%  Similarity=0.095  Sum_probs=205.1

Q ss_pred             CCCCC-cccccCCceeeeee---ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCC-CEEEE
Q 025336            1 MLDGT-SRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKG-SSVAV   75 (254)
Q Consensus         1 ~g~~~-~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlI   75 (254)
                      +|+++ .+|++ ||+|++..   .+|+|+||+++|+..++++|+++++++|+++++.++|||+++ +..+ +++ ++|||
T Consensus        94 vG~~v~~~~~v-GdrV~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~~vli  170 (349)
T 3pi7_A           94 GGDEPYAKSLV-GKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMF-DIVK-QEGEKAFVM  170 (349)
T ss_dssp             ECSSHHHHHHT-TCEEEEECTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHH-HHHH-HHCCSEEEE
T ss_pred             ECCCccCCCCC-CCEEEEeccCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHH-HHHh-hCCCCEEEE
Confidence            36778 88999 99999764   469999999999999999999999999999999999999655 5666 666 78888


Q ss_pred             Ec-CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           76 LG-LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        76 ~G-~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      +| +|++|++++|+++..|+ +|++++++++++++++++|+++++++++   +++.+.+++.+++.++|++|||+|++ .
T Consensus       171 ~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~v~~~~~~~g~D~vid~~g~~-~  245 (349)
T 3pi7_A          171 TAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKA---PDFEATLREVMKAEQPRIFLDAVTGP-L  245 (349)
T ss_dssp             SSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHTCSEEEETTS---TTHHHHHHHHHHHHCCCEEEESSCHH-H
T ss_pred             eCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCc---HHHHHHHHHHhcCCCCcEEEECCCCh-h
Confidence            85 59999999999999999 9999999999999999999999999988   89999999998877999999999987 5


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCceeeccH-HHHHhCCCEEEeeecCCCCC------CCCHHHHHHHHhCCCCCCCCceE
Q 025336          155 LSEALETTKVGKGKVIVIGVGVDTMVPLNV-IALACGGRTLKGTTFGGIKT------KSDLPILLDKCKNKEFKLHQLLT  227 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
                      +..++++++++ |+++.+|...+....++. ..++.+++++.|++...+..      .+.++++++++++|++  ++.++
T Consensus       246 ~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~  322 (349)
T 3pi7_A          246 ASAIFNAMPKR-ARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRW--STDVT  322 (349)
T ss_dssp             HHHHHHHSCTT-CEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSC--CC-CC
T ss_pred             HHHHHhhhcCC-CEEEEEeccCCCCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCc--ccccc
Confidence            68999999999 999999976653455666 67778999999987543211      2457788889999995  56788


Q ss_pred             EEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          228 HHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      ++|||+++++||+.+.++..+|+||++
T Consensus       323 ~~~~l~~~~~A~~~~~~~~~gKvvl~p  349 (349)
T 3pi7_A          323 AVVPLAEAIAWVPAELTKPNGKVFIRP  349 (349)
T ss_dssp             EEEEHHHHHHHHHHHHTSSSSCEEEEC
T ss_pred             eEEcHHHHHHHHHHHhCCCCceEEEeC
Confidence            999999999999977766667999975

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=1.4e-38  Score=264.95  Aligned_cols=245  Identities=14%  Similarity=0.183  Sum_probs=206.0

Q ss_pred             CCCCCcccccCCceeeeee--------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHh-cCC----
Q 025336            1 MLDGTSRMSVRGQKLYHIF--------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKE-AEV----   67 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~--------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~-~~~----   67 (254)
                      +|+++.+|++ ||+|++..        ..|+|+||+++|+..++++|+++++++|+++++++.|||+++.+. .++    
T Consensus        77 vG~~v~~~~~-GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  155 (371)
T 3gqv_A           77 VGSDVTHIQV-GDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPS  155 (371)
T ss_dssp             ECTTCCSCCT-TCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSS
T ss_pred             eCCCCCCCCC-CCEEEEeccCCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCc
Confidence            3788999999 99999764        259999999999999999999999999999999999999999776 553    


Q ss_pred             -------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           68 -------EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        68 -------~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                             ++|++|||+|+ |++|++++|+||..|+ +|+++. +++++++++++|+++++|+++   +++.+.+++++++
T Consensus       156 ~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~vi~~~~---~~~~~~v~~~t~g  230 (371)
T 3gqv_A          156 ADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKSRGAEEVFDYRA---PNLAQTIRTYTKN  230 (371)
T ss_dssp             CSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS---TTHHHHHHHHTTT
T ss_pred             cccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHHcCCcEEEECCC---chHHHHHHHHccC
Confidence                   89999999998 9999999999999999 899885 889999999999999999998   8999999999988


Q ss_pred             CCccEEEEcCCChhHHHHHHHHc-ccCCcEEEEEccCCC-----ceeec---cHHHHHhCCCEEEeeecCCCCC------
Q 025336          140 MGVDYCFECTGVPSLLSEALETT-KVGKGKVIVIGVGVD-----TMVPL---NVIALACGGRTLKGTTFGGIKT------  204 (254)
Q Consensus       140 ~~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~-----~~~~~---~~~~~~~~~~~i~g~~~~~~~~------  204 (254)
                       ++|++|||+|++..+..+++++ +++ |+++.+|....     .....   ....++.+++++.|+.......      
T Consensus       231 -~~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~  308 (371)
T 3gqv_A          231 -NLRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFG  308 (371)
T ss_dssp             -CCCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHH
T ss_pred             -CccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHH
Confidence             6999999999977899999999 588 99999996442     11221   1234666888888774332111      


Q ss_pred             CCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-e-EEEEe
Q 025336          205 KSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-V-KVLIT  253 (254)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-k~vi~  253 (254)
                      .+.++++++++++|++++.+.+++.|||+++++||+.+.+++. + |+||+
T Consensus       309 ~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~  359 (371)
T 3gqv_A          309 EDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVR  359 (371)
T ss_dssp             HHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred             HHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEE
Confidence            1224578899999999998888888999999999999998876 4 67765

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.5e-38  Score=262.67  Aligned_cols=242  Identities=22%  Similarity=0.292  Sum_probs=207.5

Q ss_pred             CCCCCcccccCCceeeeeec-cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-
Q 025336            1 MLDGTSRMSVRGQKLYHIFS-CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-   78 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~-~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-   78 (254)
                      +|+++..|++ ||+|++... .|+|+||+++|+..++++|+++++++|++++++++|||+++.+..++++|++|||+|+ 
T Consensus       102 vG~~v~~~~v-GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~Gas  180 (351)
T 1yb5_A          102 VGDNASAFKK-GDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGAS  180 (351)
T ss_dssp             ECTTCTTCCT-TCEEEESCCSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCS
T ss_pred             ECCCCCCCCC-CCEEEEeCCCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCC
Confidence            3788899999 999997643 5999999999999999999999999999999999999999977889999999999997 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      |++|++++|+++..|+ +|+++++++++.+.++++|++.++++++   .++.+.+.+.+++.++|++|||+|.+ .+..+
T Consensus       181 ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~G~~-~~~~~  255 (351)
T 1yb5_A          181 GGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHRE---VNYIDKIKKYVGEKGIDIIIEMLANV-NLSKD  255 (351)
T ss_dssp             SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---TTHHHHHHHHHCTTCEEEEEESCHHH-HHHHH
T ss_pred             ChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCC---chHHHHHHHHcCCCCcEEEEECCChH-HHHHH
Confidence            9999999999999999 9999999999999999999999999887   78888888888777899999999986 78999


Q ss_pred             HHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCH----HHHHHHHhCCCCCCCCceEEEeeccc
Q 025336          159 LETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDL----PILLDKCKNKEFKLHQLLTHHVKLEE  234 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (254)
                      +++++++ |+++.+|...  ..+++...++.+++++.|+..... ..+++    +.+.+++.+|+  +++.++++||+++
T Consensus       256 ~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~~~l~~~~~~g~--l~~~i~~~~~l~~  329 (351)
T 1yb5_A          256 LSLLSHG-GRVIVVGSRG--TIEINPRDTMAKESSIIGVTLFSS-TKEEFQQYAAALQAGMEIGW--LKPVIGSQYPLEK  329 (351)
T ss_dssp             HHHEEEE-EEEEECCCCS--CEEECTHHHHTTTCEEEECCGGGC-CHHHHHHHHHHHHHHHHHTC--CCCCEEEEEEGGG
T ss_pred             HHhccCC-CEEEEEecCC--CCccCHHHHHhCCcEEEEEEeecC-CHHHHHHHHHHHHHHHHCCC--ccCccceEEcHHH
Confidence            9999999 9999999653  345566677779999999864322 12233    34555777887  5677889999999


Q ss_pred             HHHHHHH-HcCCCe-eEEEEeC
Q 025336          235 IDKAIQL-LKQPDC-VKVLITI  254 (254)
Q Consensus       235 ~~~a~~~-~~~~~~-~k~vi~~  254 (254)
                      +++||+. +.+++. +|+||++
T Consensus       330 ~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          330 VAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             HHHHHHHHHHSSCCSSEEEEEC
T ss_pred             HHHHHHHHHHhCCCCeEEEEeC
Confidence            9999998 665444 6999975

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=5.7e-39  Score=263.79  Aligned_cols=245  Identities=21%  Similarity=0.277  Sum_probs=211.3

Q ss_pred             CCCCCcccccCCceeeeeec-cCcceeeEEecCCceEEcCCCCCccc--cccccchhhhhhHHHHHhcCCCCCCEEEEEc
Q 025336            1 MLDGTSRMSVRGQKLYHIFS-CSTWSEYMVIDANYVVRVDPSIDLSH--ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG   77 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~-~g~~a~~~~v~~~~v~~~p~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G   77 (254)
                      +|+++.+|++ ||+|+.... .|+|+||+++|++.++++|+++++++  |++++++++|||+++.+..+++++++|||+|
T Consensus        75 vG~~v~~~~~-GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~G  153 (333)
T 1wly_A           75 VGPGVTDFTV-GERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHA  153 (333)
T ss_dssp             ECTTCCSCCT-TCEEEECSSSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETT
T ss_pred             ECCCCCCCCC-CCEEEEecCCCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEEC
Confidence            3788899999 999976543 69999999999999999999999999  9999999999999997788999999999999


Q ss_pred             C-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHH
Q 025336           78 L-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  156 (254)
Q Consensus        78 ~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  156 (254)
                      + |++|++++|+++..|+ +|+++++++++.+.++++|++.++++++   .++.+.+.+.+++.++|++|||+|+. .++
T Consensus       154 a~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~i~~~~~~~~~d~vi~~~g~~-~~~  228 (333)
T 1wly_A          154 AAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYST---QDFAEVVREITGGKGVDVVYDSIGKD-TLQ  228 (333)
T ss_dssp             TTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHHTTCCEEEEEECSCTT-THH
T ss_pred             CccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC---HHHHHHHHHHhCCCCCeEEEECCcHH-HHH
Confidence            6 9999999999999999 9999999999999999999999998887   78888888888777899999999985 789


Q ss_pred             HHHHHcccCCcEEEEEccCCCceeeccHH-HHHhCC--CEEEeeecCCCCC----CCCHHHHHHHHhCCCCCCCCceEEE
Q 025336          157 EALETTKVGKGKVIVIGVGVDTMVPLNVI-ALACGG--RTLKGTTFGGIKT----KSDLPILLDKCKNKEFKLHQLLTHH  229 (254)
Q Consensus       157 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~--~~i~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  229 (254)
                      .++++++++ |+++.+|...+...+++.. .++.++  +++.|+....+..    .+.++++++++++|++  ++.++++
T Consensus       229 ~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~  305 (333)
T 1wly_A          229 KSLDCLRPR-GMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVL--HSSVAKT  305 (333)
T ss_dssp             HHHHTEEEE-EEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSC--CCCEEEE
T ss_pred             HHHHhhccC-CEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCc--CCCcceE
Confidence            999999999 9999999865433456665 666788  9998875421111    1358899999999995  5678899


Q ss_pred             eecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          230 VKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       230 ~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      |||+++++||+.+.+++. +|+||++
T Consensus       306 ~~l~~~~~A~~~~~~~~~~gKvvi~~  331 (333)
T 1wly_A          306 FPLREAAAAHKYMGGRQTIGSIVLLP  331 (333)
T ss_dssp             EEGGGHHHHHHHHHHCSCCSEEEEET
T ss_pred             EeHHHHHHHHHHHHcCCCceEEEEEe
Confidence            999999999999987765 6999874

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=267.70  Aligned_cols=242  Identities=19%  Similarity=0.301  Sum_probs=200.0

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      +|+++.+|++ ||+|+++...|+|+||+++|+..++++|++++++++++++++++|||+++.+..++++|++|||+|+ |
T Consensus        75 vG~~v~~~~~-GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G  153 (349)
T 4a27_A           75 LGDSVKGYEI-GDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGG  153 (349)
T ss_dssp             ECTTCCSCCT-TCEEEEECSSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTS
T ss_pred             eCCCCCCCCC-CCEEEEecCCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            3788899999 9999998878999999999999999999999999999999999999999988899999999999997 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      ++|++++|+|+.+|..+|++++ ++++.+.++ +|++++++ ++   .++.+.+++.+++ ++|++|||+|++ .+..++
T Consensus       154 ~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~-~~---~~~~~~~~~~~~~-g~Dvv~d~~g~~-~~~~~~  225 (349)
T 4a27_A          154 GVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFD-RN---ADYVQEVKRISAE-GVDIVLDCLCGD-NTGKGL  225 (349)
T ss_dssp             HHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE-TT---SCHHHHHHHHCTT-CEEEEEEECC--------C
T ss_pred             HHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc-CC---ccHHHHHHHhcCC-CceEEEECCCch-hHHHHH
Confidence            9999999999999754888885 678888888 99999998 66   8899999988754 999999999987 568999


Q ss_pred             HHcccCCcEEEEEccCCC---c-------------eeeccHHHHHhCCCEEEeeecCCCCC--------CCCHHHHHHHH
Q 025336          160 ETTKVGKGKVIVIGVGVD---T-------------MVPLNVIALACGGRTLKGTTFGGIKT--------KSDLPILLDKC  215 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~---~-------------~~~~~~~~~~~~~~~i~g~~~~~~~~--------~~~~~~~~~~~  215 (254)
                      ++++++ |+++.+|....   .             ...+++..++.++.++.|+....+..        .++++++++++
T Consensus       226 ~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~  304 (349)
T 4a27_A          226 SLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLY  304 (349)
T ss_dssp             TTEEEE-EEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHhhcC-CEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHH
Confidence            999999 99999997542   1             12355666777899999987532110        45688999999


Q ss_pred             hCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          216 KNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++|++  ++.++++||++++++||+.+.+++. +|+||++
T Consensus       305 ~~g~l--~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~  342 (349)
T 4a27_A          305 NQKKI--KPVVDSLWALEEVKEAMQRIHDRGNIGKLILDV  342 (349)
T ss_dssp             HTTSC--CCCEEEEECGGGHHHHHHHHHTTCCSSEEEEET
T ss_pred             HCCCc--cccccceECHHHHHHHHHHHHhCCCCceEEEec
Confidence            99995  6788899999999999999988877 5999975

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=8.7e-39  Score=272.44  Aligned_cols=241  Identities=17%  Similarity=0.176  Sum_probs=209.0

Q ss_pred             CCCCCcccccCCceeeeee---------------------------ccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++.+|++ ||+|++..                           ..|+|+||+++|+..++++|+++++++|++++++
T Consensus       124 vG~~V~~~~v-GDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~  202 (447)
T 4a0s_A          124 TGIGVRRWKP-GDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLC  202 (447)
T ss_dssp             ECTTCCSCCT-TCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHH
T ss_pred             ECCCCCCCCC-CCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHHH
Confidence            3788899999 99998642                           1499999999999999999999999999999999


Q ss_pred             hhhhhHHHHH--hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCch--
Q 025336           54 FTTGFGAAWK--EAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS--  128 (254)
Q Consensus        54 ~~ta~~~l~~--~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~--  128 (254)
                      ++|||+++..  ..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.++++++|++.++++.+   .+  
T Consensus       203 ~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~~~  278 (447)
T 4a0s_A          203 AGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAE---LGIT  278 (447)
T ss_dssp             HHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHH---HTCC
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeccc---cccc
Confidence            9999999864  388999999999997 9999999999999999 8999999999999999999999987654   32  


Q ss_pred             ----------------HHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCC
Q 025336          129 ----------------ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGR  192 (254)
Q Consensus       129 ----------------~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  192 (254)
                                      +.+.+++.+ +.++|++|||+|.+ .+..++++++++ |+++.+|...+....++...++.+++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~v~~~~-g~g~Dvvid~~G~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~  355 (447)
T 4a0s_A          279 DDIADDPRRVVETGRKLAKLVVEKA-GREPDIVFEHTGRV-TFGLSVIVARRG-GTVVTCGSSSGYLHTFDNRYLWMKLK  355 (447)
T ss_dssp             TTGGGCHHHHHHHHHHHHHHHHHHH-SSCCSEEEECSCHH-HHHHHHHHSCTT-CEEEESCCTTCSEEEEEHHHHHHTTC
T ss_pred             ccccccccccchhhhHHHHHHHHHh-CCCceEEEECCCch-HHHHHHHHHhcC-CEEEEEecCCCcccccCHHHHHhCCC
Confidence                            267788888 56999999999986 789999999999 99999998766455667777788999


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          193 TLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       193 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++.|+....   ..++.++++++++|++  ++.++++|||+++++||+.+.+++. +|+||.+
T Consensus       356 ~i~g~~~~~---~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~  413 (447)
T 4a0s_A          356 KIVGSHGAN---HEEQQATNRLFESGAV--VPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLC  413 (447)
T ss_dssp             EEEECCSCC---HHHHHHHHHHHHTTSS--CCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEES
T ss_pred             EEEecCCCC---HHHHHHHHHHHHcCCc--ccceeEEEcHHHHHHHHHHHhcCCCceEEEEEe
Confidence            999987443   3567889999999995  5778899999999999999988777 5998863

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=5.1e-38  Score=258.50  Aligned_cols=238  Identities=18%  Similarity=0.223  Sum_probs=206.8

Q ss_pred             CCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCcccc--ccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CH
Q 025336            4 GTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHA--SFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GT   80 (254)
Q Consensus         4 ~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~   80 (254)
                      ++..|++ ||+|++   .|+|+||+++|++.++++|+++++.++  ++++++++|||+++.+..++++|++|||+|+ |+
T Consensus        86 ~v~~~~v-GdrV~~---~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~  161 (336)
T 4b7c_A           86 KHPGFQA-GDYVNG---ALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGA  161 (336)
T ss_dssp             CSTTCCT-TCEEEE---ECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSH
T ss_pred             CCCCCCC-CCEEec---cCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCH
Confidence            5678999 999985   388999999999999999999988776  7789999999999988999999999999997 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           81 VGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        81 ~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      +|++++|+++..|+ +|+++++++++.+.+ +++|++.++++++   .++.+.+.+.+++ ++|++|||+|++ .+..++
T Consensus       162 iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~-~~d~vi~~~g~~-~~~~~~  235 (336)
T 4b7c_A          162 VGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKN---EDLAAGLKRECPK-GIDVFFDNVGGE-ILDTVL  235 (336)
T ss_dssp             HHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTT---SCHHHHHHHHCTT-CEEEEEESSCHH-HHHHHH
T ss_pred             HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCC---HHHHHHHHHhcCC-CceEEEECCCcc-hHHHHH
Confidence            99999999999999 999999999999999 8999999999988   8899999998854 999999999985 789999


Q ss_pred             HHcccCCcEEEEEccCCC------ceeeccHHHHHhCCCEEEeeecCCCCC--CCCHHHHHHHHhCCCCCCCCceEEEee
Q 025336          160 ETTKVGKGKVIVIGVGVD------TMVPLNVIALACGGRTLKGTTFGGIKT--KSDLPILLDKCKNKEFKLHQLLTHHVK  231 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (254)
                      ++++++ |+++.+|....      ...+++...++.+++++.|+....+..  .+.++++++++++|++++.  +...+|
T Consensus       236 ~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~  312 (336)
T 4b7c_A          236 TRIAFK-ARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSR--EDIVEG  312 (336)
T ss_dssp             TTEEEE-EEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCC--EEEEEC
T ss_pred             HHHhhC-CEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccc--eeeecC
Confidence            999999 99999997652      123556667778999999987654321  2568899999999996655  445689


Q ss_pred             cccHHHHHHHHcCCCe-eEEEEeC
Q 025336          232 LEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       232 ~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++||+.+.+++. +|+||++
T Consensus       313 l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          313 LETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             GGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCceEEEeC
Confidence            9999999999998877 5999975

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.1e-38  Score=261.25  Aligned_cols=237  Identities=20%  Similarity=0.227  Sum_probs=205.1

Q ss_pred             CCCCCcccccCCceeeeee-----ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEE
Q 025336            1 MLDGTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAV   75 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI   75 (254)
                      +|+++.+|++ ||+|+++.     .+|+|+||+++|++.++++|+++++++|++++++++|||+++.+..++++|++|||
T Consensus        78 vG~~v~~~~v-GdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  156 (343)
T 3gaz_A           78 VGPEVDSFRV-GDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLI  156 (343)
T ss_dssp             ECTTCCSCCT-TCEEEEECCSSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred             ECCCCCCCCC-CCEEEEEeCCCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEE
Confidence            3788899999 99999765     25999999999999999999999999999999999999999988999999999999


Q ss_pred             Ec-CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           76 LG-LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        76 ~G-~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      +| +|++|++++|+++..|+ +|+++ .++++.++++++|++. ++ ++   .++.+.+.+.+++.++|++|||+|++ .
T Consensus       157 ~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i~-~~---~~~~~~~~~~~~~~g~D~vid~~g~~-~  228 (343)
T 3gaz_A          157 QGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP-ID-AS---REPEDYAAEHTAGQGFDLVYDTLGGP-V  228 (343)
T ss_dssp             ETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-EE-TT---SCHHHHHHHHHTTSCEEEEEESSCTH-H
T ss_pred             ecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-ec-cC---CCHHHHHHHHhcCCCceEEEECCCcH-H
Confidence            99 59999999999999999 99999 8999999999999998 77 55   78888999999888999999999986 7


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCC----C----CCCCHHHHHHHHhCCCCCCCCce
Q 025336          155 LSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI----K----TKSDLPILLDKCKNKEFKLHQLL  226 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~  226 (254)
                      +..++++++++ |+++.+|...    .++...+..+++++.|+.....    .    ..+.++++++++++|++  ++.+
T Consensus       229 ~~~~~~~l~~~-G~iv~~g~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i  301 (343)
T 3gaz_A          229 LDASFSAVKRF-GHVVSCLGWG----THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKL--APRL  301 (343)
T ss_dssp             HHHHHHHEEEE-EEEEESCCCS----CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCC--CCCB
T ss_pred             HHHHHHHHhcC-CeEEEEcccC----ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCc--ccCc
Confidence            89999999999 9999998764    2344556679999999753210    0    12568899999999995  4667


Q ss_pred             E-EEeecccHHHHHHHHcCCCe-----eEEEEe
Q 025336          227 T-HHVKLEEIDKAIQLLKQPDC-----VKVLIT  253 (254)
Q Consensus       227 ~-~~~~~~~~~~a~~~~~~~~~-----~k~vi~  253 (254)
                      + ++||++++++||+.+.+++.     +|+|++
T Consensus       302 ~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~  334 (343)
T 3gaz_A          302 DPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAIT  334 (343)
T ss_dssp             CSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEE
T ss_pred             cCcEecHHHHHHHHHHHHcCCCcccccceEEEE
Confidence            7 68999999999999987754     488876

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.9e-38  Score=260.66  Aligned_cols=235  Identities=20%  Similarity=0.313  Sum_probs=186.9

Q ss_pred             CCCCcccccCCceeeeee---------------------------ccCcceeeEEec-CCceEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVID-ANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~-~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      |++ .+|++ ||+|++..                           .+|+|+||+++| ++.++++ +++++++|+.++++
T Consensus        75 G~~-~~~~~-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~  151 (344)
T 2h6e_A           75 GEL-AKVKK-GDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADA  151 (344)
T ss_dssp             CTT-CCCCT-TCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTH
T ss_pred             CCC-CCCCC-CCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhh
Confidence            566 77888 99986542                           359999999999 9999999 99999999999999


Q ss_pred             hhhhhHHHHHh----cCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc
Q 025336           54 FTTGFGAAWKE----AEVEKGSSVAVLGLGTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        54 ~~ta~~~l~~~----~~~~~~~~vlI~G~g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      ++|||+++...    .++ +|++|||+|+|++|++++|+||.+  |+ +|+++++++++.++++++|+++++++++   .
T Consensus       152 ~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~  226 (344)
T 2h6e_A          152 GTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELGADYVSEMKD---A  226 (344)
T ss_dssp             HHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHTCSEEECHHH---H
T ss_pred             hHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhCCCEEecccc---c
Confidence            99999998544    288 999999999999999999999999  99 8999999999999999999999997652   1


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCC
Q 025336          128 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSD  207 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  207 (254)
                        .+.+.+++++.++|++|||+|.+..++.++++++++ |+++.+|...+ ..+++...++.+++++.|+...   ..++
T Consensus       227 --~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~---~~~~  299 (344)
T 2h6e_A          227 --ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEGK-RVSLEAFDTAVWNKKLLGSNYG---SLND  299 (344)
T ss_dssp             --HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS-CCCCCHHHHHHTTCEEEECCSC---CHHH
T ss_pred             --hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEeCCCCC-CcccCHHHHhhCCcEEEEEecC---CHHH
Confidence              233455666668999999999987889999999999 99999998654 4567777777899999998643   2467


Q ss_pred             HHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          208 LPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++++++|+++  +.+ ++|||+++++||+.+.+++. +|+||++
T Consensus       300 ~~~~~~l~~~g~i~--~~i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          300 LEDVVRLSESGKIK--PYI-IKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             HHHHHHHHHTTSSC--CCE-EEECC----------------CEEEECC
T ss_pred             HHHHHHHHHcCCCC--cce-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            99999999999954  556 89999999999999988876 6999875

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=9e-39  Score=264.89  Aligned_cols=244  Identities=18%  Similarity=0.216  Sum_probs=199.2

Q ss_pred             CCCCCcccccCCceeeeee-ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-
Q 025336            1 MLDGTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-   78 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-   78 (254)
                      +|+++..|++ ||+|++.. +.|+|+||+++|+..++++|+++++++|++++++++|||+++....++++|++|||+|+ 
T Consensus        99 vG~~v~~~~v-GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~  177 (357)
T 1zsy_A           99 VGSNVTGLKP-GDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASN  177 (357)
T ss_dssp             ECTTCCSCCT-TCEEEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTT
T ss_pred             eCCCCCCCCC-CCEEEEcCCCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence            3788889999 99999764 46999999999999999999999999999999999999999977789999999999997 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcc----cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCC-CccEEEEcCCChh
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPW----KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM-GVDYCFECTGVPS  153 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~-~~d~v~d~~g~~~  153 (254)
                      |++|++++|+||.+|+ +++++..+.+    +.++++++|+++++++++   . ..+.+.+.+.+. ++|++|||+|++ 
T Consensus       178 G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~---~-~~~~~~~~~~~~~~~Dvvid~~g~~-  251 (357)
T 1zsy_A          178 SGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAEHVITEEE---L-RRPEMKNFFKDMPQPRLALNCVGGK-  251 (357)
T ss_dssp             SHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHHHTTCSEEEEHHH---H-HSGGGGGTTSSSCCCSEEEESSCHH-
T ss_pred             CHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHHhcCCcEEEecCc---c-hHHHHHHHHhCCCCceEEEECCCcH-
Confidence            9999999999999999 7777655433    467889999999997642   1 123444555443 599999999987 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC-------CCCCHHHHHHHHhCCCCCCCCce
Q 025336          154 LLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK-------TKSDLPILLDKCKNKEFKLHQLL  226 (254)
Q Consensus       154 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  226 (254)
                      ....++++++++ |+++.+|...+....++...++.+++++.|++...+.       ..+.++++++++++|++++  .+
T Consensus       252 ~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~~  328 (357)
T 1zsy_A          252 SSTELLRQLARG-GTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTA--PA  328 (357)
T ss_dssp             HHHHHHTTSCTT-CEEEECCCCTTCCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCC--CC
T ss_pred             HHHHHHHhhCCC-CEEEEEecCCCCCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcC--cc
Confidence            456789999999 9999998654434566677777799999998654221       0234788999999999654  45


Q ss_pred             EEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          227 THHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       227 ~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      .++|||+++++||+.+.+++. +|+||++
T Consensus       329 ~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          329 CSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             EEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             ceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence            589999999999999988775 5999975

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.3e-38  Score=264.83  Aligned_cols=250  Identities=13%  Similarity=0.105  Sum_probs=204.8

Q ss_pred             CCCCCcccccCCceeeeee-ccCcceeeEEecCCceEEcCC-----------CCCccccccccchhhhhhHHHHHhcCCC
Q 025336            1 MLDGTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVRVDP-----------SIDLSHASFLSCGFTTGFGAAWKEAEVE   68 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~v~~~p~-----------~~~~~~aa~~~~~~~ta~~~l~~~~~~~   68 (254)
                      +|+++..|++ ||+|++.. ..|+|+||+++|++.++++|+           ++++++|++++++++|||+++....+++
T Consensus        87 vG~~v~~~~v-GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~  165 (364)
T 1gu7_A           87 VGSNVSSLEA-GDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLT  165 (364)
T ss_dssp             ECTTCCSCCT-TCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCC
T ss_pred             eCCCCCcCCC-CCEEEecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccC
Confidence            3788899999 99999764 459999999999999999998           8999999999999999999997667899


Q ss_pred             CC-CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc----HHHHHhcCCceEeCCCCCCCchHHHHHHHhh--CCC
Q 025336           69 KG-SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK----KEKGEAFGMTDFINPDDEPNKSISELVKGIT--HGM  140 (254)
Q Consensus        69 ~~-~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~----~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~--~~~  140 (254)
                      +| ++|||+|+ |++|++++|+||.+|+ +|++++++.++    .++++++|+++++++++....++.+.+++++  ++.
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~  244 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG  244 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCC
Confidence            99 99999997 9999999999999999 88888766665    6778999999999875200146778888887  556


Q ss_pred             CccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC------CCCHHHHHHH
Q 025336          141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT------KSDLPILLDK  214 (254)
Q Consensus       141 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~  214 (254)
                      ++|++|||+|++.. ..++++++++ |+++.+|...+...+++...++.+++++.|+....+..      .+.+++++++
T Consensus       245 g~Dvvid~~G~~~~-~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l  322 (364)
T 1gu7_A          245 EAKLALNCVGGKSS-TGIARKLNNN-GLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAW  322 (364)
T ss_dssp             CEEEEEESSCHHHH-HHHHHTSCTT-CEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CceEEEECCCchhH-HHHHHHhccC-CEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHH
Confidence            99999999998744 5889999999 99999998654345667777777999999986532211      2458899999


Q ss_pred             HhCCCCCCCCceEEEe-ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          215 CKNKEFKLHQLLTHHV-KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       215 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++|++++.+..+..+ +++++++||+.+.+++. +|+||++
T Consensus       323 ~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          323 YEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             HHHTCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             HHcCCcccccceEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence            9999987765544333 34599999999877755 6999975

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.9e-38  Score=263.67  Aligned_cols=236  Identities=18%  Similarity=0.309  Sum_probs=198.2

Q ss_pred             CCCCCcccccCCceeeee------------------------------------eccCcceeeEEecCCceEEcCCC-CC
Q 025336            1 MLDGTSRMSVRGQKLYHI------------------------------------FSCSTWSEYMVIDANYVVRVDPS-ID   43 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~------------------------------------~~~g~~a~~~~v~~~~v~~~p~~-~~   43 (254)
                      +|+++..|++ ||+|+..                                    ...|+|+||+++|+..++++|++ ++
T Consensus        91 vG~~V~~~~v-GDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls  169 (369)
T 1uuf_A           91 VGDQVEKYAP-GDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQ  169 (369)
T ss_dssp             ECTTCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGG
T ss_pred             ECCCCCCCCC-CCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCC
Confidence            3778889999 9999731                                    22489999999999999999999 99


Q ss_pred             ccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCC
Q 025336           44 LSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDD  123 (254)
Q Consensus        44 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~  123 (254)
                      +++|++++++++|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.++++++
T Consensus       170 ~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi~~~~  247 (369)
T 1uuf_A          170 LAAVAPLLCAGITTYSPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRN  247 (369)
T ss_dssp             HHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTC
T ss_pred             HHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEecccc
Confidence            9999999999999999985 5689999999999999999999999999999 8999999999999999999999999876


Q ss_pred             CCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC
Q 025336          124 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK  203 (254)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  203 (254)
                         .++.+   ++.  .++|++|||+|.+..++.++++++++ |+++.+|...+...+++...++.+++++.|+...   
T Consensus       248 ---~~~~~---~~~--~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~---  315 (369)
T 1uuf_A          248 ---ADEMA---AHL--KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIG---  315 (369)
T ss_dssp             ---HHHHH---TTT--TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC-------CHHHHHTTTCEEEECCSC---
T ss_pred             ---HHHHH---Hhh--cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCCccccCHHHHHhCCcEEEEeecC---
Confidence               55433   333  38999999999876789999999999 9999999865421256666777899999998643   


Q ss_pred             CCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          204 TKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ..++++++++++++|+++  +.+ ++|||+++++||+.+.+++. +|+||++
T Consensus       316 ~~~~~~~~~~l~~~g~i~--~~i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~  364 (369)
T 1uuf_A          316 GIPETQEMLDFCAEHGIV--ADI-EMIRADQINEAYERMLRGDVKYRFVIDN  364 (369)
T ss_dssp             CHHHHHHHHHHHHHHTCC--CCE-EEECGGGHHHHHHHHHTTCSSSEEEEEG
T ss_pred             CHHHHHHHHHHHHhCCCC--cce-EEEcHHHHHHHHHHHHcCCCceEEEEec
Confidence            245689999999999965  445 47999999999999988775 6999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-37  Score=256.22  Aligned_cols=241  Identities=20%  Similarity=0.241  Sum_probs=209.0

Q ss_pred             CCCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++..|++ ||+|+..                            ..+|+|+||+++|+..++++|+++++++|+++++
T Consensus        75 vG~~v~~~~~-GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  153 (347)
T 2hcy_A           75 MGENVKGWKI-GDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILC  153 (347)
T ss_dssp             ECTTCCSCCT-TCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGT
T ss_pred             ECCCCCCCcC-CCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhh
Confidence            3778888999 9999742                            1258999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISE  131 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  131 (254)
                      +++|||+++ .+.++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+  .+++.+
T Consensus       154 ~~~ta~~~l-~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~  229 (347)
T 2hcy_A          154 AGITVYKAL-KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFIDFTK--EKDIVG  229 (347)
T ss_dssp             HHHHHHHHH-HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEEEETTT--CSCHHH
T ss_pred             hHHHHHHHH-HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceEEecCc--cHhHHH
Confidence            999999998 4568999999999997 9999999999999999 9999999999999999999998888762  167888


Q ss_pred             HHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHH
Q 025336          132 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPIL  211 (254)
Q Consensus       132 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~  211 (254)
                      .+++.+.+ ++|++||++|.+..+..++++++++ |+++.+|...+...++++..++.+++++.|+...   ..++++++
T Consensus       230 ~~~~~~~~-~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~  304 (347)
T 2hcy_A          230 AVLKATDG-GAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVG---NRADTREA  304 (347)
T ss_dssp             HHHHHHTS-CEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCC---CHHHHHHH
T ss_pred             HHHHHhCC-CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCC---CHHHHHHH
Confidence            88888877 9999999999866889999999999 9999999876445667777788899999998643   24678999


Q ss_pred             HHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          212 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++++++|++++  . +++|||+++++||+.+.+++. +|+||++
T Consensus       305 ~~l~~~g~l~~--~-~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  345 (347)
T 2hcy_A          305 LDFFARGLVKS--P-IKVVGLSTLPEIYEKMEKGQIVGRYVVDT  345 (347)
T ss_dssp             HHHHHTTSCCC--C-EEEEEGGGHHHHHHHHHTTCCSSEEEEES
T ss_pred             HHHHHhCCCcc--c-eEEEcHHHHHHHHHHHHcCCcceeEEEec
Confidence            99999999654  3 468999999999999988865 6999874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-38  Score=266.92  Aligned_cols=244  Identities=18%  Similarity=0.205  Sum_probs=205.2

Q ss_pred             CCCCCcccccCCceeeee-------------------------------------eccCcceeeEEecCC--ceEEcCCC
Q 025336            1 MLDGTSRMSVRGQKLYHI-------------------------------------FSCSTWSEYMVIDAN--YVVRVDPS   41 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~-------------------------------------~~~g~~a~~~~v~~~--~v~~~p~~   41 (254)
                      +|+++.+|++ ||+|+..                                     ...|+|+||+++|+.  .++++|++
T Consensus        76 vG~~v~~~~v-GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~  154 (398)
T 1kol_A           76 KGRDVENLQI-GDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDR  154 (398)
T ss_dssp             ECTTCCSCCT-TCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCH
T ss_pred             ECCCCCcCCC-CCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCC
Confidence            3788889999 9999731                                     124899999999986  89999999


Q ss_pred             CCccc----cccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce
Q 025336           42 IDLSH----ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD  117 (254)
Q Consensus        42 ~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~  117 (254)
                      +++++    ++++++++.|||+++ ...++++|++|||+|+|++|++++|+||.+|+++|++++++++++++++++|++ 
T Consensus       155 ~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-  232 (398)
T 1kol_A          155 DKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-  232 (398)
T ss_dssp             HHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-
T ss_pred             cchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc-
Confidence            99888    788889999999999 488999999999999999999999999999997799999999999999999997 


Q ss_pred             EeCCCCCCCch-HHHHHHHhhCCCCccEEEEcCCCh---------------hHHHHHHHHcccCCcEEEEEccC-CCc--
Q 025336          118 FINPDDEPNKS-ISELVKGITHGMGVDYCFECTGVP---------------SLLSEALETTKVGKGKVIVIGVG-VDT--  178 (254)
Q Consensus       118 v~~~~~~~~~~-~~~~i~~~~~~~~~d~v~d~~g~~---------------~~~~~~~~~l~~~~G~~v~~g~~-~~~--  178 (254)
                      ++++++   .+ +.+.+++++++.++|++|||+|.+               ..+..++++++++ |+++.+|.. .+.  
T Consensus       233 ~i~~~~---~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~  308 (398)
T 1kol_A          233 IADLSL---DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPG  308 (398)
T ss_dssp             EEETTS---SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTT
T ss_pred             EEccCC---cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC-CEEEEeccccCCccc
Confidence            778765   44 788899988877999999999975               2689999999999 999999975 211  


Q ss_pred             ---------eeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCC-CCCceEEEeecccHHHHHHHHcCCCee
Q 025336          179 ---------MVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFK-LHQLLTHHVKLEEIDKAIQLLKQPDCV  248 (254)
Q Consensus       179 ---------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~  248 (254)
                               ..+++...++.+++++.++...   ..++++++++++.+|+++ ..++++++|||+++++||+.+.+++.+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~~~~~g  385 (398)
T 1kol_A          309 AVDAAAKIGSLSIRFGLGWAKSHSFHTGQTP---VMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPK  385 (398)
T ss_dssp             CSSHHHHTTCCCCCHHHHHHTTCEEEESSCC---HHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHHHTCSC
T ss_pred             ccccccccccccccHHHHhhcccEEEecccC---hHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHhCCCce
Confidence                     2455666677799999876421   234578899999999976 345678899999999999999877668


Q ss_pred             EEEEeC
Q 025336          249 KVLITI  254 (254)
Q Consensus       249 k~vi~~  254 (254)
                      |+||++
T Consensus       386 Kvvi~~  391 (398)
T 1kol_A          386 KFVIDP  391 (398)
T ss_dssp             EEEECT
T ss_pred             EEEEEe
Confidence            999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-38  Score=260.37  Aligned_cols=244  Identities=18%  Similarity=0.183  Sum_probs=208.4

Q ss_pred             CCCCCcccccCCceeeeee--ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC
Q 025336            1 MLDGTSRMSVRGQKLYHIF--SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL   78 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~--~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~   78 (254)
                      +|+++.+|++ ||+| ++.  .+|+|+||+++|+..++++|+++++++|++++++++|||+++.+..++++|++|||+|+
T Consensus        72 vG~~v~~~~~-GdrV-~~~g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga  149 (327)
T 1qor_A           72 VGSGVKHIKA-GDRV-VYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA  149 (327)
T ss_dssp             ECTTCCSCCT-TCEE-EESCCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             ECCCCCCCCC-CCEE-EECCCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC
Confidence            3788899999 9999 443  35999999999999999999999999999999999999999977889999999999985


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHH
Q 025336           79 -GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  157 (254)
Q Consensus        79 -g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  157 (254)
                       |++|++++|+++..|+ +|+++++++++.+.++++|++.++++.+   .++.+.+.+.+.+.++|++|||+|. ..++.
T Consensus       150 ~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~  224 (327)
T 1qor_A          150 AGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYRE---EDLVERLKEITGGKKVRVVYDSVGR-DTWER  224 (327)
T ss_dssp             TBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTCCEEEEEECSCG-GGHHH
T ss_pred             CCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC---ccHHHHHHHHhCCCCceEEEECCch-HHHHH
Confidence             9999999999999999 9999999999999999999999999887   7888888888877689999999995 48899


Q ss_pred             HHHHcccCCcEEEEEccCCCceeeccHHHHHhC-CCEEEeeecCCCC-----CCCCHHHHHHHHhCCCCCCCCceE--EE
Q 025336          158 ALETTKVGKGKVIVIGVGVDTMVPLNVIALACG-GRTLKGTTFGGIK-----TKSDLPILLDKCKNKEFKLHQLLT--HH  229 (254)
Q Consensus       158 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~  229 (254)
                      ++++++++ |+++.+|...+...+++...++.+ ++++.+...+.+.     ..+.++++++++++|+++  +.++  ++
T Consensus       225 ~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~  301 (327)
T 1qor_A          225 SLDCLQRR-GLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIK--VDVAEQQK  301 (327)
T ss_dssp             HHHTEEEE-EEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSC--CCCCGGGE
T ss_pred             HHHHhcCC-CEEEEEecCCCCCCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCcc--cccccCcE
Confidence            99999999 999999987653344666666667 8888765432111     123478899999999954  5677  89


Q ss_pred             eecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          230 VKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       230 ~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      |||+++++||+.+.+++. +|+||++
T Consensus       302 ~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          302 YPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             EEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             EcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            999999999999988765 6999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=3.9e-38  Score=260.24  Aligned_cols=231  Identities=23%  Similarity=0.339  Sum_probs=198.0

Q ss_pred             CCCCCcccccCCceeeeee---------------------------c----------cCcceeeEEecCCceEEcCCCCC
Q 025336            1 MLDGTSRMSVRGQKLYHIF---------------------------S----------CSTWSEYMVIDANYVVRVDPSID   43 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---------------------------~----------~g~~a~~~~v~~~~v~~~p~~~~   43 (254)
                      +|+++.+|++ ||+|+...                           .          .|+|+||+++|++.++++|++++
T Consensus        73 vG~~v~~~~v-GdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~  151 (348)
T 3two_A           73 VGKGVKKFKI-GDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAP  151 (348)
T ss_dssp             ECTTCCSCCT-TCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSC
T ss_pred             ECCCCCCCCC-CCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCC
Confidence            3788889999 99996421                           1          19999999999999999999999


Q ss_pred             ccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCC
Q 025336           44 LSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDD  123 (254)
Q Consensus        44 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~  123 (254)
                      +++|+.+++++.|||+++ .+.++++|++|||+|+|++|++++|+||.+|+ +|+++++++++.++++++|+++++ .+ 
T Consensus       152 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~~-  227 (348)
T 3two_A          152 LEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-TD-  227 (348)
T ss_dssp             HHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-SS-
T ss_pred             HHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-CC-
Confidence            999999999999999998 46699999999999999999999999999999 999999999999999999999988 32 


Q ss_pred             CCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC-CceeeccHHHHH-hCCCEEEeeecCC
Q 025336          124 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV-DTMVPLNVIALA-CGGRTLKGTTFGG  201 (254)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~-~~~~~i~g~~~~~  201 (254)
                         .+.      + .. ++|++|||+|++..+..++++++++ |+++.+|... .....++...++ .+++++.|+..+.
T Consensus       228 ---~~~------~-~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  295 (348)
T 3two_A          228 ---PKQ------C-KE-ELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGG  295 (348)
T ss_dssp             ---GGG------C-CS-CEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCC
T ss_pred             ---HHH------H-hc-CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCC
Confidence               221      1 11 8999999999986789999999999 9999999877 422226666766 8999999987543


Q ss_pred             CCCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          202 IKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                         .++++++++++++|++++  .+ ++||++++++||+.+.+++. +|+||++
T Consensus       296 ---~~~~~~~~~l~~~g~l~~--~~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~  343 (348)
T 3two_A          296 ---IKETQEMVDFSIKHNIYP--EI-DLILGKDIDTAYHNLTHGKAKFRYVIDM  343 (348)
T ss_dssp             ---HHHHHHHHHHHHHTTCCC--CE-EEECGGGHHHHHHHHHTTCCCSEEEEEG
T ss_pred             ---HHHHHHHHHHHHhCCCCc--eE-EEEEHHHHHHHHHHHHcCCCceEEEEec
Confidence               467999999999999655  34 79999999999999998887 6999874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=2.3e-38  Score=262.78  Aligned_cols=240  Identities=17%  Similarity=0.196  Sum_probs=204.6

Q ss_pred             CCCCCcccccCCceeeeee---ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCC-----CCCE
Q 025336            1 MLDGTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVE-----KGSS   72 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-----~~~~   72 (254)
                      +|+++..|++ ||+|++..   ..|+|+||+++|+..++++|+++++++|++++++++|||+++.+..+++     +|++
T Consensus        96 vG~~v~~~~v-GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~  174 (363)
T 4dvj_A           96 VGPDVTLFRP-GDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPA  174 (363)
T ss_dssp             ECTTCCSCCT-TCEEEECCCTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEE
T ss_pred             eCCCCCCCCC-CCEEEEccCCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCE
Confidence            3788899999 99998653   3599999999999999999999999999999999999999998888888     8999


Q ss_pred             EEEEc-CCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           73 VAVLG-LGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        73 vlI~G-~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      |||+| +|++|++++|+||.+ |+ +|+++++++++.++++++|++++++++    +++.+.++++ .+.++|++|||+|
T Consensus       175 VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~~~lGad~vi~~~----~~~~~~v~~~-~~~g~Dvvid~~g  248 (363)
T 4dvj_A          175 ILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWVKSLGAHHVIDHS----KPLAAEVAAL-GLGAPAFVFSTTH  248 (363)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHHHTTCSEEECTT----SCHHHHHHTT-CSCCEEEEEECSC
T ss_pred             EEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC----CCHHHHHHHh-cCCCceEEEECCC
Confidence            99998 599999999999985 77 999999999999999999999999986    4677888887 4459999999999


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCC-----CC----CCCHHHHHHHHhCCCCC
Q 025336          151 VPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI-----KT----KSDLPILLDKCKNKEFK  221 (254)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-----~~----~~~~~~~~~~~~~~~~~  221 (254)
                      ++..++.++++++++ |+++.+|..    .+++...+..+++++.++.....     ..    .+.++++++++++|+++
T Consensus       249 ~~~~~~~~~~~l~~~-G~iv~~g~~----~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~  323 (363)
T 4dvj_A          249 TDKHAAEIADLIAPQ-GRFCLIDDP----SAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLR  323 (363)
T ss_dssp             HHHHHHHHHHHSCTT-CEEEECSCC----SSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSC
T ss_pred             chhhHHHHHHHhcCC-CEEEEECCC----CccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCee
Confidence            877889999999999 999999653    24455567778999988653221     01    23478899999999954


Q ss_pred             CCCceEEEe---ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          222 LHQLLTHHV---KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       222 ~~~~~~~~~---~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                        +.+++++   |++++++||+.+.+++. +|+||++
T Consensus       324 --~~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~  358 (363)
T 4dvj_A          324 --TTLTNRLSPINAANLKQAHALVESGTARGKVVIEG  358 (363)
T ss_dssp             --CCEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEEC
T ss_pred             --ccccceecCCCHHHHHHHHHHHHhCCCceEEEEeC
Confidence              5666666   99999999999988877 5999975

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.8e-37  Score=256.25  Aligned_cols=240  Identities=21%  Similarity=0.287  Sum_probs=209.5

Q ss_pred             CCCCCcccccCCceeeeee---------------------------ccCcceeeEEecC-CceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDA-NYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~-~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++.+|++ ||+|++..                           .+|+|+||+++|+ ..++++ +++++++|+.+++
T Consensus        77 vG~~v~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~  154 (347)
T 1jvb_A           77 VGDEVVGYSK-GDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTC  154 (347)
T ss_dssp             ECTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGT
T ss_pred             ECCCCCCCCC-CCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchh
Confidence            3788889999 99997542                           3589999999999 999999 9999999999999


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSIS  130 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  130 (254)
                      ++.|||+++ .+.+++++++|||+|+ |++|++++|+++.. |+ +|+++++++++.+.++++|++.++++.+   .++.
T Consensus       155 ~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~  229 (347)
T 1jvb_A          155 SGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGADYVINASM---QDPL  229 (347)
T ss_dssp             HHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHH
T ss_pred             hHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCCCEEecCCC---ccHH
Confidence            999999998 5689999999999998 59999999999999 99 8999999999999999999999999887   7788


Q ss_pred             HHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHH
Q 025336          131 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPI  210 (254)
Q Consensus       131 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  210 (254)
                      +.+.+.+...++|++||++|.+..++.++++++++ |+++.+|...... ++++..++.+++++.|+...   ..+++++
T Consensus       230 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~---~~~~~~~  304 (347)
T 1jvb_A          230 AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVG---NQSDFLG  304 (347)
T ss_dssp             HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSC---CHHHHHH
T ss_pred             HHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCCC-CCCHHHHHhCceEEEEEecc---CHHHHHH
Confidence            88888776238999999999887889999999999 9999999876223 67777777799999998643   2467899


Q ss_pred             HHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          211 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++++++|++  ++.++++|||+++++||+.+.+++. +|+||++
T Consensus       305 ~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          305 IMRLAEAGKV--KPMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             HHHHHHTTSS--CCCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHcCCC--CceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            9999999995  5678889999999999999988876 6999875

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=8.8e-38  Score=258.85  Aligned_cols=234  Identities=22%  Similarity=0.379  Sum_probs=199.0

Q ss_pred             CCCCCcccccCCceeeee-----------------------------------eccCcceeeEEecCCceEEcCCCCCcc
Q 025336            1 MLDGTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVRVDPSIDLS   45 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~   45 (254)
                      +|+++.+|++ ||+|+..                                   ...|+|+||+++|+..++++|++++++
T Consensus        78 vG~~v~~~~v-GdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~  156 (357)
T 2cf5_A           78 VGSDVSKFTV-GDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVE  156 (357)
T ss_dssp             ECSSCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHH
T ss_pred             ECCCCCCCCC-CCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHH
Confidence            3788889999 9999631                                   135999999999999999999999999


Q ss_pred             ccccccchhhhhhHHHHHhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceEeCCCC
Q 025336           46 HASFLSCGFTTGFGAAWKEAEVE-KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDFINPDD  123 (254)
Q Consensus        46 ~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v~~~~~  123 (254)
                      ++++++++++|||+++ .+.+++ +|++|||+|+|++|++++|+||.+|+ +|+++++++++.+.++ ++|+++++++++
T Consensus       157 ~aa~l~~~~~ta~~~l-~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~  234 (357)
T 2cf5_A          157 QAAPLLCAGVTVYSPL-SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADDYVIGSD  234 (357)
T ss_dssp             HHTGGGTHHHHHHHHH-HHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCEEETTC
T ss_pred             HhhhhhhhHHHHHHHH-HhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCceeecccc
Confidence            9999999999999998 467888 99999999999999999999999999 9999999999999988 899999998875


Q ss_pred             CCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceee-ccHHHHHhCCCEEEeeecCCC
Q 025336          124 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVP-LNVIALACGGRTLKGTTFGGI  202 (254)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~i~g~~~~~~  202 (254)
                         .   +.+++.++  ++|++|||+|.+..++.++++++++ |+++.+|...+ ... ++.. ++.+++++.|+...  
T Consensus       235 ---~---~~~~~~~~--g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~-~~~~~~~i~g~~~~--  301 (357)
T 2cf5_A          235 ---Q---AKMSELAD--SLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINN-PLQFLTPL-LMLGRKVITGSFIG--  301 (357)
T ss_dssp             ---H---HHHHHSTT--TEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSS-CCCCCHHH-HHHHTCEEEECCSC--
T ss_pred             ---H---HHHHHhcC--CCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCC-CccccCHH-HHhCccEEEEEccC--
Confidence               3   34555543  8999999999865689999999999 99999998654 223 5555 77799999998643  


Q ss_pred             CCCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          203 KTKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                       ..++++++++++++|++++  .+ ++||++++++||+.+.+++. +|+||++
T Consensus       302 -~~~~~~~~~~l~~~g~l~~--~~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~  350 (357)
T 2cf5_A          302 -SMKETEEMLEFCKEKGLSS--II-EVVKMDYVNTAFERLEKNDVRYRFVVDV  350 (357)
T ss_dssp             -CHHHHHHHHHHHHHTTCCC--CE-EEEEGGGHHHHHHHHHTTCSSSEEEEET
T ss_pred             -CHHHHHHHHHHHHcCCCCC--ce-EEEeHHHHHHHHHHHHCCCCceEEEEeC
Confidence             2457899999999999654  34 69999999999999988776 6999874

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=8.1e-39  Score=265.15  Aligned_cols=234  Identities=19%  Similarity=0.221  Sum_probs=201.3

Q ss_pred             CCCCcccccCCceeeee--------------------------------eccCcceeeEEecCCceEEcCCCCCcccccc
Q 025336            2 LDGTSRMSVRGQKLYHI--------------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASF   49 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~--------------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~   49 (254)
                      |++ .+|++ ||+|++.                                ..+|+|+||+++|++.++++|++++ ++ ++
T Consensus        72 G~~-~~~~v-GdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~-aa  147 (357)
T 2b5w_A           72 PND-TELEE-GDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-EL-GF  147 (357)
T ss_dssp             CTT-SSCCT-TCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TT-GG
T ss_pred             CCC-CCCCC-CCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hh-hh
Confidence            666 78899 9999753                                1249999999999999999999999 65 45


Q ss_pred             ccchhhhhhHHHHHhcCCCCC------CEEEEEcCCHHHHHH-HHHH-HHcCCCeEEEEcCCcc---cHHHHHhcCCceE
Q 025336           50 LSCGFTTGFGAAWKEAEVEKG------SSVAVLGLGTVGLGA-VDGA-RMQGAAKIIGIDKNPW---KKEKGEAFGMTDF  118 (254)
Q Consensus        50 ~~~~~~ta~~~l~~~~~~~~~------~~vlI~G~g~~G~~~-~~~a-~~~g~~~v~~v~~~~~---~~~~~~~~g~~~v  118 (254)
                      ++.+++|||+++ +..++++|      ++|||+|+|++|+++ +|+| |.+|+++|++++++++   ++++++++|++++
T Consensus       148 l~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v  226 (357)
T 2b5w_A          148 LIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV  226 (357)
T ss_dssp             GHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE
T ss_pred             hhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc
Confidence            778999999998 77889999      999999999999999 9999 9999944999999999   9999999999999


Q ss_pred             eCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHH----HhCCCEE
Q 025336          119 INPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIAL----ACGGRTL  194 (254)
Q Consensus       119 ~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~----~~~~~~i  194 (254)
                       ++++   +++.+ ++++ ++ ++|++|||+|.+..+..++++++++ |+++.+|.......+++...+    +.+++++
T Consensus       227 -~~~~---~~~~~-i~~~-~g-g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i  298 (357)
T 2b5w_A          227 -DSRQ---TPVED-VPDV-YE-QMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSDWAFEVDAGAFHREMVLHNKAL  298 (357)
T ss_dssp             -ETTT---SCGGG-HHHH-SC-CEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCCCCCCCCCHHHHHHHHHHTTCEE
T ss_pred             -CCCc---cCHHH-HHHh-CC-CCCEEEECCCChHHHHHHHHHHhcC-CEEEEEeCCCCCCceecHHHHhHHHHhCCeEE
Confidence             8887   67777 7777 66 9999999999976789999999999 999999987622456666666    7799999


Q ss_pred             EeeecCCCCCCCCHHHHHHHHhCC--CCCCCCceEEEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          195 KGTTFGGIKTKSDLPILLDKCKNK--EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       195 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      .|+...   ..++++++++++++|  ++ ++++++++|||+++++||+.+  +..+|+||++
T Consensus       299 ~g~~~~---~~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l~~~~~A~~~~--~~~gKvvi~~  354 (357)
T 2b5w_A          299 VGSVNS---HVEHFEAATVTFTKLPKWF-LEDLVTGVHPLSEFEAAFDDD--DTTIKTAIEF  354 (357)
T ss_dssp             EECCCC---CHHHHHHHHHHHHHSCHHH-HHHHEEEEEEGGGGGGGGCCS--TTCCEEEEEC
T ss_pred             EEeccC---CHHHHHHHHHHHHhCchhh-hhhhcceeecHHHHHHHHHHh--CCCceEEEEe
Confidence            998643   256799999999999  76 678888999999999999988  4457999874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.9e-38  Score=263.16  Aligned_cols=216  Identities=19%  Similarity=0.287  Sum_probs=186.6

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++. ..++++|++|||+|+|++|++++|+||.+|+ +|+++
T Consensus       132 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~  209 (360)
T 1piw_A          132 QGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLV-RNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVI  209 (360)
T ss_dssp             CCSSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHH-HTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEE
T ss_pred             CCcceeEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHH-HcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            589999999999999999999999999999999999999985 5899999999999999999999999999999 89999


Q ss_pred             cCCcccHHHHHhcCCceEeCCCCCCCc-hHHHHHHHhhCCCCccEEEEcCCC--hhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          101 DKNPWKKEKGEAFGMTDFINPDDEPNK-SISELVKGITHGMGVDYCFECTGV--PSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       101 ~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~i~~~~~~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +++++++++++++|+++++++++   . ++.+.+.     .++|++|||+|.  +..++.++++++++ |+++.+|....
T Consensus       210 ~~~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~-----~~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~  280 (360)
T 1piw_A          210 SRSSRKREDAMKMGADHYIATLE---EGDWGEKYF-----DTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ  280 (360)
T ss_dssp             ESSSTTHHHHHHHTCSEEEEGGG---TSCHHHHSC-----SCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS
T ss_pred             cCCHHHHHHHHHcCCCEEEcCcC---chHHHHHhh-----cCCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC
Confidence            99999999999999999998876   5 5555443     389999999998  55788999999999 99999998654


Q ss_pred             ceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeeccc--HHHHHHHHcCCCe-eEEEEeC
Q 025336          178 TMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEE--IDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~-~k~vi~~  254 (254)
                       ...++...++.+++++.|+...   ..++++++++++++|+++  +.+ ++||+++  +++||+.+.+++. +|+||++
T Consensus       281 -~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~~g~l~--~~i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~  353 (360)
T 1piw_A          281 -HEMLSLKPYGLKAVSISYSALG---SIKELNQLLKLVSEKDIK--IWV-ETLPVGEAGVHEAFERMEKGDVRYRFTLVG  353 (360)
T ss_dssp             -SCCEEECGGGCBSCEEEECCCC---CHHHHHHHHHHHHHTTCC--CCE-EEEESSHHHHHHHHHHHHHTCCSSEEEEEC
T ss_pred             -ccccCHHHHHhCCeEEEEEecC---CHHHHHHHHHHHHhCCCc--ceE-EEEeccHhHHHHHHHHHHCCCCceEEEEec
Confidence             1144455667799999997643   246789999999999954  456 7999999  9999999987775 6999874

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=8e-38  Score=255.67  Aligned_cols=232  Identities=17%  Similarity=0.209  Sum_probs=197.7

Q ss_pred             CCCCCcccccCCceeeeeec----cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            1 MLDGTSRMSVRGQKLYHIFS----CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~----~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +|+++.+|++ ||+|+++.+    .|+|+||+++|++.++++|++++++++++++++++|||+++ +..++++|++|||+
T Consensus        82 vG~~v~~~~~-GdrV~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~  159 (321)
T 3tqh_A           82 LGSDVNNVNI-GDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIH  159 (321)
T ss_dssp             ECTTCCSCCT-TCEEEEECSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEES
T ss_pred             eCCCCCCCCC-CCEEEEccCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEE
Confidence            3788999999 999997753    59999999999999999999999999999999999999999 88999999999999


Q ss_pred             c-CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCch-HHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           77 G-LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS-ISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        77 G-~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      | +|++|++++|+||.+|+ +|++++ ++++.++++++|+++++++++   .+ +.+.+      .++|++|||+|++ .
T Consensus       160 Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~lGa~~~i~~~~---~~~~~~~~------~g~D~v~d~~g~~-~  227 (321)
T 3tqh_A          160 AGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKALGAEQCINYHE---EDFLLAIS------TPVDAVIDLVGGD-V  227 (321)
T ss_dssp             STTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHTCSEEEETTT---SCHHHHCC------SCEEEEEESSCHH-H
T ss_pred             cCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHcCCCEEEeCCC---cchhhhhc------cCCCEEEECCCcH-H
Confidence            7 69999999999999999 899886 566789999999999999887   55 44433      3899999999998 4


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCCCCCceEEEeeccc
Q 025336          155 LSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFKLHQLLTHHVKLEE  234 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (254)
                      +..++++++++ |+++.+|......   ....+..+++++.+....  ...++++++++++++|+++  +.++++||+++
T Consensus       228 ~~~~~~~l~~~-G~iv~~g~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~  299 (321)
T 3tqh_A          228 GIQSIDCLKET-GCIVSVPTITAGR---VIEVAKQKHRRAFGLLKQ--FNIEELHYLGKLVSEDKLR--IEISRIFQLSE  299 (321)
T ss_dssp             HHHHGGGEEEE-EEEEECCSTTHHH---HHHHHHHTTCEEECCCCC--CCHHHHHHHHHHHHTTSSC--CCEEEEECGGG
T ss_pred             HHHHHHhccCC-CEEEEeCCCCchh---hhhhhhhcceEEEEEecC--CCHHHHHHHHHHHHCCCcc--cccccEEcHHH
Confidence            59999999999 9999998654311   122345689999885422  2356799999999999954  56889999999


Q ss_pred             HHHHHHHHcCCCe-eEEEEeC
Q 025336          235 IDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       235 ~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      +++||+.+.+++. +|+||++
T Consensus       300 ~~~A~~~~~~~~~~gKvvl~~  320 (321)
T 3tqh_A          300 AVTAHELLETGHVRGKLVFKV  320 (321)
T ss_dssp             HHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHcCCCCceEEEEe
Confidence            9999999998887 5999975

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=2.5e-39  Score=264.02  Aligned_cols=228  Identities=13%  Similarity=0.169  Sum_probs=180.6

Q ss_pred             CCCCCcccccCCceeeeeec---cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEc
Q 025336            1 MLDGTSRMSVRGQKLYHIFS---CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLG   77 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~---~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G   77 (254)
                      +|+++.+|++ ||+|++..+   +|+|+||+++|++.++++|+++++++|++++++++|||+++ +..++++|++|||+|
T Consensus        73 vG~~v~~~~v-GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G  150 (315)
T 3goh_A           73 VGAKVDSKML-GRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVG  150 (315)
T ss_dssp             ECTTSCGGGT-TCEEEEECCTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEEC
T ss_pred             eCCCCCCCCC-CCEEEEeCCCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEEC
Confidence            3788899999 999997654   69999999999999999999999999999999999999999 899999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHH
Q 025336           78 LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  157 (254)
Q Consensus        78 ~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  157 (254)
                      +|++|++++|+||.+|+ +|++++ ++++.++++++|++++++. .   +       ++  +.++|++|||+|++ .+..
T Consensus       151 aG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~d-~---~-------~v--~~g~Dvv~d~~g~~-~~~~  214 (315)
T 3goh_A          151 FGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYRE-P---S-------QV--TQKYFAIFDAVNSQ-NAAA  214 (315)
T ss_dssp             CSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEESS-G---G-------GC--CSCEEEEECC--------T
T ss_pred             CCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEcC-H---H-------Hh--CCCccEEEECCCch-hHHH
Confidence            99999999999999999 999998 9999999999999998841 1   2       12  45999999999997 5688


Q ss_pred             HHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC---C-------CCCHHHHHHHHhCCCCCCCCceE
Q 025336          158 ALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK---T-------KSDLPILLDKCKNKEFKLHQLLT  227 (254)
Q Consensus       158 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
                      ++++++++ |+++.+|.... ....   ....+.+.+....+....   .       .+.++++++++++|++  ++.++
T Consensus       215 ~~~~l~~~-G~~v~~g~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~  287 (315)
T 3goh_A          215 LVPSLKAN-GHIICIQDRIP-APID---PAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKM--EIAAP  287 (315)
T ss_dssp             TGGGEEEE-EEEEEECCC--------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSS--CCCCC
T ss_pred             HHHHhcCC-CEEEEEeCCCC-cccc---chhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCc--ccccc
Confidence            99999999 99999976443 1111   122255666555432211   1       1246789999999994  57788


Q ss_pred             EEeecccHHHHHHHHcCCCeeEEEEeC
Q 025336          228 HHVKLEEIDKAIQLLKQPDCVKVLITI  254 (254)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~~k~vi~~  254 (254)
                      ++|||+++++||+.+. +..+|+||++
T Consensus       288 ~~~~l~~~~~A~~~~~-~~~gKvvi~~  313 (315)
T 3goh_A          288 DIFRFEQMIEALDHSE-QTKLKTVLTL  313 (315)
T ss_dssp             EEEEGGGHHHHHHHHH-HHCCCEEEES
T ss_pred             eEecHHHHHHHHHHHH-hcCCcEEEEe
Confidence            9999999999999998 5557999875

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=5.8e-37  Score=254.67  Aligned_cols=234  Identities=21%  Similarity=0.328  Sum_probs=200.4

Q ss_pred             CCCCCcccccCCceeeee-----------------------------------eccCcceeeEEecCCceEEcCCCCCcc
Q 025336            1 MLDGTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVRVDPSIDLS   45 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~   45 (254)
                      +|+++.+|++ ||+|+..                                   ...|+|+||+++|+..++++|++++++
T Consensus        85 vG~~V~~~~v-GDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~  163 (366)
T 1yqd_A           85 VGSKVKKVNV-GDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLD  163 (366)
T ss_dssp             ECTTCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTT
T ss_pred             ECCCCCcCCC-CCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHH
Confidence            3788889999 9999731                                   135899999999999999999999999


Q ss_pred             ccccccchhhhhhHHHHHhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceEeCCCC
Q 025336           46 HASFLSCGFTTGFGAAWKEAEVE-KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDFINPDD  123 (254)
Q Consensus        46 ~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v~~~~~  123 (254)
                      +|+.+++++.|||+++. ..+++ +|++|||+|+|++|++++|+++.+|+ +|+++++++++.+.++ ++|+++++++++
T Consensus       164 ~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~  241 (366)
T 1yqd_A          164 GGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSFLVSRD  241 (366)
T ss_dssp             TTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEEEETTC
T ss_pred             HhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceEEeccC
Confidence            99999999999999984 56788 99999999999999999999999999 9999999999999887 899999998875


Q ss_pred             CCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC
Q 025336          124 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK  203 (254)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  203 (254)
                         .+   .+.+.++  ++|++|||+|.+..+..++++++++ |+++.+|.... ..+++...++.+++++.|+...   
T Consensus       242 ---~~---~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~---  308 (366)
T 1yqd_A          242 ---QE---QMQAAAG--TLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPEK-PLELPAFSLIAGRKIVAGSGIG---  308 (366)
T ss_dssp             ---HH---HHHHTTT--CEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCSS-CEEECHHHHHTTTCEEEECCSC---
T ss_pred             ---HH---HHHHhhC--CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCCC-CCCcCHHHHHhCCcEEEEecCC---
Confidence               43   4555543  8999999999865679999999999 99999998665 4557777788899999998643   


Q ss_pred             CCCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEe
Q 025336          204 TKSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  253 (254)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~  253 (254)
                      ..++++++++++++|++++  .+ ++|||+++++||+.+.+++. +|+||+
T Consensus       309 ~~~~~~~~~~l~~~g~l~~--~~-~~~~l~~~~~A~~~~~~~~~~gKvvl~  356 (366)
T 1yqd_A          309 GMKETQEMIDFAAKHNITA--DI-EVISTDYLNTAMERLAKNDVRYRFVID  356 (366)
T ss_dssp             CHHHHHHHHHHHHHTTCCC--CE-EEECGGGHHHHHHHHHTTCCSSEEEEC
T ss_pred             CHHHHHHHHHHHHcCCCCC--ce-EEEcHHHHHHHHHHHHcCCcceEEEEE
Confidence            2456899999999999654  34 68999999999999988876 699986

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=1.2e-38  Score=260.95  Aligned_cols=237  Identities=15%  Similarity=0.193  Sum_probs=199.1

Q ss_pred             CCcccccCCceeeee------eccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHH--HhcCCCCCC-EEE
Q 025336            4 GTSRMSVRGQKLYHI------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW--KEAEVEKGS-SVA   74 (254)
Q Consensus         4 ~~~~~~~~Gd~v~~~------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~vl   74 (254)
                      ++.+|++ ||+|++.      ..+|+|+||+++|++.++++|+++++++|++++++++|||+++.  .+.++++++ +||
T Consensus        73 Gv~~~~v-GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~Vl  151 (324)
T 3nx4_A           73 EDPRFHA-GQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVV  151 (324)
T ss_dssp             SSTTCCT-TCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred             CCCCCCC-CCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEE
Confidence            3568999 9999854      24699999999999999999999999999999999999999875  345566532 499


Q ss_pred             EEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChh
Q 025336           75 VLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  153 (254)
Q Consensus        75 I~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  153 (254)
                      |+|+ |++|++++|+||.+|+ +|+++++++++.++++++|+++++++++   .+.   +++++++ ++|++|||+|++ 
T Consensus       152 V~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~---~~~~~~~-~~d~v~d~~g~~-  222 (324)
T 3nx4_A          152 VTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDE---FAE---SRPLEKQ-LWAGAIDTVGDK-  222 (324)
T ss_dssp             ESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEEEEGGG---SSC---CCSSCCC-CEEEEEESSCHH-
T ss_pred             EECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecCC---HHH---HHhhcCC-CccEEEECCCcH-
Confidence            9997 9999999999999999 9999999999999999999999998876   332   4455554 899999999987 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEe
Q 025336          154 LLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHV  230 (254)
Q Consensus       154 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                      .++.++++++++ |+++.+|...+...+++...++.+++++.|+.......   .+.++++++++++|+++  +. +++|
T Consensus       223 ~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~-~~~~  298 (324)
T 3nx4_A          223 VLAKVLAQMNYG-GCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYA--QA-ATEI  298 (324)
T ss_dssp             HHHHHHHTEEEE-EEEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHH--HH-EEEE
T ss_pred             HHHHHHHHHhcC-CEEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCC--CC-ceeE
Confidence            899999999999 99999998766445666677777999999986543221   24578888999999854  45 7899


Q ss_pred             ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          231 KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       231 ~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      |++++++||+.+.+++. +|+||++
T Consensus       299 ~l~~~~~A~~~~~~~~~~gkvvv~~  323 (324)
T 3nx4_A          299 TLADAPKFADAIINNQVQGRTLVKI  323 (324)
T ss_dssp             EGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             eHHHHHHHHHHHHhCCCCceEEEec
Confidence            99999999999998887 5999975

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=8.4e-38  Score=256.59  Aligned_cols=240  Identities=20%  Similarity=0.219  Sum_probs=194.1

Q ss_pred             CCcccccCCceeeeee------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHH--HhcCCCCCC-EEE
Q 025336            4 GTSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW--KEAEVEKGS-SVA   74 (254)
Q Consensus         4 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~vl   74 (254)
                      ++.+|++ ||+|++..      ..|+|+||+++|++.++++|+++++++|+++++++.|||.++.  .+.++++|+ +||
T Consensus        77 ~v~~~~v-GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~Vl  155 (330)
T 1tt7_A           77 NDPRFAE-GDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVL  155 (330)
T ss_dssp             SSTTCCT-TCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred             CCCCCCC-CCEEEEcccccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEE
Confidence            4577999 99998642      3599999999999999999999999999999999999998864  356788886 999


Q ss_pred             EEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChh
Q 025336           75 VLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  153 (254)
Q Consensus        75 I~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  153 (254)
                      |+|+ |++|++++|+++..|+ +|++++++++++++++++|+++++++++   .+ .+.++++++ .++|++|||+|++ 
T Consensus       156 V~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~v~~~~~---~~-~~~~~~~~~-~~~d~vid~~g~~-  228 (330)
T 1tt7_A          156 VTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED---VY-DGTLKALSK-QQWQGAVDPVGGK-  228 (330)
T ss_dssp             EESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH---HC-SSCCCSSCC-CCEEEEEESCCTH-
T ss_pred             EECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC---ch-HHHHHHhhc-CCccEEEECCcHH-
Confidence            9997 9999999999999999 8999999999999999999999987653   21 112233333 3899999999996 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEe
Q 025336          154 LLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHV  230 (254)
Q Consensus       154 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                      .+..++++++++ |+++.+|...+...+++...++.+++++.|+.......   .+.++.+++++++++  +++.++++|
T Consensus       229 ~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~~i~~~~  305 (330)
T 1tt7_A          229 QLASLLSKIQYG-GSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQ--LLTIVDREV  305 (330)
T ss_dssp             HHHHHHTTEEEE-EEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSC--STTSEEEEE
T ss_pred             HHHHHHHhhcCC-CEEEEEecCCCCccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCC--cccccceEE
Confidence            889999999999 99999998755345566666777999999985322111   123455556666777  567788999


Q ss_pred             ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          231 KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       231 ~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ||+++++||+.+.+++. +|+||++
T Consensus       306 ~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          306 SLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             CSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             cHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            99999999999988775 6999875

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=2.6e-37  Score=277.92  Aligned_cols=240  Identities=20%  Similarity=0.247  Sum_probs=204.6

Q ss_pred             CCCCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-C
Q 025336            1 MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-G   79 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g   79 (254)
                      +|+++..|++ ||+|+++.. |+|+||+++|+..++++|+++++++|++++++++|||+++.+.+++++|++|||+|+ |
T Consensus       279 vG~~V~~~~v-GDrV~~~~~-G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaG  356 (795)
T 3slk_A          279 TGPGVTGLAP-GDRVMGMIP-KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAG  356 (795)
T ss_dssp             ECSSCCSSCT-TCEEEECCS-SCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTB
T ss_pred             eCCCCCcCCC-CCEEEEEec-CCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCC
Confidence            4788999999 999998754 999999999999999999999999999999999999999988899999999999986 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHH
Q 025336           80 TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  159 (254)
Q Consensus        80 ~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  159 (254)
                      ++|++++|+||.+|+ +|++++.++ +.+.++ +|+++++++++   .++.+.+++.++++++|+|||+++++ .+..++
T Consensus       357 gvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~~---~~~~~~i~~~t~g~GvDvVld~~gg~-~~~~~l  429 (795)
T 3slk_A          357 GVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLASSRT---CDFEQQFLGATGGRGVDVVLNSLAGE-FADASL  429 (795)
T ss_dssp             HHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEECSSS---STHHHHHHHHSCSSCCSEEEECCCTT-TTHHHH
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheeecCC---hhHHHHHHHHcCCCCeEEEEECCCcH-HHHHHH
Confidence            999999999999999 899997654 666666 99999999998   89999999999999999999999986 789999


Q ss_pred             HHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC---CCCCHHHHHHHHhCCCCCCCCceEEEeecccHH
Q 025336          160 ETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK---TKSDLPILLDKCKNKEFKLHQLLTHHVKLEEID  236 (254)
Q Consensus       160 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (254)
                      ++++++ |+++.+|.... ...... ....+++++.+..+....   ..+.++++++++++|++  +++++++||+++++
T Consensus       430 ~~l~~~-Gr~v~iG~~~~-~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l--~p~~~~~~~l~~~~  504 (795)
T 3slk_A          430 RMLPRG-GRFLELGKTDV-RDPVEV-ADAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVL--EPLPVTAWDVRQAP  504 (795)
T ss_dssp             TSCTTC-EEEEECCSTTC-CCHHHH-HHHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSC--CCCCEEEEEGGGHH
T ss_pred             HHhcCC-CEEEEeccccc-cCcccc-cccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCc--CCCcceeEcHHHHH
Confidence            999999 99999997654 111111 122367777776542111   13458889999999995  45678899999999


Q ss_pred             HHHHHHcCCCe-eEEEEeC
Q 025336          237 KAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       237 ~a~~~~~~~~~-~k~vi~~  254 (254)
                      +||+.+.+++. +|+||++
T Consensus       505 eA~~~l~~g~~~GKvVl~~  523 (795)
T 3slk_A          505 EALRHLSQARHVGKLVLTM  523 (795)
T ss_dssp             HHHHHHHHTCCCBEEEEEC
T ss_pred             HHHHHHhcCCccceEEEec
Confidence            99999988877 6999874

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=3.8e-36  Score=250.69  Aligned_cols=240  Identities=16%  Similarity=0.193  Sum_probs=195.3

Q ss_pred             CCCCCcccccCCceeeeeec---cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcC----CCCCCEE
Q 025336            1 MLDGTSRMSVRGQKLYHIFS---CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAE----VEKGSSV   73 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~~---~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~----~~~~~~v   73 (254)
                      +|+++.+|++ ||+|++..+   .|+|+||+++|++.++++|+++++++|++++++++|||+++.+..+    +++|++|
T Consensus       109 vG~~V~~~~v-GDrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~V  187 (375)
T 2vn8_A          109 CGLDVKYFKP-GDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRV  187 (375)
T ss_dssp             ECTTCCSCCT-TCEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEE
T ss_pred             eCCCCCCCCC-CCEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEE
Confidence            3788899999 999997653   5999999999999999999999999999999999999999977788    8999999


Q ss_pred             EEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCCh
Q 025336           74 AVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  152 (254)
Q Consensus        74 lI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  152 (254)
                      ||+|+ |++|++++|+++..|+ +|++++ ++++.++++++|++.++++++   .++.+.+.+.   .++|++|||+|++
T Consensus       188 lV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~~---~g~D~vid~~g~~  259 (375)
T 2vn8_A          188 LILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRKLGADDVIDYKS---GSVEEQLKSL---KPFDFILDNVGGS  259 (375)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS---SCHHHHHHTS---CCBSEEEESSCTT
T ss_pred             EEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHHcCCCEEEECCc---hHHHHHHhhc---CCCCEEEECCCCh
Confidence            99985 9999999999999999 899987 678999999999999999887   7777777653   3899999999987


Q ss_pred             -hHHHHHHHHcccCCcEEEEEccCCCceee---ccH------HHHHh-------CCCEEEeeecCCCCCCCCHHHHHHHH
Q 025336          153 -SLLSEALETTKVGKGKVIVIGVGVDTMVP---LNV------IALAC-------GGRTLKGTTFGGIKTKSDLPILLDKC  215 (254)
Q Consensus       153 -~~~~~~~~~l~~~~G~~v~~g~~~~~~~~---~~~------~~~~~-------~~~~i~g~~~~~~~~~~~~~~~~~~~  215 (254)
                       ..+..++++++++ |+++.+|........   ++.      ..++.       ++..+.+...  ....+.++++++++
T Consensus       260 ~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~l~  336 (375)
T 2vn8_A          260 TETWAPDFLKKWSG-ATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF--MASGPCLDDIAELV  336 (375)
T ss_dssp             HHHHGGGGBCSSSC-CEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC--CCCHHHHHHHHHHH
T ss_pred             hhhhHHHHHhhcCC-cEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEEEEe--CCCHHHHHHHHHHH
Confidence             4568888999999 999999975431110   110      11211       3444443321  11234579999999


Q ss_pred             hCCCCCCCCceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          216 KNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++|++  ++.++++|||+++++||+.+.+++. +|+||++
T Consensus       337 ~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          337 DAGKI--RPVIEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HTTSC--CCCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             HCCCc--ccCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            99995  5778899999999999999987765 6999874

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9e-37  Score=250.27  Aligned_cols=238  Identities=17%  Similarity=0.209  Sum_probs=188.2

Q ss_pred             CCcccccCCceeeeee------ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHH--HhcCCCCCC-EEE
Q 025336            4 GTSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW--KEAEVEKGS-SVA   74 (254)
Q Consensus         4 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~vl   74 (254)
                      ++.+|++ ||+|++..      ..|+|+||+++|++.++++|+++++++|+++++++.|||.++.  .+.++++++ +||
T Consensus        76 ~v~~~~v-GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~Vl  154 (328)
T 1xa0_A           76 QHPRFRE-GDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVL  154 (328)
T ss_dssp             CSSSCCT-TCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred             CCCCCCC-CCEEEEccccCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEE
Confidence            4678999 99998642      3599999999999999999999999999999999999998864  356788886 999


Q ss_pred             EEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChh
Q 025336           75 VLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  153 (254)
Q Consensus        75 I~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  153 (254)
                      |+|+ |++|++++|+++.+|+ +|++++++++++++++++|+++++++++   .+ .+.+++++++ ++|++|||+|++ 
T Consensus       155 V~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~-~~~~~~~~~~-~~d~vid~~g~~-  227 (328)
T 1xa0_A          155 VTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLARED---VM-AERIRPLDKQ-RWAAAVDPVGGR-  227 (328)
T ss_dssp             ESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC-------------CCSC-CEEEEEECSTTT-
T ss_pred             EecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC---cH-HHHHHHhcCC-cccEEEECCcHH-
Confidence            9997 9999999999999999 8999999999999999999999998875   33 3445555544 899999999986 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEe
Q 025336          154 LLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHV  230 (254)
Q Consensus       154 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                      .+..++++++++ |+++.+|...+...+++...++.+++++.|+.......   .+.++.+.++++++ +  ++ ++++|
T Consensus       228 ~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l--~~-~~~~~  302 (328)
T 1xa0_A          228 TLATVLSRMRYG-GAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-L--ER-IAQEI  302 (328)
T ss_dssp             THHHHHHTEEEE-EEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-H--HH-HEEEE
T ss_pred             HHHHHHHhhccC-CEEEEEeecCCCCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-C--ce-eeeEe
Confidence            789999999999 99999998654334555566777999999975321111   12345555555555 3  33 36899


Q ss_pred             ecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          231 KLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       231 ~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ||+++++||+.+.+++. +|+||++
T Consensus       303 ~l~~~~~A~~~~~~~~~~gKvvv~~  327 (328)
T 1xa0_A          303 SLAELPQALKRILRGELRGRTVVRL  327 (328)
T ss_dssp             EGGGHHHHHHHHHHTCCCSEEEEEC
T ss_pred             CHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            99999999999987765 6999875

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=2.1e-36  Score=251.00  Aligned_cols=242  Identities=20%  Similarity=0.225  Sum_probs=202.7

Q ss_pred             CCCCCc-ccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-
Q 025336            1 MLDGTS-RMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-   78 (254)
Q Consensus         1 ~g~~~~-~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-   78 (254)
                      +|+++. .|++ ||+|++.. .|+|+||+++|++.++++|+. + .++++++++++|||+++.+.+++++|++|||+|+ 
T Consensus        98 vG~~V~~~~~v-GdrV~~~~-~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~  173 (362)
T 2c0c_A           98 LGLSASARYTV-GQAVAYMA-PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAA  173 (362)
T ss_dssp             ECTTGGGTCCT-TCEEEEEC-SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTT
T ss_pred             ECCCccCCCCC-CCEEEEcc-CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCC
Confidence            377888 9999 99998765 599999999999999999996 3 4667788999999999988889999999999995 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      |++|++++|+++..|+ +|+++++++++.+.++++|++.++++++   .++.+.+++.++ .++|++|||+|.. .+..+
T Consensus       174 G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~~~~~~~-~g~D~vid~~g~~-~~~~~  247 (362)
T 2c0c_A          174 GGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKT---EPVGTVLKQEYP-EGVDVVYESVGGA-MFDLA  247 (362)
T ss_dssp             BTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHCT-TCEEEEEECSCTH-HHHHH
T ss_pred             cHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC---hhHHHHHHHhcC-CCCCEEEECCCHH-HHHHH
Confidence            9999999999999999 9999999999999999999999999887   788888887764 4899999999985 78999


Q ss_pred             HHHcccCCcEEEEEccCCCce--e--------eccHHHHHhCCCEEEeeecCCCC--CCCCHHHHHHHHhCCCCCCCCc-
Q 025336          159 LETTKVGKGKVIVIGVGVDTM--V--------PLNVIALACGGRTLKGTTFGGIK--TKSDLPILLDKCKNKEFKLHQL-  225 (254)
Q Consensus       159 ~~~l~~~~G~~v~~g~~~~~~--~--------~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-  225 (254)
                      +++++++ |+++.+|...+..  .        .+ ...++.+++++.|+....+.  ..+.++++++++++|++++... 
T Consensus       248 ~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~  325 (362)
T 2c0c_A          248 VDALATK-GRLIVIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDL  325 (362)
T ss_dssp             HHHEEEE-EEEEECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEEC
T ss_pred             HHHHhcC-CEEEEEeCCCCcCccccccccccccc-HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeecc
Confidence            9999999 9999999764311  1        12 24566799999998754332  1346889999999999765432 


Q ss_pred             -----eEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          226 -----LTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       226 -----~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                           +++.+||+++++||+.+.+++. +|+||++
T Consensus       326 ~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  360 (362)
T 2c0c_A          326 GDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVEL  360 (362)
T ss_dssp             STTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEEC
T ss_pred             ccccccccccCHHHHHHHHHHHHcCCCCceEEEEc
Confidence                 2356899999999999988765 6999874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=4.6e-36  Score=243.31  Aligned_cols=228  Identities=17%  Similarity=0.235  Sum_probs=189.4

Q ss_pred             CceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHH
Q 025336           12 GQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGAR   90 (254)
Q Consensus        12 Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~   90 (254)
                      ||+|++...+|+|+||+++|++.++++|++++++++++++++++|||+++.... +++|++|||+|+ |++|++++|+++
T Consensus        69 GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~  147 (302)
T 1iz0_A           69 GRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVAR  147 (302)
T ss_dssp             TEEEEEECSSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHH
T ss_pred             CcEEEEecCCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHH
Confidence            899998877799999999999999999999999999999999999999997677 999999999997 999999999999


Q ss_pred             HcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEE
Q 025336           91 MQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVI  170 (254)
Q Consensus        91 ~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  170 (254)
                      ..|+ +|+++++++++.+.++++|+++++++++  ..++.+.+      .++|++|| +|++ .+..++++++++ |+++
T Consensus       148 ~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~--~~~~~~~~------~~~d~vid-~g~~-~~~~~~~~l~~~-G~~v  215 (302)
T 1iz0_A          148 AMGL-RVLAAASRPEKLALPLALGAEEAATYAE--VPERAKAW------GGLDLVLE-VRGK-EVEESLGLLAHG-GRLV  215 (302)
T ss_dssp             HTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGG--HHHHHHHT------TSEEEEEE-CSCT-THHHHHTTEEEE-EEEE
T ss_pred             HCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCc--chhHHHHh------cCceEEEE-CCHH-HHHHHHHhhccC-CEEE
Confidence            9999 9999999999999999999999887642  01233322      38999999 9985 789999999999 9999


Q ss_pred             EEccCCCceeeccHHHHHhCCCEEEeeecCCC-CCCCCHHHHHH---HHhCCCCCCCCceEEEeecccHHHHHHHHcCCC
Q 025336          171 VIGVGVDTMVPLNVIALACGGRTLKGTTFGGI-KTKSDLPILLD---KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD  246 (254)
Q Consensus       171 ~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  246 (254)
                      .+|.......+++...++.+++++.|+....+ ...+.++++++   ++++|++  ++.++++||++++++||+.+.+++
T Consensus       216 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~  293 (302)
T 1iz0_A          216 YIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGREL--RPVVGPVFPFAEAEAAFRALLDRG  293 (302)
T ss_dssp             EC-------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTB--CCCEEEEEEGGGHHHHHHHTTCTT
T ss_pred             EEeCCCCCCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCc--ccccceEEcHHHHHHHHHHHHcCC
Confidence            99986552234555567779999999875322 12456888999   9999994  577889999999999999998876


Q ss_pred             e-eEEEEeC
Q 025336          247 C-VKVLITI  254 (254)
Q Consensus       247 ~-~k~vi~~  254 (254)
                      . +|+++++
T Consensus       294 ~~gKvvv~~  302 (302)
T 1iz0_A          294 HTGKVVVRL  302 (302)
T ss_dssp             CCBEEEEEC
T ss_pred             CCceEEEeC
Confidence            5 6999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=3.8e-36  Score=249.93  Aligned_cols=220  Identities=16%  Similarity=0.168  Sum_probs=188.0

Q ss_pred             ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHH--H--hcCCC--C-------CCEEEEEcCCHHHHHHH
Q 025336           20 SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAW--K--EAEVE--K-------GSSVAVLGLGTVGLGAV   86 (254)
Q Consensus        20 ~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~--~--~~~~~--~-------~~~vlI~G~g~~G~~~~   86 (254)
                      ..|+|+||+++|++.++++|++++ ++|+ ++.++.|||+++.  .  ..+++  +       |++|||+|+|++|++++
T Consensus       120 ~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~  197 (366)
T 2cdc_A          120 MDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFT  197 (366)
T ss_dssp             ECCSCBSEEEECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHH
T ss_pred             CCCceeEEEEechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHH
Confidence            359999999999999999999999 8765 6689999999986  4  78888  8       99999999999999999


Q ss_pred             HHHHHcCCCeEEEEcCCc---ccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHH-HHHHHHc
Q 025336           87 DGARMQGAAKIIGIDKNP---WKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL-SEALETT  162 (254)
Q Consensus        87 ~~a~~~g~~~v~~v~~~~---~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~-~~~~~~l  162 (254)
                      |+++..|+ +|+++++++   ++.++++++|++.+ + +    .++.+.+.+ ++ .++|++||++|.+..+ +.+++++
T Consensus       198 q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~----~~~~~~~~~-~~-~~~d~vid~~g~~~~~~~~~~~~l  268 (366)
T 2cdc_A          198 LLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-N-S----SNGYDKLKD-SV-GKFDVIIDATGADVNILGNVIPLL  268 (366)
T ss_dssp             HHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-E-C----TTCSHHHHH-HH-CCEEEEEECCCCCTHHHHHHGGGE
T ss_pred             HHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-c-h----HHHHHHHHH-hC-CCCCEEEECCCChHHHHHHHHHHH
Confidence            99999999 999999998   89999999999988 6 4    245556666 55 4899999999987678 9999999


Q ss_pred             ccCCcEEEEEccCCCceeeccHHH---HHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCCCC----CCCceEEEeecccH
Q 025336          163 KVGKGKVIVIGVGVDTMVPLNVIA---LACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFK----LHQLLTHHVKLEEI  235 (254)
Q Consensus       163 ~~~~G~~v~~g~~~~~~~~~~~~~---~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  235 (254)
                      +++ |+++.+|.......+++...   ++.+++++.|+...   ..++++++++++++|+++    ++++++++|||+++
T Consensus       269 ~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~  344 (366)
T 2cdc_A          269 GRN-GVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNG---QKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDE  344 (366)
T ss_dssp             EEE-EEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCCC---CHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCH
T ss_pred             hcC-CEEEEEecCCCCccccChhhhHHHHhcCcEEEEecCC---CHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHH
Confidence            999 99999998765335666666   77899999997643   256789999999999987    78888899999999


Q ss_pred             HHHHHH--HcCCCeeEEEEeC
Q 025336          236 DKAIQL--LKQPDCVKVLITI  254 (254)
Q Consensus       236 ~~a~~~--~~~~~~~k~vi~~  254 (254)
                      ++||+.  +.++..+|+||++
T Consensus       345 ~~A~~~l~~~~~~~gKvvi~~  365 (366)
T 2cdc_A          345 KELLKVLREKEHGEIKIRILW  365 (366)
T ss_dssp             HHHHHHHHCCCTTCCEEEEEC
T ss_pred             HHHHHHHhhhcCCceEEEEec
Confidence            999998  6644457999875

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=2.1e-35  Score=244.74  Aligned_cols=239  Identities=18%  Similarity=0.213  Sum_probs=201.6

Q ss_pred             CCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCC-----CccccccccchhhhhhHHHHHhcCCCCC--CEEEEE
Q 025336            4 GTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSI-----DLSHASFLSCGFTTGFGAAWKEAEVEKG--SSVAVL   76 (254)
Q Consensus         4 ~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~-----~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~   76 (254)
                      ++.+|++ ||+|++..  |+|+||+++|++.++++|+++     +++ +++++++++|||+++.+..++++|  ++|||+
T Consensus        92 ~v~~~~v-GdrV~~~~--G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~  167 (357)
T 2zb4_A           92 KHTNLTK-GDFVTSFY--WPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVS  167 (357)
T ss_dssp             CSTTCCT-TCEEEEEE--EESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEES
T ss_pred             CCCCCCC-CCEEEecC--CCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEE
Confidence            4678999 99999764  789999999999999999998     555 677889999999999888999999  999999


Q ss_pred             cC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           77 GL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        77 G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      |+ |++|++++|+++..|+++|+++++++++.+.+++ +|++.++++.+   .++.+.+.+.+++ ++|++|||+|+. .
T Consensus       168 GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~~~~~~~~-~~d~vi~~~G~~-~  242 (357)
T 2zb4_A          168 GAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK---DNVAEQLRESCPA-GVDVYFDNVGGN-I  242 (357)
T ss_dssp             STTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT---SCHHHHHHHHCTT-CEEEEEESCCHH-H
T ss_pred             CCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc---hHHHHHHHHhcCC-CCCEEEECCCHH-H
Confidence            97 9999999999999998789999999999998887 99999999887   7888889888877 999999999975 7


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCc--eeecc-------HHHHHhCCCEEEeeecCCCC--CCCCHHHHHHHHhCCCCCCC
Q 025336          155 LSEALETTKVGKGKVIVIGVGVDT--MVPLN-------VIALACGGRTLKGTTFGGIK--TKSDLPILLDKCKNKEFKLH  223 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~~~--~~~~~-------~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~  223 (254)
                      +..++++++++ |+++.+|.....  .++++       ...++.+++++.|+....+.  ..+.++++++++++|++++.
T Consensus       243 ~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  321 (357)
T 2zb4_A          243 SDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIK  321 (357)
T ss_dssp             HHHHHHTEEEE-EEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHhccC-cEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCc
Confidence            89999999999 999999976431  22222       14566799999998653221  13458899999999997655


Q ss_pred             CceEEEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          224 QLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       224 ~~~~~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                        +...|||+++++||+.+.+++. +|+||++
T Consensus       322 --~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  351 (357)
T 2zb4_A          322 --ETVINGLENMGAAFQSMMTGGNIGKQIVCI  351 (357)
T ss_dssp             --EEEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             --cceecCHHHHHHHHHHHHcCCCCceEEEEE
Confidence              4456999999999999988765 6999874

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=6.2e-37  Score=255.54  Aligned_cols=240  Identities=14%  Similarity=0.107  Sum_probs=194.8

Q ss_pred             CCCC-cccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE--cC
Q 025336            2 LDGT-SRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL--GL   78 (254)
Q Consensus         2 g~~~-~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~--G~   78 (254)
                      |+++ .+|++ ||+|++.. .|+|+||+++|++.++++|+++++++|+++++.++|||+++ +... ++|++|||+  |+
T Consensus       106 G~~v~~~~~v-GdrV~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~  181 (379)
T 3iup_A          106 GSSPAAQALM-GKTVAAIG-GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAA  181 (379)
T ss_dssp             CSSHHHHTTT-TCEEEECC-SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTT
T ss_pred             CCCcccCCCC-CCEEEecC-CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCC
Confidence            6677 78999 99999765 49999999999999999999999999999999999999876 4444 899999999  45


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHH
Q 025336           79 GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  158 (254)
Q Consensus        79 g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  158 (254)
                      |++|++++|+||.+|+ +|+++++++++.++++++|+++++++++   +++.+.+++.+++.++|++|||+|++..++.+
T Consensus       182 G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~  257 (379)
T 3iup_A          182 SNLGQMLNQICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS---PTFMQDLTEALVSTGATIAFDATGGGKLGGQI  257 (379)
T ss_dssp             SHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTS---TTHHHHHHHHHHHHCCCEEEESCEEESHHHHH
T ss_pred             CHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC---hHHHHHHHHHhcCCCceEEEECCCchhhHHHH
Confidence            9999999999999999 8999999999999999999999999988   89999999998877999999999987677888


Q ss_pred             HHHcc-----cC----------CcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC---CC----CCHHHHHHHHh
Q 025336          159 LETTK-----VG----------KGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK---TK----SDLPILLDKCK  216 (254)
Q Consensus       159 ~~~l~-----~~----------~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~---~~----~~~~~~~~~~~  216 (254)
                      +++++     ++          +|+++.+|.......++  ..++.+++++.|++...+.   ..    +.++++++++.
T Consensus       258 ~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~~~~~~--~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (379)
T 3iup_A          258 LTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEF--NRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELK  335 (379)
T ss_dssp             HHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEEEEEEE--CCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTT
T ss_pred             HHhcchhhhccccceeecccccCceEEEecCCCCCcccc--ccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHh
Confidence            88875     43          04555555433222222  3445588999998754331   11    22355556665


Q ss_pred             CCCCCCCCceEEEeecccH--HHHHHHHcCCCe-eEEEEeC
Q 025336          217 NKEFKLHQLLTHHVKLEEI--DKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~-~k~vi~~  254 (254)
                      + .  +++.++++|||+++  ++||+.+.+++. +|+||++
T Consensus       336 ~-~--l~~~i~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~  373 (379)
T 3iup_A          336 T-T--FASHYSKEISLAEVLDLDMIAVYNKRATGEKYLINP  373 (379)
T ss_dssp             T-T--TCCCCSEEEEHHHHTCHHHHHHHTTCCTTCCEEEET
T ss_pred             c-c--CCCcceEEecHHHhhhHHHHHHHhcCCCCceEEEeC
Confidence            5 3  66778899999999  999999988866 6999974

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=3.7e-34  Score=235.21  Aligned_cols=239  Identities=18%  Similarity=0.192  Sum_probs=197.8

Q ss_pred             CCcccccCCceeeeeeccCcceeeEEecCCceEEcCCC----CCccc-cccccchhhhhhHHHHHhcCCCCCCEEEEEcC
Q 025336            4 GTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPS----IDLSH-ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL   78 (254)
Q Consensus         4 ~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~----~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~   78 (254)
                      ++..|++ ||+|++.   |+|+||+++|++.++++|++    +++++ +++++++++|||+++.+..++++|++|||+|+
T Consensus        79 ~v~~~~v-GdrV~~~---g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga  154 (333)
T 1v3u_A           79 KNSAFPA-GSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAA  154 (333)
T ss_dssp             SCTTSCT-TCEEEEC---CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEEST
T ss_pred             CCCCCCC-CCEEEec---CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecC
Confidence            4678999 9999864   78999999999999999997    88887 48889999999999978889999999999997


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHH
Q 025336           79 -GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  157 (254)
Q Consensus        79 -g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  157 (254)
                       |++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+  .+++.+.+.+.+++ ++|++||++|.+ .+..
T Consensus       155 ~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~-~~d~vi~~~g~~-~~~~  229 (333)
T 1v3u_A          155 AGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT--VNSLEEALKKASPD-GYDCYFDNVGGE-FLNT  229 (333)
T ss_dssp             TBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--CSCHHHHHHHHCTT-CEEEEEESSCHH-HHHH
T ss_pred             CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCC--HHHHHHHHHHHhCC-CCeEEEECCChH-HHHH
Confidence             9999999999999999 9999999999999999999988888763  24677778777764 899999999986 6899


Q ss_pred             HHHHcccCCcEEEEEccCCC-c----ee-eccHHHHHhCCCEEEeeecCCCC---CCCCHHHHHHHHhCCCCCCCCceEE
Q 025336          158 ALETTKVGKGKVIVIGVGVD-T----MV-PLNVIALACGGRTLKGTTFGGIK---TKSDLPILLDKCKNKEFKLHQLLTH  228 (254)
Q Consensus       158 ~~~~l~~~~G~~v~~g~~~~-~----~~-~~~~~~~~~~~~~i~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  228 (254)
                      ++++++++ |+++.+|...+ .    .. ..+...++.+++++.|+....+.   ..+.++++++++++|++++..  ..
T Consensus       230 ~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~--~~  306 (333)
T 1v3u_A          230 VLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHE--HV  306 (333)
T ss_dssp             HHTTEEEE-EEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCE--EE
T ss_pred             HHHHHhcC-CEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCcc--cc
Confidence            99999999 99999997654 1    11 13556677899999998754331   134577899999999976654  34


Q ss_pred             EeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          229 HVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      .++|+++++||+.+.+++. +|+||++
T Consensus       307 ~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          307 TKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             EECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             ccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            5799999999999988765 6999875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=7.6e-35  Score=240.44  Aligned_cols=240  Identities=19%  Similarity=0.259  Sum_probs=197.9

Q ss_pred             CCCCcccccCCceeeeeeccCcceeeEEecCCc--eEEcCC---CCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            2 LDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANY--VVRVDP---SIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~--v~~~p~---~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      |.++.+|++ ||+|++.   |+|+||+++++..  ++++|+   .++++ +++++++++|||+++.+..++++|++|||+
T Consensus        88 ~~~v~~~~v-GdrV~~~---g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~  162 (345)
T 2j3h_A           88 ESGHPDYKK-GDLLWGI---VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVS  162 (345)
T ss_dssp             EECSTTCCT-TCEEEEE---EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEES
T ss_pred             ecCCCCCCC-CCEEEee---cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEE
Confidence            345678999 9999864   6799999999876  999996   35555 677889999999999778899999999999


Q ss_pred             cC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH
Q 025336           77 GL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  154 (254)
Q Consensus        77 G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  154 (254)
                      |+ |++|++++|+++..|+ +|+++++++++.+.++ ++|++.++|+.+  ..++.+.+++.++ .++|++|||+|++ .
T Consensus       163 Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~-~~~d~vi~~~g~~-~  237 (345)
T 2j3h_A          163 AASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE--ESDLTAALKRCFP-NGIDIYFENVGGK-M  237 (345)
T ss_dssp             STTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTS--CSCSHHHHHHHCT-TCEEEEEESSCHH-H
T ss_pred             CCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCC--HHHHHHHHHHHhC-CCCcEEEECCCHH-H
Confidence            97 9999999999999999 9999999999999998 799999988765  1367777877765 4899999999985 8


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCc-----eeeccHHHHHhCCCEEEeeecCCCCC--CCCHHHHHHHHhCCCCCCCCceE
Q 025336          155 LSEALETTKVGKGKVIVIGVGVDT-----MVPLNVIALACGGRTLKGTTFGGIKT--KSDLPILLDKCKNKEFKLHQLLT  227 (254)
Q Consensus       155 ~~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
                      +..++++++++ |+++.+|...+.     ...++...++.+++++.|+....+..  .+.++++++++++|+++  +.+.
T Consensus       238 ~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~--~~~~  314 (345)
T 2j3h_A          238 LDAVLVNMNMH-GRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKIT--YVED  314 (345)
T ss_dssp             HHHHHTTEEEE-EEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSC--CCEE
T ss_pred             HHHHHHHHhcC-CEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCc--Cccc
Confidence            89999999999 999999875431     23455556777999999976543211  12388899999999955  5666


Q ss_pred             EEeecccHHHHHHHHcCCCe-eEEEEeC
Q 025336          228 HHVKLEEIDKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++|+|+++++||+.+.+++. +|+||++
T Consensus       315 ~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (345)
T 2j3h_A          315 VADGLEKAPEALVGLFHGKNVGKQVVVV  342 (345)
T ss_dssp             EEESGGGSHHHHHHHHTTCCSSEEEEES
T ss_pred             ccCCHHHHHHHHHHHHcCCCceEEEEEe
Confidence            68999999999999988776 5999874

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.97  E-value=2.6e-31  Score=260.97  Aligned_cols=237  Identities=18%  Similarity=0.190  Sum_probs=199.4

Q ss_pred             cccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHH
Q 025336            8 MSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAV   86 (254)
Q Consensus         8 ~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~   86 (254)
                      ..+ ||+|+++...|+|+||+++|+..++++|+++++++|++++++++|||+++...+++++|++|||+|+ |++|++++
T Consensus      1607 V~v-GdrV~g~~~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAi 1685 (2512)
T 2vz8_A         1607 DAS-GRRVMGMVPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAI 1685 (2512)
T ss_dssp             ETT-SCCEEEECSSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHH
T ss_pred             Ecc-CCEEEEeecCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHH
Confidence            346 9999998777999999999999999999999999999999999999999988899999999999976 99999999


Q ss_pred             HHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHc
Q 025336           87 DGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT  162 (254)
Q Consensus        87 ~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  162 (254)
                      |+||..|+ +|++++.++++.+++++    +|+++++++++   .++.+.+++.++++++|+||||++++ .+..+++++
T Consensus      1686 qlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~---~~~~~~i~~~t~g~GvDvVld~~g~~-~l~~~l~~L 1760 (2512)
T 2vz8_A         1686 AIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSRD---TSFEQHVLRHTAGKGVDLVLNSLAEE-KLQASVRCL 1760 (2512)
T ss_dssp             HHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESSS---SHHHHHHHHTTTSCCEEEEEECCCHH-HHHHHHTTE
T ss_pred             HHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCCC---HHHHHHHHHhcCCCCceEEEECCCch-HHHHHHHhc
Confidence            99999999 99999999999999986    78899999988   88999999999888999999999865 789999999


Q ss_pred             ccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCCC--CCCCHHHHHHHH----hCCCCCCCCceEEEeecccH
Q 025336          163 KVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGIK--TKSDLPILLDKC----KNKEFKLHQLLTHHVKLEEI  235 (254)
Q Consensus       163 ~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  235 (254)
                      +++ |+++.+|.... ...... ..++.+++++.++....+.  ....++++++++    .+++  ++++++++||++++
T Consensus      1761 ~~~-Gr~V~iG~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~--l~p~i~~~f~l~ei 1836 (2512)
T 2vz8_A         1761 AQH-GRFLEIGKFDLSNNHALG-MAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGV--VQPLKCTVFPRTKV 1836 (2512)
T ss_dssp             EEE-EEEEECCCHHHHTTCEEE-GGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTC--SCCCCEEEEESSTH
T ss_pred             CCC-cEEEEeecccccccCccc-ccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCC--cCCCcceEecHHHH
Confidence            999 99999986432 111122 2344589999998754322  123455555554    4666  55678899999999


Q ss_pred             HHHHHHHcCCCe-eEEEEeC
Q 025336          236 DKAIQLLKQPDC-VKVLITI  254 (254)
Q Consensus       236 ~~a~~~~~~~~~-~k~vi~~  254 (254)
                      ++||+.+.+++. +|+||++
T Consensus      1837 ~eA~~~l~~g~~~GKvVi~~ 1856 (2512)
T 2vz8_A         1837 EAAFRYMAQGKHIGKVVIQV 1856 (2512)
T ss_dssp             HHHHHHHHTTCCSSEEEEEC
T ss_pred             HHHHHhhhccCccceEEEEC
Confidence            999999988876 5999864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.94  E-value=1.9e-26  Score=175.57  Aligned_cols=184  Identities=17%  Similarity=0.254  Sum_probs=140.7

Q ss_pred             CceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           33 NYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        33 ~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      +.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4688999999999999999999999999977789999999999995 9999999999999999 9999999999998999


Q ss_pred             hcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhC
Q 025336          112 AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACG  190 (254)
Q Consensus       112 ~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~  190 (254)
                      ++|++.+++..+   .+..+.+.+.+.+.++|+++|++|.. .++.++++++++ |+++.+|.... ...+++.. .+.+
T Consensus        81 ~~g~~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~  154 (198)
T 1pqw_A           81 RLGVEYVGDSRS---VDFADEILELTDGYGVDVVLNSLAGE-AIQRGVQILAPG-GRFIELGKKDVYADASLGLA-ALAK  154 (198)
T ss_dssp             TTCCSEEEETTC---STHHHHHHHHTTTCCEEEEEECCCTH-HHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGG-GGTT
T ss_pred             HcCCCEEeeCCc---HHHHHHHHHHhCCCCCeEEEECCchH-HHHHHHHHhccC-CEEEEEcCCCCcCcCcCChh-HhcC
Confidence            999988888877   77888888877666899999999875 789999999999 99999997653 12223332 3358


Q ss_pred             CCEEEeeec------CCCCCCCCHHHHHHHHhCCCCCCC
Q 025336          191 GRTLKGTTF------GGIKTKSDLPILLDKCKNKEFKLH  223 (254)
Q Consensus       191 ~~~i~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~  223 (254)
                      ++++.+...      ......+.++++++++++|++++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  193 (198)
T 1pqw_A          155 SASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL  193 (198)
T ss_dssp             TCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             CcEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCC
Confidence            888886533      110013568899999999997654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.05  E-value=3.1e-10  Score=93.54  Aligned_cols=138  Identities=19%  Similarity=0.148  Sum_probs=96.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce--EeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD--FINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +++|+|+|+|++|+++++.++.+|+ +|+++++++++.+.+++.++..  +++...   .++.+.+.      ++|++|+
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~DvVI~  236 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA------EADLLIG  236 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH------TCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH---HHHHHHHc------CCCEEEE
Confidence            4899999999999999999999999 9999999999999988776543  343332   34433332      7999999


Q ss_pred             cCCChhH------HHHHHHHcccCCcEEEEEccCCCc------eeeccHHHHHhCCCEEEeeecCCC--C-------CCC
Q 025336          148 CTGVPSL------LSEALETTKVGKGKVIVIGVGVDT------MVPLNVIALACGGRTLKGTTFGGI--K-------TKS  206 (254)
Q Consensus       148 ~~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~i~g~~~~~~--~-------~~~  206 (254)
                      |++.+..      .+..++.++++ |+++.++...+.      ..+++...+..+++++.+......  .       ...
T Consensus       237 ~~~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~  315 (361)
T 1pjc_A          237 AVLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNS  315 (361)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHH
T ss_pred             CCCcCCCCCCeecCHHHHhhCCCC-CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHH
Confidence            9986532      56778899999 999999876431      223333344457788777531100  0       022


Q ss_pred             CHHHHHHHHhCC
Q 025336          207 DLPILLDKCKNK  218 (254)
Q Consensus       207 ~~~~~~~~~~~~  218 (254)
                      .++.+++++.+|
T Consensus       316 ~~~~l~~l~~~G  327 (361)
T 1pjc_A          316 TLPYVVKLANQG  327 (361)
T ss_dssp             HHHHHHHHHHHG
T ss_pred             HHHHHHHHHhCC
Confidence            356677777766

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.04  E-value=1.8e-11  Score=102.49  Aligned_cols=160  Identities=13%  Similarity=0.144  Sum_probs=112.9

Q ss_pred             CCCCcccccCCceee------e---eeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhc---CCCC
Q 025336            2 LDGTSRMSVRGQKLY------H---IFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEA---EVEK   69 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~------~---~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~   69 (254)
                      |+|+..+.+ |+.+.      +   ....|++++|+..+...++++|+.++.+.++.. .+..++|.++....   +-.+
T Consensus        89 ~~Glds~~v-Ge~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~  166 (404)
T 1gpj_A           89 ASGLESMMV-GEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLH  166 (404)
T ss_dssp             HTTTTSSST-TCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCT
T ss_pred             ccCCCCCcC-CcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhcccc
Confidence            466777777 87652      1   122377899999998889999988877776553 56667777653222   1247


Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccH-HHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKK-EKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      |++|+|+|+|.+|.++++.++..|+.+|++++++.++. +.++++|++ ++++     .++.+.+      .++|+|++|
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~-----~~l~~~l------~~aDvVi~a  234 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF-----DELVDHL------ARSDVVVSA  234 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG-----GGHHHHH------HTCSEEEEC
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-eecH-----HhHHHHh------cCCCEEEEc
Confidence            89999999999999999999999987899999998886 677888876 3432     2333322      279999999


Q ss_pred             CCChhHHH--HHHHH--c--ccCCcEEEEEccCC
Q 025336          149 TGVPSLLS--EALET--T--KVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~~~~--~~~~~--l--~~~~G~~v~~g~~~  176 (254)
                      ++.+..+.  ..+..  +  +++ +.++.++...
T Consensus       235 t~~~~~~~~~~~l~~~~lk~r~~-~~~v~vdia~  267 (404)
T 1gpj_A          235 TAAPHPVIHVDDVREALRKRDRR-SPILIIDIAN  267 (404)
T ss_dssp             CSSSSCCBCHHHHHHHHHHCSSC-CCEEEEECCS
T ss_pred             cCCCCceecHHHHHHHHHhccCC-CCEEEEEccC
Confidence            98653321  34444  3  556 7777777654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.95  E-value=2.4e-09  Score=89.01  Aligned_cols=146  Identities=21%  Similarity=0.198  Sum_probs=98.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCC-------------CC---CchHHH
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDD-------------EP---NKSISE  131 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~-------------~~---~~~~~~  131 (254)
                      ++++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.++++|++.+ ++..+             .+   .....+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999 89999999999999988998754 23211             00   000122


Q ss_pred             HHHHhhCCCCccEEEEcC---CChh--H-HHHHHHHcccCCcEEEEEccCCCcee--eccHHHHHhCCCEEEeeecCCCC
Q 025336          132 LVKGITHGMGVDYCFECT---GVPS--L-LSEALETTKVGKGKVIVIGVGVDTMV--PLNVIALACGGRTLKGTTFGGIK  203 (254)
Q Consensus       132 ~i~~~~~~~~~d~v~d~~---g~~~--~-~~~~~~~l~~~~G~~v~~g~~~~~~~--~~~~~~~~~~~~~i~g~~~~~~~  203 (254)
                      .+.+...  ++|++++|+   |.+.  . ....++.++++ +.++.++...+..+  +.+...+..+++++.|....   
T Consensus       250 ~l~~~~~--~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~---  323 (384)
T 1l7d_A          250 AVLKELV--KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNV---  323 (384)
T ss_dssp             HHHHHHT--TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSG---
T ss_pred             HHHHHhC--CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCC---
Confidence            2444333  799999999   5321  2 36788899999 99999986432111  12222344578888886421   


Q ss_pred             CCCCHHHHHHHHhCCCCC
Q 025336          204 TKSDLPILLDKCKNKEFK  221 (254)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~  221 (254)
                      .....+.+.+++.++.++
T Consensus       324 p~~~~~~a~~l~~~~~~~  341 (384)
T 1l7d_A          324 PSRVAADASPLFAKNLLN  341 (384)
T ss_dssp             GGGGHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhHHH
Confidence            123355577888777654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.88  E-value=6e-09  Score=86.35  Aligned_cols=119  Identities=20%  Similarity=0.174  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+++ +|+....+...  ..++.+.+.      ++|++++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~--~~~l~~~l~------~aDvVi~  237 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS--AYELEGAVK------RADLVIG  237 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC--HHHHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC--HHHHHHHHc------CCCEEEE
Confidence            57899999999999999999999999 99999999999888876 67653222221  033333221      7899999


Q ss_pred             cCCChhH------HHHHHHHcccCCcEEEEEccCCC------ceeeccHHHHHhCCCEEEee
Q 025336          148 CTGVPSL------LSEALETTKVGKGKVIVIGVGVD------TMVPLNVIALACGGRTLKGT  197 (254)
Q Consensus       148 ~~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~i~g~  197 (254)
                      |++.+..      ....++.++++ |.++.++...+      .+.+++...+..+++.+.+.
T Consensus       238 ~~~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~  298 (377)
T 2vhw_A          238 AVLVPGAKAPKLVSNSLVAHMKPG-AVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCV  298 (377)
T ss_dssp             CCCCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECB
T ss_pred             CCCcCCCCCcceecHHHHhcCCCC-cEEEEEecCCCCccccccCCCCCCCEEEECCEEEEec
Confidence            9986533      57888999999 99999985432      12233322333467776554

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.85  E-value=1.2e-08  Score=84.29  Aligned_cols=141  Identities=22%  Similarity=0.194  Sum_probs=88.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      ++++|+|+|+|.+|+.+++.++..|+ +|+++++++++.+.+++ +|.....+..+  ..++.+.+.      ++|++++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~~~------~~DvVi~  235 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT--EANIKKSVQ------HADLLIG  235 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC--HHHHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC--HHHHHHHHh------CCCEEEE
Confidence            46899999999999999999999999 99999999998888765 77653333222  133333321      7899999


Q ss_pred             cCCChhH------HHHHHHHcccCCcEEEEEccCCCc------eeeccHHHHHhCCCEEEeeecCCCC---------CCC
Q 025336          148 CTGVPSL------LSEALETTKVGKGKVIVIGVGVDT------MVPLNVIALACGGRTLKGTTFGGIK---------TKS  206 (254)
Q Consensus       148 ~~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~i~g~~~~~~~---------~~~  206 (254)
                      |++.+..      ....++.++++ |+++.++...+.      +.+++...+..+++.+.+.......         ...
T Consensus       236 ~~g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~  314 (369)
T 2eez_A          236 AVLVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQ  314 (369)
T ss_dssp             CCC-------CCSCHHHHTTSCTT-CEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHH
T ss_pred             CCCCCccccchhHHHHHHHhhcCC-CEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHH
Confidence            9986531      56788899998 999999876531      1223333344467777765311100         123


Q ss_pred             CHHHHHHHHhCCC
Q 025336          207 DLPILLDKCKNKE  219 (254)
Q Consensus       207 ~~~~~~~~~~~~~  219 (254)
                      .++.+++++.+|.
T Consensus       315 ~~~~l~~l~~~g~  327 (369)
T 2eez_A          315 TLPYVLKLAEKGL  327 (369)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCh
Confidence            3566677776653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.80  E-value=2.9e-08  Score=82.77  Aligned_cols=126  Identities=22%  Similarity=0.301  Sum_probs=85.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCC--C--------CchH----HHHH
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDE--P--------NKSI----SELV  133 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~--~--------~~~~----~~~i  133 (254)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.++++|++.+. +..+.  .        ..++    ...+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            57899999999999999999999999 999999999999999999987542 11000  0        0111    1123


Q ss_pred             HHhhCCCCccEEEEcCCCh-----hHH-HHHHHHcccCCcEEEEEccCCCceeecc--HH-HHHhCCCEEEeee
Q 025336          134 KGITHGMGVDYCFECTGVP-----SLL-SEALETTKVGKGKVIVIGVGVDTMVPLN--VI-ALACGGRTLKGTT  198 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~-----~~~-~~~~~~l~~~~G~~v~~g~~~~~~~~~~--~~-~~~~~~~~i~g~~  198 (254)
                      .+...  ++|++++|++.+     ..+ ...++.++++ +.++.++...+..+...  .. .+..+++++.|..
T Consensus       250 ~e~~~--~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          250 AAQAK--EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHH--HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCS
T ss_pred             HHHhC--CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeC
Confidence            33332  689999995321     222 5788999999 99999996532122221  11 1345889998864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.74  E-value=3.3e-08  Score=84.02  Aligned_cols=119  Identities=18%  Similarity=0.265  Sum_probs=89.7

Q ss_pred             hhhhhHHHHHhc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHH
Q 025336           54 FTTGFGAAWKEA-EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        54 ~~ta~~~l~~~~-~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      ..+++.++.... ...+|++|+|+|.|.+|+.+++.++.+|+ +|+++++++++.+.++++|++ +++        +.+.
T Consensus       257 ~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~--------l~e~  326 (494)
T 3ce6_A          257 RHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT--------VEEA  326 (494)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC--------HHHH
T ss_pred             hhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec--------HHHH
Confidence            345555542221 26789999999999999999999999999 999999999998888889986 321        1111


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHH-HHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCC
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLS-EALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGR  192 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  192 (254)
                      +      .++|++++|++....+. ..++.++++ |+++.+|....   .++...+..+.+
T Consensus       327 l------~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~~~---eId~~aL~~~aL  377 (494)
T 3ce6_A          327 I------GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHFDN---EIDMAGLERSGA  377 (494)
T ss_dssp             G------GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSSGG---GBCHHHHHHTTC
T ss_pred             H------hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCCCC---ccCHHHHHHhhh
Confidence            1      27899999999776565 788999999 99999987642   345556654444

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.55  E-value=1.1e-07  Score=74.08  Aligned_cols=100  Identities=12%  Similarity=0.052  Sum_probs=74.2

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CC-c--eEeCCCCCCCchHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GM-T--DFINPDDEPNKSISELVK  134 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~-~--~v~~~~~~~~~~~~~~i~  134 (254)
                      .....++++++||.+|+| .|..+..+++. +. +|++++.+++..+.+++.    +. .  .++..      +..    
T Consensus        84 ~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~------d~~----  150 (248)
T 2yvl_A           84 ALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV------DFK----  150 (248)
T ss_dssp             HHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECS------CTT----
T ss_pred             HHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEc------Chh----
Confidence            366778899999999998 59999999998 66 999999999988888753    32 1  12211      111    


Q ss_pred             Hhh-CCCCccEEEEcCCCh-hHHHHHHHHcccCCcEEEEEccC
Q 025336          135 GIT-HGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       135 ~~~-~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +.. .+.+||+|+...+.+ ..++.+.+.++++ |+++.....
T Consensus       151 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  192 (248)
T 2yvl_A          151 DAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLPT  192 (248)
T ss_dssp             TSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEESS
T ss_pred             hcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence            111 234799999877765 6789999999999 999887643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.44  E-value=2e-06  Score=61.96  Aligned_cols=90  Identities=19%  Similarity=0.178  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .++.+|+|+|+|.+|+.+++.++..|. +|+++++++++.+.++ ..|...+. ...   .+ .+.+.+. +..++|++|
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~~-~d~---~~-~~~l~~~-~~~~ad~Vi   89 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTVV-GDA---AE-FETLKEC-GMEKADMVF   89 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEEE-SCT---TS-HHHHHTT-TGGGCSEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEEE-ecC---CC-HHHHHHc-CcccCCEEE
Confidence            467899999999999999999999999 9999999999888877 66765432 221   11 1223332 223799999


Q ss_pred             EcCCChhHHHHHHHHccc
Q 025336          147 ECTGVPSLLSEALETTKV  164 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~  164 (254)
                      .|++.......+...++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHH
T ss_pred             EEeCCcHHHHHHHHHHHH
Confidence            999987554555555544

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.43  E-value=1.7e-06  Score=70.92  Aligned_cols=104  Identities=23%  Similarity=0.279  Sum_probs=76.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC----C--CCCc--------hHHHHHH
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD----D--EPNK--------SISELVK  134 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~----~--~~~~--------~~~~~i~  134 (254)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++.++++++.+.++++|++.+ +..    .  ....        .....+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~-~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWL-DLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEEC-CCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE-eccccccccccchhhhhHHHHhhhHHHHH
Confidence            67899999999999999999999999 99999999999999999987633 110    0  0000        0112233


Q ss_pred             HhhCCCCccEEEEcCCChh------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          135 GITHGMGVDYCFECTGVPS------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +..  ...|+||.|+..+.      ..+..++.++++ ..++.++...+
T Consensus       261 e~l--~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~G  306 (381)
T 3p2y_A          261 DAI--TKFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGETG  306 (381)
T ss_dssp             HHH--TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGT
T ss_pred             HHH--hcCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCCC
Confidence            332  38999999873321      246888999998 99999987654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.42  E-value=1.1e-06  Score=72.72  Aligned_cols=126  Identities=22%  Similarity=0.259  Sum_probs=83.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeC-------------CCC-CCCch---HHH
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN-------------PDD-EPNKS---ISE  131 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~-------------~~~-~~~~~---~~~  131 (254)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++.++++++.+.++++|++.+-.             +.. .+++.   ...
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            57899999999999999999999999 9999999999999999998753211             000 00000   011


Q ss_pred             HHHHhhCCCCccEEEEcCCChh------HHHHHHHHcccCCcEEEEEccCCCceeec--cHHHHHhCCCEEEeee
Q 025336          132 LVKGITHGMGVDYCFECTGVPS------LLSEALETTKVGKGKVIVIGVGVDTMVPL--NVIALACGGRTLKGTT  198 (254)
Q Consensus       132 ~i~~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~~~~~~--~~~~~~~~~~~i~g~~  198 (254)
                      .+.+..  .+.|++|.|+..+.      ..+..++.++++ ..++.++...+..+..  +...+..+++.+.+..
T Consensus       268 ~l~e~l--~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          268 LVAEHI--AKQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHH--HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGGGTCSBTTCCTTEEEEETTEEEEECS
T ss_pred             HHHHHh--cCCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCCCCCCccccCCCCeEEECCEEEEEeC
Confidence            222222  28999999964221      246888999998 9999998644311111  1111223677777764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.38  E-value=2.3e-07  Score=66.11  Aligned_cols=107  Identities=14%  Similarity=0.088  Sum_probs=73.8

Q ss_pred             hhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHH-HHhcCCceEeCCCCCCCchHHHH
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK-GEAFGMTDFINPDDEPNKSISEL  132 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~  132 (254)
                      +..++.++ +......+.+|+|+|+|.+|...++.++..|+ +|++.++++++.+. +++++... ....     ++.+.
T Consensus         6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~~-~~~~-----~~~~~   77 (144)
T 3oj0_A            6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEY-VLIN-----DIDSL   77 (144)
T ss_dssp             CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCEE-EECS-----CHHHH
T ss_pred             ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCce-Eeec-----CHHHH
Confidence            34455554 33333458999999999999999999988999 69999999888765 56677542 2222     23333


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +.      ++|+++.|++.+..+.. ...++++ +.++.++.+.
T Consensus        78 ~~------~~Divi~at~~~~~~~~-~~~l~~g-~~vid~~~p~  113 (144)
T 3oj0_A           78 IK------NNDVIITATSSKTPIVE-ERSLMPG-KLFIDLGNPP  113 (144)
T ss_dssp             HH------TCSEEEECSCCSSCSBC-GGGCCTT-CEEEECCSSC
T ss_pred             hc------CCCEEEEeCCCCCcEee-HHHcCCC-CEEEEccCCc
Confidence            32      78999999987532222 2567787 8888887754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.35  E-value=7.9e-06  Score=55.57  Aligned_cols=94  Identities=12%  Similarity=0.082  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +.+|+|+|+|.+|..+++.+...| . +|+++++++++.+.++..+...+ .+..+   .   +.+.+...  ++|++|+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~~---~---~~~~~~~~--~~d~vi~   75 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAKD---E---AGLAKALG--GFDAVIS   75 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTTC---H---HHHHHHTT--TCSEEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCCC---H---HHHHHHHc--CCCEEEE
Confidence            468999999999999999999999 6 89999999988888876665433 33332   2   23333322  7999999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEc
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      |++.....+....+...+ ..++.++
T Consensus        76 ~~~~~~~~~~~~~~~~~g-~~~~~~~  100 (118)
T 3ic5_A           76 AAPFFLTPIIAKAAKAAG-AHYFDLT  100 (118)
T ss_dssp             CSCGGGHHHHHHHHHHTT-CEEECCC
T ss_pred             CCCchhhHHHHHHHHHhC-CCEEEec
Confidence            998764433333344444 5555443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.25  E-value=5.7e-07  Score=71.30  Aligned_cols=100  Identities=12%  Similarity=0.132  Sum_probs=73.0

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ..+++++++||.+|+|+.+..++.+++..|+ +|++++.+++..+.+++.    |.+.+ ....   .+..    ++.+ 
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v-~~v~---gDa~----~l~d-  186 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGV-NVIT---GDET----VIDG-  186 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSE-EEEE---SCGG----GGGG-
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCe-EEEE---Cchh----hCCC-
Confidence            4688999999999998767777778888899 999999999999988763    43221 1111   1111    1222 


Q ss_pred             CCccEEEEcCCCh---hHHHHHHHHcccCCcEEEEEcc
Q 025336          140 MGVDYCFECTGVP---SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       140 ~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ..||+|+-....+   ..++.+.+.++|+ |+++....
T Consensus       187 ~~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~  223 (298)
T 3fpf_A          187 LEFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTY  223 (298)
T ss_dssp             CCCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred             CCcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcC
Confidence            4899999655432   4688999999999 99987664

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.17  E-value=2.5e-05  Score=57.77  Aligned_cols=95  Identities=22%  Similarity=0.281  Sum_probs=67.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +++|+|+|.|.+|..+++.++.. |. +|+++++++++.+.+++.|...+. |..+   .+   .+.+.++-.++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~---~~---~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD---PD---FWERILDTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC---HH---HHHTBCSCCCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC---HH---HHHhccCCCCCCEEEE
Confidence            56899999999999999999998 99 899999999999988888876543 3332   22   2333313348999999


Q ss_pred             cCCChhHHHHHHHH---cccCCcEEEEE
Q 025336          148 CTGVPSLLSEALET---TKVGKGKVIVI  172 (254)
Q Consensus       148 ~~g~~~~~~~~~~~---l~~~~G~~v~~  172 (254)
                      ++++......+...   +.+. .+++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~-~~ii~~  138 (183)
T 3c85_A          112 AMPHHQGNQTALEQLQRRNYK-GQIAAI  138 (183)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred             eCCChHHHHHHHHHHHHHCCC-CEEEEE
Confidence            99876443333333   4444 565554

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.15  E-value=8.6e-06  Score=67.57  Aligned_cols=94  Identities=23%  Similarity=0.361  Sum_probs=73.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .-.|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.+...+...|.. +.        ++.+    ..  ...|+++
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~-v~--------~Lee----al--~~ADIVi  280 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFR-LV--------KLNE----VI--RQVDIVI  280 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CHHH----HT--TTCSEEE
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCE-ec--------cHHH----HH--hcCCEEE
Confidence            4479999999999999999999999999 999999988777666666743 21        1222    21  1789999


Q ss_pred             EcCCChhHHH-HHHHHcccCCcEEEEEccCCC
Q 025336          147 ECTGVPSLLS-EALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       147 d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .|.|....+. ..+..++++ +.++.+|....
T Consensus       281 ~atgt~~lI~~e~l~~MK~g-ailINvgrg~~  311 (435)
T 3gvp_A          281 TCTGNKNVVTREHLDRMKNS-CIVCNMGHSNT  311 (435)
T ss_dssp             ECSSCSCSBCHHHHHHSCTT-EEEEECSSTTT
T ss_pred             ECCCCcccCCHHHHHhcCCC-cEEEEecCCCc
Confidence            9988665555 888999998 99999887653

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.11  E-value=2.3e-05  Score=62.59  Aligned_cols=96  Identities=22%  Similarity=0.232  Sum_probs=72.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      -+|.+|+|+|.|.+|+.+++.++..|+ +|++.+++.++.+.++++|+.. ++.     .++.+    ..  ...|+++.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~-----~~l~~----~l--~~aDvVi~  219 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHI-----SKAAQ----EL--RDVDVCIN  219 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEG-----GGHHH----HT--TTCSEEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cCh-----hhHHH----Hh--cCCCEEEE
Confidence            368899999999999999999999999 9999999988877777788653 221     22222    21  27899999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ++...-.-...+..++++ +.++.++..+.
T Consensus       220 ~~p~~~i~~~~l~~mk~~-~~lin~ar~~~  248 (293)
T 3d4o_A          220 TIPALVVTANVLAEMPSH-TFVIDLASKPG  248 (293)
T ss_dssp             CCSSCCBCHHHHHHSCTT-CEEEECSSTTC
T ss_pred             CCChHHhCHHHHHhcCCC-CEEEEecCCCC
Confidence            987542224567788998 99999886543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.04  E-value=9.5e-05  Score=52.08  Aligned_cols=94  Identities=11%  Similarity=0.079  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .++|+|.|.|.+|..+++.++..|. +|+++++++++.+.+++.|...+. |..+   .+.   +++. +-.++|+++-+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~~---~~~---l~~a-~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAAN---EEI---MQLA-HLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTTS---HHH---HHHT-TGGGCSEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCCC---HHH---HHhc-CcccCCEEEEE
Confidence            4679999999999999999999999 999999999999999888876544 3222   332   3332 33489999999


Q ss_pred             CCChhHHH---HHHHHcccCCcEEEEE
Q 025336          149 TGVPSLLS---EALETTKVGKGKVIVI  172 (254)
Q Consensus       149 ~g~~~~~~---~~~~~l~~~~G~~v~~  172 (254)
                      ++......   ...+.+.+. .+++..
T Consensus        79 ~~~~~~n~~~~~~a~~~~~~-~~iiar  104 (140)
T 3fwz_A           79 IPNGYEAGEIVASARAKNPD-IEIIAR  104 (140)
T ss_dssp             CSCHHHHHHHHHHHHHHCSS-SEEEEE
T ss_pred             CCChHHHHHHHHHHHHHCCC-CeEEEE
Confidence            98753222   334445565 665543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.99  E-value=4.1e-05  Score=61.32  Aligned_cols=96  Identities=19%  Similarity=0.228  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      -++.+|+|+|.|.+|+.+++.++..|+ +|++.+++.++.+.++++|.. +++.     .++    .+..  ...|+|+.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~-----~~l----~~~l--~~aDvVi~  221 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT-----DEL----KEHV--KDIDICIN  221 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG-----GGH----HHHS--TTCSEEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch-----hhH----HHHh--hCCCEEEE
Confidence            368899999999999999999999999 999999998877777677764 2221     222    2222  27899999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ++...-.-...+..++++ +.++.++..+.
T Consensus       222 ~~p~~~i~~~~~~~mk~g-~~lin~a~g~~  250 (300)
T 2rir_A          222 TIPSMILNQTVLSSMTPK-TLILDLASRPG  250 (300)
T ss_dssp             CCSSCCBCHHHHTTSCTT-CEEEECSSTTC
T ss_pred             CCChhhhCHHHHHhCCCC-CEEEEEeCCCC
Confidence            998642224567788898 99999887544

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.97  E-value=2e-05  Score=66.59  Aligned_cols=91  Identities=21%  Similarity=0.303  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      -.|++++|+|+|++|+.+++.++..|+ +|+++++++++.+.+...|.+ +.+..     +       .  ...+|++++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~le-----e-------~--~~~aDvVi~  326 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTLE-----D-------V--VSEADIFVT  326 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGG-----G-------T--TTTCSEEEE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCHH-----H-------H--HHhcCEEEe
Confidence            378999999999999999999999999 999999998887777777753 22111     1       1  127899999


Q ss_pred             cCCChhHHH-HHHHHcccCCcEEEEEccC
Q 025336          148 CTGVPSLLS-EALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       148 ~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  175 (254)
                      +.|....+. ..++.++++ +.++..|..
T Consensus       327 atG~~~vl~~e~l~~mk~g-aiVvNaG~~  354 (488)
T 3ond_A          327 TTGNKDIIMLDHMKKMKNN-AIVCNIGHF  354 (488)
T ss_dssp             CSSCSCSBCHHHHTTSCTT-EEEEESSST
T ss_pred             CCCChhhhhHHHHHhcCCC-eEEEEcCCC
Confidence            998765553 478889998 888888865

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.95  E-value=5.8e-05  Score=59.62  Aligned_cols=103  Identities=22%  Similarity=0.259  Sum_probs=72.5

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhc----CC-ceEeCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAF----GM-TDFINPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~~~~~i~~  135 (254)
                      .....+.++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++.    +. +.+ ....   .++.+.   
T Consensus       105 ~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-~~~~---~d~~~~---  176 (277)
T 1o54_A          105 AMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-TIKV---RDISEG---  176 (277)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-EEEC---CCGGGC---
T ss_pred             HHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCE-EEEE---CCHHHc---
Confidence            3566788999999999886 888889999864 23999999999888887653    43 211 1111   222111   


Q ss_pred             hhCCCCccEEEEcCCCh-hHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      + ....||+|+-....+ ..+..+.+.|+++ |+++....
T Consensus       177 ~-~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  214 (277)
T 1o54_A          177 F-DEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP  214 (277)
T ss_dssp             C-SCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred             c-cCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence            1 223799999766544 5788999999999 99888764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.93  E-value=5.6e-05  Score=62.93  Aligned_cols=93  Identities=19%  Similarity=0.228  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .-.|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.+...+...|.. +.        ++.+.+      ...|+++
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~-vv--------~LeElL------~~ADIVv  307 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFE-VV--------TLDDAA------STADIVV  307 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE-EC--------CHHHHG------GGCSEEE
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCce-ec--------cHHHHH------hhCCEEE
Confidence            3478999999999999999999999999 999998888766556566653 22        122221      1789999


Q ss_pred             EcCCChhHH-HHHHHHcccCCcEEEEEccCC
Q 025336          147 ECTGVPSLL-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       147 d~~g~~~~~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .+.+....+ ...+..++++ +.++-+|...
T Consensus       308 ~atgt~~lI~~e~l~~MK~G-AILINvGRgd  337 (464)
T 3n58_A          308 TTTGNKDVITIDHMRKMKDM-CIVGNIGHFD  337 (464)
T ss_dssp             ECCSSSSSBCHHHHHHSCTT-EEEEECSSST
T ss_pred             ECCCCccccCHHHHhcCCCC-eEEEEcCCCC
Confidence            998876444 5888899998 8888888754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.86  E-value=6.8e-05  Score=52.72  Aligned_cols=75  Identities=20%  Similarity=0.313  Sum_probs=54.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +++|+|+|+|.+|...++.++..|. +|+++++++++.+.+++.+...+. +..+      .+.+.+. +-.++|+++.+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~d~~~------~~~l~~~-~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANATE------ENELLSL-GIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEEEECCTTC------HHHHHTT-TGGGCSEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEEEEeCCCC------HHHHHhc-CCCCCCEEEEC
Confidence            4679999999999999999999998 899999988877766666654332 2221      2233332 12379999999


Q ss_pred             CCCh
Q 025336          149 TGVP  152 (254)
Q Consensus       149 ~g~~  152 (254)
                      ++..
T Consensus        78 ~~~~   81 (144)
T 2hmt_A           78 IGAN   81 (144)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            9974

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.84  E-value=0.00014  Score=51.09  Aligned_cols=75  Identities=25%  Similarity=0.329  Sum_probs=57.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      ..+|+|.|+|.+|..+++.+...|. +|+++++++++.+.+++.+...+. |..+   ++   .+++. +-.++|+++.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~---~~---~l~~~-~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTD---ES---FYRSL-DLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTC---HH---HHHHS-CCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCC---HH---HHHhC-CcccCCEEEEe
Confidence            4579999999999999999999999 999999999999888887765433 3332   33   23333 33479999999


Q ss_pred             CCCh
Q 025336          149 TGVP  152 (254)
Q Consensus       149 ~g~~  152 (254)
                      ++..
T Consensus        78 ~~~~   81 (141)
T 3llv_A           78 GSDD   81 (141)
T ss_dssp             CSCH
T ss_pred             cCCH
Confidence            9964

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.82  E-value=7.5e-05  Score=62.15  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=77.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      -.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|...         .++.+.+      ...|+++.
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~---------~sL~eal------~~ADVVil  272 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQV---------LLVEDVV------EEAHIFVT  272 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---------CCHHHHT------TTCSEEEE
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCee---------cCHHHHH------hhCCEEEE
Confidence            368999999999999999999999999 9999999887777777777532         1122222      16899998


Q ss_pred             cCCChhHHH-HHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEe
Q 025336          148 CTGVPSLLS-EALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKG  196 (254)
Q Consensus       148 ~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g  196 (254)
                      +.+....+. ..+..++++ ..++.++...   ..++...+..+..+..+
T Consensus       273 t~gt~~iI~~e~l~~MK~g-AIVINvgRg~---vEID~~~L~~~~~~~~~  318 (436)
T 3h9u_A          273 TTGNDDIITSEHFPRMRDD-AIVCNIGHFD---TEIQVAWLKANAKERVE  318 (436)
T ss_dssp             CSSCSCSBCTTTGGGCCTT-EEEEECSSSG---GGBCHHHHHHHCSEEEE
T ss_pred             CCCCcCccCHHHHhhcCCC-cEEEEeCCCC---CccCHHHHHhhcCceEe
Confidence            887654444 667788888 8888887542   33455555544444443

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.78  E-value=0.00015  Score=55.96  Aligned_cols=105  Identities=13%  Similarity=0.108  Sum_probs=69.0

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           66 EVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        66 ~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      .+.+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+..+.-... ...|..+   ++-.+.+-+..  .++|
T Consensus         7 dlf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~--g~iD   80 (242)
T 4b79_A            7 DIYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD---SQRLQRLFEAL--PRLD   80 (242)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC---HHHHHHHHHHC--SCCS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC---HHHHHHHHHhc--CCCC
Confidence            3457999999986 8999999999999999 999999988776543221111 1234443   43333333322  2799


Q ss_pred             EEEEcCCChh-----------------------HHHHHHHHcc-cCCcEEEEEccCCC
Q 025336          144 YCFECTGVPS-----------------------LLSEALETTK-VGKGKVIVIGVGVD  177 (254)
Q Consensus       144 ~v~d~~g~~~-----------------------~~~~~~~~l~-~~~G~~v~~g~~~~  177 (254)
                      +++++.|...                       ..+.++..++ .+ |++|.+++..+
T Consensus        81 iLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~  137 (242)
T 4b79_A           81 VLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG-GSILNIASMYS  137 (242)
T ss_dssp             EEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-EEEEEECCGGG
T ss_pred             EEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeeccc
Confidence            9999988411                       1233444554 45 99998887543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.78  E-value=6e-05  Score=56.77  Aligned_cols=101  Identities=16%  Similarity=0.184  Sum_probs=71.4

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-e--EeCCCCCCCchHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-D--FINPDDEPNKSISELVK  134 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~--v~~~~~~~~~~~~~~i~  134 (254)
                      .....+.++++||-+|+|. |..++.+++. +. +|++++.+++..+.+++    +|.. .  ++..+-   .+   .  
T Consensus        48 l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~---~--  116 (204)
T 3njr_A           48 LAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---PA---A--  116 (204)
T ss_dssp             HHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT---TG---G--
T ss_pred             HHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch---hh---h--
Confidence            3566788999999999876 8888888888 77 99999999998888765    3433 2  222221   11   1  


Q ss_pred             HhhCCCCccEEEEcCCCh-hHHHHHHHHcccCCcEEEEEccC
Q 025336          135 GITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                       +.....||+|+...+.. ..++.+.+.++++ |+++.....
T Consensus       117 -~~~~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~~  156 (204)
T 3njr_A          117 -LADLPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAVT  156 (204)
T ss_dssp             -GTTSCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEECS
T ss_pred             -cccCCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEecC
Confidence             11223799999655432 2688899999999 999876543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.77  E-value=0.00011  Score=57.77  Aligned_cols=105  Identities=16%  Similarity=0.215  Sum_probs=71.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ +++|...   ..|..+  .++....+.+... -.++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G~i  104 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN--LAELDRLYEKVKAEAGRI  104 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHSCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            5888999986 8999999999999999 999999998887764 4566432   224433  2333333332221 1279


Q ss_pred             cEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          143 DYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       143 d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      |+++++.|...                         ..+.++..++++ |++|.+++..+
T Consensus       105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~~~  163 (273)
T 4fgs_A          105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGSTAG  163 (273)
T ss_dssp             EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCGGG
T ss_pred             CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeehhh
Confidence            99999988511                         234555567777 99998876544

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.75  E-value=0.00032  Score=54.31  Aligned_cols=78  Identities=14%  Similarity=0.011  Sum_probs=53.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-E--eCCCCCCCchHHHHHHHhhC-CCCccEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-F--INPDDEPNKSISELVKGITH-GMGVDYC  145 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~d~v  145 (254)
                      ++|||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+.+... .  .|..+  .++....+.+... -.++|++
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~g~iDiL   79 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVAD--PLTLKKFVEYAMEKLQRIDVL   79 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            67999986 8999999999999999 9999999988877766544332 1  23333  2233333322211 1289999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        80 VNNAG~   85 (247)
T 3ged_A           80 VNNACR   85 (247)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.74  E-value=0.00022  Score=54.68  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=66.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC-ceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+...+. .. +..+-   .   +.+.+...  ++|++|
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~-~~~Dl---~---~~~~~~~~--~~D~vi   89 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDI-VVANL---E---EDFSHAFA--SIDAVV   89 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEE-EECCT---T---SCCGGGGT--TCSEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceE-EEccc---H---HHHHHHHc--CCCEEE
Confidence            4778999997 9999999999999999 99999999998887776666 43 32211   1   22233222  799999


Q ss_pred             EcCCChh-------------HHHHHHHHcccC-CcEEEEEccCCC
Q 025336          147 ECTGVPS-------------LLSEALETTKVG-KGKVIVIGVGVD  177 (254)
Q Consensus       147 d~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~~~  177 (254)
                      ++.|...             ....+++.+... .++++.+++...
T Consensus        90 ~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           90 FAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             ECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            9998531             122333443322 168888887654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.71  E-value=0.0001  Score=54.75  Aligned_cols=102  Identities=19%  Similarity=0.204  Sum_probs=66.2

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCC---------CeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHH
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGA---------AKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVK  134 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~---------~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~  134 (254)
                      .-++++++||.+|+|+ |..+..+++..|.         .+|++++.++...     ......+ ..+- ...+....+.
T Consensus        18 ~~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~-~~~~~~~~~~   90 (196)
T 2nyu_A           18 QILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADV-TDPRTSQRIL   90 (196)
T ss_dssp             CCCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCT-TSHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccC-CCHHHHHHHH
Confidence            3467899999999987 8999999998873         4899999987431     1111222 1111 1133344444


Q ss_pred             HhhCCCCccEEEE-----cCCCh------------hHHHHHHHHcccCCcEEEEEcc
Q 025336          135 GITHGMGVDYCFE-----CTGVP------------SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       135 ~~~~~~~~d~v~d-----~~g~~------------~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +...+..||+|+.     +.+..            ..+..+.+.|+++ |+++....
T Consensus        91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  146 (196)
T 2nyu_A           91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKTW  146 (196)
T ss_dssp             HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence            4444448999994     33321            3567788899999 99987643

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.65  E-value=0.00011  Score=56.75  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhC-
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ....++.+||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++.    |...-+....   .+..+.+.+... 
T Consensus        56 ~~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~~~~~~~~  131 (239)
T 2hnk_A           56 TKISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL---GSALETLQVLIDS  131 (239)
T ss_dssp             HHHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHC
T ss_pred             HHhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE---CCHHHHHHHHHhh
Confidence            345578899999987 4888889999874 23999999999888877653    4322111111   334333333321 


Q ss_pred             ------------C-CCccEEEEcCCCh---hHHHHHHHHcccCCcEEEEEc
Q 025336          139 ------------G-MGVDYCFECTGVP---SLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       139 ------------~-~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g  173 (254)
                                  + ..||+|+.....+   ..+..+.+.++++ |+++...
T Consensus       132 ~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  181 (239)
T 2hnk_A          132 KSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIADN  181 (239)
T ss_dssp             SSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence                        1 4899999766543   3568888999999 9988743

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.60  E-value=5.2e-05  Score=58.33  Aligned_cols=102  Identities=22%  Similarity=0.262  Sum_probs=70.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ....++++++||.+|+| .|..+..+++..+. +|++++.+++..+.+++    .|...+ ....   .+..   ..+..
T Consensus        85 ~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~---~d~~---~~~~~  155 (235)
T 1jg1_A           85 EIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNV-HVIL---GDGS---KGFPP  155 (235)
T ss_dssp             HHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE---SCGG---GCCGG
T ss_pred             HhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEE---CCcc---cCCCC
Confidence            45578889999999988 58889999998874 89999999988887765    343221 1111   1111   11222


Q ss_pred             CCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +.+||+|+.+..-......+.+.++++ |+++..-.
T Consensus       156 ~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~~~  190 (235)
T 1jg1_A          156 KAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPVG  190 (235)
T ss_dssp             GCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred             CCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            236999997766544557888999999 98876543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.60  E-value=0.00073  Score=50.56  Aligned_cols=103  Identities=12%  Similarity=0.159  Sum_probs=71.8

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc--eEeCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT--DFINPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~  135 (254)
                      ....+++++++||-+|+|. |..+..+++.....+|++++.+++..+.+++    .|.+  .++..+      ..+.   
T Consensus        33 l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~~---  102 (204)
T 3e05_A           33 LSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF------APEG---  102 (204)
T ss_dssp             HHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC------TTTT---
T ss_pred             HHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC------hhhh---
Confidence            3567788999999999875 8888899988644499999999998888765    2432  122211      1111   


Q ss_pred             hhCCCCccEEEEcCC---ChhHHHHHHHHcccCCcEEEEEccC
Q 025336          136 ITHGMGVDYCFECTG---VPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ......||+|+....   ....+..+.+.++++ |+++.....
T Consensus       103 ~~~~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  144 (204)
T 3e05_A          103 LDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAVT  144 (204)
T ss_dssp             CTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEECB
T ss_pred             hhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEecc
Confidence            111137999997654   234678889999999 999886543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.60  E-value=0.00095  Score=51.59  Aligned_cols=79  Identities=18%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce---EeCCCCCCCchHHHHHHHhhCCCC
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD---FINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~---v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      -.++++|||+|+ |++|...++.+...|+ +|+++++++++.+.+. .+....   ..|..+   .+....+.+..  .+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~--~~   84 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLAN---KEECSNLISKT--SN   84 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS---HHHHHHHHHTC--SC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCC---HHHHHHHHHhc--CC
Confidence            346889999986 9999999999999999 9999999988776653 333222   123333   33333322221  37


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        85 id~li~~Ag~   94 (249)
T 3f9i_A           85 LDILVCNAGI   94 (249)
T ss_dssp             CSEEEECCC-
T ss_pred             CCEEEECCCC
Confidence            9999999884

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.60  E-value=6.9e-05  Score=57.54  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=68.6

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCc---eEeCCCCCCCchHHHHHHHh
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMT---DFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~i~~~  136 (254)
                      .....++.+||-+|+| .|..+..+++.....+|++++.+++..+.+++.    |..   .++.      .+..+.+...
T Consensus        49 ~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~------~d~~~~~~~~  121 (233)
T 2gpy_A           49 LLKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLF------GDALQLGEKL  121 (233)
T ss_dssp             HHHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC------SCGGGSHHHH
T ss_pred             HHhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------CCHHHHHHhc
Confidence            3345678899999987 588888999987433999999999988887653    432   2222      2222222222


Q ss_pred             hCCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEc
Q 025336          137 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .....||+|+.....   ...+..+.+.++++ |+++...
T Consensus       122 ~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  160 (233)
T 2gpy_A          122 ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSDN  160 (233)
T ss_dssp             TTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEET
T ss_pred             ccCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence            212379999965543   34677888899999 9988753

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.59  E-value=9.1e-05  Score=57.55  Aligned_cols=104  Identities=13%  Similarity=0.175  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhCCC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      ...++.+||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++.    |...-+....   .+..+.+....+..
T Consensus        60 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~l~~~~~~~  135 (248)
T 3tfw_A           60 RLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE---GPALQSLESLGECP  135 (248)
T ss_dssp             HHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHTCCSCC
T ss_pred             hhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHhcCCCC
Confidence            455788999999875 888888888774 34999999999988887653    4321111111   44444454443334


Q ss_pred             CccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEcc
Q 025336          141 GVDYCFECTGV---PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       141 ~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .||+|+-....   ...++.+.+.|+++ |.++.-..
T Consensus       136 ~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~~  171 (248)
T 3tfw_A          136 AFDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDNV  171 (248)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEECC
T ss_pred             CeEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeCC
Confidence            89999943322   23578888999999 98876543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.57  E-value=0.0016  Score=50.59  Aligned_cols=80  Identities=20%  Similarity=0.306  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCceE---eCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTDF---INPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~v---~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+    ++.|....   .|-.+  .++....+.+.. ..
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTD--ELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC--HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHC
Confidence            5888999986 8999999999999999 999999998766543    33454332   23333  233333333332 22


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        85 G~iDiLVNNAG~   96 (255)
T 4g81_D           85 IHVDILINNAGI   96 (255)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            379999999985

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.55  E-value=0.00035  Score=54.43  Aligned_cols=105  Identities=19%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +++++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +++...   ..|..+  .++....+.+... ..++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   83 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD--LNEIAVLGAAAGQTLGAI   83 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHSSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            5789999986 9999999999999999 9999999988776654 344322   124333  1222222222211 1279


Q ss_pred             cEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          143 DYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       143 d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      |+++++.|...                         ..+.++..++++ |+++.+++...
T Consensus        84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~~  142 (255)
T 4eso_A           84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-GSIVFTSSVAD  142 (255)
T ss_dssp             EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCGGG
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CEEEEECChhh
Confidence            99999987420                         122334445667 89998887543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.54  E-value=0.0003  Score=54.69  Aligned_cols=104  Identities=15%  Similarity=0.057  Sum_probs=72.7

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhc-----CCceEeCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAF-----GMTDFINPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~-----g~~~v~~~~~~~~~~~~~~i~~  135 (254)
                      .....++++++||.+|+|. |..+..+++..| ..+|++++.+++..+.+++.     |.+.+- ...   .+..+.  .
T Consensus        89 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~-~~~---~d~~~~--~  161 (258)
T 2pwy_A           89 VTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVR-FHL---GKLEEA--E  161 (258)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEE-EEE---SCGGGC--C
T ss_pred             HHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEE-EEE---Cchhhc--C
Confidence            3566788999999999885 888899999864 23999999999988888653     532221 111   111110  0


Q ss_pred             hhCCCCccEEEEcCCCh-hHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      + ....||+|+.....+ ..+..+.+.++++ |+++.+..
T Consensus       162 ~-~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  199 (258)
T 2pwy_A          162 L-EEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYLP  199 (258)
T ss_dssp             C-CTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             C-CCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence            1 223799999766554 5788999999999 99988764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.52  E-value=0.00041  Score=50.55  Aligned_cols=103  Identities=16%  Similarity=0.227  Sum_probs=71.1

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eEeCCCCCCCchHHHHHHHhh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ....++++++||.+|+|. |..+..+++..+..+|++++.+++..+.+++    .+.. .++...+     ..+   .+.
T Consensus        19 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d-----~~~---~~~   89 (178)
T 3hm2_A           19 SALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG-----APR---AFD   89 (178)
T ss_dssp             HHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC-----TTG---GGG
T ss_pred             HHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc-----hHh---hhh
Confidence            555778899999999885 8888999988743399999999988888764    3433 2211111     111   112


Q ss_pred             CC-CCccEEEEcCCC--hhHHHHHHHHcccCCcEEEEEccC
Q 025336          138 HG-MGVDYCFECTGV--PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       138 ~~-~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      .. ..||+|+.....  ...++.+.+.++++ |+++.....
T Consensus        90 ~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  129 (178)
T 3hm2_A           90 DVPDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAVT  129 (178)
T ss_dssp             GCCSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEECS
T ss_pred             ccCCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEeec
Confidence            21 389999965532  33789999999999 999876543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.51  E-value=0.0014  Score=53.93  Aligned_cols=93  Identities=12%  Similarity=0.045  Sum_probs=64.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      -+|+|+|+|.+|..+++.+.. .. .|.+++++.++.+.+++......+|..+   .+   .+.+...  +.|+|++|++
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d---~~---~l~~~~~--~~DvVi~~~p   86 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN---FD---KLVEVMK--EFELVIGALP   86 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC---HH---HHHHHHT--TCSEEEECCC
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC---HH---HHHHHHh--CCCEEEEecC
Confidence            369999999999998887754 35 7888899998888887655433455444   32   2333322  7899999998


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEcc
Q 025336          151 VPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .......+..++..+ -.++....
T Consensus        87 ~~~~~~v~~~~~~~g-~~yvD~s~  109 (365)
T 3abi_A           87 GFLGFKSIKAAIKSK-VDMVDVSF  109 (365)
T ss_dssp             GGGHHHHHHHHHHHT-CEEEECCC
T ss_pred             CcccchHHHHHHhcC-cceEeeec
Confidence            764455555667766 67777653

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.50  E-value=0.0013  Score=51.88  Aligned_cols=80  Identities=19%  Similarity=0.159  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      .+.++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.    ..+... .  .|..+  .++....+.+.....
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE--AGAGTDLIERAEAIA  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS--TTHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            4788999986 9999999999999999 9999999887665542    234322 1  23333  233333333222113


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus       109 ~iD~lvnnAg~  119 (275)
T 4imr_A          109 PVDILVINASA  119 (275)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999984

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.49  E-value=0.00093  Score=50.85  Aligned_cols=103  Identities=11%  Similarity=0.114  Sum_probs=68.4

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHh----cCCc-eEeCCCCCCCchHHHHHHH
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEA----FGMT-DFINPDDEPNKSISELVKG  135 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~  135 (254)
                      ...+.+++.+||-+|+|. |..++.+++.+  +. +|++++.+++..+.+++    .|.. .-+....   .+..+.+..
T Consensus        50 ~~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~---gda~~~l~~  124 (221)
T 3dr5_A           50 ATTNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRVRFLL---SRPLDVMSR  124 (221)
T ss_dssp             HHSCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC---SCHHHHGGG
T ss_pred             HhhCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE---cCHHHHHHH
Confidence            334445566999889874 88888999976  45 99999999998888765    3432 1111122   344444433


Q ss_pred             hhCCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEE
Q 025336          136 ITHGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      +.. ..||+||-....   ...++.+.+.++++ |.++.-
T Consensus       125 ~~~-~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d  162 (221)
T 3dr5_A          125 LAN-DSYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLA  162 (221)
T ss_dssp             SCT-TCEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEET
T ss_pred             hcC-CCcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEe
Confidence            323 389999854332   23578889999999 998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.49  E-value=0.00059  Score=52.97  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=32.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +.+|+|+|+|++|..+++.+...|.++++.++.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            57899999999999999999999998999998887

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.49  E-value=0.0017  Score=50.57  Aligned_cols=106  Identities=12%  Similarity=0.036  Sum_probs=66.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH---hcCCce---EeCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE---AFGMTD---FINPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|++.++++++.+.++   +.+...   ..|..+  .++..+.+.+... -.
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD--DAQCRDAVAQTIATFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            5788999986 8999999999999999 9999999887655443   334221   234443  2333333332211 12


Q ss_pred             CccEEEEcCCChh------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          141 GVDYCFECTGVPS------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       141 ~~d~v~d~~g~~~------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ++|+++++.|...                        ..+.++..++.++|++|.+++..+
T Consensus        83 ~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  143 (258)
T 4gkb_A           83 RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTA  143 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHH
T ss_pred             CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhh
Confidence            8999999998411                        123344455432399998887543

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.48  E-value=0.0011  Score=50.15  Aligned_cols=98  Identities=8%  Similarity=0.030  Sum_probs=62.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCcc-cHHHHHhcCCc-eEe--CCCCCCCchHHHHHHHhhCCCCccE
Q 025336           71 SSVAVLGL-GTVGLGAVDGAR-MQGAAKIIGIDKNPW-KKEKGEAFGMT-DFI--NPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~-~~g~~~v~~v~~~~~-~~~~~~~~g~~-~v~--~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+|||+|+ |.+|..+++.+. ..|+ +|++++++++ +.+.+...+.. .++  |..+   .+   .+.+...  ++|+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d---~~---~~~~~~~--~~d~   76 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQN---PG---XLEQAVT--NAEV   76 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTTC---HH---HHHHHHT--TCSE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCCC---HH---HHHHHHc--CCCE
Confidence            46999996 999999998887 8999 9999999987 66655322221 222  3333   32   2233222  7899


Q ss_pred             EEEcCCChhH-HHHHHHHcccC-CcEEEEEccCCC
Q 025336          145 CFECTGVPSL-LSEALETTKVG-KGKVIVIGVGVD  177 (254)
Q Consensus       145 v~d~~g~~~~-~~~~~~~l~~~-~G~~v~~g~~~~  177 (254)
                      +|++.|.... ...+++.+... .+++|.+++...
T Consensus        77 vv~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           77 VFVGAMESGSDMASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             EEESCCCCHHHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EEEcCCCCChhHHHHHHHHHhcCCCeEEEEeecee
Confidence            9999986311 34445555433 258888776543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.48  E-value=0.0005  Score=53.36  Aligned_cols=105  Identities=17%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKG  135 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~  135 (254)
                      +.....++++++||-.|+|. |..+..+++..+ ..+|++++.+++..+.+++.    |....+....   .+..    +
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~----~  156 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL---KDIY----E  156 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC---SCGG----G
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEE---Cchh----h
Confidence            34567788999999999876 888889999853 33999999999888887653    4321011111   2222    1


Q ss_pred             hhCCCCccEEEEcCCCh-hHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ......||+|+-....+ ..+..+.+.++++ |+++.+..
T Consensus       157 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  195 (255)
T 3mb5_A          157 GIEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYTP  195 (255)
T ss_dssp             CCCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             ccCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEEC
Confidence            12233799999766554 3789999999999 99988754

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.48  E-value=0.0012  Score=52.13  Aligned_cols=105  Identities=20%  Similarity=0.218  Sum_probs=65.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc-HHH----HHhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK-KEK----GEAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~-~~~----~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|++++++.++ .+.    +++.+... .  .|..+  .+++...+.+... 
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV--VEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 9999999999999999 89998887643 222    23445332 2  23333  1223333322211 


Q ss_pred             CCCccEEEEcCCCh----------h---------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          139 GMGVDYCFECTGVP----------S---------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       139 ~~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      -.++|+++++.|..          .               .++.+++.++.. |+++.+++..+
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~~  167 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSITG  167 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGGG
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEechhh
Confidence            12799999998741          0               123444555566 89999887543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.46  E-value=0.0015  Score=49.50  Aligned_cols=93  Identities=19%  Similarity=0.279  Sum_probs=63.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+.+...+...+ .|..+   .+.    ..+   .++|+||++.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d---~~~----~~~---~~~d~vi~~a   70 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLV---LTE----ADL---DSVDAVVDAL   70 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGG---CCH----HHH---TTCSEEEECC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccc---ccH----hhc---ccCCEEEECC
Confidence            5899997 9999999999998999 99999999887765544444332 23333   222    222   2789999999


Q ss_pred             CCh----------hHHHHHHHHcccCCcEEEEEccC
Q 025336          150 GVP----------SLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       150 g~~----------~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      |..          .....+++.+...+++++.+++.
T Consensus        71 g~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           71 SVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             CCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            862          12345566665442688888643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.45  E-value=0.0034  Score=43.54  Aligned_cols=76  Identities=18%  Similarity=0.187  Sum_probs=53.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +.+|+|+|+|.+|...++.+...|. +|+++++++++.+.+++ ++...+. +..+   .+   .+.+. .-.++|+++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~---~~---~l~~~-~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK---IK---TLEDA-GIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS---HH---HHHHT-TTTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEEcCCCC---HH---HHHHc-CcccCCEEEE
Confidence            3579999999999999999998998 89999999888776654 4654332 2222   22   22222 2237999999


Q ss_pred             cCCChh
Q 025336          148 CTGVPS  153 (254)
Q Consensus       148 ~~g~~~  153 (254)
                      +++...
T Consensus        76 ~~~~~~   81 (140)
T 1lss_A           76 VTGKEE   81 (140)
T ss_dssp             CCSCHH
T ss_pred             eeCCch
Confidence            998753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.45  E-value=0.00012  Score=59.07  Aligned_cols=103  Identities=12%  Similarity=0.133  Sum_probs=71.1

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHh
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      +....+++++.+||-+|+|. |..+..+++..|+ +|++++.+++..+.+++.    |...-+....   .+.    .++
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~----~~~  152 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QGW----EDF  152 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCG----GGC
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CCh----HHC
Confidence            34566788999999999876 8888899988898 999999999988887653    3211011111   111    112


Q ss_pred             hCCCCccEEEEc-----CCC---hhHHHHHHHHcccCCcEEEEEccC
Q 025336          137 THGMGVDYCFEC-----TGV---PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       137 ~~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                       . ..||+|+..     .+.   ...+..+.+.++|+ |+++.....
T Consensus       153 -~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  196 (318)
T 2fk8_A          153 -A-EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSSV  196 (318)
T ss_dssp             -C-CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEEE
T ss_pred             -C-CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEec
Confidence             2 389999975     332   33577888999999 998876543

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.45  E-value=0.0012  Score=51.64  Aligned_cols=80  Identities=24%  Similarity=0.232  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce-E--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD-F--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++... +  .|..+  .+++...+.+... ..++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSD--RKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS--HHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCC--HHHHHHHHHHHHHHcCCC
Confidence            5788999986 9999999999999999 999999988776654 4455432 2  23333  1223222222211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus       103 D~lvnnAg~  111 (266)
T 3grp_A          103 DILVNNAGI  111 (266)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.45  E-value=0.0017  Score=48.98  Aligned_cols=92  Identities=14%  Similarity=0.277  Sum_probs=62.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+...+ .|..+   .+.    ..+   .++|++|++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d---~~~----~~~---~~~d~vi~~a   69 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFD---LTL----SDL---SDQNVVVDAY   69 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGG---CCH----HHH---TTCSEEEECC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccC---hhh----hhh---cCCCEEEECC
Confidence            5899997 9999999999999999 9999999987776554 233322 23333   222    222   2799999999


Q ss_pred             CCh--------hHHHHHHHHcccC-CcEEEEEccC
Q 025336          150 GVP--------SLLSEALETTKVG-KGKVIVIGVG  175 (254)
Q Consensus       150 g~~--------~~~~~~~~~l~~~-~G~~v~~g~~  175 (254)
                      |..        .....+++.+... .++++.+++.
T Consensus        70 g~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           70 GISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             cCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            863        1234556666543 2688887764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.44  E-value=0.0014  Score=50.41  Aligned_cols=77  Identities=19%  Similarity=0.232  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceEe--CCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDFI--NPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v~--~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+. ++....++  |..+   .+..+.+.+  ...++|+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~--~~~~id~   79 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALG--SVGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHT--TCCCCCE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCC---HHHHHHHHH--HcCCCCE
Confidence            4678999987 9999999999999999 8999999887766543 33222222  3333   332222222  2237999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      +|++.|.
T Consensus        80 vi~~Ag~   86 (244)
T 3d3w_A           80 LVNNAAV   86 (244)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999873

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.43  E-value=0.0024  Score=49.68  Aligned_cols=80  Identities=11%  Similarity=0.242  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC-c-eE--eCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-G--TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM-T-DF--INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g--~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~-~-~v--~~~~~~~~~~~~~~i~~~~  137 (254)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+.++++++..+.+.    +.+. . ..  .|-.+  .++....+.+..
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS--DEEVINGFEQIG   81 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC--HHHHHHHHHHHH
Confidence            5889999986 5  799999999999999 9999999987766553    3332 1 12  24443  233333332221


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . -.++|+++++.|.
T Consensus        82 ~~~G~iD~lvnnAg~   96 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAF   96 (256)
T ss_dssp             HHHCCCSEEEECCCC
T ss_pred             HHhCCCCEEEecccc
Confidence            1 1289999998873

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.41  E-value=0.0029  Score=49.38  Aligned_cols=80  Identities=18%  Similarity=0.213  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCc-eE--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +++.. ..  .|..+  .+++...+.+... ..++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   81 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD--PKAVEAVFAEALEEFGRL   81 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999986 9999999999999999 9999999987766543 34322 11  24433  1223333332211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        82 D~lvnnAg~   90 (263)
T 2a4k_A           82 HGVAHFAGV   90 (263)
T ss_dssp             CEEEEGGGG
T ss_pred             cEEEECCCC
Confidence            999998873

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.40  E-value=0.0026  Score=49.68  Aligned_cols=105  Identities=12%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             CCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC--ceE--eCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GT--VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM--TDF--INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~--~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~--~~v--~~~~~~~~~~~~~~i~~~~  137 (254)
                      .+.++||+|+ |.  +|...++.+...|+ +|++++++++..+.+++    .+.  ..+  .|..+  .+++.+.+.++.
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~   82 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN--DAEIETCFASIK   82 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS--SHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC--HHHHHHHHHHHH
Confidence            4678999986 65  99999988888999 89999888655444432    332  112  24443  233433333332


Q ss_pred             C-CCCccEEEEcCCChh-----------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          138 H-GMGVDYCFECTGVPS-----------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      . ..++|+++++.|...                             ..+.++..+.++ |+++.+++...
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~~~  151 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEG-GSIVTLTYLGG  151 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC-EEEEEEECGGG
T ss_pred             HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCC-ceEEEEecccc
Confidence            1 127999999887321                             122334455667 99998887543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.40  E-value=4e-05  Score=58.03  Aligned_cols=103  Identities=20%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC--CCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQG--AAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g--~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~  135 (254)
                      .....+.++++||.+|+| .|..+..+++..|  . +|++++.+++..+.+++.    +...+ ....   .+...   .
T Consensus        70 ~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~---~d~~~---~  140 (215)
T 2yxe_A           70 CELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDG-LVVSIERIPELAEKAERTLRKLGYDNV-IVIV---GDGTL---G  140 (215)
T ss_dssp             HHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHTCTTE-EEEE---SCGGG---C
T ss_pred             HHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEE---CCccc---C
Confidence            355678899999999988 4888899999886  5 899999999888887653    32221 1111   11111   1


Q ss_pred             hhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ......||+|+.+..-....+.+.+.++++ |+++..-.
T Consensus       141 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~~  178 (215)
T 2yxe_A          141 YEPLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPVG  178 (215)
T ss_dssp             CGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             CCCCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEEC
Confidence            111237999998766544557888999999 98876643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.40  E-value=0.0029  Score=50.12  Aligned_cols=87  Identities=20%  Similarity=0.272  Sum_probs=60.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+++.|... .       .+..+.+.      ..|+||-|+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~~~~~------~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAER-A-------ATPCEVVE------SCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEE-C-------SSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c-------CCHHHHHh------cCCEEEEEcC
Confidence            478999999999999999999999 9999999999998888776532 1       22222222      4688888887


Q ss_pred             ChhHHHHHH-------HHcccCCcEEEEEc
Q 025336          151 VPSLLSEAL-------ETTKVGKGKVIVIG  173 (254)
Q Consensus       151 ~~~~~~~~~-------~~l~~~~G~~v~~g  173 (254)
                      .+..++..+       ..+.++ ..++..+
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~-~~vi~~s   95 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEG-RGYVDMS   95 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             CHHHHHHHHcCcchHhhcCCCC-CEEEeCC
Confidence            543444443       445555 5555554

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.39  E-value=0.00096  Score=52.00  Aligned_cols=80  Identities=20%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hc-----CCc-eE--eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AF-----GMT-DF--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~-----g~~-~v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +.. .+  .|..+  .+++...+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE--PGDIDRLFEKARD   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4678999986 9999999999888999 9999999877665432 21     211 22  24443  2333334443333


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        83 ~~gid~lv~~Ag~   95 (260)
T 2z1n_A           83 LGGADILVYSTGG   95 (260)
T ss_dssp             TTCCSEEEECCCC
T ss_pred             hcCCCEEEECCCC
Confidence            2249999999873

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.38  E-value=4e-05  Score=57.80  Aligned_cols=100  Identities=11%  Similarity=0.068  Sum_probs=68.8

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~  135 (254)
                      .....++++++||-+|+|. |..+..+++. +. +|++++.+++..+.+++    .+...  ++..      +..+.   
T Consensus        70 ~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~------d~~~~---  137 (210)
T 3lbf_A           70 TELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHG------DGWQG---  137 (210)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEES------CGGGC---
T ss_pred             HHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEEC------CcccC---
Confidence            3566788999999999874 8888888887 66 99999999998888765    34322  2211      11111   


Q ss_pred             hhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ......||+|+.+..-....+.+.+.++++ |+++..-.
T Consensus       138 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~~~  175 (210)
T 3lbf_A          138 WQARAPFDAIIVTAAPPEIPTALMTQLDEG-GILVLPVG  175 (210)
T ss_dssp             CGGGCCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEEEC
T ss_pred             CccCCCccEEEEccchhhhhHHHHHhcccC-cEEEEEEc
Confidence            111238999998655443456788999999 98876543

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.38  E-value=0.00094  Score=52.77  Aligned_cols=96  Identities=13%  Similarity=0.034  Sum_probs=63.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +|||+|+ |.+|..+++.+... |. +|+++++++++...+...+...+ .|..+   .+   .+.+...  ++|.||.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d---~~---~l~~~~~--~~d~vi~~   72 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN---QE---SMVEAFK--GMDTVVFI   72 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC---HH---HHHHHTT--TCSEEEEC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC---HH---HHHHHHh--CCCEEEEe
Confidence            5899997 99999999888877 88 89999999877655544454332 34443   32   2333322  79999999


Q ss_pred             CCCh-------hHHHHHHHHcccC-CcEEEEEccCC
Q 025336          149 TGVP-------SLLSEALETTKVG-KGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~-------~~~~~~~~~l~~~-~G~~v~~g~~~  176 (254)
                      .+..       .....+++.+... -++++.+++..
T Consensus        73 a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           73 PSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            8752       1234555555544 14788877654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.38  E-value=0.0007  Score=52.60  Aligned_cols=80  Identities=14%  Similarity=0.166  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhhCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      ++.++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.    +.+...   ..|..+  .+++...+.+.....
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN--EDEVTAFLNAADAHA   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC--HHHHHHHHHHHHhhC
Confidence            4678999986 8999999999999999 9999999988766543    234322   224433  123333333221113


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus        83 ~id~lv~nAg~   93 (252)
T 3h7a_A           83 PLEVTIFNVGA   93 (252)
T ss_dssp             CEEEEEECCCC
T ss_pred             CceEEEECCCc
Confidence            89999999984

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.38  E-value=0.00034  Score=53.60  Aligned_cols=101  Identities=18%  Similarity=0.205  Sum_probs=68.8

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcCC-----ceEeCCCCCCCchHHHHHHHh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFGM-----TDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g~-----~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      ....++||++||=+|+|+ |..+..+|+..|. .+|++++.+++..+.+++.-.     ..+..... ++...     ..
T Consensus        71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~-~p~~~-----~~  143 (233)
T 4df3_A           71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDAR-FPEKY-----RH  143 (233)
T ss_dssp             SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTT-CGGGG-----TT
T ss_pred             hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEecc-Ccccc-----cc
Confidence            567899999999999875 8899999998885 489999999998888765321     22222111 01110     01


Q ss_pred             hCCCCccEEEEcCCCh----hHHHHHHHHcccCCcEEEEE
Q 025336          137 THGMGVDYCFECTGVP----SLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  172 (254)
                       ....+|+||.....+    ..+..+.+.|+|+ |++++.
T Consensus       144 -~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~  181 (233)
T 4df3_A          144 -LVEGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA  181 (233)
T ss_dssp             -TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -ccceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence             123789888555433    2466778899999 998875

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.37  E-value=0.0011  Score=53.18  Aligned_cols=92  Identities=13%  Similarity=0.175  Sum_probs=62.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHH--HcCCCeEEEEcCCccc--HHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           71 SSVAVLGLGTVGLGAVDGAR--MQGAAKIIGIDKNPWK--KEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~--~~g~~~v~~v~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      -+|.|+|+|.+|...++.+.  ..+..-+.++++++++  .+.++++|.....       .+.. .+.+.+++.++|+||
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~-------~~~e-~ll~~~~~~~iDvV~   76 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------AGVE-GLIKLPEFADIDFVF   76 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------SHHH-HHHHSGGGGGEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc-------CCHH-HHHhccCCCCCcEEE
Confidence            47899999999998888774  3456334455666666  5667778864221       2222 232322234899999


Q ss_pred             EcCCChhHHHHHHHHccc--CCcEEEE
Q 025336          147 ECTGVPSLLSEALETTKV--GKGKVIV  171 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~--~~G~~v~  171 (254)
                      +|++.....+.+..++..  + ..+++
T Consensus        77 ~atp~~~h~~~a~~al~a~~G-k~Vi~  102 (312)
T 1nvm_B           77 DATSASAHVQNEALLRQAKPG-IRLID  102 (312)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEE
T ss_pred             ECCChHHHHHHHHHHHHhCCC-CEEEE
Confidence            999977677788888887  7 77666

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.37  E-value=0.00044  Score=52.74  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=68.9

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ....++.+||-+|+| .|..++.+++..+ ..+|++++.+++..+.+++.    |...-+....   .+..+.+.++...
T Consensus        65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~~~~~~~~  140 (229)
T 2avd_A           65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDELLAA  140 (229)
T ss_dssp             HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHHT
T ss_pred             HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE---cCHHHHHHHHHhc
Confidence            345677899999987 5888888988763 33999999999888887652    4311111111   3344444443321


Q ss_pred             ---CCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEc
Q 025336          140 ---MGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       140 ---~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                         ..||+|+-....   ...+..+.+.++++ |.++...
T Consensus       141 ~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~  179 (229)
T 2avd_A          141 GEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLR  179 (229)
T ss_dssp             TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEC
Confidence               389999854332   23578889999999 9988754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.36  E-value=0.0022  Score=51.09  Aligned_cols=80  Identities=15%  Similarity=0.260  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-G--TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g--~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ |  ++|...++.+...|+ +|++++++++..+.++    +.+....  .|..+  .+++...+.+... 
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD--AESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4789999986 5  999999999889999 8999999876554443    2343222  24443  2233333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus       106 ~g~iD~lVnnAG~  118 (296)
T 3k31_A          106 WGSLDFVVHAVAF  118 (296)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1279999999874

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.36  E-value=0.0027  Score=49.25  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce-Ee--CCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD-FI--NPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++... .+  |..+  .+++...+.+... ..++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   81 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS--EADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTC--HHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999986 9999999999888999 899999988766654 3344322 22  3333  2233333332211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        82 d~lv~~Ag~   90 (253)
T 1hxh_A           82 NVLVNNAGI   90 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.36  E-value=0.002  Score=51.20  Aligned_cols=104  Identities=17%  Similarity=0.141  Sum_probs=64.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH-HHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK-EKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~-~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++. +.+    ++.+... .  .|..+  .+++...+.+... 
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD--EQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 9999999999999999 899988876532 222    3344332 2  24433  1222322322211 


Q ss_pred             CCCccEEEEcCCCh-----------h---------------HHHHHHHHcccCCcEEEEEccCC
Q 025336          139 GMGVDYCFECTGVP-----------S---------------LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       139 ~~~~d~v~d~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ..++|+++++.|..           +               ..+.++..+.++ |+++.+++..
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~iv~isS~~  185 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG-DVIINTASIV  185 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTT-CEEEEECCTH
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CEEEEEechH
Confidence            12799999987631           0               123344455667 8999887653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.35  E-value=0.0021  Score=51.13  Aligned_cols=105  Identities=18%  Similarity=0.236  Sum_probs=65.8

Q ss_pred             CCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GT--VGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~--~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +++++||+|+ |.  +|.+.++.+...|+ +|++++++++..+.++    +.+....  .|..+  .+++...+.+... 
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  106 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD--AASIDAVFETLEKK  106 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHHh
Confidence            5789999986 55  99999999999999 8999988864433332    2343222  24443  2233333333221 


Q ss_pred             CCCccEEEEcCCChh-----------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          139 GMGVDYCFECTGVPS-----------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ..++|+++++.|...                             ..+.++..+.++ |+++.+++...
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~~~  173 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYYGA  173 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECGGG
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeehhh
Confidence            127999999987421                             223444556677 99998886543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.35  E-value=0.0019  Score=50.15  Aligned_cols=96  Identities=24%  Similarity=0.360  Sum_probs=65.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      ++++++||-+|+|. |..++.+++ .|. +|++++.++...+.+++    .+..  +....   .+..+.   +..+ .|
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~---~d~~~~---~~~~-~f  185 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLE---GSLEAA---LPFG-PF  185 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEE---SCHHHH---GGGC-CE
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEE---CChhhc---CcCC-CC
Confidence            57889999999875 777777666 588 99999999998888765    3432  11111   233332   2233 79


Q ss_pred             cEEEEcCCC---hhHHHHHHHHcccCCcEEEEEccC
Q 025336          143 DYCFECTGV---PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       143 d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      |+|+.+.-.   ...+..+.+.++++ |+++..+..
T Consensus       186 D~Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~~  220 (254)
T 2nxc_A          186 DLLVANLYAELHAALAPRYREALVPG-GRALLTGIL  220 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred             CEEEECCcHHHHHHHHHHHHHHcCCC-CEEEEEeec
Confidence            999965432   23567788899999 999887654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.34  E-value=0.00068  Score=53.40  Aligned_cols=104  Identities=18%  Similarity=0.230  Sum_probs=72.7

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhc-----C--Cce--EeCCCCCCCchHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAF-----G--MTD--FINPDDEPNKSIS  130 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~-----g--~~~--v~~~~~~~~~~~~  130 (254)
                      +.....++++++||.+|+| .|..+..+++..+ ..+|++++.+++..+.+++.     |  .+.  ++..      +..
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~------d~~  163 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS------DLA  163 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS------CGG
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC------chH
Confidence            3356678899999999988 5888889998764 23999999999888887653     4  222  2221      111


Q ss_pred             HHHHHhhCCCCccEEEEcCCCh-hHHHHHHHHcccCCcEEEEEccC
Q 025336          131 ELVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       131 ~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +.  .+ ....||+|+.....+ ..+..+.+.++++ |+++.+...
T Consensus       164 ~~--~~-~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  205 (280)
T 1i9g_A          164 DS--EL-PDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVAT  205 (280)
T ss_dssp             GC--CC-CTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEESS
T ss_pred             hc--CC-CCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeCC
Confidence            11  01 223799999766544 5788999999999 998887643

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.34  E-value=0.0011  Score=52.15  Aligned_cols=80  Identities=21%  Similarity=0.328  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC-c--eE--eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM-T--DF--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~-~--~v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+. .  .+  .|..+  .+++...+.++..
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  107 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS  107 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4678999986 9999999999999999 8999999877665432    2332 1  11  24433  1233333322211


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|++|++.|.
T Consensus       108 ~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          108 QHSGVDICINNAGL  121 (279)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hCCCCCEEEECCCC
Confidence             1279999999873

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.34  E-value=0.00021  Score=57.08  Aligned_cols=100  Identities=13%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCc-e--EeCCCCCCCchHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMT-D--FINPDDEPNKSISELV  133 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~-~--v~~~~~~~~~~~~~~i  133 (254)
                      +.....++++.+||-+|+|. |..+..+++..|+ +|++++.+++..+.+++.    |.. .  ++.      .+.    
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~------~d~----  131 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI------QGW----  131 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE------CCG----
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE------CCH----
Confidence            44667788999999999875 8888999998887 999999999988887653    322 1  221      112    


Q ss_pred             HHhhCCCCccEEEEcCC-----C----------hhHHHHHHHHcccCCcEEEEEccC
Q 025336          134 KGITHGMGVDYCFECTG-----V----------PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g-----~----------~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      .++ . ..||+|+....     .          ...+..+.+.|+|+ |++++....
T Consensus       132 ~~~-~-~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~  185 (302)
T 3hem_A          132 EEF-D-EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT  185 (302)
T ss_dssp             GGC-C-CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred             HHc-C-CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence            112 2 38999986432     1          24678888999999 999876654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=0.00072  Score=51.38  Aligned_cols=95  Identities=14%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe--CCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI--NPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. -+. .++  |..+   .+   .+.+...  ++|+||.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~-~~~~~Dl~d---~~---~~~~~~~--~~d~vi~   73 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHL-KVKKADVSS---LD---EVCEVCK--GADAVIS   73 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTE-EEECCCTTC---HH---HHHHHHT--TCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-Cce-EEEEecCCC---HH---HHHHHhc--CCCEEEE
Confidence            57999987 9999999999999998 9999999877654321 111 222  3322   22   2233222  6999999


Q ss_pred             cCCCh-----------hHHHHHHHHcccC-CcEEEEEccCC
Q 025336          148 CTGVP-----------SLLSEALETTKVG-KGKVIVIGVGV  176 (254)
Q Consensus       148 ~~g~~-----------~~~~~~~~~l~~~-~G~~v~~g~~~  176 (254)
                      +.+..           .....+++.+... -.+++.+++..
T Consensus        74 ~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           74 AFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             CCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             eCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            98753           1233455555543 13788887654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.32  E-value=0.00083  Score=51.54  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=62.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .+|||+|+ |.+|..+++.+...| + +|+++++++++.+.+...+...+ .|..+   .+.   +.+...  ++|++|.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d---~~~---~~~~~~--~~D~vv~   94 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQIIMGDVLN---HAA---LKQAMQ--GQDIVYA   94 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEEEEECCTTC---HHH---HHHHHT--TCSEEEE
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcEEEEecCCC---HHH---HHHHhc--CCCEEEE
Confidence            57999986 999999999999999 7 89999898776543322222221 23333   332   222222  7899999


Q ss_pred             cCCChhH---HHHHHHHcccC-CcEEEEEccCC
Q 025336          148 CTGVPSL---LSEALETTKVG-KGKVIVIGVGV  176 (254)
Q Consensus       148 ~~g~~~~---~~~~~~~l~~~-~G~~v~~g~~~  176 (254)
                      +.+....   .+.+++.+... .+++|.+++..
T Consensus        95 ~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           95 NLTGEDLDIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             ECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             cCCCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence            9887432   23455555433 25888887644

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.32  E-value=0.00025  Score=55.55  Aligned_cols=95  Identities=19%  Similarity=0.184  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      .++.+||.+|+|. |..+..+++.. |. +|++++.+++..+.+++.+... ++..+.   .++     .... ..||+|
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~-----~~~~-~~fD~v  152 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PFSD-TSMDAI  152 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SBCT-TCEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhC-----CCCC-CceeEE
Confidence            5788999999987 88899999986 66 9999999999999988765432 222111   111     0112 379999


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +.... +..+..+.+.++++ |+++.....
T Consensus       153 ~~~~~-~~~l~~~~~~L~pg-G~l~~~~~~  180 (269)
T 1p91_A          153 IRIYA-PCKAEELARVVKPG-GWVITATPG  180 (269)
T ss_dssp             EEESC-CCCHHHHHHHEEEE-EEEEEEEEC
T ss_pred             EEeCC-hhhHHHHHHhcCCC-cEEEEEEcC
Confidence            96444 44789999999999 998877543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.32  E-value=0.0017  Score=49.89  Aligned_cols=79  Identities=13%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCce---EeCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTD---FINPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      +.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ ++...   ..|..+  .++....+.+... ..++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~id   79 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH--HEDVDVAFAAAVEWGGLPE   79 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS--HHHHHHHHHHHHHHHCSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHHhcCCCc
Confidence            568999986 9999999999889999 99999999887765532 32211   224333  1233333322211 12799


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++++.|.
T Consensus        80 ~lvnnAg~   87 (235)
T 3l6e_A           80 LVLHCAGT   87 (235)
T ss_dssp             EEEEECCC
T ss_pred             EEEECCCC
Confidence            99999884

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.32  E-value=0.0018  Score=50.69  Aligned_cols=80  Identities=20%  Similarity=0.251  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    ..+...   ..|..+  .++....+.+... .
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD--RHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            3678999986 8999999999999999 8999999987766543    234322   124443  1223333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        80 g~iD~lVnnAG~   91 (264)
T 3tfo_A           80 GRIDVLVNNAGV   91 (264)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.0033  Score=49.36  Aligned_cols=103  Identities=19%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-ccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-WKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ |++|.+.++.+...|+ +|++++++. ++.+.+    ++.|... .  .|..+  .+++.+.+.+... 
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD--AEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999999999999 888875543 433332    3345432 1  23333  2333333332211 


Q ss_pred             CCCccEEEEcCCCh----------h---------------HHHHHHHHcccCCcEEEEEccC
Q 025336          139 GMGVDYCFECTGVP----------S---------------LLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       139 ~~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ..++|+++++.|..          +               ..+.+++.+.+. |+++.+++.
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~  167 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSN  167 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCG
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeCh
Confidence            12799999998741          0               233445566677 999988764

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.31  E-value=0.0016  Score=50.31  Aligned_cols=80  Identities=20%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCceE---eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDF---INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~v---~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++....   .|..+  .++....+.+... ..++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   81 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISD--PGSVKALFAEIQALTGGI   81 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHCCCC
Confidence            4788999986 9999999999999999 999999998776654 34554322   23332  1223333322211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        82 d~lv~nAg~   90 (247)
T 3rwb_A           82 DILVNNASI   90 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.30  E-value=0.0018  Score=51.16  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcC-----Cc-eEeCCCCCCCchHHHHHHHhhCCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFG-----MT-DFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g-----~~-~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      -.+.++||+|+|++|.+++..+...|+++|+++.++.++.+.+ ++++     .. ..++.     +++.+.+.      
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~-----~~l~~~l~------  193 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA-----RGIEDVIA------  193 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS-----TTHHHHHH------
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH-----HHHHHHHh------
Confidence            3578999999999999999999999997799999998877654 3332     11 12222     23433332      


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      .+|+|++|+..
T Consensus       194 ~~DiVInaTp~  204 (283)
T 3jyo_A          194 AADGVVNATPM  204 (283)
T ss_dssp             HSSEEEECSST
T ss_pred             cCCEEEECCCC
Confidence            68999999863

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.29  E-value=0.0038  Score=48.41  Aligned_cols=79  Identities=23%  Similarity=0.210  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHH---HHhcCCce-Ee--CCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEK---GEAFGMTD-FI--NPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~---~~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      .+.++||+|+ |++|...++.+...|+ +|++++++++ .+.   +++.+... .+  |..+  .+++...+.+... ..
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP-APALAEIARHGVKAVHHPADLSD--VAQIEALFALAEREFG   78 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTS--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCC--HHHHHHHHHHHHHHcC
Confidence            3678999986 9999999999999999 8999988765 222   23334322 22  3333  1223333322211 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus        79 ~id~lv~~Ag~   89 (255)
T 2q2v_A           79 GVDILVNNAGI   89 (255)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.29  E-value=0.0025  Score=49.41  Aligned_cols=76  Identities=18%  Similarity=0.097  Sum_probs=50.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh---cCCce-EeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA---FGMTD-FINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~---~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      .++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+   .+... .++..+  ...+.+.+.+.. + ++|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~--v~~~~~~~~~~~-g-~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE--PAELIEAVTSAY-G-QVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS--HHHHHHHHHHHH-S-CCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEECHHH--HHHHHHHHHHHh-C-CCCEE
Confidence            36899986 8999999999999999 99999998877665432   24332 222221  122333333322 2 79999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        77 v~nAg~   82 (254)
T 1zmt_A           77 VSNDIF   82 (254)
T ss_dssp             EEECCC
T ss_pred             EECCCc
Confidence            998874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.28  E-value=0.0014  Score=50.89  Aligned_cols=79  Identities=14%  Similarity=0.198  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCceE---eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTDF---INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~v---~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|....   .|-.+  .++....+.+... -
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK--KKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999999999999 999999998877654    34554322   24443  2333333332211 1


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      .++|+++++.|
T Consensus        83 G~iDiLVNNAG   93 (254)
T 4fn4_A           83 SRIDVLCNNAG   93 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            27999999987

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.28  E-value=0.0037  Score=50.11  Aligned_cols=74  Identities=20%  Similarity=0.225  Sum_probs=54.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|... .       .+..+.+.      ..|+||-|+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~-~-------~~~~~~~~------~aDvvi~~vp   86 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASV-C-------ESPAEVIK------KCKYTIAMLS   86 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEE-C-------SSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeE-c-------CCHHHHHH------hCCEEEEEcC
Confidence            579999999999999999999999 9999999999999888777532 1       22222221      4677777776


Q ss_pred             ChhHHHHHH
Q 025336          151 VPSLLSEAL  159 (254)
Q Consensus       151 ~~~~~~~~~  159 (254)
                      .+..++..+
T Consensus        87 ~~~~~~~v~   95 (310)
T 3doj_A           87 DPCAALSVV   95 (310)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            653444443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.28  E-value=0.0022  Score=52.15  Aligned_cols=49  Identities=31%  Similarity=0.362  Sum_probs=41.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD  117 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~  117 (254)
                      -+|++|.|.|.|.+|+.+++.++..|+ +|++.+.++++.++++++|+..
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~  221 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA  221 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEE
Confidence            478999999999999999999999999 9998888876666667777643

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.28  E-value=0.0022  Score=50.45  Aligned_cols=80  Identities=16%  Similarity=0.089  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCc-eE--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++.. ..  .|..+  .+++...+.+... ..++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  103 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD--PDSVRALFTATVEKFGRV  103 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            5678999986 8999999999999999 999999998776654 334422 12  24443  1223333322211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus       104 D~lVnnAg~  112 (272)
T 4dyv_A          104 DVLFNNAGT  112 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.27  E-value=0.0019  Score=50.70  Aligned_cols=104  Identities=21%  Similarity=0.211  Sum_probs=65.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-cccHHH----HHhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN-PWKKEK----GEAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~-~~~~~~----~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ +++|.+.++.+...|+ +|+++++. .++.+.    +++.+... .  .|..+  .+++.+.+.+... 
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ--VPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4788999986 8999999999999999 88886554 333333    23345432 2  24333  2233333332211 


Q ss_pred             CCCccEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccCC
Q 025336          139 GMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ..++|+++++.|...                         ..+.++..+.++ |+++.+++..
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~  155 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT  155 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence            127999999988410                         234555667777 9999988755

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.26  E-value=0.0017  Score=51.55  Aligned_cols=77  Identities=18%  Similarity=0.269  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCce---EeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTD---FINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~---v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+ ++...   ..|..+  .+++.+.+.++   .++|
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~---~~iD   88 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQD--LSSVRRFADGV---SGAD   88 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTC--HHHHHHHHHTC---CCEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCC--HHHHHHHHHhc---CCCC
Confidence            5789999986 9999999999999999 99999999887776543 44321   124333  12233333333   3899


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++++.|.
T Consensus        89 ~lv~nAg~   96 (291)
T 3rd5_A           89 VLINNAGI   96 (291)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcC
Confidence            99999884

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.25  E-value=0.00036  Score=52.26  Aligned_cols=135  Identities=17%  Similarity=0.271  Sum_probs=80.5

Q ss_pred             CcceeeEE-ecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           22 STWSEYMV-IDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        22 g~~a~~~~-v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      ..|.+|.. .+....+.+++.+++..+..- .. ......+..  .++++.+||-+|+|. |..+..+++ .+..+|+++
T Consensus        16 p~w~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~-~~~~~~l~~--~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~v   89 (205)
T 3grz_A           16 PEWEDYQPVFKDQEIIRLDPGLAFGTGNHQ-TT-QLAMLGIER--AMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLAT   89 (205)
T ss_dssp             ETTCCCCCSSTTCEEEEESCC-----CCHH-HH-HHHHHHHHH--HCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEE
T ss_pred             ccccccccCCCCceeEEecCCcccCCCCCc-cH-HHHHHHHHH--hccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEE
Confidence            34888887 777888888888777665321 11 111111211  256789999999875 777777776 455599999


Q ss_pred             cCCcccHHHHHh----cCCc--eEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCCh---hHHHHHHHHcccCCcEEEE
Q 025336          101 DKNPWKKEKGEA----FGMT--DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP---SLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       101 ~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~  171 (254)
                      +.+++..+.+++    .+..  .++..+      ..+    ... ..||+|+......   ..+..+.+.++++ |+++.
T Consensus        90 D~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~----~~~-~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~  157 (205)
T 3grz_A           90 DISDESMTAAEENAALNGIYDIALQKTS------LLA----DVD-GKFDLIVANILAEILLDLIPQLDSHLNED-GQVIF  157 (205)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCCCEEEESS------TTT----TCC-SCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEE
T ss_pred             ECCHHHHHHHHHHHHHcCCCceEEEecc------ccc----cCC-CCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEE
Confidence            999988887765    3432  222211      111    112 3899999755433   1245556678998 99887


Q ss_pred             Ecc
Q 025336          172 IGV  174 (254)
Q Consensus       172 ~g~  174 (254)
                      ...
T Consensus       158 ~~~  160 (205)
T 3grz_A          158 SGI  160 (205)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.25  E-value=0.0017  Score=48.26  Aligned_cols=96  Identities=15%  Similarity=0.122  Sum_probs=59.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++++.+.....+...+ .|..+   .+   .+.+...  ++|++|++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~~---~~---~~~~~~~--~~d~vi~~   74 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVLQ---AA---DVDKTVA--GQDAVIVL   74 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTTS---HH---HHHHHHT--TCSEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCceEEEEecCCC---HH---HHHHHHc--CCCEEEEC
Confidence            57999987 9999999999998998 99999998766533211122221 23332   22   2333222  68999999


Q ss_pred             CCChh----------HHHHHHHHcccC-CcEEEEEccC
Q 025336          149 TGVPS----------LLSEALETTKVG-KGKVIVIGVG  175 (254)
Q Consensus       149 ~g~~~----------~~~~~~~~l~~~-~G~~v~~g~~  175 (254)
                      .+...          ....+++.+... .++++.+++.
T Consensus        75 a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           75 LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             ccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence            88532          123444444332 1578877754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.25  E-value=0.0032  Score=52.60  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .+.+|+|.|.|.+|+.+++.++..|. .|++++.++++.+.+++.|...++ |..+   .+   .+++. +-..+|+++-
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~GDat~---~~---~L~~a-gi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFYGDATR---MD---LLESA-GAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEESCTTC---HH---HHHHT-TTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEEcCCCC---HH---HHHhc-CCCccCEEEE
Confidence            34679999999999999999999999 999999999999999998876444 3332   33   23332 3348999999


Q ss_pred             cCCChhHH---HHHHHHcccCCcEEEEEc
Q 025336          148 CTGVPSLL---SEALETTKVGKGKVIVIG  173 (254)
Q Consensus       148 ~~g~~~~~---~~~~~~l~~~~G~~v~~g  173 (254)
                      +++....-   -...+.+.+. .+++.-.
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~-~~Iiara  102 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPH-LQIIARA  102 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHhCCC-CeEEEEE
Confidence            99875432   2334445565 5666543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.25  E-value=0.0046  Score=49.35  Aligned_cols=74  Identities=22%  Similarity=0.205  Sum_probs=53.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.........    +.       .  ...|+||-|+.
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~----e~-------~--~~aDvvi~~vp   73 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASAR----EF-------A--GVVDALVILVV   73 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSST----TT-------T--TTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCHH----HH-------H--hcCCEEEEECC
Confidence            579999999999999999999999 9999999999999888877654122111    11       0  15677777777


Q ss_pred             ChhHHHHH
Q 025336          151 VPSLLSEA  158 (254)
Q Consensus       151 ~~~~~~~~  158 (254)
                      .+..++..
T Consensus        74 ~~~~~~~v   81 (303)
T 3g0o_A           74 NAAQVRQV   81 (303)
T ss_dssp             SHHHHHHH
T ss_pred             CHHHHHHH
Confidence            64344444

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.25  E-value=0.0025  Score=51.05  Aligned_cols=90  Identities=22%  Similarity=0.328  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.++ +.+++.|+.. .   +     +.+.+.      ..|+|+.+
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~-~---~-----l~ell~------~aDvV~l~  203 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKF-V---D-----LETLLK------ESDVVTIH  203 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEE-C---C-----HHHHHH------HCSEEEEC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCccc-c---C-----HHHHHh------hCCEEEEe
Confidence            57899999999999999999999999 99999988776 5666777642 1   1     222221      67999988


Q ss_pred             CCChh----HH-HHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPS----LL-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +...+    .+ ...+..++++ ..++.++...
T Consensus       204 ~p~~~~t~~li~~~~l~~mk~g-a~lin~arg~  235 (307)
T 1wwk_A          204 VPLVESTYHLINEERLKLMKKT-AILINTSRGP  235 (307)
T ss_dssp             CCCSTTTTTCBCHHHHHHSCTT-CEEEECSCGG
T ss_pred             cCCChHHhhhcCHHHHhcCCCC-eEEEECCCCc
Confidence            76432    12 3567788998 8888888743

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.25  E-value=0.002  Score=51.66  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---cccHHHHH-h----cCCc-eEeCCCCCCCchHHHHHHHhhCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN---PWKKEKGE-A----FGMT-DFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~---~~~~~~~~-~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      .+.++||+|+|++|.+++..+...|+++|+++.++   .++.+.+. +    .+.. .+++..+  .+++.+.+      
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~--~~~l~~~l------  224 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED--HEQLRKEI------  224 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHH------
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch--HHHHHhhh------
Confidence            57899999999999999999999999789999898   55554432 2    2221 2344332  01122222      


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      ..+|+||+|+..
T Consensus       225 ~~aDiIINaTp~  236 (315)
T 3tnl_A          225 AESVIFTNATGV  236 (315)
T ss_dssp             HTCSEEEECSST
T ss_pred             cCCCEEEECccC
Confidence            178999999863

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.24  E-value=0.0017  Score=49.08  Aligned_cols=97  Identities=12%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+..  .+. .++..+-   .+..+.+.+...  ++|+||++.+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~-~~~~~D~---~d~~~~~~~~~~--~~d~vi~~ag   72 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNV-KAVHFDV---DWTPEEMAKQLH--GMDAIINVSG   72 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTE-EEEECCT---TSCHHHHHTTTT--TCSEEEECCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCc-eEEEecc---cCCHHHHHHHHc--CCCEEEECCc
Confidence            6899986 9999999999999999 999999987665432  122 2222221   221234444433  7999999998


Q ss_pred             Chh---------HHHHHHHHcccC-CcEEEEEccCCC
Q 025336          151 VPS---------LLSEALETTKVG-KGKVIVIGVGVD  177 (254)
Q Consensus       151 ~~~---------~~~~~~~~l~~~-~G~~v~~g~~~~  177 (254)
                      ...         ....+++.+... .++++.+++...
T Consensus        73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           73 SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             CTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             CCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            531         133444544443 148888877554

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.23  E-value=0.0034  Score=48.17  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c-CCce-EeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F-GMTD-FINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~-g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ . +... ..|..+   .+..+.+.+  ...++|+
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~--~~~~id~   79 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WDATEKALG--GIGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHT--TCCCCSE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCCC---HHHHHHHHH--HcCCCCE
Confidence            4678999987 9999999999999999 89999998876655433 2 2222 223333   332222222  2236999


Q ss_pred             EEEcCC
Q 025336          145 CFECTG  150 (254)
Q Consensus       145 v~d~~g  150 (254)
                      ++++.|
T Consensus        80 vi~~Ag   85 (244)
T 1cyd_A           80 LVNNAA   85 (244)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999988

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.23  E-value=0.0059  Score=48.46  Aligned_cols=105  Identities=18%  Similarity=0.131  Sum_probs=63.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHHH----HhcCCceEe---CCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW--KKEKG----EAFGMTDFI---NPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~~----~~~g~~~v~---~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|++++++.+  +.+.+    ++.|....+   |..+  .++....+.+...
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSD--ESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCC--HHHHHHHHHHHHH
Confidence            5789999986 9999999999999999 8988877632  22222    334543322   3332  1222222222211


Q ss_pred             -CCCccEEEEcCCChh--------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          139 -GMGVDYCFECTGVPS--------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       139 -~~~~d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                       ..++|+++++.|...                          ..+.++..+.++ |+++.+++...
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~Iv~isS~~~  189 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-ASIITTSSIQA  189 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCGGG
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-CEEEEECChhh
Confidence             127999999887410                          123344456667 89998887543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.23  E-value=0.0029  Score=49.50  Aligned_cols=86  Identities=13%  Similarity=0.084  Sum_probs=61.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +.+++|+|+|++|.+++..+...|. +|+++.++.++.+.+.+++.. +....+            +   ..+|+||+|+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~-~~~~~~------------l---~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCD-CFMEPP------------K---SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCE-EESSCC------------S---SCCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-EecHHH------------h---ccCCEEEEcc
Confidence            8899999999999999999999995 999999999988766577743 333332            1   1789999988


Q ss_pred             CCh-----hH-HHHHHHHcccCCcEEEEEc
Q 025336          150 GVP-----SL-LSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       150 g~~-----~~-~~~~~~~l~~~~G~~v~~g  173 (254)
                      +..     .. .+.+...++++ ..++++.
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~-~~v~D~v  209 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEG-KLAYDLA  209 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHC-SEEEESC
T ss_pred             cCCCCCCCCCChHHHHhhCCCC-CEEEEeC
Confidence            642     11 12222356666 6666654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.23  E-value=0.00037  Score=55.11  Aligned_cols=101  Identities=12%  Similarity=0.110  Sum_probs=69.6

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCc-eEeCCCCCCCchHHHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMT-DFINPDDEPNKSISELVKG  135 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~i~~  135 (254)
                      +....+++++.+||-+|+|. |..+..+++..|+ +|++++.+++..+.+++.    |.. .+ ....   .+.    .+
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~-~~~~---~d~----~~  125 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSK-RVLL---AGW----EQ  125 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCE-EEEE---SCG----GG
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCe-EEEE---CCh----hh
Confidence            34566788999999999875 7888889987898 999999999888887653    321 11 1111   111    12


Q ss_pred             hhCCCCccEEEEc-----CCC---hhHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFEC-----TGV---PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +.  ..||+|+..     .+.   ...+..+.+.|+|+ |++++...
T Consensus       126 ~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  169 (287)
T 1kpg_A          126 FD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI  169 (287)
T ss_dssp             CC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             CC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEEe
Confidence            22  389999864     221   23578888999999 99887553

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.22  E-value=0.0015  Score=51.56  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCc-e--EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMT-D--FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++.. .  ..|..+  .++....+.+... ..++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  104 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD--EQQIIAMVDACVAAFGGV  104 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC--HHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4778999986 8999999999999999 999999998776654 344432 1  224443  1222222322211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus       105 D~lvnnAg~  113 (277)
T 3gvc_A          105 DKLVANAGV  113 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.22  E-value=0.0028  Score=50.88  Aligned_cols=90  Identities=20%  Similarity=0.283  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++++. .+++.|+.. .   +     +.+.+.      ..|+|+.+
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~-~---~-----l~ell~------~aDvVvl~  203 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKA-V---S-----LEELLK------NSDVISLH  203 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEE-C---C-----HHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCcee-c---C-----HHHHHh------hCCEEEEe
Confidence            57899999999999999999999999 999999887764 456677542 1   1     222221      67899988


Q ss_pred             CCChh----HH-HHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPS----LL-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +...+    .+ ...+..++++ +.++.++...
T Consensus       204 ~P~~~~t~~li~~~~l~~mk~g-a~lIn~arg~  235 (313)
T 2ekl_A          204 VTVSKDAKPIIDYPQFELMKDN-VIIVNTSRAV  235 (313)
T ss_dssp             CCCCTTSCCSBCHHHHHHSCTT-EEEEESSCGG
T ss_pred             ccCChHHHHhhCHHHHhcCCCC-CEEEECCCCc
Confidence            87432    12 4567788888 8888887743

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.22  E-value=0.0039  Score=48.26  Aligned_cols=100  Identities=18%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhC-CCCccEEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH-GMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  146 (254)
                      -+.++||+|+ |++|...++.+...|+ +|+++++++++.+.     ....++..+  .++....+.++.. ..++|+++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~d--~~~v~~~~~~~~~~~g~iD~li   92 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDSG--EEEIKSVIEKINSKSIKVDTFV   92 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCSS--HHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            3678999986 9999999999999999 89999988765431     112233332  2334444444322 23799999


Q ss_pred             EcCCCh-------h-------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          147 ECTGVP-------S-------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       147 d~~g~~-------~-------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ++.|..       .                   ..+.++..+.++ |+++.+++...
T Consensus        93 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~~  148 (251)
T 3orf_A           93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGASAA  148 (251)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             ECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEechhh
Confidence            998830       0                   123444556667 89999887543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.21  E-value=0.0043  Score=50.81  Aligned_cols=128  Identities=13%  Similarity=0.098  Sum_probs=79.4

Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC----ccc---------HHHHHhcCCceEe
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN----PWK---------KEKGEAFGMTDFI  119 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~----~~~---------~~~~~~~g~~~v~  119 (254)
                      .+...+.++.....--++.+|+|+|+|..|..+++++..+|.++|++++++    .+|         ..++++...    
T Consensus       175 ~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----  250 (388)
T 1vl6_A          175 VSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP----  250 (388)
T ss_dssp             HHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc----
Confidence            334444455333322356799999999999999999999999899999998    555         233333221    


Q ss_pred             CCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEee
Q 025336          120 NPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT  197 (254)
Q Consensus       120 ~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~  197 (254)
                      ....   .++.+.++      +.|++|-+++..-.-+..++.++++ -.++.+..+.   ....+......+..+.++
T Consensus       251 ~~~~---~~L~eav~------~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalSNPt---~E~~p~~a~~~g~~i~at  315 (388)
T 1vl6_A          251 ERLS---GDLETALE------GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV---PEIDPELAREAGAFIVAT  315 (388)
T ss_dssp             TCCC---SCHHHHHT------TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS---CSSCHHHHHHTTCSEEEE
T ss_pred             cCch---hhHHHHHc------cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcCCCC---CCCCHHHHHHhcCeEEEe
Confidence            0111   44555553      5799999887433345777788876 6666665543   234444444344444443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.21  E-value=0.0019  Score=50.19  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=71.3

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc----eEeCCCCCCCchHHHHHHHh
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT----DFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~~i~~~  136 (254)
                      +.....++++.+||-+|+| .|..+..+++..+. +|++++.+++..+.+++....    .++..+-   .+.     ..
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~-----~~  116 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTK-----EF  116 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTC-----CC
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccC-----CC
Confidence            3356678899999999987 58888888887788 999999999999998875432    1221111   110     11


Q ss_pred             hCCCCccEEEEcCCC--------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          137 THGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       ....||+|+....-        ...+..+.+.|+|+ |+++....
T Consensus       117 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  160 (266)
T 3ujc_A          117 -PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY  160 (266)
T ss_dssp             -CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence             22389999975321        22467888899999 99887754

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.21  E-value=0.002  Score=50.32  Aligned_cols=80  Identities=11%  Similarity=0.114  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-------HhcCCce---EeCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-------EAFGMTD---FINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-------~~~g~~~---v~~~~~~~~~~~~~~i~~~~  137 (254)
                      .+.++||+|+ +++|...++.+...|+ +|++++++.+..+.+       +..+...   ..|..+  .++....+.+..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN--EEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHH
Confidence            4788999986 8999999999999999 898886654432222       2234322   124443  122333333221


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . ..++|+++++.|.
T Consensus        87 ~~~g~iD~lvnnAg~  101 (262)
T 3ksu_A           87 KEFGKVDIAINTVGK  101 (262)
T ss_dssp             HHHCSEEEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            1 1279999999983

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.21  E-value=0.00049  Score=52.66  Aligned_cols=102  Identities=21%  Similarity=0.186  Sum_probs=67.8

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC--ce--EeCCCCCCCchHHHHHHHhhC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM--TD--FINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~--~~--v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ....++++++||-+|+|. |..+..+++..|..+|++++.+++..+.+++...  ..  .+..+.   .+.... ... .
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~~-~~~-~  141 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQEY-ANI-V  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGGG-TTT-S
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC---CCcccc-ccc-C
Confidence            345677899999999876 8888889998874499999999988877765321  11  111111   110000 011 2


Q ss_pred             CCCccEEEEcCCCh----hHHHHHHHHcccCCcEEEEE
Q 025336          139 GMGVDYCFECTGVP----SLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       139 ~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  172 (254)
                       ..||+|+.....+    ..+..+.+.|+++ |++++.
T Consensus       142 -~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  177 (230)
T 1fbn_A          142 -EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             -CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -ccEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence             3799999655543    2378888899999 998885

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.21  E-value=0.0029  Score=48.45  Aligned_cols=98  Identities=19%  Similarity=0.255  Sum_probs=60.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe--CCCCCCCchHHHHHHHh---hCCCCcc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI--NPDDEPNKSISELVKGI---THGMGVD  143 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~---~~~~~~d  143 (254)
                      +.++||+|+ |++|...++.+...|+ +|+++++++++.+.     ....+  |..+  .+++...+.+.   .+..++|
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~~D~~~--~~~~~~~~~~~~~~~~~g~id   74 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQAD-----SNILVDGNKNW--TEQEQSILEQTASSLQGSQVD   74 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTSS-----EEEECCTTSCH--HHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCcccccc-----ccEEEeCCCCC--HHHHHHHHHHHHHHhCCCCCC
Confidence            567999986 9999999999999999 99999888765321     11122  2221  12222222222   2213899


Q ss_pred             EEEEcCCC--------hh------------------HHHHHHHHcccCCcEEEEEccCC
Q 025336          144 YCFECTGV--------PS------------------LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       144 ~v~d~~g~--------~~------------------~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +++++.|.        ..                  ..+.++..+.+. |+++.+++..
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~  132 (236)
T 1ooe_A           75 GVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAAA  132 (236)
T ss_dssp             EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC-CEEEEECchh
Confidence            99999882        10                  123344455566 8999887654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.20  E-value=0.0035  Score=49.45  Aligned_cols=104  Identities=20%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC------------cccHHHH----HhcCCce---EeCCCCCCCch
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN------------PWKKEKG----EAFGMTD---FINPDDEPNKS  128 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~------------~~~~~~~----~~~g~~~---v~~~~~~~~~~  128 (254)
                      .+.++||+|+ |++|...++.+...|+ +|++++++            .++.+.+    +..+...   ..|..+  .++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD--RAA   85 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC--HHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC--HHH
Confidence            4788999986 8999999999999999 89998876            3333322    2334322   224443  122


Q ss_pred             HHHHHHHhhC-CCCccEEEEcCCCh--------h---------------HHHHHHHHcccCCcEEEEEccCC
Q 025336          129 ISELVKGITH-GMGVDYCFECTGVP--------S---------------LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       129 ~~~~i~~~~~-~~~~d~v~d~~g~~--------~---------------~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +.+.+.+... ..++|+++++.|..        .               ..+.++..+..+ |+++.+++..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~  156 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSG-ASIITTGSVA  156 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcC-cEEEEeccch
Confidence            3233332211 12799999998741        1               122334445566 8999887643

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.20  E-value=0.0015  Score=50.76  Aligned_cols=79  Identities=24%  Similarity=0.257  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe--CCCCCCCchHHHHHHHhhC-CCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI--NPDDEPNKSISELVKGITH-GMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~~~-~~~~d~  144 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+..++++. ..+  |..+  .+++...+.+... ..++|+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~--~~~~~~~~~~~~~~~g~iD~   80 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLED--ERERVRFVEEAAYALGRVDV   80 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4678999986 9999999999999999 99999898776333344432 322  4333  1233333332211 127999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        81 lv~~Ag~   87 (256)
T 2d1y_A           81 LVNNAAI   87 (256)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.20  E-value=0.0015  Score=50.47  Aligned_cols=77  Identities=19%  Similarity=0.235  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce--EeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD--FINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.++....  ..|..+   .+..+.+.+..  .++|++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~--~~id~l   78 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEV--ERLDVL   78 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHC--SCCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC---HHHHHHHHHHh--CCCCEE
Confidence            4678999986 9999999999999999 9999999877665544332111  234443   33333333322  279999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        79 v~~Ag~   84 (246)
T 2ag5_A           79 FNVAGF   84 (246)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999873

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.20  E-value=0.0007  Score=51.89  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      +..++.+||-+|+| .|..++.+++..  +. +|++++.+++..+.+++.    |...-+....   .+..+.+.++...
T Consensus        69 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~l~~l~~~  143 (232)
T 3cbg_A           69 SLTGAKQVLEIGVF-RGYSALAMALQLPPDG-QIIACDQDPNATAIAKKYWQKAGVAEKISLRL---GPALATLEQLTQG  143 (232)
T ss_dssp             HHHTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHHHHHHTS
T ss_pred             HhcCCCEEEEecCC-CCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhc
Confidence            34567899999987 588888999876  45 899999999988887652    4321111122   3344444444321


Q ss_pred             ---CCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEc
Q 025336          140 ---MGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       140 ---~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                         ..||+||-....   ...++.+.+.++++ |.++.-.
T Consensus       144 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  182 (232)
T 3cbg_A          144 KPLPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDN  182 (232)
T ss_dssp             SSCCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEEC
T ss_pred             CCCCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence               379999943322   23578888999999 9987743

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.20  E-value=0.0036  Score=49.75  Aligned_cols=87  Identities=20%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|...   .     .+..+.+.      +.|+||.|+..
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~-----~~~~~~~~------~~D~vi~~v~~   71 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET---A-----STAKAIAE------QCDVIITMLPN   71 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---C-----SSHHHHHH------HCSEEEECCSS
T ss_pred             eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee---c-----CCHHHHHh------CCCEEEEECCC
Confidence            69999999999999988888898 8999999998888877766431   1     22222221      57899999986


Q ss_pred             hhHHHHHH-------HHcccCCcEEEEEcc
Q 025336          152 PSLLSEAL-------ETTKVGKGKVIVIGV  174 (254)
Q Consensus       152 ~~~~~~~~-------~~l~~~~G~~v~~g~  174 (254)
                      +..++..+       ..+.++ ..++.++.
T Consensus        72 ~~~~~~~~~~~~~l~~~l~~~-~~vv~~s~  100 (299)
T 1vpd_A           72 SPHVKEVALGENGIIEGAKPG-TVLIDMSS  100 (299)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECSC
T ss_pred             HHHHHHHHhCcchHhhcCCCC-CEEEECCC
Confidence            54445444       446665 55655543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.19  E-value=0.0018  Score=55.05  Aligned_cols=92  Identities=20%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|++.+++..+...+...|.. +        .++    .+..  ...|+++.
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~-~--------~~l----~ell--~~aDiVi~  338 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYR-V--------VTM----EYAA--DKADIFVT  338 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCE-E--------CCH----HHHT--TTCSEEEE
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCE-e--------CCH----HHHH--hcCCEEEE
Confidence            468899999999999999999999999 999999988765444445543 1        112    2222  27899999


Q ss_pred             cCCChhHH-HHHHHHcccCCcEEEEEccCC
Q 025336          148 CTGVPSLL-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       148 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +++....+ ...+..++++ ..++.++...
T Consensus       339 ~~~t~~lI~~~~l~~MK~g-AilINvgrg~  367 (494)
T 3d64_A          339 ATGNYHVINHDHMKAMRHN-AIVCNIGHFD  367 (494)
T ss_dssp             CSSSSCSBCHHHHHHCCTT-EEEEECSSSS
T ss_pred             CCCcccccCHHHHhhCCCC-cEEEEcCCCc
Confidence            88654444 4677889998 8888887653

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.18  E-value=0.0022  Score=51.35  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---cccHHHH-Hhc----CCc-eEeCCCCCCCchH-HHHHHHhhC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN---PWKKEKG-EAF----GMT-DFINPDDEPNKSI-SELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~---~~~~~~~-~~~----g~~-~v~~~~~~~~~~~-~~~i~~~~~  138 (254)
                      .+.++||+|+|++|.+++..+...|+++|+++.++   .++.+.+ +++    +.. .+++..+   .+. .+.+     
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~---l~~~~~~l-----  218 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD---QHAFTEAL-----  218 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC---HHHHHHHH-----
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh---hhhhHhhc-----
Confidence            57899999999999999999999999889999999   4444433 222    221 2333322   111 1112     


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                       ..+|++|+|++.
T Consensus       219 -~~~DiIINaTp~  230 (312)
T 3t4e_A          219 -ASADILTNGTKV  230 (312)
T ss_dssp             -HHCSEEEECSST
T ss_pred             -cCceEEEECCcC
Confidence             168999999864

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.18  E-value=0.0043  Score=49.97  Aligned_cols=89  Identities=16%  Similarity=0.212  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|....        .+..+.+      ...|+||-|+
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~--------~~~~e~~------~~aDvVi~~v   95 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIH--------EQARAAA------RDADIVVSML   95 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEE--------SSHHHHH------TTCSEEEECC
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEee--------CCHHHHH------hcCCEEEEEC
Confidence            4589999999999999999999999 99999999999888877665321        1122222      1567788777


Q ss_pred             CChhHHHHHH------HHcccCCcEEEEEcc
Q 025336          150 GVPSLLSEAL------ETTKVGKGKVIVIGV  174 (254)
Q Consensus       150 g~~~~~~~~~------~~l~~~~G~~v~~g~  174 (254)
                      ..+..++..+      ..+.++ ..++.++.
T Consensus        96 p~~~~~~~v~~~~~~~~~l~~~-~~vi~~st  125 (320)
T 4dll_A           96 ENGAVVQDVLFAQGVAAAMKPG-SLFLDMAS  125 (320)
T ss_dssp             SSHHHHHHHHTTTCHHHHCCTT-CEEEECSC
T ss_pred             CCHHHHHHHHcchhHHhhCCCC-CEEEecCC
Confidence            7643444433      234554 45555543

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.18  E-value=0.0028  Score=48.89  Aligned_cols=80  Identities=16%  Similarity=0.201  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceE-eCCCCCCCchHHHHHHHhhC-CCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDF-INPDDEPNKSISELVKGITH-GMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v-~~~~~~~~~~~~~~i~~~~~-~~~~d~  144 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++|...+ .|..+  .+++...+.+... ..++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            3678999986 9999999999999999 9999999887766543 3453222 34443  1223333332211 127999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        81 lvn~Ag~   87 (245)
T 1uls_A           81 VVHYAGI   87 (245)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999883

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.17  E-value=0.0014  Score=50.38  Aligned_cols=74  Identities=16%  Similarity=0.185  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe--CCCCCCCchHHHHHHHh---hCCCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI--NPDDEPNKSISELVKGI---THGMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~---~~~~~~  142 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+     +....+  |..+  .+++...+.+.   .+..++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~--~~~v~~~~~~~~~~~~~g~i   77 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSF--TEQADQVTAEVGKLLGDQKV   77 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCH--HHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEEEcCCCC--HHHHHHHHHHHHHHhCCCCC
Confidence            5678999986 9999999999999999 8999988876532     111122  2222  12222222222   221389


Q ss_pred             cEEEEcCC
Q 025336          143 DYCFECTG  150 (254)
Q Consensus       143 d~v~d~~g  150 (254)
                      |+++++.|
T Consensus        78 D~lv~~Ag   85 (241)
T 1dhr_A           78 DAILCVAG   85 (241)
T ss_dssp             EEEEECCC
T ss_pred             CEEEEccc
Confidence            99999987

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.16  E-value=0.0019  Score=52.95  Aligned_cols=91  Identities=23%  Similarity=0.341  Sum_probs=65.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCe-EEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAK-IIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~-v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .|.+|.|+|.|.+|...++.++..|+ + |++.+++.++.+.+++.|+..+        .++.+.+.      ..|+|+.
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~------~aDvV~l  227 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV--------ENIEELVA------QADIVTV  227 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC--------SSHHHHHH------TCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec--------CCHHHHHh------cCCEEEE
Confidence            67899999999999999999999999 7 9999988877777777774321        12222221      6788888


Q ss_pred             cCCChh----HH-HHHHHHcccCCcEEEEEccC
Q 025336          148 CTGVPS----LL-SEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       148 ~~g~~~----~~-~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++...+    .+ ...+..++++ +.++.++..
T Consensus       228 ~~P~t~~t~~li~~~~l~~mk~g-a~lIn~arG  259 (364)
T 2j6i_A          228 NAPLHAGTKGLINKELLSKFKKG-AWLVNTARG  259 (364)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTT-EEEEECSCG
T ss_pred             CCCCChHHHHHhCHHHHhhCCCC-CEEEECCCC
Confidence            776431    22 3456777877 777777754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.16  E-value=0.0034  Score=49.00  Aligned_cols=80  Identities=19%  Similarity=0.228  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hc-----CCc-eE--eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AF-----GMT-DF--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~-----g~~-~v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +.. ..  .|..+  .+++...+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC--HHHHHHHHHHHHH
Confidence            4678999986 9999999999999999 9999989877654332 22     111 12  24333  1233333332211


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|+++++.|.
T Consensus        83 ~~g~id~lv~~Ag~   96 (267)
T 2gdz_A           83 HFGRLDILVNNAGV   96 (267)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1279999999884

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.15  E-value=0.00063  Score=52.59  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHHHHhcCCce---EeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW--KKEKGEAFGMTD---FINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|++++++.+  ..+.+++.|...   ..|..+   ++..   ++.....++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d---~~~v---~~~~~~g~i   80 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD---PLAA---KDSFTDAGF   80 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS---TTTT---TTSSTTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC---HHHH---HHHHHhCCC
Confidence            5888999986 8999999999999999 9999988753  344556666432   223333   2222   222222389


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        81 DiLVNNAGi   89 (247)
T 4hp8_A           81 DILVNNAGI   89 (247)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999985

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.15  E-value=0.00052  Score=53.84  Aligned_cols=75  Identities=19%  Similarity=0.194  Sum_probs=48.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHH-HHHHHhhC-CCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSIS-ELVKGITH-GMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~~i~~~~~-~~~~d~v  145 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|++++++.++.+.....    ..|..+   .+.. ..+.+... ..++|++
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~---~~~~~~~~~~~~~~~g~iD~l   98 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLRE---AAYADGLPGAVAAGLGRLDIV   98 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTS---HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCC---HHHHHHHHHHHHHhcCCCCEE
Confidence            4788999986 9999999999999999 999998876554322111    122222   2222 22222111 1279999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        99 vnnAg~  104 (266)
T 3uxy_A           99 VNNAGV  104 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999884

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.15  E-value=0.0016  Score=49.40  Aligned_cols=89  Identities=16%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .+.++||+|+ +++|...++.+...|+ +|++++++++             .|..+  .++..+.+.++  + ++|++++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~--~~~v~~~~~~~--g-~id~lv~   65 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD--EKSVYHYFETI--G-AFDHLIV   65 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC--HHHHHHHHHHH--C-SEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC--HHHHHHHHHHh--C-CCCEEEE
Confidence            4678999986 9999999998888899 8999977654             23333  13333333333  2 7999999


Q ss_pred             cCCCh-----------h---------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          148 CTGVP-----------S---------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       148 ~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +.|..           +               ..+.+++.+.++ |+++.+++...
T Consensus        66 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~~sS~~~  120 (223)
T 3uce_A           66 TAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG-GSITLTSGMLS  120 (223)
T ss_dssp             CCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE-EEEEEECCGGG
T ss_pred             CCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC-eEEEEecchhh
Confidence            88742           0               122333455566 89998886543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.0017  Score=50.26  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----c--C-C-ceE--eCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----F--G-M-TDF--INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~--g-~-~~v--~~~~~~~~~~~~~~i~~~~  137 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+    .  + . ..+  .|..+  .++....+.+..
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   82 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD--CTKADTEIKDIH   82 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC--HHHHHHHHHHHH
Confidence            4678999986 9999999998888999 99999999877665432    1  2 1 112  24443  122333333221


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . ..++|+++++.|.
T Consensus        83 ~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           83 QKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHCCEEEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            1 1279999999984

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.14  E-value=0.00054  Score=52.20  Aligned_cols=101  Identities=17%  Similarity=0.065  Sum_probs=68.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-----CCeEEEEcCCcccHHHHHhc----C-----Cc--eEeCCCCCCCch-
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQG-----AAKIIGIDKNPWKKEKGEAF----G-----MT--DFINPDDEPNKS-  128 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g-----~~~v~~v~~~~~~~~~~~~~----g-----~~--~v~~~~~~~~~~-  128 (254)
                      .++++++||-+|+|. |..+..+++..+     ..+|++++.+++..+.+++.    +     ..  .++..+-   .+ 
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~  152 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI---YQV  152 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG---GGC
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh---Hhc
Confidence            578899999999876 888888998876     12899999999888877653    3     11  1221111   11 


Q ss_pred             HHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       129 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ......  .. ..||+|+........+..+.+.++++ |+++..-.
T Consensus       153 ~~~~~~--~~-~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~  194 (227)
T 2pbf_A          153 NEEEKK--EL-GLFDAIHVGASASELPEILVDLLAEN-GKLIIPIE  194 (227)
T ss_dssp             CHHHHH--HH-CCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEEE
T ss_pred             ccccCc--cC-CCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEc
Confidence            100001  12 37999997766555678899999999 98876644

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.14  E-value=0.0025  Score=49.26  Aligned_cols=80  Identities=16%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-ccHH-HHHhcCCce-E--eCCCCCCCchHHHHHHHhhC-CCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-WKKE-KGEAFGMTD-F--INPDDEPNKSISELVKGITH-GMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~-~~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~  141 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++ ++.+ .+++.+... .  .|..+  .+++...+.+... ..+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHcCC
Confidence            4678999986 9999999999999999 899998887 5544 344455332 1  24433  1223333332211 127


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        83 id~lv~nAg~   92 (249)
T 2ew8_A           83 CDILVNNAGI   92 (249)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.14  E-value=0.0022  Score=49.02  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=51.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-----hcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-----AFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      +.++||+|+ |++|...++.+...|+ +|+.++++.++.+.+.     ..+... .  .|..+  .+++.+.+.+... .
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK--AESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC--HHHHHHHHHHHHHhc
Confidence            578999986 9999999999999999 8999999987766542     234332 2  24433  1222222111110 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        79 g~id~li~~Ag~   90 (235)
T 3l77_A           79 GDVDVVVANAGL   90 (235)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            279999999874

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.14  E-value=0.0026  Score=51.82  Aligned_cols=92  Identities=15%  Similarity=0.211  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|..+++.++..|+ +|++.++++...+.+++.|...+        .++.+.+      ...|+|+-+
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell------~~aDvV~l~  227 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV--------EDLNEML------PKCDVIVIN  227 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC--------SCHHHHG------GGCSEEEEC
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc--------CCHHHHH------hcCCEEEEC
Confidence            57899999999999999999999999 89999988777777777775432        1222222      167888887


Q ss_pred             CCCh-h---H-HHHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVP-S---L-LSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~-~---~-~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +... .   . -...+..++++ ..++.++...
T Consensus       228 ~Plt~~t~~li~~~~l~~mk~g-ailIN~aRG~  259 (351)
T 3jtm_A          228 MPLTEKTRGMFNKELIGKLKKG-VLIVNNARGA  259 (351)
T ss_dssp             SCCCTTTTTCBSHHHHHHSCTT-EEEEECSCGG
T ss_pred             CCCCHHHHHhhcHHHHhcCCCC-CEEEECcCch
Confidence            7632 1   1 24667778887 8888777643

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.13  E-value=0.00017  Score=56.03  Aligned_cols=100  Identities=20%  Similarity=0.241  Sum_probs=69.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELV  133 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i  133 (254)
                      +.....++++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++    .|..   .++..+-   .++    
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~----   98 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGY----   98 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTC----
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---HhC----
Confidence            34566788999999999876 8888899998888 99999999988887754    3321   1221111   111    


Q ss_pred             HHhhCCCCccEEEEcC------CChhHHHHHHHHcccCCcEEEEEc
Q 025336          134 KGITHGMGVDYCFECT------GVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                         .....||+|+-..      .....+..+.+.|+|+ |+++...
T Consensus        99 ---~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~  140 (256)
T 1nkv_A           99 ---VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  140 (256)
T ss_dssp             ---CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             ---CcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence               1123799998522      1234578888899999 9988754

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.13  E-value=0.0039  Score=48.82  Aligned_cols=104  Identities=20%  Similarity=0.227  Sum_probs=63.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGI-DKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ +++|.+.++.+...|+ +|+++ .+++++.+.+    +..+...   ..|..+  .+++...+.+... 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD--PAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999986 9999999988888899 88776 4444444433    2344332   124443  1223333332211 


Q ss_pred             CCCccEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccCC
Q 025336          139 GMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ..++|+++++.|...                         .++.+++.++++ |+++.+++..
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS~~  164 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMSTSQ  164 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCTH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeChh
Confidence            127999999987410                         133455566677 9999887643

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.12  E-value=0.0018  Score=50.86  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      ++.+++|+|+|++|.++++.+...|+ +|+++.++.++.+.+ ++++...-++..+  ..+       +.. .++|++++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~--~~~-------~~~-~~~DivVn  186 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS--MDE-------LEG-HEFDLIIN  186 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC--SGG-------GTT-CCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEec--HHH-------hcc-CCCCEEEE
Confidence            57899999999999999999999997 999999998876544 4454310011111  011       111 38999999


Q ss_pred             cCCCh
Q 025336          148 CTGVP  152 (254)
Q Consensus       148 ~~g~~  152 (254)
                      |++..
T Consensus       187 ~t~~~  191 (271)
T 1nyt_A          187 ATSSG  191 (271)
T ss_dssp             CCSCG
T ss_pred             CCCCC
Confidence            99865

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.12  E-value=0.0037  Score=48.34  Aligned_cols=102  Identities=18%  Similarity=0.196  Sum_probs=66.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh--
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT--  137 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~--  137 (254)
                      ...++.+||-+|+|. |..++.+++.+  +. +|++++.+++..+.+++    .|...-+....   .+..+.+..+.  
T Consensus        76 ~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~l~~~  150 (247)
T 1sui_A           76 KLINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIKD  150 (247)
T ss_dssp             HHTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHS
T ss_pred             HhhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE---CCHHHHHHHHHhc
Confidence            345678999999764 77888888876  45 99999999998888765    34321111111   33333333332  


Q ss_pred             --CCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEc
Q 025336          138 --HGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       138 --~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                        ....||+||-....   ...++.+.+.++++ |.++.-.
T Consensus       151 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~  190 (247)
T 1sui_A          151 EKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN  190 (247)
T ss_dssp             GGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEEC
T ss_pred             cCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEec
Confidence              12379999943322   33577889999999 9987643

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.11  E-value=0.0024  Score=49.81  Aligned_cols=80  Identities=16%  Similarity=0.311  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hc----CCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AF----GMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~----g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++    +... .  .|..+  .+++.+.+.+... 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT--PEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 9999999999999999 9999999887665432 21    4322 2  24443  1223333322211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        83 ~g~id~lv~~Ag~   95 (263)
T 3ai3_A           83 FGGADILVNNAGT   95 (263)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999873

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.11  E-value=0.00096  Score=50.60  Aligned_cols=103  Identities=15%  Similarity=0.216  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ...++.+||-+|+|. |..+..+++..  +. +|++++.+++..+.+++    .|...-+....   .+..+.+..+...
T Consensus        55 ~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~  129 (223)
T 3duw_A           55 QIQGARNILEIGTLG-GYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRT---GLALDSLQQIENE  129 (223)
T ss_dssp             HHHTCSEEEEECCTT-SHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHHT
T ss_pred             HhhCCCEEEEecCCc-cHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhc
Confidence            445788999999874 78888888876  45 99999999988887764    34321111111   3343433333221


Q ss_pred             --CCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEcc
Q 025336          140 --MGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       140 --~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                        ..||+||-....   ...++.+.+.++++ |.++.-..
T Consensus       130 ~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~  168 (223)
T 3duw_A          130 KYEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDNV  168 (223)
T ss_dssp             TCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEESC
T ss_pred             CCCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence              379999943322   33577888999999 98776543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.11  E-value=0.0056  Score=49.14  Aligned_cols=92  Identities=20%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCcccHHHHHhcCCc-eEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAA-KIIGIDKNPWKKEKGEAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~-~v~~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+|.|+|.|.+|...++.++..|.. +|++.++++++.+.+++.|.. ......    .+.      ..  .+.|+||-|
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~----~~~------~~--~~aDvVila  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI----AKV------ED--FSPDFVMLS  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCT----TGG------GG--GCCSEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCH----HHH------hh--ccCCEEEEe
Confidence            5799999999999999999988874 799999999999988888853 222221    110      11  278999999


Q ss_pred             CCChh---HHHHHHHHcccCCcEEEEEccC
Q 025336          149 TGVPS---LLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       149 ~g~~~---~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +....   .+..+...++++ ..++.+++.
T Consensus       102 vp~~~~~~vl~~l~~~l~~~-~iv~d~~Sv  130 (314)
T 3ggo_A          102 SPVRTFREIAKKLSYILSED-ATVTDQGSV  130 (314)
T ss_dssp             SCGGGHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred             CCHHHHHHHHHHHhhccCCC-cEEEECCCC
Confidence            98653   233444556666 666666554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.10  E-value=0.0033  Score=50.93  Aligned_cols=90  Identities=26%  Similarity=0.335  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.++ +.+++.|+..    .+     +.    ++.  ...|+|+.+
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~----~~-----l~----ell--~~aDvV~l~  226 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQ----LP-----LE----EIW--PLCDFITVH  226 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEE----CC-----HH----HHG--GGCSEEEEC
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCcee----CC-----HH----HHH--hcCCEEEEe
Confidence            57899999999999999999999999 99999887665 4566777642    11     22    221  168999988


Q ss_pred             CCChh----HH-HHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPS----LL-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +...+    .+ ...+..++++ +.++.++...
T Consensus       227 ~P~t~~t~~li~~~~l~~mk~g-ailIN~arg~  258 (335)
T 2g76_A          227 TPLLPSTTGLLNDNTFAQCKKG-VRVVNCARGG  258 (335)
T ss_dssp             CCCCTTTTTSBCHHHHTTSCTT-EEEEECSCTT
T ss_pred             cCCCHHHHHhhCHHHHhhCCCC-cEEEECCCcc
Confidence            76532    12 3677888998 8888888754

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.10  E-value=0.0022  Score=49.88  Aligned_cols=79  Identities=16%  Similarity=0.226  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhCC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITHG-  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~~-  139 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+    +..+... .  .|..+  .+++.+.+.+.... 
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   84 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 9999999999888999 999999987765543    2234321 1  24443  12333333332211 


Q ss_pred             -CCccEEEEcCC
Q 025336          140 -MGVDYCFECTG  150 (254)
Q Consensus       140 -~~~d~v~d~~g  150 (254)
                       .++|+++++.|
T Consensus        85 ~g~id~lv~~Ag   96 (260)
T 2ae2_A           85 HGKLNILVNNAG   96 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence             27999999987

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.10  E-value=0.0023  Score=50.20  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC--
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH--  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~--  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+...   ..|..+  .++....+.+...  
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS--RTERDKLMQTVAHVF   96 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 9999999999999999 999999988766543    2234322   224433  2223333332221  


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      +.++|+++++.|.
T Consensus        97 ~g~id~lv~nAg~  109 (273)
T 1ae1_A           97 DGKLNILVNNAGV  109 (273)
T ss_dssp             TSCCCEEEECCCC
T ss_pred             CCCCcEEEECCCC
Confidence            1289999999874

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.10  E-value=0.0021  Score=54.47  Aligned_cols=91  Identities=24%  Similarity=0.301  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|++.+++..+...+...|.. +        .++    .+..  ...|+++-
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~--------~~l----~ell--~~aDiVi~  318 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V--------VTL----DEIV--DKGDFFIT  318 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E--------CCH----HHHT--TTCSEEEE
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-e--------cCH----HHHH--hcCCEEEE
Confidence            468899999999999999999999999 999999988765445555642 1        112    2222  26899998


Q ss_pred             cCCChhHH-HHHHHHcccCCcEEEEEccC
Q 025336          148 CTGVPSLL-SEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       148 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +.+....+ ...+..++++ ..++.+|..
T Consensus       319 ~~~t~~lI~~~~l~~MK~g-ailiNvgrg  346 (479)
T 1v8b_A          319 CTGNVDVIKLEHLLKMKNN-AVVGNIGHF  346 (479)
T ss_dssp             CCSSSSSBCHHHHTTCCTT-CEEEECSST
T ss_pred             CCChhhhcCHHHHhhcCCC-cEEEEeCCC
Confidence            87655433 3666778888 888888764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.10  E-value=0.00023  Score=57.80  Aligned_cols=103  Identities=19%  Similarity=0.162  Sum_probs=67.7

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcCC---------------c--eEeCCCCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFGM---------------T--DFINPDDE  124 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g~---------------~--~v~~~~~~  124 (254)
                      ....+.++++||-+|+|+ |..++.+++..|. .+|++++.+++..+.+++...               .  .++..+- 
T Consensus        99 ~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~-  176 (336)
T 2b25_A           99 SMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI-  176 (336)
T ss_dssp             HHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT-
T ss_pred             HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh-
Confidence            456788999999999876 8888888888763 489999999988887765211               1  1221111 


Q ss_pred             CCchHHHHHHHhhCCCCccEEEEcCCCh-hHHHHHHHHcccCCcEEEEEcc
Q 025336          125 PNKSISELVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       125 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                        .+.   ...+..+ .||+|+-....+ ..+..+.+.|+++ |+++.+..
T Consensus       177 --~~~---~~~~~~~-~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  220 (336)
T 2b25_A          177 --SGA---TEDIKSL-TFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV  220 (336)
T ss_dssp             --TCC---C--------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred             --HHc---ccccCCC-CeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence              111   1112222 699999654433 3578899999999 99987654

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.10  E-value=0.0013  Score=50.81  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce--E--eCCCCCCCchHHHHHHHhhCCCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD--F--INPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~--v--~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ ++++...  .  .|..+  .+++...+.+.....++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD--AEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC--HHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC--HHHHHHHHHHHHhhCCC
Confidence            4678999987 9999999999999999 899999988766544 3333221  1  24333  12333333322211279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |++|++.|.
T Consensus        87 d~li~~Ag~   95 (254)
T 2wsb_A           87 SILVNSAGI   95 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCcc
Confidence            999999873

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.10  E-value=0.002  Score=50.66  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh---cCCce---EeCCCCCCCchHHHHHHH-hhCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA---FGMTD---FINPDDEPNKSISELVKG-ITHGM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~i~~-~~~~~  140 (254)
                      .+.++||+|+ |++|...++.+...|+ +|++++++++..+.+++   .+...   ..|..+   .+..+.+.+ .....
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLAD---LEGAANVAEELAATR  105 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTC---HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCC---HHHHHHHHHHHHhcC
Confidence            4788999986 9999999999999999 89998866443333333   33321   224443   333322222 21123


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus       106 ~iD~lv~nAg~  116 (273)
T 3uf0_A          106 RVDVLVNNAGI  116 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            89999999874

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.09  E-value=0.00045  Score=55.64  Aligned_cols=104  Identities=22%  Similarity=0.174  Sum_probs=69.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKG  135 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~  135 (254)
                      +.....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++    .|...+ ....   .+..+..  
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v-~~~~---~d~~~~~--  139 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENV-IFVC---GDGYYGV--  139 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE---SCGGGCC--
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCe-EEEE---CChhhcc--
Confidence            34567788999999999876 8888888887542 379999999998888765    343221 1111   1111111  


Q ss_pred             hhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEc
Q 025336          136 ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                       .....||+|+....-......+.+.|+|+ |+++..-
T Consensus       140 -~~~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~  175 (317)
T 1dl5_A          140 -PEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI  175 (317)
T ss_dssp             -GGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred             -ccCCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence             11237999997655443446788899999 9887753

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.09  E-value=0.0021  Score=49.97  Aligned_cols=80  Identities=18%  Similarity=0.229  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce-E--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD-F--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+.++||+|+ +++|..+++.+...|+ +|+++++++++.+.+. +++... .  .|..+  .+++.+.+.+... ..++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK--EADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHhcCCC
Confidence            4678999987 8999999999999999 8999999988777653 344322 2  24333  1223333332211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        85 d~li~~Ag~   93 (261)
T 3n74_A           85 DILVNNAGI   93 (261)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999873

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.08  E-value=0.0026  Score=49.82  Aligned_cols=80  Identities=15%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-----hcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-----AFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.     ..+... .  .|..+  .+++...+.+... 
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 9999999999999999 8999999877655432     224322 1  24443  1223333322211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        97 ~g~iD~lvnnAg~  109 (267)
T 1vl8_A           97 FGKLDTVVNAAGI  109 (267)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1279999999874

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.07  E-value=0.0025  Score=50.70  Aligned_cols=80  Identities=18%  Similarity=0.190  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-h---cCC-c-eE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-A---FGM-T-DF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~---~g~-~-~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +   .+. . ..  .|..+  .+++...+.+... 
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD--PGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC--HHHHHHHHHHHHHH
Confidence            5778999986 9999999999999999 9999999987766543 2   231 1 12  24443  1222222222211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus       117 ~g~iD~lvnnAg~  129 (293)
T 3rih_A          117 FGALDVVCANAGI  129 (293)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999874

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.07  E-value=0.0018  Score=50.51  Aligned_cols=80  Identities=10%  Similarity=0.078  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH-HHHHhcCCceE-eCCCCCCCchHHHHHHHhhC-CCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK-EKGEAFGMTDF-INPDDEPNKSISELVKGITH-GMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~-~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~-~~~~d~  144 (254)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++. +.+++.+...+ .|..+  .+++...+.++.. ..++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC--ETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS--HHHHHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC--HHHHHHHHHHHHHhcCCCCE
Confidence            4678999986 9999999999889999 899998987654 33445554322 24443  2233333333221 127999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus       103 lv~nAg~  109 (260)
T 3gem_A          103 VVHNASE  109 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999883

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.07  E-value=0.005  Score=47.61  Aligned_cols=73  Identities=19%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           68 EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        68 ~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      -++.++||+|+ |++|..+++.+...|+ +|++++++++.   +++++...++ |. .   ++....+.++.   ++|++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~~D~-~---~~~~~~~~~~~---~iD~l   85 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDL-R---KDLDLLFEKVK---EVDIL   85 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCT-T---TCHHHHHHHSC---CCSEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---HHhhCCeEEEeeH-H---HHHHHHHHHhc---CCCEE
Confidence            36789999986 9999999999989999 89999888633   3444432222 32 2   34444444432   79999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        86 v~~Ag~   91 (249)
T 1o5i_A           86 VLNAGG   91 (249)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.06  E-value=0.0025  Score=50.00  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++...   ..|..+  .+++...+.+... ..++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN--EVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC--HHHHHHHHHHHHHHcCCC
Confidence            4788999986 9999999999999999 999999998877654 3444321   234443  1223322322211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        87 d~lv~nAg~   95 (271)
T 3tzq_B           87 DIVDNNAAH   95 (271)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998874

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.06  E-value=0.0028  Score=48.92  Aligned_cols=80  Identities=16%  Similarity=0.208  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    ..+... .  .|..+  .+++...+.+... .
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD--RQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 9999999999999999 8999999887665432    234322 2  24433  2233333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        83 g~id~lv~nAg~   94 (247)
T 2jah_A           83 GGLDILVNNAGI   94 (247)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.06  E-value=0.0027  Score=49.39  Aligned_cols=80  Identities=15%  Similarity=0.219  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce-E--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD-F--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ |++|...++.+...|+ +|++++++.++.+.+ ++++... .  .|..+  .+++...+.+... ..++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   83 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR--QDSIDAAIAATVEHAGGL   83 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC--HHHHHHHHHHHHHHcCCC
Confidence            4688999986 9999999999889999 899999988776654 3444322 2  24443  2233333333221 2279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        84 d~lv~~Ag~   92 (259)
T 4e6p_A           84 DILVNNAAL   92 (259)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999884

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.06  E-value=0.0014  Score=52.33  Aligned_cols=94  Identities=18%  Similarity=0.092  Sum_probs=61.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHH-HHhcCCc--eEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK-GEAFGMT--DFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~-~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ++.+++|+|+|++|.+++..+...|+.+|+++.++.++.+. ++.++..  .+++        + +.+.+..  .++|++
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~--------~-~~~~~~~--~~aDiv  208 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS--------L-AEAETRL--AEYDII  208 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC--------H-HHHHHTG--GGCSEE
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee--------H-HHHHhhh--ccCCEE
Confidence            57899999999999999999999998789999999887654 4555542  1221        1 1232222  279999


Q ss_pred             EEcCCChhH-----HHHHHHHcccCCcEEEEEcc
Q 025336          146 FECTGVPSL-----LSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       146 ~d~~g~~~~-----~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ++|++....     .......+.++ ..++++..
T Consensus       209 In~t~~~~~~~~~~~~i~~~~l~~~-~~v~D~~y  241 (297)
T 2egg_A          209 INTTSVGMHPRVEVQPLSLERLRPG-VIVSDIIY  241 (297)
T ss_dssp             EECSCTTCSSCCSCCSSCCTTCCTT-CEEEECCC
T ss_pred             EECCCCCCCCCCCCCCCCHHHcCCC-CEEEEcCC
Confidence            999986421     00112345555 56666554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.06  E-value=0.00035  Score=53.76  Aligned_cols=97  Identities=14%  Similarity=0.116  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC----c-eEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM----T-DFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~----~-~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ..+|.+||-+|.|. |..+..+++..+. ++++++.+++-.+.+++...    . .++.      .+.......+..+ .
T Consensus        58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~------~~a~~~~~~~~~~-~  128 (236)
T 3orh_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK------GLWEDVAPTLPDG-H  128 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE------SCHHHHGGGSCTT-C
T ss_pred             ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEe------ehHHhhccccccc-C
Confidence            35789999999873 7777888877666 89999999998888876432    1 1221      2233333333333 7


Q ss_pred             ccEEE-EcCCC----------hhHHHHHHHHcccCCcEEEEEc
Q 025336          142 VDYCF-ECTGV----------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       142 ~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ||.|+ |+...          ...+..+.+.|+|+ |+++.+.
T Consensus       129 FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~  170 (236)
T 3orh_A          129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN  170 (236)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred             CceEEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence            99885 65532          12466788999999 9998764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.06  E-value=0.0029  Score=49.78  Aligned_cols=80  Identities=13%  Similarity=0.119  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCc-eE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMT-DF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    ..+.. ..  .|..+  .+++.+.+.+... .
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ--PDQVRGMLDQMTGEL  107 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4789999986 9999999999999999 9999999887766543    23322 12  24443  2233333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus       108 g~iD~lvnnAg~  119 (276)
T 3r1i_A          108 GGIDIAVCNAGI  119 (276)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.06  E-value=0.0024  Score=49.52  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----c-C--Cce-EeCCCCCCCchHHHHHHHhh-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----F-G--MTD-FINPDDEPNKSISELVKGIT-H  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~-g--~~~-v~~~~~~~~~~~~~~i~~~~-~  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+    . +  ... ..|....+.++..+.+.+.. .
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            5789999986 8999999999899999 99999999877665432    1 2  111 23331111233333333322 1


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2279999999874

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.05  E-value=0.0023  Score=50.43  Aligned_cols=80  Identities=18%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +++...   ..|..+  .++....+.+... ..++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS--AKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999986 9999999999999999 9999999887766543 344322   124433  1233332332211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus       103 D~lv~nAg~  111 (277)
T 4dqx_A          103 DVLVNNAGF  111 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999883

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.05  E-value=0.0037  Score=46.91  Aligned_cols=97  Identities=16%  Similarity=0.130  Sum_probs=67.6

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce--EeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD--FINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      ..+.++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++.+...  ++..+-   .+       ......|
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~---~~-------~~~~~~~  108 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDL---FD-------WTPDRQW  108 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCT---TS-------CCCSSCE
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccc---cc-------CCCCCce
Confidence            3467888999999875 7777777777 77 9999999999999988866322  221111   11       1223489


Q ss_pred             cEEEEcCC-----C---hhHHHHHHHHcccCCcEEEEEccC
Q 025336          143 DYCFECTG-----V---PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       143 d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      |+|+....     .   ...+..+.+.++++ |+++.....
T Consensus       109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  148 (218)
T 3ou2_A          109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT  148 (218)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred             eEEEEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence            99996442     1   33577888899999 998877654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.05  E-value=0.002  Score=50.31  Aligned_cols=80  Identities=20%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCCcccHHHH----HhcCCc-eE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARM-QGAAKIIGIDKNPWKKEKG----EAFGMT-DF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~-~g~~~v~~v~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|..+++.+.. .|+ +|++++++.++.+.+    +..+.. .+  .|..+  .+++...+.++.. 
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD--LQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC--HHHHHHHHHHHHHh
Confidence            4678999986 9999999888877 899 999999987655443    222322 22  24333  1233333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|++|++.|.
T Consensus        80 ~g~id~li~~Ag~   92 (276)
T 1wma_A           80 YGGLDVLVNNAGI   92 (276)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            1279999999873

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.05  E-value=0.0028  Score=49.59  Aligned_cols=77  Identities=16%  Similarity=0.080  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcC--Cce---EeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFG--MTD---FINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g--~~~---v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    ..+  ...   ..|..+   .+..+.+.+.. 
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~-   83 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT---EQGCQDVIEKY-   83 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS---HHHHHHHHHHC-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC---HHHHHHHHHhc-
Confidence            4678999986 9999999999889999 9999999887655432    222  211   123333   33333333322 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                       .++|+++++.|.
T Consensus        84 -g~id~lv~nAg~   95 (267)
T 3t4x_A           84 -PKVDILINNLGI   95 (267)
T ss_dssp             -CCCSEEEECCCC
T ss_pred             -CCCCEEEECCCC
Confidence             279999999884

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.05  E-value=0.0047  Score=48.05  Aligned_cols=80  Identities=10%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGI-DKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ +++|.+.++.+...|+ +|+++ .+++++.+.+    ++.+... .  .|..+  .++....+.+... 
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN--AAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4788999986 8999999999999999 88887 5555444332    3334322 2  24433  1223333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        84 ~g~id~lv~nAg~   96 (259)
T 3edm_A           84 FGEIHGLVHVAGG   96 (259)
T ss_dssp             HCSEEEEEECCCC
T ss_pred             hCCCCEEEECCCc
Confidence            1279999998873

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.04  E-value=0.0022  Score=50.65  Aligned_cols=79  Identities=22%  Similarity=0.200  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c---CCceE-e--CCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F---GMTDF-I--NPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~---g~~~v-~--~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ +   +.... +  |..+  .++....+.+... .
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGD--EALHEALVELAVRRF   83 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4778999986 9999999999999999 89999999877665432 2   33222 2  3332  1222222222211 1


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      .++|+++++.|
T Consensus        84 g~iD~lvnnAg   94 (280)
T 3tox_A           84 GGLDTAFNNAG   94 (280)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            27999999987

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.04  E-value=0.002  Score=49.97  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce-E--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD-F--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++... .  .|..+  .+++...+.+... ..++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999999999999 999999988776654 3344221 1  24433  1233333332211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        81 D~lv~nAg~   89 (254)
T 1hdc_A           81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.04  E-value=0.0046  Score=48.89  Aligned_cols=73  Identities=22%  Similarity=0.236  Sum_probs=51.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|... .       .+..+.+.      ..|+||-|+..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~~~~~------~advvi~~v~~   67 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQ-A-------SSPAEVCA------ACDITIAMLAD   67 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEE-C-------SCHHHHHH------HCSEEEECCSS
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c-------CCHHHHHH------cCCEEEEEcCC
Confidence            58899999999998888888898 8999999999988887766432 1       12222221      45777777776


Q ss_pred             hhHHHHHH
Q 025336          152 PSLLSEAL  159 (254)
Q Consensus       152 ~~~~~~~~  159 (254)
                      +..++..+
T Consensus        68 ~~~~~~v~   75 (287)
T 3pdu_A           68 PAAAREVC   75 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            53344443

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.04  E-value=0.0027  Score=48.36  Aligned_cols=75  Identities=8%  Similarity=-0.024  Sum_probs=51.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCc---eEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMT---DFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~---~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      ++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+ ++..   ...|..+   .+..+.+.+.... .+|+++
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~-~~d~lv   77 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLAS---HQEVEQLFEQLDS-IPSTVV   77 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTC---HHHHHHHHHSCSS-CCSEEE
T ss_pred             EEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCC---HHHHHHHHHHHhh-cCCEEE
Confidence            6899986 9999999999999999 89999999888776543 4321   1234443   3333333332222 459999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      ++.|.
T Consensus        78 ~~Ag~   82 (230)
T 3guy_A           78 HSAGS   82 (230)
T ss_dssp             ECCCC
T ss_pred             EeCCc
Confidence            99873

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.04  E-value=0.0033  Score=49.37  Aligned_cols=79  Identities=24%  Similarity=0.297  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.    ..+... .  .|..+  .+++.+.+.+... .
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD--PKSVEETISQQEKDF  109 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC--HHHHHHHHHHHHHHh
Confidence            4678999986 9999999988888899 8999988877655442    234321 2  24333  1223333332211 1


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      ..+|++|++.|
T Consensus       110 g~id~li~~Ag  120 (279)
T 3ctm_A          110 GTIDVFVANAG  120 (279)
T ss_dssp             SCCSEEEECGG
T ss_pred             CCCCEEEECCc
Confidence            27999999876

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.04  E-value=0.0027  Score=51.77  Aligned_cols=80  Identities=24%  Similarity=0.262  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH-----------HHHHhcCCce---EeCCCCCCCchHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK-----------EKGEAFGMTD---FINPDDEPNKSISELV  133 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~-----------~~~~~~g~~~---v~~~~~~~~~~~~~~i  133 (254)
                      .+.++||+|+ +++|.+.++.+...|+ +|+++++++++.           +.++..|...   ..|..+  .+++...+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~  120 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD--EQQISAAV  120 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHH
Confidence            5789999986 9999999999999999 999998887642           2233445322   234444  22333333


Q ss_pred             HHhhC-CCCccEEEEcCCC
Q 025336          134 KGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       134 ~~~~~-~~~~d~v~d~~g~  151 (254)
                      .++.. ..++|+++++.|.
T Consensus       121 ~~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            32211 1289999999984

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.04  E-value=0.0053  Score=49.75  Aligned_cols=89  Identities=20%  Similarity=0.343  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+.+|.|+|.|.+|...++.++..|. +|++.+++.++ +.++++|...         .++.+.+.      ..|+|+.+
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~---------~~l~~~l~------~aDvVil~  211 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF---------KPLEDLLR------ESDFVVLA  211 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE---------CCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc---------CCHHHHHh------hCCEEEEC
Confidence            56789999999999999999999999 99999998876 5555666421         11222221      56888887


Q ss_pred             CCChh----HH-HHHHHHcccCCcEEEEEccC
Q 025336          149 TGVPS----LL-SEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       149 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +....    .+ ...+..++++ ..++.++..
T Consensus       212 vp~~~~t~~~i~~~~~~~mk~~-ailIn~srg  242 (334)
T 2dbq_A          212 VPLTRETYHLINEERLKLMKKT-AILINIARG  242 (334)
T ss_dssp             CCCCTTTTTCBCHHHHHHSCTT-CEEEECSCG
T ss_pred             CCCChHHHHhhCHHHHhcCCCC-cEEEECCCC
Confidence            76432    12 3556677777 777666643

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.03  E-value=0.0031  Score=49.63  Aligned_cols=77  Identities=19%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce-E--eCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD-F--INPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~-v--~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      ++.++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +++... +  .|..+  .+++...+.+.....++|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS--EDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHhCCCC
Confidence            4678999987 9999999999889999 9999999988776653 444322 2  24443  233444444442223789


Q ss_pred             EEEEc
Q 025336          144 YCFEC  148 (254)
Q Consensus       144 ~v~d~  148 (254)
                      +++.+
T Consensus       106 ~lv~~  110 (281)
T 3ppi_A          106 YAVVA  110 (281)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            99988

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.03  E-value=0.0028  Score=50.56  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    ..+...   ..|..+  .+++.+.+.+... .
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH--LDEMVRLADEAFRLL  106 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhC
Confidence            5789999986 9999999999999999 8999999987766543    234322   234443  1223333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            279999999883

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.03  E-value=0.0014  Score=49.80  Aligned_cols=104  Identities=17%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCC-
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHG-  139 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~-  139 (254)
                      ...++.+||-+|+|. |..+..+++.++ ..+|++++.+++..+.+++    .|...-+....   .+..+.+...... 
T Consensus        61 ~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~  136 (225)
T 3tr6_A           61 KLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL---SPAKDTLAELIHAG  136 (225)
T ss_dssp             HHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHTTT
T ss_pred             HhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---CCHHHHHHHhhhcc
Confidence            345678999999875 788888888764 3499999999988888765    34321111111   3344444443321 


Q ss_pred             --CCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEcc
Q 025336          140 --MGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       140 --~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                        ..||+|+-....   ...+..+.+.++++ |.++.-..
T Consensus       137 ~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~~  175 (225)
T 3tr6_A          137 QAWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDNV  175 (225)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEECS
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence              489999943332   23577888999999 99886543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.03  E-value=0.001  Score=48.79  Aligned_cols=99  Identities=17%  Similarity=0.253  Sum_probs=65.8

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc--eEeCCCCCCCchHHHHHHHhh
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT--DFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ...++++++||-+|+|. |..+..+++. +. +|++++.+++..+.+++    .|.+  .++. .+  ..+    +....
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~--~~~----l~~~~   86 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELIL-DG--HEN----LDHYV   86 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SC--GGG----GGGTC
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-Cc--HHH----HHhhc
Confidence            45677899999988875 7788888887 77 99999999988888764    2322  2222 11  011    11122


Q ss_pred             CCCCccEEEEcCCC-----------h----hHHHHHHHHcccCCcEEEEEcc
Q 025336          138 HGMGVDYCFECTGV-----------P----SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       138 ~~~~~d~v~d~~g~-----------~----~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       ...||+|+-+.+.           +    ..+..+.+.++|+ |+++....
T Consensus        87 -~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  136 (185)
T 3mti_A           87 -REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY  136 (185)
T ss_dssp             -CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             -cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence             3379999865321           1    2357788899999 99887644

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.03  E-value=0.0039  Score=48.16  Aligned_cols=76  Identities=16%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhC-CCCccEEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH-GMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  146 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.  +  ...|..+  .+++.+.+.+... ..++|+++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~--~~~~~~~~~~~~~~~g~id~lv   86 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD--SDAVDRAFTAVEEHQGPVEVLV   86 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC--HHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999986 9999999999999999 8999988876554322  1  2334443  1223333322211 12799999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      ++.|.
T Consensus        87 ~~Ag~   91 (247)
T 1uzm_A           87 SNAGL   91 (247)
T ss_dssp             EECSC
T ss_pred             ECCCC
Confidence            99874

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.03  E-value=0.002  Score=49.59  Aligned_cols=79  Identities=22%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC--CCeEEEEcCCcccHHHHHhc-CCc-eE--eCCCCCCCchHHHHHHHh---hCC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQG--AAKIIGIDKNPWKKEKGEAF-GMT-DF--INPDDEPNKSISELVKGI---THG  139 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g--~~~v~~v~~~~~~~~~~~~~-g~~-~v--~~~~~~~~~~~~~~i~~~---~~~  139 (254)
                      +.++||+|+ |.+|..+++.+...|  + +|++++++.++.+.+++. +.. .+  .|..+  .+.+...+.++   .+.
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~   79 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTC--DKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTC--HHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCC--HHHHHHHHHHHHHhcCC
Confidence            568999986 999999999998899  7 999999998877776655 222 12  24333  12233333322   221


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus        80 ~~id~li~~Ag~   91 (250)
T 1yo6_A           80 DGLSLLINNAGV   91 (250)
T ss_dssp             GCCCEEEECCCC
T ss_pred             CCCcEEEECCcc
Confidence            279999998873

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.02  E-value=0.0037  Score=48.61  Aligned_cols=79  Identities=22%  Similarity=0.252  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce-E--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD-F--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|++++++.++.+.+ ++++... +  .|..+  .+++.+.+.+... ..++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS--EKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHCCCC
Confidence            4678999987 9999999999999999 999999988776654 3344322 2  24333  1233333332211 1279


Q ss_pred             cEEEEcCC
Q 025336          143 DYCFECTG  150 (254)
Q Consensus       143 d~v~d~~g  150 (254)
                      |++|++.|
T Consensus        88 d~li~~Ag   95 (265)
T 2o23_A           88 DVAVNCAG   95 (265)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99999887

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.02  E-value=0.0025  Score=49.73  Aligned_cols=80  Identities=20%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcC-Cc-eE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFG-MT-DF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g-~~-~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+ .. ..  .|..+  .+++...+.+... 
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD--RAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4788999986 9999999999999999 9999999987765532    233 11 12  24333  1223222222211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        86 ~g~id~lvnnAg~   98 (262)
T 3pk0_A           86 FGGIDVVCANAGV   98 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            1279999999883

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.02  E-value=0.0026  Score=49.93  Aligned_cols=71  Identities=14%  Similarity=0.145  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCC--ceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGM--TDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      .+.+++|+|+|++|.+++..+...|+.+|+++.++.++.+.+ ++++.  ..++...+            +.. ..+|++
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~------------l~~-~~~Div  185 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA------------LEG-QSFDIV  185 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG------------GTT-CCCSEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH------------hcc-cCCCEE
Confidence            578999999999999999999999977899999998876654 44443  22332221            111 389999


Q ss_pred             EEcCCCh
Q 025336          146 FECTGVP  152 (254)
Q Consensus       146 ~d~~g~~  152 (254)
                      ++|++..
T Consensus       186 InaTp~g  192 (272)
T 3pwz_A          186 VNATSAS  192 (272)
T ss_dssp             EECSSGG
T ss_pred             EECCCCC
Confidence            9998753

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.02  E-value=0.0038  Score=49.33  Aligned_cols=80  Identities=11%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|.+.++.+...|+ +|++++++.++.+.+.+    .+... .  .|..+  .++....+.+... .
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD--ELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4678999986 8999999999999999 99999999877665432    23222 2  24433  2233333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus       104 g~iD~lVnnAg~  115 (283)
T 3v8b_A          104 GHLDIVVANAGI  115 (283)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.01  E-value=0.0015  Score=50.52  Aligned_cols=80  Identities=25%  Similarity=0.310  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCc---eEeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMT---DFINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~---~v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ ++..   ...|..+  .++....+.+... ..++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN--PESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC--HHHHHHHHHHHHHHcCCC
Confidence            4788999986 9999999999999999 99999998877665432 3321   1234443  2233333332211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        85 D~lv~nAg~   93 (248)
T 3op4_A           85 DILVNNAGI   93 (248)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.01  E-value=0.0029  Score=49.21  Aligned_cols=80  Identities=23%  Similarity=0.290  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc-HHHHH-hc----CCce-Ee--CCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK-KEKGE-AF----GMTD-FI--NPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~-~~~~~-~~----g~~~-v~--~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++ .+.+. ++    +... .+  |..+  .+++...+.+...
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   79 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK--GEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            3678999986 8999999999999999 89999888766 44332 21    4322 22  3333  1223333332211


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|+++++.|.
T Consensus        80 ~~g~iD~lv~~Ag~   93 (260)
T 1x1t_A           80 QMGRIDILVNNAGI   93 (260)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             hcCCCCEEEECCCC
Confidence             1279999999873

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.00  E-value=0.0021  Score=50.21  Aligned_cols=79  Identities=19%  Similarity=0.157  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-h---c--CCce-E--eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-A---F--GMTD-F--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~---~--g~~~-v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +   .  +... .  .|..+  .+++.+.+.+...
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   88 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   88 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4678999986 9999999999888999 9999999887665432 1   1  3322 2  24443  1233333332211


Q ss_pred             -CCCccEEEEcCC
Q 025336          139 -GMGVDYCFECTG  150 (254)
Q Consensus       139 -~~~~d~v~d~~g  150 (254)
                       ..++|+++++.|
T Consensus        89 ~~g~id~lv~nAg  101 (267)
T 1iy8_A           89 RFGRIDGFFNNAG  101 (267)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence             127999999987

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.00  E-value=0.0053  Score=50.02  Aligned_cols=91  Identities=22%  Similarity=0.326  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGAR-MQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~-~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .|.+|.|+|.|.+|...++.++ ..|. +|++.++++++.+.++++|...+        .++.+.+.      ..|+|+.
T Consensus       162 ~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~------~aDvVil  226 (348)
T 2w2k_A          162 RGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV--------DSLEELAR------RSDCVSV  226 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHHH------HCSEEEE
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe--------CCHHHHhc------cCCEEEE
Confidence            5789999999999999999999 9999 99999998877766666665421        11222221      5688888


Q ss_pred             cCCChh----HH-HHHHHHcccCCcEEEEEccC
Q 025336          148 CTGVPS----LL-SEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       148 ~~g~~~----~~-~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++....    .+ ...+..++++ ..++.++..
T Consensus       227 ~vp~~~~t~~li~~~~l~~mk~g-ailin~srg  258 (348)
T 2w2k_A          227 SVPYMKLTHHLIDEAFFAAMKPG-SRIVNTARG  258 (348)
T ss_dssp             CCCCSGGGTTCBCHHHHHHSCTT-EEEEECSCG
T ss_pred             eCCCChHHHHHhhHHHHhcCCCC-CEEEECCCC
Confidence            776422    12 2456677776 666666554

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.00  E-value=0.0033  Score=49.45  Aligned_cols=80  Identities=15%  Similarity=0.129  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+... .  .|..+  .+++...+.+... -
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERY   97 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4678999986 9999999999999999 999999988765543    2234322 2  24433  1233333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        98 g~iD~lv~~Ag~  109 (277)
T 2rhc_B           98 GPVDVLVNNAGR  109 (277)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999873

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.00  E-value=0.0027  Score=49.11  Aligned_cols=80  Identities=20%  Similarity=0.219  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+    .+... .  .|..+  .+++...+.+... .
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD--PESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 9999999999999999 89999999877665432    33321 2  23333  1222222222211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            279999999874

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.00  E-value=0.0038  Score=48.76  Aligned_cols=80  Identities=15%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-CcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-NPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++ ++++.+.+    ++.+... +  .|..+  .+++...+.+... 
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK--PSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            4678999986 9999999999999999 8999888 65554432    3335432 2  24333  1223333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      -.++|++|++.|.
T Consensus        97 ~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           97 FGGLDFVMSNSGM  109 (274)
T ss_dssp             HSCEEEEECCCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999998873

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.00  E-value=0.0028  Score=49.86  Aligned_cols=96  Identities=17%  Similarity=0.144  Sum_probs=61.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +|||+|+ |.+|..+++.+...  |. +|+++++++++.+.+...+...+ .|..+   .+   .+.+...  ++|+||.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d---~~---~l~~~~~--~~d~vi~   72 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ---PE---SLQKAFA--GVSKLLF   72 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC---HH---HHHHHTT--TCSEEEE
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC---HH---HHHHHHh--cCCEEEE
Confidence            5899987 99999999888877  88 89999998877665554454332 24333   22   2333322  6899999


Q ss_pred             cCCCh-------hHHHHHHHHcccC-CcEEEEEccCC
Q 025336          148 CTGVP-------SLLSEALETTKVG-KGKVIVIGVGV  176 (254)
Q Consensus       148 ~~g~~-------~~~~~~~~~l~~~-~G~~v~~g~~~  176 (254)
                      +.+..       .....+++.+... -++++.+++..
T Consensus        73 ~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           73 ISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             cCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            98741       1223444444433 13788777643

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.00  E-value=0.0033  Score=51.98  Aligned_cols=91  Identities=13%  Similarity=0.164  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|..+++.++..|+ +|++.+++.++.+.++++|+..+        .++.+    +.  ...|+|+.+
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~--------~~l~e----ll--~~aDvV~l~  254 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATRED----MY--PVCDVVTLN  254 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHH----HG--GGCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec--------CCHHH----HH--hcCCEEEEe
Confidence            57899999999999999999999999 99999988777676666775421        11211    11  167888877


Q ss_pred             CCChh----HH-HHHHHHcccCCcEEEEEccC
Q 025336          149 TGVPS----LL-SEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       149 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +...+    .+ ...+..++++ ..++.++..
T Consensus       255 ~Plt~~t~~li~~~~l~~mk~g-ailIN~aRG  285 (393)
T 2nac_A          255 CPLHPETEHMINDETLKLFKRG-AYIVNTARG  285 (393)
T ss_dssp             SCCCTTTTTCBSHHHHTTSCTT-EEEEECSCG
T ss_pred             cCCchHHHHHhhHHHHhhCCCC-CEEEECCCc
Confidence            76321    12 3556677777 777777654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.99  E-value=0.0083  Score=48.10  Aligned_cols=88  Identities=19%  Similarity=0.270  Sum_probs=60.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|.. +.       .+..+.+.      ..|+||.|+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~------~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGAR-LG-------RTPAEVVS------TCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCE-EC-------SCHHHHHH------HCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCE-Ec-------CCHHHHHh------cCCEEEEeCC
Confidence            569999999999999888888898 899999999988887776643 11       12222221      5788888888


Q ss_pred             ChhHHHHHHH-------HcccCCcEEEEEcc
Q 025336          151 VPSLLSEALE-------TTKVGKGKVIVIGV  174 (254)
Q Consensus       151 ~~~~~~~~~~-------~l~~~~G~~v~~g~  174 (254)
                      .+..++..+.       .+.++ ..++.++.
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~-~~vv~~s~  125 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPG-KCYVDMST  125 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTT-CEEEECSC
T ss_pred             CHHHHHHHHcCchhHhhcCCCC-CEEEECCC
Confidence            5545555543       34454 55555544

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.0021  Score=49.91  Aligned_cols=80  Identities=19%  Similarity=0.275  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCc-eE--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      ++.++||+|+ +++|...++.+...|+ +|+++++++++.+.+ ++++.. ..  .|..+  .++....+.+... ..++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   82 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN--EADATAALAFAKQEFGHV   82 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999986 9999999999999999 899999988766554 334422 12  24333  1233333332211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        83 d~lv~nAg~   91 (257)
T 3tpc_A           83 HGLVNCAGT   91 (257)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.99  E-value=0.0034  Score=48.23  Aligned_cols=73  Identities=19%  Similarity=0.101  Sum_probs=48.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+.+|||+|+ |.+|..+++.+...  |. +|+++++++++.+.+ ..+...+ .|..+   .+   .+.+...  ++|+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~d---~~---~~~~~~~--~~d~   72 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDITD---AD---SINPAFQ--GIDA   72 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTTS---HH---HHHHHHT--TCSE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCCC---HH---HHHHHHc--CCCE
Confidence            3578999986 99999999988888  78 999998987655433 1122222 23333   22   2333332  6899


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      +|++.+.
T Consensus        73 vi~~a~~   79 (253)
T 1xq6_A           73 LVILTSA   79 (253)
T ss_dssp             EEECCCC
T ss_pred             EEEeccc
Confidence            9998873

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.98  E-value=0.0029  Score=49.30  Aligned_cols=80  Identities=15%  Similarity=0.119  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcC--Cce-EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFG--MTD-FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g--~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++.  ... ..|..+  .+++...+.+... ..++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~~g~i   87 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK--RASVDAAMQKAIDALGGF   87 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC--HHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999986 9999999999999999 9999999887766543 332  211 224433  1223332322211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        88 D~lv~~Ag~   96 (263)
T 3ak4_A           88 DLLCANAGV   96 (263)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999873

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.98  E-value=0.0024  Score=49.67  Aligned_cols=80  Identities=16%  Similarity=0.191  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+    .+... .  .|..+  .++....+.+... .
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN--TDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 9999999999999999 89999999887766532    23221 2  24433  2233333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        82 g~id~lv~nAg~   93 (257)
T 3imf_A           82 GRIDILINNAAG   93 (257)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999883

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.98  E-value=0.0022  Score=49.95  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|...++.+...|+ +|++++++.++.+.+.    +.+...   ..|..+  .+++...+.++.. .
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH--SDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHhc
Confidence            5788999986 9999999998888999 8999999987765542    234322   224433  1223333322211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus       105 g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 GRCDVLVNNAGV  116 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            279999999875

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.98  E-value=0.0027  Score=49.69  Aligned_cols=79  Identities=14%  Similarity=0.214  Sum_probs=50.6

Q ss_pred             CCCEEEEEc---CCHHHHHHHHHHHHcCCCeEEEEcCCccc-HHHH-HhcCCc--e-EeCCCCCCCchHHHHHHHh---h
Q 025336           69 KGSSVAVLG---LGTVGLGAVDGARMQGAAKIIGIDKNPWK-KEKG-EAFGMT--D-FINPDDEPNKSISELVKGI---T  137 (254)
Q Consensus        69 ~~~~vlI~G---~g~~G~~~~~~a~~~g~~~v~~v~~~~~~-~~~~-~~~g~~--~-v~~~~~~~~~~~~~~i~~~---~  137 (254)
                      ++.++||+|   +|++|...++.+...|+ +|+++++++++ .+.+ ++++..  . ..|..+  .+++...+.+.   .
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN--EEHLASLAGRVTEAI   82 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC--HHHHHHHHHHHHHHh
Confidence            467899997   47999999999999999 89999888755 2333 334422  1 234443  12233333322   1


Q ss_pred             C-CCCccEEEEcCC
Q 025336          138 H-GMGVDYCFECTG  150 (254)
Q Consensus       138 ~-~~~~d~v~d~~g  150 (254)
                      + +.++|+++++.|
T Consensus        83 g~~~~iD~lv~nAg   96 (269)
T 2h7i_A           83 GAGNKLDGVVHSIG   96 (269)
T ss_dssp             CTTCCEEEEEECCC
T ss_pred             CCCCCceEEEECCc
Confidence            1 127999999887

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.98  E-value=0.0041  Score=48.38  Aligned_cols=79  Identities=13%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC--
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH--  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~--  138 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    ..+... .  .|..+  .+++...+.+...  
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ--ESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC--HHHHHHHHHHHHHhc
Confidence            3678999986 9999999999999999 9999999877665432    224321 1  24433  2333333333321  


Q ss_pred             CCCccEEEEcCC
Q 025336          139 GMGVDYCFECTG  150 (254)
Q Consensus       139 ~~~~d~v~d~~g  150 (254)
                      ..++|+++++.|
T Consensus        81 ~g~id~lvnnAg   92 (260)
T 2qq5_A           81 QGRLDVLVNNAY   92 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCceEEEECCc
Confidence            237999999984

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.98  E-value=0.0024  Score=49.09  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-----cCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-----FGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+     .+... .  .|..+  .+++.+.+.+... 
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS--EESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC--HHHHHHHHHHHHHh
Confidence            4678999986 9999999999888999 99999998776654422     24322 2  24333  2333333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|++|++.|.
T Consensus        83 ~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           83 VDGIDILVNNAGI   95 (248)
T ss_dssp             SSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999873

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.98  E-value=0.0035  Score=51.10  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|..+++.++..|+ +|++.+++. +.+.+.+.|...+        .++.+.+.      ..|+|+-+
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~--------~~l~ell~------~aDiV~l~  222 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA--------ESKDALFE------QSDVLSVH  222 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC--------SSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe--------CCHHHHHh------hCCEEEEe
Confidence            47899999999999999999999999 999998775 3445556675421        12322222      56888877


Q ss_pred             CCChhH-----HHHHHHHcccCCcEEEEEcc
Q 025336          149 TGVPSL-----LSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       149 ~g~~~~-----~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +...+.     -...+..++++ ..++.++.
T Consensus       223 ~Plt~~t~~li~~~~l~~mk~g-ailIN~aR  252 (352)
T 3gg9_A          223 LRLNDETRSIITVADLTRMKPT-ALFVNTSR  252 (352)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-CEEEECSC
T ss_pred             ccCcHHHHHhhCHHHHhhCCCC-cEEEECCC
Confidence            653211     13566777887 77777774

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.97  E-value=0.0042  Score=47.61  Aligned_cols=95  Identities=18%  Similarity=0.108  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      ++++.+||-+|+|. |..+..+++. |+ +|++++.+++..+.+++.  ..++.      .+..+.+..+.. ..||+|+
T Consensus        39 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~--~~~~~------~d~~~~~~~~~~-~~fD~i~  106 (240)
T 3dli_A           39 FKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK--FNVVK------SDAIEYLKSLPD-KYLDGVM  106 (240)
T ss_dssp             TTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT--SEEEC------SCHHHHHHTSCT-TCBSEEE
T ss_pred             hcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh--cceee------ccHHHHhhhcCC-CCeeEEE
Confidence            56788999998763 5566666665 88 899999999988888876  22332      333333333333 3899998


Q ss_pred             EcC-----CC---hhHHHHHHHHcccCCcEEEEEcc
Q 025336          147 ECT-----GV---PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       147 d~~-----g~---~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      -..     ..   ...+..+.+.|+|+ |+++....
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  141 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMKYS-SYIVIESP  141 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEEE
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEeC
Confidence            632     22   24678888999999 99887543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.97  E-value=0.0037  Score=49.15  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hc---CCceEe--CCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AF---GMTDFI--NPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~---g~~~v~--~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++   +.-..+  |..+  .+++...+.+... ..
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSS--EAGARRLAQALGELSA  104 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS--HHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC--HHHHHHHHHHHHHhcC
Confidence            4678999987 9999999999999999 9999999887665432 22   311122  3332  1223333332211 12


Q ss_pred             CccEEEEcCC
Q 025336          141 GVDYCFECTG  150 (254)
Q Consensus       141 ~~d~v~d~~g  150 (254)
                      ++|++|++.|
T Consensus       105 ~iD~lvnnAg  114 (276)
T 2b4q_A          105 RLDILVNNAG  114 (276)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.96  E-value=0.0025  Score=46.67  Aligned_cols=102  Identities=22%  Similarity=0.241  Sum_probs=68.4

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC-ceEeCCCCCCCchHHHHHHHh
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM-TDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      .....+.++.+||-+|+|. |..+..+++.. . +|++++.+++..+.+++    .+. ..+ ....   .+..+.+   
T Consensus        26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~---~d~~~~~---   95 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNV-TLME---GDAPEAL---   95 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEE---SCHHHHH---
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcce-EEEe---cCHHHhc---
Confidence            3556778899999999876 77777877766 5 99999999988888765    343 111 1111   2333322   


Q ss_pred             hCCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEcc
Q 025336          137 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .....||+|+.....   ...+..+.+.++++ |+++....
T Consensus        96 ~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~~  135 (192)
T 1l3i_A           96 CKIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTAI  135 (192)
T ss_dssp             TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             ccCCCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEec
Confidence            221379999965431   34677888889999 99887643

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.96  E-value=0.0036  Score=48.07  Aligned_cols=103  Identities=19%  Similarity=0.130  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh---
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT---  137 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~---  137 (254)
                      ...++.+||-+|+|. |..++.+++.+. ..++++++.+++..+.+++    .|...-+....   .+..+.+..+.   
T Consensus        67 ~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~l~~~~  142 (237)
T 3c3y_A           67 KLVNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE---SDAMLALDNLLQGQ  142 (237)
T ss_dssp             HHTTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHST
T ss_pred             HhhCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhcc
Confidence            345678999998764 777788888763 2399999999998888764    34321111111   33444443332   


Q ss_pred             -CCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEc
Q 025336          138 -HGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       138 -~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                       ....||+||-....   ...++.+.+.++++ |.++.-.
T Consensus       143 ~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~  181 (237)
T 3c3y_A          143 ESEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDN  181 (237)
T ss_dssp             TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEec
Confidence             12379999944332   23577888999999 9887643

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.96  E-value=0.003  Score=49.63  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=59.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +|||+|+ |.+|...++.+...  |. +|+++++++++.+.+...+...+ .|..+   .+   .+.+...  ++|+||.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d---~~---~~~~~~~--~~d~vi~   71 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGD---EA---ALTSALQ--GVEKLLL   71 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTTC---HH---HHHHHTT--TCSEEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCCC---HH---HHHHHHh--CCCEEEE
Confidence            4899987 99999999888877  88 89999998877665554454332 24333   22   2333322  6899999


Q ss_pred             cCCCh-----hHHHHHHHHcccC-CcEEEEEccCC
Q 025336          148 CTGVP-----SLLSEALETTKVG-KGKVIVIGVGV  176 (254)
Q Consensus       148 ~~g~~-----~~~~~~~~~l~~~-~G~~v~~g~~~  176 (254)
                      +.+..     .....+++.+... -++++.+++..
T Consensus        72 ~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           72 ISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             CC--------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             eCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            88742     1234444444432 14788777643

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.96  E-value=0.0045  Score=47.19  Aligned_cols=79  Identities=9%  Similarity=0.028  Sum_probs=51.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceE--eCCCCCCCchHHHHHHHhhC-CCCccE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDF--INPDDEPNKSISELVKGITH-GMGVDY  144 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v--~~~~~~~~~~~~~~i~~~~~-~~~~d~  144 (254)
                      +.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+. +++....  .|..+  .+++.+.+.+... ..++|+
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVRE--EGDWARAVAAMEEAFGELSA   81 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            567999986 9999999999999999 9999999887766543 3332222  24333  2233333332211 127999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        82 li~~Ag~   88 (234)
T 2ehd_A           82 LVNNAGV   88 (234)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999873

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.95  E-value=0.0048  Score=49.67  Aligned_cols=90  Identities=13%  Similarity=0.200  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC-CcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK-NPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++ ++++ +.++++|+.. .       .++.+.+.      ..|+|+.
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~-~-------~~l~ell~------~aDvVil  208 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF-H-------DSLDSLLS------VSQFFSL  208 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE-C-------SSHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE-c-------CCHHHHHh------hCCEEEE
Confidence            57889999999999999999999999 9999988 7665 4556667532 1       12322221      6789998


Q ss_pred             cCCChh----HH-HHHHHHcccCCcEEEEEccC
Q 025336          148 CTGVPS----LL-SEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       148 ~~g~~~----~~-~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++...+    .+ ...+..++++ ..++.++..
T Consensus       209 ~~p~~~~t~~~i~~~~l~~mk~g-ailIn~arg  240 (320)
T 1gdh_A          209 NAPSTPETRYFFNKATIKSLPQG-AIVVNTARG  240 (320)
T ss_dssp             CCCCCTTTTTCBSHHHHTTSCTT-EEEEECSCG
T ss_pred             eccCchHHHhhcCHHHHhhCCCC-cEEEECCCC
Confidence            876432    12 3466778888 888888764

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.95  E-value=0.0018  Score=51.15  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC-----C--------ceEeCCCCCCCchHHHHHH
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG-----M--------TDFINPDDEPNKSISELVK  134 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g-----~--------~~v~~~~~~~~~~~~~~i~  134 (254)
                      .++.+||++|+|. |..+..+++. +..+|++++.+++-.+.+++.-     .        +.-+....   .+..+.+.
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~---~D~~~~l~  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI---GDGFEFIK  148 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE---SCHHHHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE---CchHHHhc
Confidence            4568999998764 6677777777 7669999999999888887532     0        10011111   33444444


Q ss_pred             HhhCCCCccEEE-EcCC---------ChhHHHHHHHHcccCCcEEEEE
Q 025336          135 GITHGMGVDYCF-ECTG---------VPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       135 ~~~~~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      .  . ..||+|+ |...         ....+..+.+.|+++ |.++..
T Consensus       149 ~--~-~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~  192 (281)
T 1mjf_A          149 N--N-RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQ  192 (281)
T ss_dssp             H--C-CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEE
T ss_pred             c--c-CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEE
Confidence            3  3 3899998 4331         133578888999999 998875

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.95  E-value=0.0044  Score=47.74  Aligned_cols=80  Identities=21%  Similarity=0.338  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+.+++++++.+.+.    +.+...   ..|..+  .+++...+.+.. ..
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD--IESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            3678999986 9999999998888999 9999999887665543    334322   124433  233333333332 22


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        81 ~~id~li~~Ag~   92 (247)
T 3lyl_A           81 LAIDILVNNAGI   92 (247)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.94  E-value=0.0014  Score=48.62  Aligned_cols=101  Identities=19%  Similarity=0.227  Sum_probs=67.8

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCC-c--eEeCCCCCCCchHHHHHHH
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGM-T--DFINPDDEPNKSISELVKG  135 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~-~--~v~~~~~~~~~~~~~~i~~  135 (254)
                      ...++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|. .  .++..+-   .++    ..
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~----~~   88 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH---QNM----DK   88 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG---GGG----GG
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHH----hh
Confidence            34567889999999875 788888888864 2389999999988888765    333 1  2222211   111    11


Q ss_pred             hhCCCCccEEEEcCCC---------------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFECTGV---------------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ... ..||+|+-..+-               ...+..+.+.++++ |+++....
T Consensus        89 ~~~-~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~  140 (197)
T 3eey_A           89 YID-CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVIY  140 (197)
T ss_dssp             TCC-SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             hcc-CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEEc
Confidence            122 389999955422               13688899999999 99887653

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.94  E-value=0.00077  Score=51.43  Aligned_cols=101  Identities=21%  Similarity=0.175  Sum_probs=68.4

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC----ceEeCCCCCCCchHHHHHHHhh
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM----TDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      .....+.++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++...    ..++..+      ..+.   ..
T Consensus        63 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d------~~~~---~~  130 (231)
T 1vbf_A           63 LDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGD------GTLG---YE  130 (231)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESC------GGGC---CG
T ss_pred             HHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECC------cccc---cc
Confidence            3556778899999999875 77888888764 5 89999999998888876421    1122211      1110   11


Q ss_pred             CCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          138 HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       138 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ....||+|+....-......+.+.++++ |+++..-..
T Consensus       131 ~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~~  167 (231)
T 1vbf_A          131 EEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIGV  167 (231)
T ss_dssp             GGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEECS
T ss_pred             cCCCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEcC
Confidence            1237999997655443456788899999 998776443

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.94  E-value=0.0025  Score=49.85  Aligned_cols=80  Identities=16%  Similarity=0.262  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-----cCCce---EeCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-----FGMTD---FINPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----~g~~~---v~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+     .+...   ..|..+  .++....+.+... 
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE--PDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--TTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            4688999986 9999999999999999 89999998877655421     34322   224443  2333333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        96 ~g~id~lv~nAg~  108 (266)
T 4egf_A           96 FGGLDVLVNNAGI  108 (266)
T ss_dssp             HTSCSEEEEECCC
T ss_pred             cCCCCEEEECCCc
Confidence            1279999999874

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.94  E-value=0.0014  Score=51.25  Aligned_cols=80  Identities=9%  Similarity=0.058  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eEeCCCCCCCchHHHHHHHhhC-CCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DFINPDDEPNKSISELVKGITH-GMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v  145 (254)
                      .+.++||+|+ |++|...++.+...|+ +|++++++.++.+.+...... ...|..+  .+++...+.+... ..++|++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD~l   91 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTD--KYTFDTAITRAEKIYGPADAI   91 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTC--HHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCC--HHHHHHHHHHHHHHCCCCCEE
Confidence            4678999986 9999999999999999 899998887665443221111 1224433  1223333322211 1279999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        92 vnnAg~   97 (266)
T 3p19_A           92 VNNAGM   97 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999884

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.94  E-value=0.0022  Score=50.02  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC--
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH--  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~--  138 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+... +  .|..+  .+++.+.+.+...  
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL--RPEREKLMQTVSSMF   89 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4678999986 9999999999999999 999999987765543    2234322 1  23333  1222333322211  


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      +.++|++|++.|.
T Consensus        90 ~~~id~li~~Ag~  102 (266)
T 1xq1_A           90 GGKLDILINNLGA  102 (266)
T ss_dssp             TTCCSEEEEECCC
T ss_pred             CCCCcEEEECCCC
Confidence            1289999999874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.94  E-value=0.0013  Score=50.05  Aligned_cols=98  Identities=17%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC------CeEEEEcCCcccHHHHHhc----C-------CceEeCCCCCCCch
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGA------AKIIGIDKNPWKKEKGEAF----G-------MTDFINPDDEPNKS  128 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~------~~v~~v~~~~~~~~~~~~~----g-------~~~v~~~~~~~~~~  128 (254)
                      .++++++||-+|+|. |..+..+++..+.      .+|++++.+++..+.+++.    +       .-.++..      +
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~------d  153 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG------D  153 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES------C
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC------C
Confidence            578899999999876 8888888887662      3899999999888777642    1       1112211      1


Q ss_pred             HHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       129 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ..+   .+.....||+|+.+.........+.+.|+++ |+++..-.
T Consensus       154 ~~~---~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~~~  195 (227)
T 1r18_A          154 GRK---GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPVG  195 (227)
T ss_dssp             GGG---CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             ccc---CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEEEe
Confidence            111   1112237999998776555668889999999 98876543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.94  E-value=0.0034  Score=49.62  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc-------H----HHHHhcCCce-E--eCCCCCCCchHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK-------K----EKGEAFGMTD-F--INPDDEPNKSISELV  133 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~-------~----~~~~~~g~~~-v--~~~~~~~~~~~~~~i  133 (254)
                      ++.++||+|+ +++|...++.+...|+ +|+++++++++       .    +.++..+... .  .|..+  .++....+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~   84 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD--GDAVAAAV   84 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS--HHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHH
Confidence            4678999986 8999999999889999 99999998763       2    2223344322 1  24443  12233333


Q ss_pred             HHhhC-CCCccEEEEcCCC
Q 025336          134 KGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       134 ~~~~~-~~~~d~v~d~~g~  151 (254)
                      .++.. ..++|+++++.|.
T Consensus        85 ~~~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            32211 1279999999884

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.94  E-value=0.0041  Score=48.21  Aligned_cols=79  Identities=22%  Similarity=0.296  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+... +  .|..+  .+++.+.+.+... .
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN--TESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 9999999999998999 999999987665433    2234321 2  24333  2233333332211 1


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      .++|++|++.|
T Consensus        89 ~~id~vi~~Ag   99 (260)
T 3awd_A           89 GRVDILVACAG   99 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            27999999887

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.93  E-value=0.0033  Score=48.37  Aligned_cols=82  Identities=17%  Similarity=0.227  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcC-C-ceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFG-M-TDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g-~-~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+.+++++++.+.+.    +.+ . ..+  ++....+.+++...+.++.. 
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            5788999986 9999999999999999 9999999987766543    233 1 122  23211111223332322211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            1279999998874

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.93  E-value=0.0025  Score=49.72  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcC---CCeEEEEcCCcccHHHHHhc---CCc-eE--eCCCCCCCchHHHHHHHh--
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQG---AAKIIGIDKNPWKKEKGEAF---GMT-DF--INPDDEPNKSISELVKGI--  136 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g---~~~v~~v~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~i~~~--  136 (254)
                      ++.++||+|+ |.+|..+++.+...|   + +|++++++.++.+.++++   +.. .+  .|..+  .+++...+.++  
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   96 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEG   96 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC--hHHHHHHHHHHHH
Confidence            5678999986 999999999999889   7 999999987765544332   322 12  24333  23333333332  


Q ss_pred             -hCCCCccEEEEcCCC
Q 025336          137 -THGMGVDYCFECTGV  151 (254)
Q Consensus       137 -~~~~~~d~v~d~~g~  151 (254)
                       .+..++|++|++.|.
T Consensus        97 ~~g~~~id~li~~Ag~  112 (267)
T 1sny_A           97 VTKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HHGGGCCSEEEECCCC
T ss_pred             hcCCCCccEEEECCCc
Confidence             221269999999873

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.93  E-value=0.0037  Score=49.21  Aligned_cols=80  Identities=13%  Similarity=0.157  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+...   ..|..+  .++....+.+... .
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS--TDEVHAAVAAAVERF   99 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5788999986 9999999998889999 8999999887665542    234332   124443  1223233332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus       100 g~id~lv~nAg~  111 (279)
T 3sju_A          100 GPIGILVNSAGR  111 (279)
T ss_dssp             CSCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            279999999874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.93  E-value=0.0042  Score=49.98  Aligned_cols=80  Identities=21%  Similarity=0.153  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC--c-e--EeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM--T-D--FINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~--~-~--v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.+    .+.  . .  ..|..+  .+++...+.+...
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   83 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS--REGFKMAADEVEA   83 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4678999986 9999999999989999 89999999877665432    232  1 1  224443  2233333333211


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|++|++.|.
T Consensus        84 ~~g~id~lv~nAg~   97 (319)
T 3ioy_A           84 RFGPVSILCNNAGV   97 (319)
T ss_dssp             HTCCEEEEEECCCC
T ss_pred             hCCCCCEEEECCCc
Confidence             1279999999983

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.92  E-value=0.0024  Score=50.42  Aligned_cols=80  Identities=18%  Similarity=0.152  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+.++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. .++...   ..|..+  .++....+.+... ..++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   80 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS--LQDQKRAAERCLAAFGKI   80 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHHHHHhcCCC
Confidence            4678999986 8999999999999999 9999999988776654 344322   124333  1233333332211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        81 D~lvnnAg~   89 (281)
T 3zv4_A           81 DTLIPNAGI   89 (281)
T ss_dssp             CEEECCCCC
T ss_pred             CEEEECCCc
Confidence            999999874

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.92  E-value=0.0027  Score=49.74  Aligned_cols=80  Identities=21%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceE--eCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDF--INPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v--~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++.....  .|..+  .+++...+.+... ..++|
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD   84 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFGRLD   84 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC--HHHHHHHHHHHHHHcCCCC
Confidence            4678999986 9999999999999999 8999999887766543 3322222  24333  1223332322211 12799


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++++.|.
T Consensus        85 ~lv~nAg~   92 (270)
T 1yde_A           85 CVVNNAGH   92 (270)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998873

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.92  E-value=0.0044  Score=48.08  Aligned_cols=79  Identities=16%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      +.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    ..+... .  .|..+  .+++.+.+.+... ..
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence            467999986 9999999999999999 9999999877655432    234321 2  24443  1233333332211 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus        79 ~id~lv~nAg~   89 (256)
T 1geg_A           79 GFDVIVNNAGV   89 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.91  E-value=0.0062  Score=47.71  Aligned_cols=80  Identities=18%  Similarity=0.141  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+... +  .|..+  .+++...+.++.. .
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI  106 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC--HHHHHHHHHHHHHHC
Confidence            4678999986 9999999999999999 8999999887665432    234322 2  24333  1233333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus       107 g~iD~li~~Ag~  118 (272)
T 1yb1_A          107 GDVSILVNNAGV  118 (272)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            279999999874

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.90  E-value=0.0031  Score=48.99  Aligned_cols=80  Identities=15%  Similarity=0.085  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+... .  .|..+  .++....+.+... .
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD--EQHREAVIKAALDQF   87 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4788999986 9999999998888999 8999999887665542    334322 1  24433  1223222322211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        88 g~id~lv~nAg~   99 (256)
T 3gaf_A           88 GKITVLVNNAGG   99 (256)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.90  E-value=0.002  Score=50.66  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=68.6

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHhc-----CCce--EeCCCCCCCchHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEAF-----GMTD--FINPDDEPNKSISEL  132 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~~-----g~~~--v~~~~~~~~~~~~~~  132 (254)
                      .....++++++||-+|+| .|..+..+++..  +. +|++++.+++..+.+++.     |.+.  ++..+      ..+ 
T Consensus       103 ~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d------~~~-  173 (275)
T 1yb2_A          103 IMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD------IAD-  173 (275)
T ss_dssp             ---CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC------TTT-
T ss_pred             HHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECc------hhc-
Confidence            355678899999999987 477888888874  45 999999999888877653     5322  22211      111 


Q ss_pred             HHHhhCCCCccEEEEcCCCh-hHHHHHHHHcccCCcEEEEEccC
Q 025336          133 VKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                         ......||+|+-....+ ..+..+.+.++++ |+++.....
T Consensus       174 ---~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~  213 (275)
T 1yb2_A          174 ---FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLPN  213 (275)
T ss_dssp             ---CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEESS
T ss_pred             ---cCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence               11223799999755443 4688999999999 998887643

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.90  E-value=0.0036  Score=49.85  Aligned_cols=79  Identities=14%  Similarity=0.087  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCC-c-e--EeCCCCCCCc-hHHHHH-HHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGM-T-D--FINPDDEPNK-SISELV-KGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~-~-~--v~~~~~~~~~-~~~~~i-~~~~  137 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+. . .  ..|..+   . +....+ ..+.
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~---~~~~v~~~~~~~~   86 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD---PIATMSSLADFIK   86 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS---CHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC---cHHHHHHHHHHHH
Confidence            5778999987 9999999998888999 999999998765543    22222 1 1  234443   3 322222 2221


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . ..++|++|++.|.
T Consensus        87 ~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           87 THFGKLDILVNNAGV  101 (311)
T ss_dssp             HHHSSCCEEEECCCC
T ss_pred             HhCCCCCEEEECCcc
Confidence            1 1289999999984

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.90  E-value=0.0027  Score=49.98  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce-E--eCCCCCCCchHHHHHHHhh-CCCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD-F--INPDDEPNKSISELVKGIT-HGMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~-v--~~~~~~~~~~~~~~i~~~~-~~~~~  142 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|++++++.++.+.+. +++... .  .|..+  .+++...+.+.. ...++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD--GERIDVVAADVLARYGRV   80 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC--HHHHHHHHHHHHHhCCCC
Confidence            3578999986 9999999999999999 9999999988776654 344321 2  24433  122332222221 11279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        81 d~lv~~Ag~   89 (281)
T 3m1a_A           81 DVLVNNAGR   89 (281)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999884

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.90  E-value=0.0041  Score=47.72  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=50.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhC-CCCccEEE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITH-GMGVDYCF  146 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  146 (254)
                      +.++||+|+ |++|...++.+...|+ +|+++++++++  ..++++...+ .|..+   ++....+.+... -.++|+++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~g~id~lv   75 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEK---DDPKGLVKRALEALGGLHVLV   75 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTT---SCHHHHHHHHHHHHTSCCEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCch---HHHHHHHHHHHHHcCCCCEEE
Confidence            468999986 9999999999999999 99999888765  3334453222 23332   333333332211 12799999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      ++.|.
T Consensus        76 ~~Ag~   80 (239)
T 2ekp_A           76 HAAAV   80 (239)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99873

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.90  E-value=0.0046  Score=49.52  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=68.7

Q ss_pred             HhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHHH
Q 025336           63 KEAE-VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELVK  134 (254)
Q Consensus        63 ~~~~-~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~  134 (254)
                      .... ++++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++    .|..   .++..+-   .++     
T Consensus       110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-----  179 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDT-----  179 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC-----
T ss_pred             HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcC-----
Confidence            3444 78899999999875 7888888887788 99999999988887765    3321   1221111   110     


Q ss_pred             HhhCCCCccEEEEcC-----CChhHHHHHHHHcccCCcEEEEEcc
Q 025336          135 GITHGMGVDYCFECT-----GVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~-----g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .+ ....||+|+..-     +....+..+.+.|+|+ |+++....
T Consensus       180 ~~-~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  222 (312)
T 3vc1_A          180 PF-DKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITG  222 (312)
T ss_dssp             CC-CTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CC-CCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEc
Confidence            01 223899998632     2244688999999999 99987754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.89  E-value=0.0042  Score=48.46  Aligned_cols=80  Identities=16%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ +++|...++.+...|+ +|+++++++++.+.+.    +.+... .  .|..+  .++....+.+... .
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD--DAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999999999999 8999999987766543    234322 2  24443  2233333333211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        87 g~id~lv~nAg~   98 (264)
T 3ucx_A           87 GRVDVVINNAFR   98 (264)
T ss_dssp             SCCSEEEECCCS
T ss_pred             CCCcEEEECCCC
Confidence            279999998864

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.89  E-value=0.0032  Score=48.87  Aligned_cols=78  Identities=14%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce---EeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD---FINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ++.++||+|+ +++|...++.+...|+ +|++++++.+  +..++++...   ..|..+  .++....+.......++|+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~--~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~g~id~   82 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGE--DVVADLGDRARFAAADVTD--EAAVASALDLAETMGTLRI   82 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCH--HHHHHTCTTEEEEECCTTC--HHHHHHHHHHHHHHSCEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchH--HHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhCCCCE
Confidence            4678999986 9999999998889999 8999887543  3344455322   224443  1222222222222238999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        83 lv~nAg~   89 (257)
T 3tl3_A           83 VVNCAGT   89 (257)
T ss_dssp             EEECGGG
T ss_pred             EEECCCC
Confidence            9999883

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.89  E-value=0.007  Score=47.57  Aligned_cols=86  Identities=21%  Similarity=0.313  Sum_probs=59.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|.. .+...       .    .+.   .+.|+|+-|+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~-------~----~~~---~~~D~vi~av~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQD-------L----SLL---QTAKIIFLCTP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESC-------G----GGG---TTCSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccCC-------H----HHh---CCCCEEEEECC
Confidence            58899999999999998888899 899999999888888777753 22211       1    122   27899999998


Q ss_pred             ChhHHHHHHH----HcccCCcEEEEEcc
Q 025336          151 VPSLLSEALE----TTKVGKGKVIVIGV  174 (254)
Q Consensus       151 ~~~~~~~~~~----~l~~~~G~~v~~g~  174 (254)
                      .. .+...+.    .+.++ ..++.++.
T Consensus        67 ~~-~~~~~~~~l~~~~~~~-~~vv~~~~   92 (279)
T 2f1k_A           67 IQ-LILPTLEKLIPHLSPT-AIVTDVAS   92 (279)
T ss_dssp             HH-HHHHHHHHHGGGSCTT-CEEEECCS
T ss_pred             HH-HHHHHHHHHHhhCCCC-CEEEECCC
Confidence            65 3343333    34444 55555533

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.88  E-value=0.0027  Score=48.93  Aligned_cols=75  Identities=11%  Similarity=0.049  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-c--CCcccHHHHH-hc-CCceEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGI-D--KNPWKKEKGE-AF-GMTDFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~--~~~~~~~~~~-~~-g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      +.++||+|+ |++|...++.+...|+ +|+++ +  +++++.+.+. ++ +.+ +.+..+  ...+.+.+.+..  .++|
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~--v~~~~~~~~~~~--g~iD   74 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGTI-ALAEQK--PERLVDATLQHG--EAID   74 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCC--GGGHHHHHGGGS--SCEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHH--HHHHHHHHHHHc--CCCC
Confidence            357899986 8999999999999999 99998 6  8877666543 34 322 333322  233444443322  2799


Q ss_pred             EEEEcCC
Q 025336          144 YCFECTG  150 (254)
Q Consensus       144 ~v~d~~g  150 (254)
                      +++++.|
T Consensus        75 ~lv~~Ag   81 (244)
T 1zmo_A           75 TIVSNDY   81 (244)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.88  E-value=0.0032  Score=50.92  Aligned_cols=90  Identities=21%  Similarity=0.357  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|..+++.++..|+ +|++.++++++.+..+.+|...         .++.+.+.      ..|+|+-+
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~---------~~l~ell~------~aDvV~l~  207 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQ---------VACSELFA------SSDFILLA  207 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEE---------CCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCcee---------CCHHHHHh------hCCEEEEc
Confidence            57899999999999999999999999 9999998876666666666421         11222221      56777776


Q ss_pred             CCChh----HH-HHHHHHcccCCcEEEEEccC
Q 025336          149 TGVPS----LL-SEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       149 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +...+    .+ ...+..++++ ..++.++..
T Consensus       208 ~P~t~~t~~li~~~~l~~mk~g-ailIN~arg  238 (330)
T 4e5n_A          208 LPLNADTLHLVNAELLALVRPG-ALLVNPCRG  238 (330)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-EEEEECSCG
T ss_pred             CCCCHHHHHHhCHHHHhhCCCC-cEEEECCCC
Confidence            65311    11 3566677777 777776654

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.88  E-value=0.0047  Score=48.49  Aligned_cols=80  Identities=16%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc-------HHH----HHhcCCce---EeCCCCCCCchHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK-------KEK----GEAFGMTD---FINPDDEPNKSISELV  133 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~-------~~~----~~~~g~~~---v~~~~~~~~~~~~~~i  133 (254)
                      +++++||+|+ +++|...++.+...|+ +|++++++.++       .+.    ++..+...   ..|..+  .++....+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~   81 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE--EDQVRAAV   81 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC--HHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHH
Confidence            4688999986 9999999999889999 99999888754       222    12234322   224443  12233333


Q ss_pred             HHhhC-CCCccEEEEcCCC
Q 025336          134 KGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       134 ~~~~~-~~~~d~v~d~~g~  151 (254)
                      .++.. ..++|+++++.|.
T Consensus        82 ~~~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCc
Confidence            32211 1279999999984

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.87  E-value=0.0023  Score=49.60  Aligned_cols=93  Identities=19%  Similarity=0.236  Sum_probs=57.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCC--CCccEEEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHG--MGVDYCFE  147 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~--~~~d~v~d  147 (254)
                      .++||+|+ |++|..+++.+...|+ +|+++++++++.+.      ....|..+   .   +.+++....  .++|++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------~~~~Dl~~---~---~~v~~~~~~~~~~id~lv~   68 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------DLSTAEGR---K---QAIADVLAKCSKGMDGLVL   68 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH---H---HHHHHHHTTCTTCCSEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------ccccCCCC---H---HHHHHHHHHhCCCCCEEEE
Confidence            36899986 9999999999989999 89999888765421      10011111   1   123322221  37899999


Q ss_pred             cCCChh------------------HHHHHHHHccc-CCcEEEEEccCC
Q 025336          148 CTGVPS------------------LLSEALETTKV-GKGKVIVIGVGV  176 (254)
Q Consensus       148 ~~g~~~------------------~~~~~~~~l~~-~~G~~v~~g~~~  176 (254)
                      +.|...                  ..+.++..+.. +.|+++.+++..
T Consensus        69 ~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           69 CAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             CCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            987532                  12334444432 227899887654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.87  E-value=0.0054  Score=47.87  Aligned_cols=80  Identities=14%  Similarity=0.070  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-----cCCc--eE--eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-----FGMT--DF--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----~g~~--~v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.++||+|+ +++|...++.+...|+ +|+++++++++.+.+.+     .+..  ..  .|..+  .++....+.+...
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   83 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD--ALQVRAFAEACER   83 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC--HHHHHHHHHHHHH
Confidence            4678999986 8999999999999999 89999999876655422     3322  12  24443  1222222222211


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|+++++.|.
T Consensus        84 ~~g~id~lvnnAg~   97 (265)
T 3lf2_A           84 TLGCASILVNNAGQ   97 (265)
T ss_dssp             HHCSCSEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1279999999984

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.87  E-value=0.0051  Score=49.77  Aligned_cols=90  Identities=19%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++.++.+.+.+.|...+    +     +.+.+.      ..|+|+.+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~-----l~e~l~------~aDvVi~~  217 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV----S-----TPELAA------QSDFIVVA  217 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC----C-----HHHHHH------HCSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC----C-----HHHHHh------hCCEEEEe
Confidence            46789999999999999999999999 89999988777766666664321    1     222221      67899988


Q ss_pred             CCChh----HH-HHHHHHcccCCcEEEEEccC
Q 025336          149 TGVPS----LL-SEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       149 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +....    .+ ...+..++++ ..++..+..
T Consensus       218 vp~~~~t~~~i~~~~~~~mk~g-ailIn~srg  248 (330)
T 2gcg_A          218 CSLTPATEGLCNKDFFQKMKET-AVFINISRG  248 (330)
T ss_dssp             CCCCTTTTTCBSHHHHHHSCTT-CEEEECSCG
T ss_pred             CCCChHHHHhhCHHHHhcCCCC-cEEEECCCC
Confidence            86431    22 3566778777 777666554

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.87  E-value=0.0048  Score=48.58  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      .+.++||+|+ |++|.+.++.+...|+ +|++++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4788999986 9999999999999999 89999886

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.86  E-value=0.003  Score=50.23  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hc----CCce-E--eCCCCCCCchHHHHHHHhh-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AF----GMTD-F--INPDDEPNKSISELVKGIT-H  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~----g~~~-v--~~~~~~~~~~~~~~i~~~~-~  138 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++    +... +  .|..+  .+++...+.+.. .
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD--PDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999999999999 8999999877665432 21    4322 2  24333  223333333221 1


Q ss_pred             CCCccEEEEcCC
Q 025336          139 GMGVDYCFECTG  150 (254)
Q Consensus       139 ~~~~d~v~d~~g  150 (254)
                      ..++|++|++.|
T Consensus       102 ~g~id~li~~Ag  113 (302)
T 1w6u_A          102 AGHPNIVINNAA  113 (302)
T ss_dssp             TCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            227999999987

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.86  E-value=0.0041  Score=48.40  Aligned_cols=80  Identities=15%  Similarity=0.101  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCc-e--EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMT-D--FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++... .  ..|..+  .+++.+.+.+... ..++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   82 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFGGL   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999986 9999999999888999 9999999887665543 33221 1  224433  1233333332211 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        83 D~lv~~Ag~   91 (260)
T 1nff_A           83 HVLVNNAGI   91 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.86  E-value=0.0032  Score=49.44  Aligned_cols=80  Identities=20%  Similarity=0.331  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCceEe---CCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTDFI---NPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~v~---~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+    ++.|....+   |..+  .+++.+.+.+.. ..
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS--ESEIIEAFARLDEQG  101 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHC
Confidence            4788999986 9999999999999999 999999988766544    233433222   3332  223333333322 12


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus       102 g~iD~lv~nAg~  113 (271)
T 4ibo_A          102 IDVDILVNNAGI  113 (271)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999884

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.86  E-value=0.0032  Score=49.06  Aligned_cols=80  Identities=23%  Similarity=0.302  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.|... .  .|..+  .+++...+.+... -
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            4678999986 9999999999999999 8999999877665432    234322 2  24443  1223222322211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        83 g~id~lv~nAg~   94 (262)
T 1zem_A           83 GKIDFLFNNAGY   94 (262)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.007  Score=51.35  Aligned_cols=94  Identities=12%  Similarity=0.109  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHh-cCCce-EeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEA-FGMTD-FINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~-~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ++.+|+|+|+|.+|..++..+... |. +|++++++.++.+.+.+ .+... .++..+  .+++.+.+    .  ++|+|
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d--~~~l~~~l----~--~~DvV   92 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD--DSALDKVL----A--DNDVV   92 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC--HHHHHHHH----H--TSSEE
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC--HHHHHHHH----c--CCCEE
Confidence            356899999999999999888877 67 89999999887765543 23322 234332  11222222    1  78999


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ++|++..........++..+ -.++..
T Consensus        93 In~tp~~~~~~v~~a~l~~g-~~vvd~  118 (467)
T 2axq_A           93 ISLIPYTFHPNVVKSAIRTK-TDVVTS  118 (467)
T ss_dssp             EECSCGGGHHHHHHHHHHHT-CEEEEC
T ss_pred             EECCchhhhHHHHHHHHhcC-CEEEEe
Confidence            99998652222333455555 455543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.85  E-value=0.0024  Score=48.48  Aligned_cols=98  Identities=20%  Similarity=0.243  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhc----C-----Cc--eEeCCCCCCCchHHHHH
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAF----G-----MT--DFINPDDEPNKSISELV  133 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~----g-----~~--~v~~~~~~~~~~~~~~i  133 (254)
                      .++++++||-+|+|. |..+..+++..|. .+|++++.+++..+.+++.    +     .+  .++..      +...  
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~------d~~~--  144 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG------DGRM--  144 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES------CGGG--
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC------Cccc--
Confidence            377899999999875 8888888888763 2899999999888877542    2     11  12211      1110  


Q ss_pred             HHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          134 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       .......||+|+........+..+.+.++++ |+++..-.
T Consensus       145 -~~~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~  183 (226)
T 1i1n_A          145 -GYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPVG  183 (226)
T ss_dssp             -CCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             -CcccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEe
Confidence             0111237999997665555678899999999 99877543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.85  E-value=0.0017  Score=51.27  Aligned_cols=80  Identities=16%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c----CCc-eE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F----GMT-DF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~----g~~-~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+ +    +.. ..  .|..+  .+++.+.+.+... 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  108 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD--PDQVAALFAAVRAE  108 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999986 9999999999999999 99999999877665432 1    211 22  24443  2223333322211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus       109 ~g~iD~lvnnAG~  121 (281)
T 4dry_A          109 FARLDLLVNNAGS  121 (281)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999874

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.85  E-value=0.0039  Score=48.47  Aligned_cols=80  Identities=15%  Similarity=0.179  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+    +..+...   ..|..+  .+++...+.+... .
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK--AEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 9999999999999999 999999987765543    2234322   123333  1223222222211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        90 g~iD~lv~~Ag~  101 (260)
T 2zat_A           90 GGVDILVSNAAV  101 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.84  E-value=0.0059  Score=48.59  Aligned_cols=80  Identities=20%  Similarity=0.173  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC------------cccHHH----HHhcCCce---EeCCCCCCCch
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN------------PWKKEK----GEAFGMTD---FINPDDEPNKS  128 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~------------~~~~~~----~~~~g~~~---v~~~~~~~~~~  128 (254)
                      .+.++||+|+ +++|.+.++.+...|+ +|++++++            +++.+.    ++..+...   ..|..+  .++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~  103 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD--FDA  103 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC--HHH
Confidence            4788999986 8999999999999999 99998876            333332    23345332   224443  122


Q ss_pred             HHHHHHHhhC-CCCccEEEEcCCC
Q 025336          129 ISELVKGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       129 ~~~~i~~~~~-~~~~d~v~d~~g~  151 (254)
                      +...+.+... ..++|+++++.|.
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            3333332211 1279999998873

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.84  E-value=0.003  Score=50.01  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +..+|+|+|+|++|..+++.+...|.+++..+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457899999999999999999999999999998775

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.84  E-value=0.0024  Score=49.60  Aligned_cols=67  Identities=18%  Similarity=0.227  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      ++ +++|+|+|++|.+++..+...|+++|+++.++.++.+.+.+ ++   ....     .+..+.+.      .+|+|++
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~---~~~~-----~~~~~~~~------~aDiVIn  172 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVK---IFSL-----DQLDEVVK------KAKSLFN  172 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCE---EEEG-----GGHHHHHH------TCSEEEE
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcc---cCCH-----HHHHhhhc------CCCEEEE
Confidence            46 89999999999999999999998789999998877654322 22   1111     22322221      7899999


Q ss_pred             cCC
Q 025336          148 CTG  150 (254)
Q Consensus       148 ~~g  150 (254)
                      |+.
T Consensus       173 atp  175 (253)
T 3u62_A          173 TTS  175 (253)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            885

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.84  E-value=0.0017  Score=52.72  Aligned_cols=99  Identities=16%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC------C--ceEeCCCCCCCchHHHHHHHhhC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG------M--TDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g------~--~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ..+..+||.+|+|. |..+..+++..+..+|++++.+++-.+.+++.-      .  ..+ ....   .+..+.+.....
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv-~~~~---~D~~~~l~~~~~  192 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV-NLVI---GDGVAFLKNAAE  192 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTE-EEEE---SCHHHHHHTSCT
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcE-EEEE---CCHHHHHHhccC
Confidence            35668999998764 667777887765449999999999888887532      1  111 1111   344444443322


Q ss_pred             CCCccEEEE-cC---C------ChhHHHHHHHHcccCCcEEEEE
Q 025336          139 GMGVDYCFE-CT---G------VPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       139 ~~~~d~v~d-~~---g------~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                       ..||+|+- ..   +      ....+..+.+.|+++ |.++.-
T Consensus       193 -~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~  234 (334)
T 1xj5_A          193 -GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQ  234 (334)
T ss_dssp             -TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -CCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence             37999994 32   1      134678889999999 998875

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.84  E-value=0.0039  Score=49.22  Aligned_cols=70  Identities=19%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCC---ceEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGM---TDFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~---~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+.+++|+|+|++|.+++..+...|+.+|+++.++.++.+.+ ++++.   ..+....+            +.  ..+|+
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~------------l~--~~aDi  190 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ------------LK--QSYDV  190 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG------------CC--SCEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH------------hc--CCCCE
Confidence            578999999999999999998899976899999998876654 33432   12222211            11  38999


Q ss_pred             EEEcCCCh
Q 025336          145 CFECTGVP  152 (254)
Q Consensus       145 v~d~~g~~  152 (254)
                      |++|++..
T Consensus       191 IInaTp~g  198 (281)
T 3o8q_A          191 IINSTSAS  198 (281)
T ss_dssp             EEECSCCC
T ss_pred             EEEcCcCC
Confidence            99999754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.83  E-value=0.0056  Score=48.09  Aligned_cols=80  Identities=20%  Similarity=0.199  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC------------cccHHHH----HhcCCce-E--eCCCCCCCch
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN------------PWKKEKG----EAFGMTD-F--INPDDEPNKS  128 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~------------~~~~~~~----~~~g~~~-v--~~~~~~~~~~  128 (254)
                      .+.++||+|+ |++|...++.+...|+ +|++++++            .++.+.+    +..+... .  .|..+  .++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~   88 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD--RES   88 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC--HHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC--HHH
Confidence            5789999986 9999999999999999 89999876            3333322    2334322 1  24333  223


Q ss_pred             HHHHHHHhhC-CCCccEEEEcCCC
Q 025336          129 ISELVKGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       129 ~~~~i~~~~~-~~~~d~v~d~~g~  151 (254)
                      +...+.+... ..++|+++++.|.
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            3333332211 1279999999884

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.83  E-value=0.0031  Score=49.48  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCc---eEeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMT---DFINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~---~v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+..   ...|..+  .+++...+.+... .
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND--ATAVDALVESTLKEF  103 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 9999999999999999 9999999887665442    23322   1234443  1223333332211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus       104 g~iD~lvnnAg~  115 (270)
T 3ftp_A          104 GALNVLVNNAGI  115 (270)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999873

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.83  E-value=0.005  Score=48.97  Aligned_cols=79  Identities=14%  Similarity=0.136  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh---------cCCce-E--eCCCCCCCchHHHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA---------FGMTD-F--INPDDEPNKSISELVKG  135 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~---------~g~~~-v--~~~~~~~~~~~~~~i~~  135 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.+         .+... .  .|..+  .+++...+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~   93 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLVKS   93 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC--HHHHHHHHHH
Confidence            4678999986 9999999999999999 89999998776554321         13221 1  23333  1223333322


Q ss_pred             hhC-CCCccEEEEcCC
Q 025336          136 ITH-GMGVDYCFECTG  150 (254)
Q Consensus       136 ~~~-~~~~d~v~d~~g  150 (254)
                      ... ..++|++|++.|
T Consensus        94 ~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            211 127999999988

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.83  E-value=0.012  Score=42.31  Aligned_cols=100  Identities=19%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcCCceEe--CCCCCCCchHHHHHHHhhCCCCc
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFGMTDFI--NPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      .++++++||-+|+|. |..+..+++..|. .++++++.++ ..+.    ....++  |..+   .+..+.+........|
T Consensus        19 ~~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~~~---~~~~~~~~~~~~~~~~   89 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDFRD---ELVMKALLERVGDSKV   89 (180)
T ss_dssp             CCCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCTTS---HHHHHHHHHHHTTCCE
T ss_pred             CCCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEccccc---chhhhhhhccCCCCce
Confidence            367889999999876 8888888888642 3999999887 3322    111222  2222   2222223332333489


Q ss_pred             cEEEEc-----CCC------------hhHHHHHHHHcccCCcEEEEEccC
Q 025336          143 DYCFEC-----TGV------------PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       143 d~v~d~-----~g~------------~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      |+|+..     .+.            ...+..+.+.++++ |+++.....
T Consensus        90 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  138 (180)
T 1ej0_A           90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVFQ  138 (180)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEES
T ss_pred             eEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEec
Confidence            999972     222            24677888999999 998876543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.81  E-value=0.0078  Score=47.43  Aligned_cols=80  Identities=16%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-CcccHHHHH----hc-CCce-Ee--CCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-NPWKKEKGE----AF-GMTD-FI--NPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~~~----~~-g~~~-v~--~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++ ++++.+.+.    .. +... .+  |..+  .+++...+.+...
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  100 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK--PSEIADMMAMVAD  100 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC--HHHHHHHHHHHHH
Confidence            4678999986 9999999999999999 9999988 444444332    22 3222 22  3333  2333333333221


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|+++++.|.
T Consensus       101 ~~g~iD~lv~nAg~  114 (281)
T 3v2h_A          101 RFGGADILVNNAGV  114 (281)
T ss_dssp             HTSSCSEEEECCCC
T ss_pred             HCCCCCEEEECCCC
Confidence             1279999999884

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.81  E-value=0.011  Score=49.00  Aligned_cols=112  Identities=18%  Similarity=0.185  Sum_probs=70.8

Q ss_pred             hhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-----------cCC--ce--EeC
Q 025336           56 TGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-----------FGM--TD--FIN  120 (254)
Q Consensus        56 ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-----------~g~--~~--v~~  120 (254)
                      ..+..+.....++++++||=+|+|. |..++++++..|+.+|++++.+++-.+.+++           +|.  ..  ++.
T Consensus       160 ~~i~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~  238 (438)
T 3uwp_A          160 DLVAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  238 (438)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            3344455778899999999999874 8888999998998669999999865555532           332  22  222


Q ss_pred             CCCCCCchHHHHHHHhhCCCCccEEEEc-C-CCh---hHHHHHHHHcccCCcEEEEEccCC
Q 025336          121 PDDEPNKSISELVKGITHGMGVDYCFEC-T-GVP---SLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       121 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~-~-g~~---~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .+- ...++..   .+   ..+|+|+-. . -.+   ..+....+.|+|+ |+++..-...
T Consensus       239 GD~-~~lp~~d---~~---~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG-GrIVssE~f~  291 (438)
T 3uwp_A          239 GDF-LSEEWRE---RI---ANTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSKPFA  291 (438)
T ss_dssp             CCT-TSHHHHH---HH---HTCSEEEECCTTCCHHHHHHHHHHHTTSCTT-CEEEESSCSS
T ss_pred             Ccc-cCCcccc---cc---CCccEEEEcccccCchHHHHHHHHHHcCCCC-cEEEEeeccc
Confidence            111 0011111   11   168999842 2 122   2455677889999 9999875443

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.81  E-value=0.0042  Score=47.89  Aligned_cols=80  Identities=21%  Similarity=0.224  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-CcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-NPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++ ++++.+.+    +..+... .  .|..+  .+++...+.+... 
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN--AEDVTNMVKQTVDV   79 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            3678999986 9999999999999999 8999888 66555433    2234322 2  24433  2233333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        80 ~g~id~lv~nAg~   92 (246)
T 2uvd_A           80 FGQVDILVNNAGV   92 (246)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.80  E-value=0.015  Score=47.48  Aligned_cols=92  Identities=18%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|...   .     .+..+.+...   ..+|+||-|+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~---~-----~s~~e~~~~a---~~~DvVi~~v   89 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAG---A-----RSIEEFCAKL---VKPRVVWLMV   89 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBC---C-----SSHHHHHHHS---CSSCEEEECS
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEE---e-----CCHHHHHhcC---CCCCEEEEeC
Confidence            4579999999999999999999999 9999999999988887766431   1     2233333221   1458888887


Q ss_pred             CChhHHHHH----HHHcccCCcEEEEEccC
Q 025336          150 GVPSLLSEA----LETTKVGKGKVIVIGVG  175 (254)
Q Consensus       150 g~~~~~~~~----~~~l~~~~G~~v~~g~~  175 (254)
                      ... .+...    ...+.++ ..++..+..
T Consensus        90 p~~-~v~~vl~~l~~~l~~g-~iiId~st~  117 (358)
T 4e21_A           90 PAA-VVDSMLQRMTPLLAAN-DIVIDGGNS  117 (358)
T ss_dssp             CGG-GHHHHHHHHGGGCCTT-CEEEECSSC
T ss_pred             CHH-HHHHHHHHHHhhCCCC-CEEEeCCCC
Confidence            765 33333    3334444 455555443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.80  E-value=0.012  Score=47.08  Aligned_cols=90  Identities=17%  Similarity=0.101  Sum_probs=61.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|... .       .+..+.+.      ..|+||-|+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~e~~~------~aDvVi~~v   73 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHL-C-------ESVKAALS------ASPATIFVL   73 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEE-C-------SSHHHHHH------HSSEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-c-------CCHHHHHh------cCCEEEEEe
Confidence            4579999999999999999999999 8999999999888887766532 1       22333222      468888888


Q ss_pred             CChhHHHHHHH-----HcccCCcEEEEEccC
Q 025336          150 GVPSLLSEALE-----TTKVGKGKVIVIGVG  175 (254)
Q Consensus       150 g~~~~~~~~~~-----~l~~~~G~~v~~g~~  175 (254)
                      ..+..++..+.     .+.++ ..++.++..
T Consensus        74 p~~~~~~~v~~~~~l~~~~~g-~ivid~st~  103 (306)
T 3l6d_A           74 LDNHATHEVLGMPGVARALAH-RTIVDYTTN  103 (306)
T ss_dssp             SSHHHHHHHHTSTTHHHHTTT-CEEEECCCC
T ss_pred             CCHHHHHHHhcccchhhccCC-CEEEECCCC
Confidence            76543444332     23444 455555443

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.80  E-value=0.0011  Score=52.12  Aligned_cols=70  Identities=10%  Similarity=0.037  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+.+++|+|+|++|.+++..+...|+++|+++.++.++.+.+....  ..+        .+ +.+.+..  ..+|+||+|
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~--~~~--------~~-~~~~~~~--~~aDiVIna  182 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI--NKI--------NL-SHAESHL--DEFDIIINT  182 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCC--EEE--------CH-HHHHHTG--GGCSEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhc--ccc--------cH-hhHHHHh--cCCCEEEEC
Confidence            5788999999999999999999999878999989987765433210  111        11 1222221  278999999


Q ss_pred             CCC
Q 025336          149 TGV  151 (254)
Q Consensus       149 ~g~  151 (254)
                      ++.
T Consensus       183 Tp~  185 (277)
T 3don_A          183 TPA  185 (277)
T ss_dssp             CC-
T ss_pred             ccC
Confidence            875

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.80  E-value=0.0032  Score=48.52  Aligned_cols=80  Identities=19%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcC---CceE--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFG---MTDF--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g---~~~v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+. ++.   .-.+  .|..+  .+++...+.+... ..
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4678999986 9999999999999999 8999999877665442 222   1122  24333  1223333322211 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|++|++.|.
T Consensus        82 ~id~li~~Ag~   92 (251)
T 1zk4_A           82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.80  E-value=0.0047  Score=47.55  Aligned_cols=78  Identities=13%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hc----CCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AF----GMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~----g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      +.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+. ++    +... +  .|..+  .+++.+.+.+... .
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   78 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD--EGDVNAAIAATMEQF   78 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            568999986 9999999999889999 8999999877665442 22    3221 2  23333  1233333332211 1


Q ss_pred             CCccEEEEcCC
Q 025336          140 MGVDYCFECTG  150 (254)
Q Consensus       140 ~~~d~v~d~~g  150 (254)
                      .++|++|++.|
T Consensus        79 ~~id~li~~Ag   89 (250)
T 2cfc_A           79 GAIDVLVNNAG   89 (250)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            27999999887

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.80  E-value=0.0085  Score=46.49  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG  110 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~  110 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4678999986 9999999998888999 999999988776554

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.79  E-value=0.022  Score=46.13  Aligned_cols=74  Identities=16%  Similarity=0.263  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH----HHHHhc------CCceEe--CCCCCCCchHHHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK----EKGEAF------GMTDFI--NPDDEPNKSISELVKG  135 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~----~~~~~~------g~~~v~--~~~~~~~~~~~~~i~~  135 (254)
                      .+.+|||+|+ |.+|..+++.+...|. +|++++++....    +.++..      ....++  |..+   .+   .+.+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~---~~~~   96 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRD---LT---TCEQ   96 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTC---HH---HHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCC---HH---HHHH
Confidence            3578999987 9999999999999999 999998865432    222222      211222  3333   22   2333


Q ss_pred             hhCCCCccEEEEcCCC
Q 025336          136 ITHGMGVDYCFECTGV  151 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~  151 (254)
                      ...  ++|+||++.+.
T Consensus        97 ~~~--~~d~Vih~A~~  110 (351)
T 3ruf_A           97 VMK--GVDHVLHQAAL  110 (351)
T ss_dssp             HTT--TCSEEEECCCC
T ss_pred             Hhc--CCCEEEECCcc
Confidence            332  89999999984

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.79  E-value=0.011  Score=49.21  Aligned_cols=96  Identities=13%  Similarity=0.074  Sum_probs=62.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC--CeEEEEcCCcccHHHHH-hcC------Cce-EeCCCCCCCchHHHHHHHhhCCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGA--AKIIGIDKNPWKKEKGE-AFG------MTD-FINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~--~~v~~v~~~~~~~~~~~-~~g------~~~-v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      +|+|+|+|.+|..+++.+...|.  .+|++.+++.++.+.+. +++      ... .+|..+  .+++.+.+.+.    +
T Consensus         3 kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d--~~~l~~~l~~~----~   76 (405)
T 4ina_A            3 KVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS--IEELVALINEV----K   76 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC--HHHHHHHHHHH----C
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC--HHHHHHHHHhh----C
Confidence            68999999999999998888773  38999999988776543 332      211 233332  13333333332    6


Q ss_pred             ccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       142 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +|+|++|++.......+..++..+ -.+++...
T Consensus        77 ~DvVin~ag~~~~~~v~~a~l~~g-~~vvD~a~  108 (405)
T 4ina_A           77 PQIVLNIALPYQDLTIMEACLRTG-VPYLDTAN  108 (405)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHT-CCEEESSC
T ss_pred             CCEEEECCCcccChHHHHHHHHhC-CCEEEecC
Confidence            899999998654445555566666 66665533

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.78  E-value=0.015  Score=45.90  Aligned_cols=74  Identities=18%  Similarity=0.283  Sum_probs=50.9

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hc----CCc-eEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           69 KGSSVAVLG-LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AF----GMT-DFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G-~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~----g~~-~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++.++||+| +|++|.+++..+...|+ +|+++++++++.+.+. ++    +.. ...|..+   .+   .+.+...  .
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~---~~---~~~~~~~--~  188 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---DA---SRAEAVK--G  188 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---HH---HHHHHTT--T
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC---HH---HHHHHHH--h
Confidence            678999998 59999999999999999 7999999877665432 22    222 2234433   22   2333322  5


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|++++|++.
T Consensus       189 ~DvlVn~ag~  198 (287)
T 1lu9_A          189 AHFVFTAGAI  198 (287)
T ss_dssp             CSEEEECCCT
T ss_pred             CCEEEECCCc
Confidence            8999999973

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.78  E-value=0.01  Score=46.57  Aligned_cols=103  Identities=12%  Similarity=0.218  Sum_probs=65.6

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHHHh
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVKGI  136 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~  136 (254)
                      ...++++++||=.|+|+ |..+..+++.. +..+|++++.++++.+.+++    .|...  ++.      .+........
T Consensus        78 ~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~------~D~~~~~~~~  150 (274)
T 3ajd_A           78 VLNPREDDFILDMCAAP-GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIIN------ADMRKYKDYL  150 (274)
T ss_dssp             HHCCCTTCEEEETTCTT-CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE------SCHHHHHHHH
T ss_pred             HhCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEe------CChHhcchhh
Confidence            44678899998888764 66677777764 43489999999998887754    45432  222      2222222111


Q ss_pred             h-CCCCccEEE-E--cCCC---------------------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          137 T-HGMGVDYCF-E--CTGV---------------------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       137 ~-~~~~~d~v~-d--~~g~---------------------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      . ....||.|+ |  |.+.                     ...+..+.+.++++ |+++....
T Consensus       151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~stc  212 (274)
T 3ajd_A          151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYSTC  212 (274)
T ss_dssp             HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEC
Confidence            0 123799998 4  4431                     23577888899999 99887543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.78  E-value=0.004  Score=48.11  Aligned_cols=80  Identities=16%  Similarity=0.120  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+... +  .|..+  .+++...+.+... .
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            4678999987 9999999999988999 999999987765433    2234322 2  23333  1223333322211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus        87 ~~~d~vi~~Ag~   98 (255)
T 1fmc_A           87 GKVDILVNNAGG   98 (255)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.78  E-value=0.0035  Score=50.35  Aligned_cols=99  Identities=14%  Similarity=0.054  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC-------ceEeCCCCCCCchHHHHHHHhhCCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM-------TDFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~-------~~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      .+..+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-.       +.-+....   .+..+.+..  ...
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~---~D~~~~l~~--~~~  180 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC---GDGFEFLKN--HKN  180 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC---SCHHHHHHH--CTT
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEE---ChHHHHHHh--cCC
Confidence            3457999998764 6677777776654599999999998888876321       10011111   344444443  233


Q ss_pred             CccEEEEcCCC----------hhHHHHHHHHcccCCcEEEEEc
Q 025336          141 GVDYCFECTGV----------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       141 ~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .||+|+-....          ...+..+.+.|+++ |.++.-.
T Consensus       181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~  222 (314)
T 2b2c_A          181 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG  222 (314)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence            79999943311          34677888999999 9988754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.77  E-value=0.01  Score=46.78  Aligned_cols=41  Identities=22%  Similarity=0.296  Sum_probs=36.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA  112 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~  112 (254)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence            579999999999999999999999 99999999988776654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.77  E-value=0.023  Score=40.21  Aligned_cols=94  Identities=10%  Similarity=0.018  Sum_probs=58.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC-cccHHHHH---hcCCceEe-CCCCCCCchHHHHHHHhhCCCCccE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN-PWKKEKGE---AFGMTDFI-NPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~-~~~~~~~~---~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ..+|+|.|+|.+|...++.+...|. +|++++++ +++.+.++   ..|...+. |..+   .+   .+.+. +-.++|.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~---~~---~l~~a-~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIPGDSND---SS---VLKKA-GIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS---HH---HHHHH-TTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCeEEEcCCCC---HH---HHHHc-ChhhCCE
Confidence            4579999999999999999999999 89999887 45444443   23443332 2222   22   23332 2238999


Q ss_pred             EEEcCCChhH---HHHHHHHcccCCcEEEEE
Q 025336          145 CFECTGVPSL---LSEALETTKVGKGKVIVI  172 (254)
Q Consensus       145 v~d~~g~~~~---~~~~~~~l~~~~G~~v~~  172 (254)
                      ++-+++....   +....+.+.+. .+++..
T Consensus        75 vi~~~~~d~~n~~~~~~a~~~~~~-~~ii~~  104 (153)
T 1id1_A           75 ILALSDNDADNAFVVLSAKDMSSD-VKTVLA  104 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred             EEEecCChHHHHHHHHHHHHHCCC-CEEEEE
Confidence            9999987532   12233344444 565553

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.77  E-value=0.004  Score=48.13  Aligned_cols=80  Identities=23%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-cccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN-PWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~-~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|++++++ +++.+.+.    ..+... +  .|..+  .+++...+.+... 
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT--SEACQQLVDEFVAK   82 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 9999999999888999 89999888 66655432    224321 2  24333  2233333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|++|++.|.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999998874

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.77  E-value=0.012  Score=47.78  Aligned_cols=92  Identities=10%  Similarity=0.127  Sum_probs=63.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      .+|.|+|.|.+|...+..++..|. +|++.++++++.+.++++|... .       .+..+.+.+..  ...|+||-|+.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~-~-------~~~~e~~~~a~--~~aDlVilavP   77 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDV-S-------ADLEATLQRAA--AEDALIVLAVP   77 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCE-E-------SCHHHHHHHHH--HTTCEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee-e-------CCHHHHHHhcc--cCCCEEEEeCC
Confidence            579999999999999999999998 8999999999999898888742 2       22223332210  15789998888


Q ss_pred             ChhHHHHHHHH---cccCCcEEEEEccC
Q 025336          151 VPSLLSEALET---TKVGKGKVIVIGVG  175 (254)
Q Consensus       151 ~~~~~~~~~~~---l~~~~G~~v~~g~~  175 (254)
                      .. .+...++.   +.++ ..++.+++.
T Consensus        78 ~~-~~~~vl~~l~~~~~~-~iv~Dv~Sv  103 (341)
T 3ktd_A           78 MT-AIDSLLDAVHTHAPN-NGFTDVVSV  103 (341)
T ss_dssp             HH-HHHHHHHHHHHHCTT-CCEEECCSC
T ss_pred             HH-HHHHHHHHHHccCCC-CEEEEcCCC
Confidence            54 33333322   3454 555566544

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.76  E-value=0.0068  Score=47.04  Aligned_cols=79  Identities=16%  Similarity=0.202  Sum_probs=50.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc--HHHH-H---hcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK--KEKG-E---AFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~--~~~~-~---~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +.++||+|+ |++|...++.+...|+ +|+++++++++  .+.+ +   ..+... .  .|..+  .+++...+.+... 
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   78 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD--KANFDSAIDEAAEK   78 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            568999986 9999999988888899 89999888766  4332 2   224322 2  24433  1223332322211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      -.++|+++++.|.
T Consensus        79 ~g~iD~lv~nAg~   91 (258)
T 3a28_C           79 LGGFDVLVNNAGI   91 (258)
T ss_dssp             HTCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            1279999999873

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.76  E-value=0.008  Score=48.90  Aligned_cols=91  Identities=19%  Similarity=0.307  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.++ +..+..|+..+        .++.+.+.      ..|+|+-+
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~--------~~l~ell~------~aDvV~l~  230 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSD-GVERALGLQRV--------STLQDLLF------HSDCVTLH  230 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCT-THHHHHTCEEC--------SSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhHhhcCCeec--------CCHHHHHh------cCCEEEEc
Confidence            57899999999999999999999999 99999887654 23455665321        12222221      56888877


Q ss_pred             CCChh----HH-HHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPS----LL-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +...+    .+ ...+..++++ ..++.++...
T Consensus       231 ~P~t~~t~~li~~~~l~~mk~g-ailIN~arg~  262 (347)
T 1mx3_A          231 CGLNEHNHHLINDFTVKQMRQG-AFLVNTARGG  262 (347)
T ss_dssp             CCCCTTCTTSBSHHHHTTSCTT-EEEEECSCTT
T ss_pred             CCCCHHHHHHhHHHHHhcCCCC-CEEEECCCCh
Confidence            65321    12 4566677777 7777777654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.75  E-value=0.012  Score=45.65  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +.+|+|+|+|++|..++..+...|.+++..+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57899999999999999999999998888887654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.73  E-value=0.004  Score=49.92  Aligned_cols=93  Identities=10%  Similarity=0.019  Sum_probs=63.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhc-CC---c--eEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAF-GM---T--DFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~-g~---~--~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      .+||++|+|. |.++..+++.. +. +|++++.+++-.+.++++ +.   .  .++.      .+..+.+.+... ..||
T Consensus        91 ~rVLdIG~G~-G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~------~Da~~~l~~~~~-~~fD  161 (317)
T 3gjy_A           91 LRITHLGGGA-CTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKIRV------DDARMVAESFTP-ASRD  161 (317)
T ss_dssp             CEEEEESCGG-GHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEEEE------SCHHHHHHTCCT-TCEE
T ss_pred             CEEEEEECCc-CHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEEEE------CcHHHHHhhccC-CCCC
Confidence            3899999764 77778888854 66 999999999999988774 21   1  1221      444555544323 3899


Q ss_pred             EEEE-cCCC---------hhHHHHHHHHcccCCcEEEEEc
Q 025336          144 YCFE-CTGV---------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       144 ~v~d-~~g~---------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      +||- ....         ...+..+.+.|+++ |.++...
T Consensus       162 vIi~D~~~~~~~~~~L~t~efl~~~~r~Lkpg-Gvlv~~~  200 (317)
T 3gjy_A          162 VIIRDVFAGAITPQNFTTVEFFEHCHRGLAPG-GLYVANC  200 (317)
T ss_dssp             EEEECCSTTSCCCGGGSBHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEEe
Confidence            9984 3211         23578888999999 9887654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.73  E-value=0.0041  Score=48.76  Aligned_cols=80  Identities=6%  Similarity=0.006  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-CcccHHHHH-hc----CCce-E--eCCCCCCC----chHHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-NPWKKEKGE-AF----GMTD-F--INPDDEPN----KSISELVK  134 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~~~-~~----g~~~-v--~~~~~~~~----~~~~~~i~  134 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++ ++++.+.+. ++    +... .  .|..+  .    +.+...+.
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   86 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL--SSSLLDCCEDIID   86 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS--STTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC--ccccHHHHHHHHH
Confidence            4678999986 9999999999889999 9999988 766655432 21    4322 2  24443  2    22222222


Q ss_pred             HhhC-CCCccEEEEcCCC
Q 025336          135 GITH-GMGVDYCFECTGV  151 (254)
Q Consensus       135 ~~~~-~~~~d~v~d~~g~  151 (254)
                      +... ..++|++|++.|.
T Consensus        87 ~~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHhcCCCCEEEECCCC
Confidence            2211 1279999999873

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.73  E-value=0.0093  Score=46.75  Aligned_cols=95  Identities=17%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLG-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      .+||+...+...|....---.|.+++|+|.| .+|..+++++...|+ +|++..+.                   .   .
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t---~  196 (285)
T 3l07_A          140 LESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRF-------------------T---T  196 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---S
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------c---h
Confidence            3455544455555333333479999999975 589999999999999 77766321                   1   2


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          128 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++.+.+      +..|+++.++|.+..+.  -..++++ ..++.+|..
T Consensus       197 ~L~~~~------~~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~  235 (285)
T 3l07_A          197 DLKSHT------TKADILIVAVGKPNFIT--ADMVKEG-AVVIDVGIN  235 (285)
T ss_dssp             SHHHHH------TTCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCE
T ss_pred             hHHHhc------ccCCEEEECCCCCCCCC--HHHcCCC-cEEEEeccc
Confidence            333333      27899999999764332  2456777 788888764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.73  E-value=0.0053  Score=48.26  Aligned_cols=79  Identities=9%  Similarity=0.072  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-h----cCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-A----FGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~----~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ +++|.+.++.+...|+ +|++++++.++.+.+. +    .+... .  .|..+  .++....+.+... 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA--PPAVMAAVDQALKE  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999999999999 9999999877654432 2    24322 2  24443  1223333332211 


Q ss_pred             CCCccEEEEcCC
Q 025336          139 GMGVDYCFECTG  150 (254)
Q Consensus       139 ~~~~d~v~d~~g  150 (254)
                      ..++|+++++.|
T Consensus       103 ~g~id~lv~nAg  114 (277)
T 4fc7_A          103 FGRIDILINCAA  114 (277)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            127999999998

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.72  E-value=0.0033  Score=49.54  Aligned_cols=79  Identities=11%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC---c-eE--eCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM---T-DF--INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~---~-~v--~~~~~~~~~~~~~~i~~~~  137 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    ..+.   . .+  .|..+  .+++...+.+..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   81 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC--HHHHHHHHHHHH
Confidence            4678999986 9999999999999999 9999999887665442    2232   2 12  24443  122222232221


Q ss_pred             C-CCCccEEEEcCC
Q 025336          138 H-GMGVDYCFECTG  150 (254)
Q Consensus       138 ~-~~~~d~v~d~~g  150 (254)
                      . ..++|+++++.|
T Consensus        82 ~~~g~iD~lv~nAg   95 (280)
T 1xkq_A           82 KQFGKIDVLVNNAG   95 (280)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence            1 127999999887

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.71  E-value=0.0091  Score=44.57  Aligned_cols=96  Identities=10%  Similarity=-0.017  Sum_probs=62.0

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc-CC----------------c-eEe--CCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF-GM----------------T-DFI--NPD  122 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~-g~----------------~-~v~--~~~  122 (254)
                      ....+.++.+||..|+|. |..+..+++. |+ +|+++|.+++-.+.+++. +.                . ..+  |..
T Consensus        16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~   92 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   92 (203)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence            344567889999998764 7777778776 88 999999999988888653 11                0 111  221


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCC----C----hhHHHHHHHHcccCCcEEEEE
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTG----V----PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g----~----~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      +   ....       ....||+|++...    .    ...+..+.+.|+|+ |+++++
T Consensus        93 ~---l~~~-------~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~l~  139 (203)
T 1pjz_A           93 A---LTAR-------DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLI  139 (203)
T ss_dssp             S---STHH-------HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEE
T ss_pred             c---CCcc-------cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEEEE
Confidence            1   1110       0027999997432    1    12467788899999 984433

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.71  E-value=0.014  Score=47.71  Aligned_cols=88  Identities=22%  Similarity=0.315  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|..+++.++..|+ +|++.+++. +.+.+...|+..         .++.+.+.      ..|+|+-+
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~~~---------~~l~ell~------~aDvV~l~  237 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGVEP---------ASLEDVLT------KSDFIFVV  237 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTCEE---------CCHHHHHH------SCSEEEEC
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCeee---------CCHHHHHh------cCCEEEEc
Confidence            47899999999999999999999999 999998874 444555556431         11222111      55666665


Q ss_pred             CCChh----H-HHHHHHHcccCCcEEEEEcc
Q 025336          149 TGVPS----L-LSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       149 ~g~~~----~-~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +...+    . -...+..++++ ..++.++.
T Consensus       238 ~Plt~~T~~li~~~~l~~mk~g-ailIN~aR  267 (365)
T 4hy3_A          238 AAVTSENKRFLGAEAFSSMRRG-AAFILLSR  267 (365)
T ss_dssp             SCSSCC---CCCHHHHHTSCTT-CEEEECSC
T ss_pred             CcCCHHHHhhcCHHHHhcCCCC-cEEEECcC
Confidence            54221    1 13455566666 66666653

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.71  E-value=0.0037  Score=48.13  Aligned_cols=75  Identities=17%  Similarity=0.156  Sum_probs=47.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCCcc-cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARM-QGAAKIIGIDKNPW-KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~-~g~~~v~~v~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ++.++||+|+ +++|...++.+.. .|. +|+..+++++ ..+.+.    ....|..+  .++....+..+. ..++|++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~-~v~~~~~~~~~~~~~~~----~~~~Dv~~--~~~v~~~~~~~~-~~~id~l   74 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH-TVINIDIQQSFSAENLK----FIKADLTK--QQDITNVLDIIK-NVSFDGI   74 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE-EEEEEESSCCCCCTTEE----EEECCTTC--HHHHHHHHHHTT-TCCEEEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc-EEEEeccccccccccce----EEecCcCC--HHHHHHHHHHHH-hCCCCEE
Confidence            4668999986 8999998876665 777 8888877765 221110    11224443  233444443333 3489999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        75 v~nAg~   80 (244)
T 4e4y_A           75 FLNAGI   80 (244)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999885

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.70  E-value=0.0077  Score=48.11  Aligned_cols=99  Identities=15%  Similarity=0.010  Sum_probs=65.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC---------C-ceEeCCCCCCCchHHHHHHHh
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG---------M-TDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g---------~-~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      ..++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-         . -.++.      .+..+.+.+.
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~~~~~  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV------GDGLAFVRQT  165 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHSS
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHHhc
Confidence            35678999998764 667777777655459999999998888877532         1 11221      3344433321


Q ss_pred             hCCCCccEEEEcCCC----------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          137 THGMGVDYCFECTGV----------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      . ...||+|+-....          ...+..+.+.|+++ |.++....
T Consensus       166 ~-~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~~  211 (304)
T 3bwc_A          166 P-DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQGE  211 (304)
T ss_dssp             C-TTCEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             c-CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            2 3379999943321          24578888999999 99988643

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.70  E-value=0.0019  Score=51.68  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=70.5

Q ss_pred             ccccchhhhhhHHHHHh--------cC-CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCCcccH-HHHHhcCCc
Q 025336           48 SFLSCGFTTGFGAAWKE--------AE-VEKGSSVAVLGLG-TVGLGAVDGARMQGAAKIIGIDKNPWKK-EKGEAFGMT  116 (254)
Q Consensus        48 a~~~~~~~ta~~~l~~~--------~~-~~~~~~vlI~G~g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~-~~~~~~g~~  116 (254)
                      ..+||+...+...+...        .+ --.|.+++|+|+| .+|..+++++...|+ +|++.+++..+. +....++..
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~  224 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLN  224 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCC
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhh
Confidence            44566555555555431        22 2368899999997 569999999999998 898887774332 222223321


Q ss_pred             -eEe---C-CCCCCCchHHHHHHHhhCCCCccEEEEcCCChhH-HHHHHHHcccCCcEEEEEccCC
Q 025336          117 -DFI---N-PDDEPNKSISELVKGITHGMGVDYCFECTGVPSL-LSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       117 -~v~---~-~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                       +..   . .+.   .++.+.++      .+|+||.++|.+.. +..  ..++++ ..++++|...
T Consensus       225 ~~~~t~~~~t~~---~~L~e~l~------~ADIVIsAtg~p~~vI~~--e~vk~G-avVIDVgi~r  278 (320)
T 1edz_A          225 KHHVEDLGEYSE---DLLKKCSL------DSDVVITGVPSENYKFPT--EYIKEG-AVCINFACTK  278 (320)
T ss_dssp             CCEEEEEEECCH---HHHHHHHH------HCSEEEECCCCTTCCBCT--TTSCTT-EEEEECSSSC
T ss_pred             cccccccccccH---hHHHHHhc------cCCEEEECCCCCcceeCH--HHcCCC-eEEEEcCCCc
Confidence             100   0 111   23333332      78999999998742 222  235777 7888888753

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.70  E-value=0.0032  Score=49.12  Aligned_cols=99  Identities=16%  Similarity=0.051  Sum_probs=63.8

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE--eCCCCCCCchHHHHHHHhhCCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF--INPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      ....++++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++.-....  .+..+   .+.  ...... ..
T Consensus        39 ~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~---~~~--~~~~~~-~~  109 (261)
T 3iv6_A           39 FLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLD---ITA--EIPKEL-AG  109 (261)
T ss_dssp             HTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECC---TTS--CCCGGG-TT
T ss_pred             HhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeee---ccc--cccccc-CC
Confidence            566788999999999874 7888888775 77 99999999999998876432211  11111   000  000001 23


Q ss_pred             CccEEEEcCCC--------hhHHHHHHHHcccCCcEEEEE
Q 025336          141 GVDYCFECTGV--------PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       141 ~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      .||+|+-+..-        ...+..+.+.+ |+ |+++..
T Consensus       110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS  147 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS  147 (261)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred             CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence            89999964321        12466677788 99 998754

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.69  E-value=0.0098  Score=46.63  Aligned_cols=95  Identities=20%  Similarity=0.200  Sum_probs=63.1

Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLG-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      .+||+...+...|....---.|.+++|+|.| .+|..++.++...|+ +|++..+.                   .   .
T Consensus       139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~-------------------t---~  195 (285)
T 3p2o_A          139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIK-------------------T---K  195 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---S
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC-------------------c---h
Confidence            3455444444445333333479999999975 589999999999999 77776332                   1   2


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          128 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++.+.+      +..|+++.++|.+..+.  -..++++ ..++.+|..
T Consensus       196 ~L~~~~------~~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~  234 (285)
T 3p2o_A          196 DLSLYT------RQADLIIVAAGCVNLLR--SDMVKEG-VIVVDVGIN  234 (285)
T ss_dssp             CHHHHH------TTCSEEEECSSCTTCBC--GGGSCTT-EEEEECCCE
T ss_pred             hHHHHh------hcCCEEEECCCCCCcCC--HHHcCCC-eEEEEeccC
Confidence            233332      27899999999764332  2456777 788888865

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.69  E-value=0.0075  Score=47.35  Aligned_cols=80  Identities=20%  Similarity=0.203  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-------------CcccHHHH----HhcCCce---EeCCCCCCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-------------NPWKKEKG----EAFGMTD---FINPDDEPNK  127 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-------------~~~~~~~~----~~~g~~~---v~~~~~~~~~  127 (254)
                      .+.++||+|+ +++|...++.+...|+ +|+++++             +.++.+.+    +..+...   ..|..+  .+
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~   86 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD--FD   86 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC--HH
Confidence            4788999986 8999999999999999 8999877             33333322    2234322   124433  22


Q ss_pred             hHHHHHHHhhC-CCCccEEEEcCCC
Q 025336          128 SISELVKGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       128 ~~~~~i~~~~~-~~~~d~v~d~~g~  151 (254)
                      ++.+.+.+... ..++|+++++.|.
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            33333332211 1279999999874

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.69  E-value=0.0035  Score=49.90  Aligned_cols=79  Identities=16%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC---c-eE--eCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM---T-DF--INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~---~-~v--~~~~~~~~~~~~~~i~~~~  137 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+.   . .+  .|..+  .+++...+.+..
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~  101 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL  101 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC--HHHHHHHHHHHH
Confidence            4678999986 9999999999999999 9999999887665432    2232   2 12  24433  122323332221


Q ss_pred             C-CCCccEEEEcCC
Q 025336          138 H-GMGVDYCFECTG  150 (254)
Q Consensus       138 ~-~~~~d~v~d~~g  150 (254)
                      . ..++|+++++.|
T Consensus       102 ~~~g~iD~lvnnAG  115 (297)
T 1xhl_A          102 AKFGKIDILVNNAG  115 (297)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence            1 127999999887

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.69  E-value=0.0034  Score=48.72  Aligned_cols=97  Identities=12%  Similarity=-0.031  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCC--------------------ceEeCCCCCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGM--------------------TDFINPDDEP  125 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~--------------------~~v~~~~~~~  125 (254)
                      ..++.+||..|+|. |..+..+++. |+ +|++++.++.-.+.+++ .+.                    ..+ ....  
T Consensus        66 ~~~~~~vLD~GCG~-G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~--  139 (252)
T 2gb4_A           66 GQSGLRVFFPLCGK-AIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI-SLYC--  139 (252)
T ss_dssp             TCCSCEEEETTCTT-CTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE-EEEE--
T ss_pred             CCCCCeEEEeCCCC-cHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce-EEEE--
Confidence            45788999999864 7777777765 99 99999999998888754 321                    000 0000  


Q ss_pred             CchHHHHHHHhhCCCCccEEEEcCC-----C---hhHHHHHHHHcccCCcEEEEEc
Q 025336          126 NKSISELVKGITHGMGVDYCFECTG-----V---PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       126 ~~~~~~~i~~~~~~~~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                       .++.+ + .......||+|++...     .   ...+..+.+.|+|+ |++++..
T Consensus       140 -~D~~~-l-~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG-G~l~l~~  191 (252)
T 2gb4_A          140 -CSIFD-L-PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE-FQYLVAV  191 (252)
T ss_dssp             -SCTTT-G-GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             -Ccccc-C-CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC-eEEEEEE
Confidence             11111 0 0111138999997432     1   12467788899999 9986543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.69  E-value=0.017  Score=45.85  Aligned_cols=88  Identities=14%  Similarity=0.192  Sum_probs=59.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.. +.       .+..+.+.      ..|+|+-|+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~------~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-AC-------ENNQKVAA------ASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-EC-------SSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-ec-------CCHHHHHh------CCCEEEEECC
Confidence            479999999999998888888898 899999998888877665542 11       12222221      5788888887


Q ss_pred             ChhHHHHHH-------HHcccCCcEEEEEcc
Q 025336          151 VPSLLSEAL-------ETTKVGKGKVIVIGV  174 (254)
Q Consensus       151 ~~~~~~~~~-------~~l~~~~G~~v~~g~  174 (254)
                      .+..++..+       ..+.++ ..++.++.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~-~~vv~~~~   99 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAG-TVIVDMSS   99 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTT-CEEEECCC
T ss_pred             CHHHHHHHHcCcchHhhcCCCC-CEEEECCC
Confidence            654444444       345555 45555443

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.68  E-value=0.012  Score=47.48  Aligned_cols=75  Identities=15%  Similarity=0.214  Sum_probs=49.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH--HHHHhcCC--c-eEe--CCCCCCCchHHHHHHHhhCCCC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK--EKGEAFGM--T-DFI--NPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~--~~~~~~g~--~-~v~--~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      +.+|||+|+ |.+|..+++.+...|+ +|+++++++++.  +.++.++.  . .++  |..+  .+.+.+.+...    +
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~----~   75 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLE--FSNIIRTIEKV----Q   75 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTC--HHHHHHHHHHH----C
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCCCC--HHHHHHHHHhc----C
Confidence            568999987 9999999998888899 999998887653  23444421  1 122  3222  12222333222    6


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+||++.+.
T Consensus        76 ~d~vih~A~~   85 (345)
T 2z1m_A           76 PDEVYNLAAQ   85 (345)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999874

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.68  E-value=0.0067  Score=48.96  Aligned_cols=72  Identities=19%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      -+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+...+...+ .|..+   .+   .+.+...  ++|+||++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d---~~---~~~~~~~--~~d~vih~   84 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPECRVAEMLD---HA---GLERALR--GLDGVIFS   84 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCEEEECCTTC---HH---HHHHHTT--TCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeEEEEecCCC---HH---HHHHHHc--CCCEEEEC
Confidence            37999987 9999999999988999 99999998776654443343322 23333   22   2333332  69999999


Q ss_pred             CCC
Q 025336          149 TGV  151 (254)
Q Consensus       149 ~g~  151 (254)
                      .+.
T Consensus        85 a~~   87 (342)
T 2x4g_A           85 AGY   87 (342)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            874

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.68  E-value=0.0055  Score=49.33  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC----------cccHHHH----HhcCCceEe---CCCCCCCchHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN----------PWKKEKG----EAFGMTDFI---NPDDEPNKSIS  130 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~----------~~~~~~~----~~~g~~~v~---~~~~~~~~~~~  130 (254)
                      .+.++||+|+ +++|...++.+...|+ +|++++++          .++.+.+    +..+....+   |..+  .+++.
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~  102 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVAD--WDQAA  102 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTS--HHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHH
Confidence            5788999986 9999999998889999 99999876          3333332    334433222   3222  12222


Q ss_pred             HHHHHhhC-CCCccEEEEcCCC
Q 025336          131 ELVKGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       131 ~~i~~~~~-~~~~d~v~d~~g~  151 (254)
                      ..+.+... ..++|+++++.|.
T Consensus       103 ~~~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          103 GLIQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            22322211 1279999999884

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.68  E-value=0.0078  Score=47.47  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      .+.++||+|+ +++|...++.+...|+ +|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            5789999986 8999999999999999 89998776

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.67  E-value=0.006  Score=48.03  Aligned_cols=80  Identities=21%  Similarity=0.332  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCC---ce-E--eCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGM---TD-F--INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~---~~-v--~~~~~~~~~~~~~~i~~~~  137 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+.   .. .  .|..+  .++....+.+..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   86 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN--EDETARAVDAVT   86 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC--HHHHHHHHHHHH
Confidence            4688999986 9999999999999999 899999988766543    23332   11 1  24333  223333333221


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . ..++|+++++.|.
T Consensus        87 ~~~g~id~lv~nAg~  101 (281)
T 3svt_A           87 AWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence            1 1279999999884

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.67  E-value=0.0044  Score=47.96  Aligned_cols=100  Identities=20%  Similarity=0.117  Sum_probs=67.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCC-ceEeCCCCCCCchHHHHHHHhhC
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGM-TDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      +.....+.++.+||-+|+|. |..+..+++.. +. ++++++.+++..+.+++... ..++..+-   .+       +..
T Consensus        25 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~-------~~~   92 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKADL---AT-------WKP   92 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTT-THHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECCT---TT-------CCC
T ss_pred             HHHhcCCCCCCEEEEecCcC-CHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECCh---hh-------cCc
Confidence            33556677889999999873 77778888775 55 89999999998888876532 12221111   11       112


Q ss_pred             CCCccEEEEcCC------ChhHHHHHHHHcccCCcEEEEEc
Q 025336          139 GMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       139 ~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ...||+|+....      ....+..+.+.++++ |+++...
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  132 (259)
T 2p35_A           93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESG-GVLAVQM  132 (259)
T ss_dssp             SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            237999996542      133567788899999 9988764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.67  E-value=0.02  Score=43.42  Aligned_cols=93  Identities=18%  Similarity=0.192  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc-cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW-KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .+.+|||.|+|.+|...++.+...|+ +|++++.... ..+.+.+.+.-..+...- .+.+          -.++|+||-
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~~i~~~~-~~~d----------L~~adLVIa   97 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLRVKRKKV-GEED----------LLNVFFIVV   97 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCEEECSCC-CGGG----------SSSCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcEEEECCC-CHhH----------hCCCCEEEE
Confidence            57889999999999999999999999 8888866542 233332333222332111 0111          137999999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +++.+. ++..+...+.. |..|-.-..
T Consensus        98 AT~d~~-~N~~I~~~ak~-gi~VNvvD~  123 (223)
T 3dfz_A           98 ATNDQA-VNKFVKQHIKN-DQLVNMASS  123 (223)
T ss_dssp             CCCCTH-HHHHHHHHSCT-TCEEEC---
T ss_pred             CCCCHH-HHHHHHHHHhC-CCEEEEeCC
Confidence            999874 45444444446 777655443

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.66  E-value=0.011  Score=46.34  Aligned_cols=71  Identities=20%  Similarity=0.262  Sum_probs=51.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHH-HHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK-GEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ....+.+++|+|+|++|.+++..+...|+++|+++.++.++.+. +++++.+ .-+  +   .       .   ...+|+
T Consensus       115 ~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~~~--~---~-------~---~~~~Di  178 (271)
T 1npy_A          115 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YIN--S---L-------E---NQQADI  178 (271)
T ss_dssp             TCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EES--C---C-------T---TCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-cch--h---h-------h---cccCCE
Confidence            34456789999999999999999999998789999999877554 4555542 111  1   0       0   127999


Q ss_pred             EEEcCCCh
Q 025336          145 CFECTGVP  152 (254)
Q Consensus       145 v~d~~g~~  152 (254)
                      +++|+...
T Consensus       179 vInaTp~g  186 (271)
T 1npy_A          179 LVNVTSIG  186 (271)
T ss_dssp             EEECSSTT
T ss_pred             EEECCCCC
Confidence            99998753

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.66  E-value=0.0086  Score=47.10  Aligned_cols=80  Identities=23%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-------------CcccHHHH----HhcCCce---EeCCCCCCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-------------NPWKKEKG----EAFGMTD---FINPDDEPNK  127 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-------------~~~~~~~~----~~~g~~~---v~~~~~~~~~  127 (254)
                      .+.++||+|+ +++|...++.+...|+ +|+++++             ++++.+.+    +..|...   ..|..+  .+
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~   90 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD--DA   90 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC--HH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HH
Confidence            5789999986 8999999999999999 8999877             34444333    2234322   224443  12


Q ss_pred             hHHHHHHHhhC-CCCccEEEEcCCC
Q 025336          128 SISELVKGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       128 ~~~~~i~~~~~-~~~~d~v~d~~g~  151 (254)
                      ++.+.+.+... ..++|+++++.|.
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            23333332211 1279999999884

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.66  E-value=0.0098  Score=47.00  Aligned_cols=94  Identities=17%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             ccchhhhhhHHHHHhcCCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCch
Q 025336           50 LSCGFTTGFGAAWKEAEVEKGSSVAVLGLG-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKS  128 (254)
Q Consensus        50 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~  128 (254)
                      +||+...+...|....---.|.+++|+|.| .+|..+++++...|+ +|++..+..                      .+
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T----------------------~~  201 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGT----------------------ST  201 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTS----------------------CH
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCC----------------------CC
Confidence            455545555555433333479999999975 589999999999999 887774421                      22


Q ss_pred             HH--HHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          129 IS--ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       129 ~~--~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +.  +.++      ..|++|.++|.+..+..  ..++++ ..++.+|..
T Consensus       202 l~l~~~~~------~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~  241 (300)
T 4a26_A          202 EDMIDYLR------TADIVIAAMGQPGYVKG--EWIKEG-AAVVDVGTT  241 (300)
T ss_dssp             HHHHHHHH------TCSEEEECSCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred             chhhhhhc------cCCEEEECCCCCCCCcH--HhcCCC-cEEEEEecc
Confidence            22  2221      78999999997643322  346777 788888864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.65  E-value=0.0037  Score=48.40  Aligned_cols=100  Identities=16%  Similarity=0.120  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHHHhhCCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      ..++.+||=+|+|+ |..++.+++.....+|++++.+++..+.+++    +|...  ++.      .+..+.........
T Consensus        78 ~~~~~~vLDiG~G~-G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~------~d~~~~~~~~~~~~  150 (249)
T 3g89_A           78 WQGPLRVLDLGTGA-GFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALW------GRAEVLAREAGHRE  150 (249)
T ss_dssp             CCSSCEEEEETCTT-TTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEE------CCHHHHTTSTTTTT
T ss_pred             cCCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEE------CcHHHhhcccccCC
Confidence            35688999998764 6666777776543499999999998888865    45432  222      22222111000123


Q ss_pred             CccEEEEcC-CC-hhHHHHHHHHcccCCcEEEEEcc
Q 025336          141 GVDYCFECT-GV-PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       141 ~~d~v~d~~-g~-~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .||+|+-.. .. +..++.+.+.++++ |+++.+-.
T Consensus       151 ~fD~I~s~a~~~~~~ll~~~~~~Lkpg-G~l~~~~g  185 (249)
T 3g89_A          151 AYARAVARAVAPLCVLSELLLPFLEVG-GAAVAMKG  185 (249)
T ss_dssp             CEEEEEEESSCCHHHHHHHHGGGEEEE-EEEEEEEC
T ss_pred             CceEEEECCcCCHHHHHHHHHHHcCCC-eEEEEEeC
Confidence            799999543 32 33566777889999 99887653

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.65  E-value=0.011  Score=49.91  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=69.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHH-cCC--CeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARM-QGA--AKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~-~g~--~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++....+|||+|+|++|+.++.++.+ .+.  ..|++++..+.+.+..+..|.... .....   .+..+.+..+..+ +
T Consensus         9 ~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vda---dnv~~~l~aLl~~-~   84 (480)
T 2ph5_A            9 KILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITP---QNYLEVIGSTLEE-N   84 (480)
T ss_dssp             CBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCT---TTHHHHTGGGCCT-T
T ss_pred             eecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccc---hhHHHHHHHHhcC-C
Confidence            34455679999999999999877764 444  268888887776666666664322 22222   5555555555444 4


Q ss_pred             ccEEEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          142 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       142 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       |+|++++-....+..+-.|++.+ -.++....
T Consensus        85 -DvVIN~s~~~~~l~Im~acleaG-v~YlDTa~  115 (480)
T 2ph5_A           85 -DFLIDVSIGISSLALIILCNQKG-ALYINAAT  115 (480)
T ss_dssp             -CEEEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred             -CEEEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence             99999776655666677777777 77777765

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.65  E-value=0.0034  Score=49.15  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      ..++++|||+|+ |++|.+.++.+...|+ +|+++++++++...    .... ..|..+  .++....+.+... ..++|
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~----~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD   83 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDVN----VSDHFKIDVTN--EEEVKEAVEKTTKKYGRID   83 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CTT----SSEEEECCTTC--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhccC----ceeEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            346889999986 8999999999999999 89999887654421    1111 234443  1233333332211 12799


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++++.|.
T Consensus        84 ~lv~nAg~   91 (269)
T 3vtz_A           84 ILVNNAGI   91 (269)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999874

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.64  E-value=0.0078  Score=46.47  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCc-eE--eCCCCCCCchHHHHHHHhhC-CCCccEE
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMT-DF--INPDDEPNKSISELVKGITH-GMGVDYC  145 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~d~v  145 (254)
                      ++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +++.. ..  .|..+  .+++...+.+... ..++|++
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD~l   78 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWCNIDIL   78 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHTSCTTTCCCCEE
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHhCCCCCEE
Confidence            5888886 8999999999989999 9999999887766543 34322 12  24443  2233333333322 1279999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        79 vnnAg~   84 (248)
T 3asu_A           79 VNNAGL   84 (248)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            998873

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.64  E-value=0.01  Score=46.71  Aligned_cols=80  Identities=18%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-CcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-NPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++ ++++.+.+    +..+... .  .|..+  .++..+.+.+... 
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  104 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD--LSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS--GGGHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            5788999986 9999999999999999 8988875 55544432    2334332 2  24443  2333333333221 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence            1279999999875

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.64  E-value=0.0057  Score=47.65  Aligned_cols=80  Identities=18%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcC-Cc-eE--eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-G-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFG-MT-DF--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g-~~-~v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.++||+|+ | ++|...++.+...|+ +|++++++.++.+.+.    +.+ .. .+  .|..+  .+++...+.+...
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS--TEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC--HHHHHHHHHHHHH
Confidence            5788999987 7 799999999889999 8999999887765542    222 11 12  24433  2233333332211


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|++|++.|.
T Consensus        98 ~~g~id~li~~Ag~  111 (266)
T 3o38_A           98 KAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCcEEEECCCc
Confidence             1279999999884

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.64  E-value=0.005  Score=48.61  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+... .  .|..+  .+++.+.+.++. ..
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH  119 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC--HHHHHHHHHHHHHhc
Confidence            3678999986 9999999998888899 898888887665543    2234322 2  24433  233333333321 12


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus       120 ~~id~li~~Ag~  131 (285)
T 2c07_A          120 KNVDILVNNAGI  131 (285)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.64  E-value=0.014  Score=44.04  Aligned_cols=74  Identities=15%  Similarity=0.030  Sum_probs=53.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|+|.|+|.+|..+++.+...|. +|+++++++++.+.+. ..+...+. |..+   .   +.+++. +-.++|+++-++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~~i~gd~~~---~---~~l~~a-~i~~ad~vi~~~   73 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKATIIHGDGSH---K---EILRDA-EVSKNDVVVILT   73 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSEEEESCTTS---H---HHHHHH-TCCTTCEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCeEEEcCCCC---H---HHHHhc-CcccCCEEEEec
Confidence            58899999999999999999999 8999999999888754 45654333 2222   2   233333 233899999999


Q ss_pred             CChh
Q 025336          150 GVPS  153 (254)
Q Consensus       150 g~~~  153 (254)
                      +...
T Consensus        74 ~~d~   77 (218)
T 3l4b_C           74 PRDE   77 (218)
T ss_dssp             SCHH
T ss_pred             CCcH
Confidence            8763

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.63  E-value=0.018  Score=46.78  Aligned_cols=90  Identities=21%  Similarity=0.287  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++...+...  |... .       .++.+.+.      ..|+|+-+
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~-~-------~~l~ell~------~sDvV~l~  234 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIY-H-------DTLDSLLG------ASDIFLIA  234 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEE-C-------SSHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeE-e-------CCHHHHHh------hCCEEEEe
Confidence            46799999999999999999999999 9999998865554332  4322 1       12322221      67888887


Q ss_pred             CCCh-hH---H-HHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVP-SL---L-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~-~~---~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +... .+   + ...+..++++ ..+|.++...
T Consensus       235 ~Plt~~T~~li~~~~l~~mk~g-ailIN~aRG~  266 (345)
T 4g2n_A          235 APGRPELKGFLDHDRIAKIPEG-AVVINISRGD  266 (345)
T ss_dssp             SCCCGGGTTCBCHHHHHHSCTT-EEEEECSCGG
T ss_pred             cCCCHHHHHHhCHHHHhhCCCC-cEEEECCCCc
Confidence            7632 11   2 4667778887 7887777644

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.63  E-value=0.0047  Score=48.02  Aligned_cols=80  Identities=16%  Similarity=0.115  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGI-DKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|...++.+...|+ +|+++ .+++++.+.+.    +.+... .  .|..+  .+++...+.+... 
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   79 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ--PAKIKEMFQQIDET   79 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5678999986 9999999999999999 88776 77776655432    234332 2  24333  1223333322211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        80 ~g~id~lv~nAg~   92 (258)
T 3oid_A           80 FGRLDVFVNNAAS   92 (258)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999873

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.63  E-value=0.0079  Score=48.87  Aligned_cols=75  Identities=21%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHh-cC---Cce-EeCCCCCCCchHHHHHHHhhCCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEA-FG---MTD-FINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~-~g---~~~-v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++.+|||+|+ |.+|..+++.+... |..+|+++++++.+.+.+++ +.   ... ..|..+   .+   .+.+...  +
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~---~l~~~~~--~   91 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD---LE---RLNYALE--G   91 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC---HH---HHHHHTT--T
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC---HH---HHHHHHh--c
Confidence            4678999986 99999999888777 86589999998877665432 22   111 124433   22   2333332  7


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+||.+++.
T Consensus        92 ~D~Vih~Aa~  101 (344)
T 2gn4_A           92 VDICIHAAAL  101 (344)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.63  E-value=0.0013  Score=51.39  Aligned_cols=97  Identities=21%  Similarity=0.273  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHc---CCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQ---GAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~---g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      +++|.+||-+|+|. |..+..+++..   |+ +|++++.+++-.+.+++    .+...-+....   .+.    .++.. 
T Consensus        68 ~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~---~D~----~~~~~-  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDI----RDIAI-  137 (261)
T ss_dssp             CCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCT----TTCCC-
T ss_pred             CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEee---ccc----ccccc-
Confidence            68999999999864 77778888864   66 89999999998888765    23221111111   111    11222 


Q ss_pred             CCccEEEEcCCC--------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          140 MGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       140 ~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ..+|+|+-...-        ...+..+.+.|+|+ |++++...
T Consensus       138 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e~  179 (261)
T 4gek_A          138 ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEK  179 (261)
T ss_dssp             CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEec
Confidence            368888754321        12577888999999 99987643

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.62  E-value=0.0065  Score=47.95  Aligned_cols=79  Identities=16%  Similarity=0.150  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce--E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD--F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~--v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+...  +  .|..+  .+.+...+.+... 
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED--MTFAEQFVAQAGKL  103 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999999889999 9999999987766542    234321  2  23333  1222222222211 


Q ss_pred             CCCccEEEEc-CC
Q 025336          139 GMGVDYCFEC-TG  150 (254)
Q Consensus       139 ~~~~d~v~d~-~g  150 (254)
                      ..++|++|++ .|
T Consensus       104 ~g~iD~li~naag  116 (286)
T 1xu9_A          104 MGGLDMLILNHIT  116 (286)
T ss_dssp             HTSCSEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            1279999988 44

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.62  E-value=0.0068  Score=48.91  Aligned_cols=76  Identities=13%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-Hh----cCC-ceEe--CCCCCCCchHHHHHHHhhCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EA----FGM-TDFI--NPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~----~g~-~~v~--~~~~~~~~~~~~~i~~~~~~  139 (254)
                      .+.+|||+|+ |.+|..+++.+...|+ +|++++++.++.... +.    .+. ..++  |..+  .+.+.+.+.+    
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~----   76 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD--ERALARIFDA----   76 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTC--HHHHHHHHHH----
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCC--HHHHHHHHhc----
Confidence            3568999986 9999999999999999 999998876543322 11    121 1222  3333  1222222222    


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.+.
T Consensus        77 ~~~d~vih~A~~   88 (341)
T 3enk_A           77 HPITAAIHFAAL   88 (341)
T ss_dssp             SCCCEEEECCCC
T ss_pred             cCCcEEEECccc
Confidence            389999999874

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.62  E-value=0.0065  Score=47.56  Aligned_cols=80  Identities=20%  Similarity=0.231  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCC--c-eE--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGM--T-DF--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~--~-~v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++.  . .+  .|..+  .+++...+.+... ..
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999987 9999999999888999 999998887665443 33322  1 12  24333  1223333322211 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|++|++.|.
T Consensus        92 ~id~li~~Ag~  102 (278)
T 2bgk_A           92 KLDIMFGNVGV  102 (278)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999998873

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.62  E-value=0.023  Score=44.68  Aligned_cols=90  Identities=21%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhCCC-CccEEEEc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAA-KIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITHGM-GVDYCFEC  148 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~-~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~-~~d~v~d~  148 (254)
                      +|.|+|+|.+|...++.++..|.. +|++.++++++.+.+++.|... .....    .+       ..  . +.|+|+.|
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~----~~-------~~--~~~aDvVila   69 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI----AK-------VE--DFSPDFVMLS   69 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCG----GG-------GG--GTCCSEEEEC
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCH----HH-------Hh--cCCCCEEEEc
Confidence            689999999999999988888852 6899999998888888887531 22111    11       11  2 68999999


Q ss_pred             CCChhH---HHHHHHHcccCCcEEEEEccC
Q 025336          149 TGVPSL---LSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       149 ~g~~~~---~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +.....   +..+...++++ ..++.++..
T Consensus        70 vp~~~~~~v~~~l~~~l~~~-~iv~~~~~~   98 (281)
T 2g5c_A           70 SPVRTFREIAKKLSYILSED-ATVTDQGSV   98 (281)
T ss_dssp             SCHHHHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred             CCHHHHHHHHHHHHhhCCCC-cEEEECCCC
Confidence            986532   23333456666 666665543

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.62  E-value=0.0041  Score=48.29  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-CcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-NPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++ ++++.+.+    +..+... +  .|..+  .+++.+.+.+... 
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 9999999998888999 8999988 66554433    2234322 2  23333  1223333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|++|++.|.
T Consensus        83 ~g~id~li~~Ag~   95 (261)
T 1gee_A           83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999873

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.62  E-value=0.013  Score=46.42  Aligned_cols=41  Identities=12%  Similarity=0.089  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CCcccHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGID-KNPWKKEKG  110 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~-~~~~~~~~~  110 (254)
                      .+.++||+|+ |++|.+.++.+...|+ +|++++ +++++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            4678999986 9999999999999999 999998 887665543

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.62  E-value=0.0079  Score=46.68  Aligned_cols=79  Identities=6%  Similarity=0.101  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH---cCCCeEEEEcCCcccHHHHH-hc-----CCce-E--eCCCCCCCchHHHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARM---QGAAKIIGIDKNPWKKEKGE-AF-----GMTD-F--INPDDEPNKSISELVKG  135 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~---~g~~~v~~v~~~~~~~~~~~-~~-----g~~~-v--~~~~~~~~~~~~~~i~~  135 (254)
                      ++.++||+|+ |++|...++.+..   .|+ +|+++++++++.+.+. ++     +... .  .|..+  .+++...+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~   81 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT--EAGVQRLLSA   81 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS--HHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC--HHHHHHHHHH
Confidence            3567899986 9999998887776   899 9999999887665442 22     3221 1  24443  2333334444


Q ss_pred             hhC---CCCcc--EEEEcCC
Q 025336          136 ITH---GMGVD--YCFECTG  150 (254)
Q Consensus       136 ~~~---~~~~d--~v~d~~g  150 (254)
                      ...   ..++|  +++++.|
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCC
T ss_pred             HHhccccccCCccEEEECCc
Confidence            322   22678  9999876

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.62  E-value=0.0081  Score=47.44  Aligned_cols=95  Identities=25%  Similarity=0.271  Sum_probs=63.5

Q ss_pred             cccchhhhhhHHHHHhcCC-CCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC
Q 025336           49 FLSCGFTTGFGAAWKEAEV-EKGSSVAVLGLG-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~-~~~~~vlI~G~g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                      .+||+.......| ++..+ -.|.+++|+|.| .+|.-+++++...|+ +|++..+.                   .   
T Consensus       144 ~~PcTp~gi~~ll-~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t---  199 (301)
T 1a4i_A          144 FIPCTPKGCLELI-KETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSK-------------------T---  199 (301)
T ss_dssp             CCCHHHHHHHHHH-HTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---
T ss_pred             ccCchHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECC-------------------c---
Confidence            3454444433444 33333 378999999987 689999999999999 88776321                   1   


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .++.+.+      +..|++|.++|.+..+.  -..++++ ..++++|...
T Consensus       200 ~~L~~~~------~~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~~  240 (301)
T 1a4i_A          200 AHLDEEV------NKGDILVVATGQPEMVK--GEWIKPG-AIVIDCGINY  240 (301)
T ss_dssp             SSHHHHH------TTCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCBC
T ss_pred             ccHHHHh------ccCCEEEECCCCcccCC--HHHcCCC-cEEEEccCCC
Confidence            3344433      27899999999874322  2346787 8888988753

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.62  E-value=0.012  Score=46.54  Aligned_cols=82  Identities=11%  Similarity=0.031  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-ccHHHHH-----hcCCce-Ee--CCCCCC--CchHHHHHHHh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-WKKEKGE-----AFGMTD-FI--NPDDEP--NKSISELVKGI  136 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~~~~-----~~g~~~-v~--~~~~~~--~~~~~~~i~~~  136 (254)
                      ++.++||+|+ |++|.++++.+...|+ +|+++++++ ++.+.+.     ..+... ++  |..+..  .+++...+.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            4678999986 9999999999888999 899998887 5554332     234322 22  222100  12222222222


Q ss_pred             hC-CCCccEEEEcCCC
Q 025336          137 TH-GMGVDYCFECTGV  151 (254)
Q Consensus       137 ~~-~~~~d~v~d~~g~  151 (254)
                      .. ..++|++|++.|.
T Consensus       101 ~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          101 FRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence            11 1279999998873

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.61  E-value=0.0096  Score=50.84  Aligned_cols=83  Identities=22%  Similarity=0.278  Sum_probs=54.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc---H----HHHHhcCCce-E--eCCCCCCCchHHHHHHH
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK---K----EKGEAFGMTD-F--INPDDEPNKSISELVKG  135 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~---~----~~~~~~g~~~-v--~~~~~~~~~~~~~~i~~  135 (254)
                      ++++.++||+|+ |++|..+++.+...|+.+|+.++++...   .    +.++..|... +  .|..+  .+.+...+.+
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d--~~~v~~~~~~  300 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD--RESVRELLGG  300 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCC--HHHHHHHHHH
Confidence            567889999986 9999999988888898568888887642   1    2234456532 2  23333  2334444444


Q ss_pred             hhCCCCccEEEEcCCC
Q 025336          136 ITHGMGVDYCFECTGV  151 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~  151 (254)
                      +....++|.+|++.|.
T Consensus       301 i~~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          301 IGDDVPLSAVFHAAAT  316 (486)
T ss_dssp             SCTTSCEEEEEECCCC
T ss_pred             HHhcCCCcEEEECCcc
Confidence            4223378999999884

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.61  E-value=0.0092  Score=48.83  Aligned_cols=73  Identities=16%  Similarity=0.148  Sum_probs=49.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhc-CCceE-eCCC-CCCCchHHHHHHHhhCCCCccE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAF-GMTDF-INPD-DEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~-g~~~v-~~~~-~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ..+|||+|+ |.+|..+++.+... |. +|+++++++++...+... +...+ .|.. +   .+....+.+     ++|+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d---~~~~~~~~~-----~~d~   94 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVKHERMHFFEGDITIN---KEWVEYHVK-----KCDV   94 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGGSTTEEEEECCTTTC---HHHHHHHHH-----HCSE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhccCCCeEEEeCccCCC---HHHHHHHhc-----cCCE
Confidence            468999986 99999999888877 88 999999988766554332 22222 2333 2   333332222     7999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ||++.+.
T Consensus        95 Vih~A~~  101 (372)
T 3slg_A           95 ILPLVAI  101 (372)
T ss_dssp             EEECBCC
T ss_pred             EEEcCcc
Confidence            9998874

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.61  E-value=0.0035  Score=49.25  Aligned_cols=80  Identities=13%  Similarity=0.116  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hc---C---Cc-eE--eCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AF---G---MT-DF--INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~---g---~~-~v--~~~~~~~~~~~~~~i~~~~  137 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++   .   .. ..  .|..+  .+++...+.+..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~   81 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   81 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC--HHHHHHHHHHHH
Confidence            4678999986 9999999998888999 9999999887665442 22   1   11 11  24433  122323232221


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . ..++|+++++.|.
T Consensus        82 ~~~g~id~lv~~Ag~   96 (278)
T 1spx_A           82 GKFGKLDILVNNAGA   96 (278)
T ss_dssp             HHHSCCCEEEECCC-
T ss_pred             HHcCCCCEEEECCCC
Confidence            1 1279999999874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.61  E-value=0.0079  Score=47.07  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-ccHHHH----HhcCCce-Ee--CCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-WKKEKG----EAFGMTD-FI--NPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|++++++. +..+.+    ++.+... ++  |..+  .++..+.+.++.. 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~  104 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAAS--ESDFIEAIQTIVQS  104 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHh
Confidence            4788999986 9999999998889999 899988843 333332    3344322 22  3333  2333333333221 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus       105 ~g~id~li~nAg~  117 (271)
T 4iin_A          105 DGGLSYLVNNAGV  117 (271)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1279999999884

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.61  E-value=0.012  Score=49.68  Aligned_cols=103  Identities=21%  Similarity=0.261  Sum_probs=65.7

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ...++++++||=.|+|+ |..+++++..++ ..+|++++.++++.+.+++    +|...+....    .+........ .
T Consensus       100 ~L~~~~g~~VLDlcaGp-Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~----~Da~~l~~~~-~  173 (456)
T 3m4x_A          100 AAAAKPGEKVLDLCAAP-GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN----HAPAELVPHF-S  173 (456)
T ss_dssp             HHCCCTTCEEEESSCTT-CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC----CCHHHHHHHH-T
T ss_pred             HcCCCCCCEEEEECCCc-CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe----CCHHHhhhhc-c
Confidence            44578899999887654 555667776543 3489999999998887754    5654332111    2222221112 3


Q ss_pred             CCCccEEE-E--cCCCh-------------------------hHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCF-E--CTGVP-------------------------SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      + .||.|+ |  |+|..                         ..+..+++.++++ |+++....
T Consensus       174 ~-~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsTC  235 (456)
T 3m4x_A          174 G-FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK-GQLIYSTC  235 (456)
T ss_dssp             T-CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE-EEEEEEES
T ss_pred             c-cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            3 799998 4  44431                         3467788899999 99886543

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.61  E-value=0.0067  Score=47.02  Aligned_cols=75  Identities=20%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhh-CCCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGIT-HGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~-~~~~~d~v  145 (254)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.     ... ..|..+  .+++...+.+.. ...++|++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~Dl~d--~~~v~~~~~~~~~~~g~iD~l   91 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG-----FLAVKCDITD--TEQVEQAYKEIEETHGPVEVL   91 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----SEEEECCTTS--HHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc-----ceEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4678999987 9999999999999999 89999888765432     111 224443  123333333321 11279999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        92 v~nAg~   97 (253)
T 2nm0_A           92 IANAGV   97 (253)
T ss_dssp             EEECSC
T ss_pred             EECCCC
Confidence            998874

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.61  E-value=0.012  Score=44.24  Aligned_cols=100  Identities=20%  Similarity=0.198  Sum_probs=66.5

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHH-HhhCCCCcc
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVK-GITHGMGVD  143 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~-~~~~~~~~d  143 (254)
                      ....++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++.+...++.      .+...... ....+..||
T Consensus        48 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGE-GWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHL------ASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             HHHTCCSEEEEETCTT-CHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEE------CCHHHHHTTCSCCCCCEE
T ss_pred             hhcCCCCEEEEeCCCC-CHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccch------hhHHhhcccccccCCCcc
Confidence            3445678999998764 6666666666 88 9999999999999888774333332      12222111 112333599


Q ss_pred             EEEEcCC-----ChhHHHHHHHHcccCCcEEEEEcc
Q 025336          144 YCFECTG-----VPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       144 ~v~d~~g-----~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +|+....     ....+..+.+.|+++ |+++....
T Consensus       119 ~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~~  153 (227)
T 3e8s_A          119 LICANFALLHQDIIELLSAMRTLLVPG-GALVIQTL  153 (227)
T ss_dssp             EEEEESCCCSSCCHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             EEEECchhhhhhHHHHHHHHHHHhCCC-eEEEEEec
Confidence            9986432     234688889999999 99887654

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.60  E-value=0.0059  Score=47.64  Aligned_cols=76  Identities=13%  Similarity=0.081  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhC-CCCccEEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH-GMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  146 (254)
                      +|+++||+|+ +++|++.++.+...|+ +|+.+++++++. ..+.+  ....|..+  .++....+.+... -.++|+++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~--~~~~Dv~~--~~~v~~~~~~~~~~~G~iDilV   83 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPEG-LPEEL--FVEADLTT--KEGCAIVAEATRQRLGGVDVIV   83 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCTT-SCTTT--EEECCTTS--HHHHHHHHHHHHHHTSSCSEEE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchhC-CCcEE--EEEcCCCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            5889999986 8999999999999999 999998875421 01111  11223333  1233333332221 12799999


Q ss_pred             EcCC
Q 025336          147 ECTG  150 (254)
Q Consensus       147 d~~g  150 (254)
                      ++.|
T Consensus        84 nnAG   87 (261)
T 4h15_A           84 HMLG   87 (261)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9887

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.59  E-value=0.0089  Score=46.14  Aligned_cols=76  Identities=18%  Similarity=0.315  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhC-CCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v  145 (254)
                      ++.++||+|+ |++|...++.+...|+ +|++++++++.    ++.+... ..|..+  .+++.+.+.+... ..++|++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~g~id~l   78 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD--AAQVAQVCQRLLAETERLDAL   78 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC--HHHHHHHHHHHHHHCSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4678999986 9999999999999999 99999887653    2233221 224443  2333333333211 1279999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        79 v~~Ag~   84 (250)
T 2fwm_X           79 VNAAGI   84 (250)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999874

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.59  E-value=0.0086  Score=46.69  Aligned_cols=93  Identities=14%  Similarity=0.145  Sum_probs=64.2

Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLG-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      .+||+.......|....  -.|.+++|+|.| .+|..+++++...|+ +|++..+.                   .   .
T Consensus       131 ~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~-------------------t---~  185 (276)
T 3ngx_A          131 LVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK-------------------T---K  185 (276)
T ss_dssp             SCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---S
T ss_pred             CCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC-------------------c---c
Confidence            34555555555554444  679999999975 689999999999999 88776331                   1   3


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          128 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++.+.++      ..|++|.++|.+..+..  ..++++ ..++.+|..
T Consensus       186 ~L~~~~~------~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~  224 (276)
T 3ngx_A          186 DIGSMTR------SSKIVVVAVGRPGFLNR--EMVTPG-SVVIDVGIN  224 (276)
T ss_dssp             CHHHHHH------HSSEEEECSSCTTCBCG--GGCCTT-CEEEECCCE
T ss_pred             cHHHhhc------cCCEEEECCCCCccccH--hhccCC-cEEEEeccC
Confidence            3444433      67999999987643322  346777 788888764

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.58  E-value=0.012  Score=43.61  Aligned_cols=62  Identities=21%  Similarity=0.362  Sum_probs=44.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      ++||+|+ |.+|...++.+. .|+ +|++++++++          ....|..+  .+.+.+.+.+.  + ++|++|++.|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~--~~~~~~~~~~~--~-~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN--IDSIKKMYEQV--G-KVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC--HHHHHHHHHHH--C-CEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC--HHHHHHHHHHh--C-CCCEEEECCC
Confidence            6999986 999999998888 899 8999988764          12234443  13333334443  2 7999999987

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.58  E-value=0.016  Score=49.00  Aligned_cols=92  Identities=14%  Similarity=0.066  Sum_probs=55.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceE--eCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDF--INPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v--~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +.+|+|+|+|.+|...++.+...|. +|++++++.++.+.+. .++....  ++..+   .+   .+.+...  ++|+|+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d---~~---~l~~~l~--~~DvVI   73 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND---DA---ALDAEVA--KHDLVI   73 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC---HH---HHHHHHT--TSSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC---HH---HHHHHHc--CCcEEE
Confidence            4689999999999999988888898 8999988877665443 2332112  23332   21   2222222  799999


Q ss_pred             EcCCChhHHHHHHHHcccCCcEEEE
Q 025336          147 ECTGVPSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~~~G~~v~  171 (254)
                      +|++..........++.++ ..++.
T Consensus        74 n~a~~~~~~~i~~a~l~~g-~~vvd   97 (450)
T 1ff9_A           74 SLIPYTFHATVIKSAIRQK-KHVVT   97 (450)
T ss_dssp             ECCC--CHHHHHHHHHHHT-CEEEE
T ss_pred             ECCccccchHHHHHHHhCC-CeEEE
Confidence            9998632222333445554 44443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.57  E-value=0.0074  Score=48.47  Aligned_cols=80  Identities=20%  Similarity=0.182  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC------------cccHHH----HHhcCCceE---eCCCCCCCch
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN------------PWKKEK----GEAFGMTDF---INPDDEPNKS  128 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~------------~~~~~~----~~~~g~~~v---~~~~~~~~~~  128 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|++++++            .++.+.    +++.+....   .|..+  .++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~  121 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD--LAS  121 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHH
Confidence            5788999986 9999999999999999 89988765            222222    223443322   24433  223


Q ss_pred             HHHHHHHhhC-CCCccEEEEcCCC
Q 025336          129 ISELVKGITH-GMGVDYCFECTGV  151 (254)
Q Consensus       129 ~~~~i~~~~~-~~~~d~v~d~~g~  151 (254)
                      +...+.+... ..++|+++++.|.
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            3333332211 1279999999884

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.57  E-value=0.01  Score=48.39  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .+.+|+|+|+|++|..++..+...|.+++..+|.+.
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            367899999999999999999999999999998764

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.57  E-value=0.015  Score=45.64  Aligned_cols=96  Identities=19%  Similarity=0.211  Sum_probs=64.2

Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      .+||+...+...|....---.|.+++|+|. +.+|..+++++...|+ +|++..+.                   .   .
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~-------------------T---~  196 (286)
T 4a5o_A          140 LRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRF-------------------T---R  196 (286)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTT-------------------C---S
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------C---c
Confidence            345544444555533332347999999997 5699999999999999 88776321                   1   2


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          128 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ++.+.++      ..|+++.++|.+..+.  -..++++ ..++.+|...
T Consensus       197 ~L~~~~~------~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~~  236 (286)
T 4a5o_A          197 DLADHVS------RADLVVVAAGKPGLVK--GEWIKEG-AIVIDVGINR  236 (286)
T ss_dssp             CHHHHHH------TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCSCS
T ss_pred             CHHHHhc------cCCEEEECCCCCCCCC--HHHcCCC-eEEEEecccc
Confidence            3433332      7899999999764432  2456887 8888888654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.56  E-value=0.0097  Score=47.23  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=57.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-------ccHHHHH---hcCCceE-eCCCCCCCchHHHHHHHhh
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-------WKKEKGE---AFGMTDF-INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-------~~~~~~~---~~g~~~v-~~~~~~~~~~~~~~i~~~~  137 (254)
                      +.+|||+|+ |.+|...++.+...|. +|+++++++       ++.+.++   ..+...+ .|..+   .+   .+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~---~l~~~~   74 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND---HE---TLVKAI   74 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC---HH---HHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC---HH---HHHHHH
Confidence            357999997 9999999998888898 899988876       4443332   3454432 24443   32   233322


Q ss_pred             CCCCccEEEEcCCCh--hHHHHHHHHcccC--CcEEE
Q 025336          138 HGMGVDYCFECTGVP--SLLSEALETTKVG--KGKVI  170 (254)
Q Consensus       138 ~~~~~d~v~d~~g~~--~~~~~~~~~l~~~--~G~~v  170 (254)
                      .  ++|.||++++..  .....+++.+...  -.+++
T Consensus        75 ~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           75 K--QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             T--TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             h--CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            2  799999998852  1233444544433  14665

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.56  E-value=0.005  Score=49.65  Aligned_cols=75  Identities=19%  Similarity=0.108  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc-----CC--ceE--eCCCCCCCchHHHHHHHhh
Q 025336           68 EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF-----GM--TDF--INPDDEPNKSISELVKGIT  137 (254)
Q Consensus        68 ~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~-----g~--~~v--~~~~~~~~~~~~~~i~~~~  137 (254)
                      .++.+|||+|+ |.+|..+++.+...|. +|++++++.++.+.+...     +.  ..+  .|..+   .+.   +.+..
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d---~~~---~~~~~   81 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK---QGA---YDEVI   81 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS---TTT---TTTTT
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC---hHH---HHHHH
Confidence            35678999987 9999999998888899 999998987765544321     21  212  23332   221   22221


Q ss_pred             CCCCccEEEEcCCC
Q 025336          138 HGMGVDYCFECTGV  151 (254)
Q Consensus       138 ~~~~~d~v~d~~g~  151 (254)
                        .++|+||++.+.
T Consensus        82 --~~~d~vih~A~~   93 (342)
T 1y1p_A           82 --KGAAGVAHIASV   93 (342)
T ss_dssp             --TTCSEEEECCCC
T ss_pred             --cCCCEEEEeCCC
Confidence              179999999874

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.55  E-value=0.02  Score=45.33  Aligned_cols=73  Identities=25%  Similarity=0.231  Sum_probs=49.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCCcccHH--HHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQG-AAKIIGIDKNPWKKE--KGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~--~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ..+|||+|+ |.+|..+++.+...| . +|+++++++++..  .+...+...+ .|..+   .+.   +.+...  ++|.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d---~~~---l~~~~~--~~d~   75 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQDD---QVI---MELALN--GAYA   75 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCEEEECCTTC---HHH---HHHHHT--TCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCEEEEecCCC---HHH---HHHHHh--cCCE
Confidence            468999997 999999998888778 7 8999989876642  2334455433 24433   322   222222  6999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      +|.+.+.
T Consensus        76 vi~~a~~   82 (299)
T 2wm3_A           76 TFIVTNY   82 (299)
T ss_dssp             EEECCCH
T ss_pred             EEEeCCC
Confidence            9999873

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.55  E-value=0.0063  Score=46.73  Aligned_cols=80  Identities=18%  Similarity=0.166  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCCcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGI-DKNPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++ .+++++.+.+    +..+... .  .|..+  .+++...+.+... 
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN--PEDVENMVKTAMDA   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS--HHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHh
Confidence            3678999986 9999999999999999 88888 5666554433    2334322 2  24333  1223333322211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|++|++.|.
T Consensus        81 ~~~~d~vi~~Ag~   93 (247)
T 2hq1_A           81 FGRIDILVNNAGI   93 (247)
T ss_dssp             HSCCCEEEECC--
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999874

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.54  E-value=0.00075  Score=52.35  Aligned_cols=97  Identities=22%  Similarity=0.163  Sum_probs=67.2

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHHHHhh
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ..++++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|..   .++..+-   .++     .. 
T Consensus        42 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~-----~~-  110 (257)
T 3f4k_A           42 NELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM---DNL-----PF-  110 (257)
T ss_dssp             CCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC-----SS-
T ss_pred             hcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhC-----CC-
Confidence            3678889999999875 8888999998887 99999999988887754    3321   1221111   111     01 


Q ss_pred             CCCCccEEEEcC-----CChhHHHHHHHHcccCCcEEEEEc
Q 025336          138 HGMGVDYCFECT-----GVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       138 ~~~~~d~v~d~~-----g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ....||+|+...     +....+..+.+.|+|+ |+++...
T Consensus       111 ~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~  150 (257)
T 3f4k_A          111 QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKG-GFIAVSE  150 (257)
T ss_dssp             CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred             CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCC-cEEEEEE
Confidence            223799997432     2234678888899999 9988765

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.54  E-value=0.0033  Score=49.52  Aligned_cols=95  Identities=14%  Similarity=0.016  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC------C--c--eEeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG------M--T--DFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g------~--~--~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ...+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-      .  .  .++.      .|..+.+.+.  
T Consensus        75 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~------~D~~~~l~~~--  145 (275)
T 1iy9_A           75 NPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV------DDGFMHIAKS--  145 (275)
T ss_dssp             SCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE------SCSHHHHHTC--
T ss_pred             CCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE------CcHHHHHhhC--
Confidence            467999998764 666777777767569999999998888887631      1  1  1222      2333334332  


Q ss_pred             CCCccEEEEcCCC----------hhHHHHHHHHcccCCcEEEEEc
Q 025336          139 GMGVDYCFECTGV----------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       139 ~~~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ...||+|+-....          ...+..+.+.|+++ |.++...
T Consensus       146 ~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg-G~lv~~~  189 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (275)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            2479999953321          34788999999999 9988764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.54  E-value=0.0091  Score=47.09  Aligned_cols=70  Identities=14%  Similarity=0.084  Sum_probs=47.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|.|+|+|.+|...+..+.. |. +|++.++++++.+.+.+.|... .+ .    .+.       .  ...|+|+.|+..
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~~~-~~-~----~~~-------~--~~~D~vi~~v~~   65 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFGSE-AV-P----LER-------V--AEARVIFTCLPT   65 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHCCE-EC-C----GGG-------G--GGCSEEEECCSS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCCcc-cC-H----HHH-------H--hCCCEEEEeCCC
Confidence            58899999999988877777 98 8999999988887776555432 11 1    111       1  156777777776


Q ss_pred             hhHHHHH
Q 025336          152 PSLLSEA  158 (254)
Q Consensus       152 ~~~~~~~  158 (254)
                      +..+...
T Consensus        66 ~~~~~~v   72 (289)
T 2cvz_A           66 TREVYEV   72 (289)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            5334433

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.53  E-value=0.011  Score=46.52  Aligned_cols=90  Identities=20%  Similarity=0.153  Sum_probs=62.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      .+|||+|+|.+|..+++.+...|. +|+++++++++.+.+...+...+. |..+     +.        -.++|+||.+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d-----~~--------~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGEE-----PS--------LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSSSC-----CC--------CTTCCEEEECC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEecccc-----cc--------cCCCCEEEECC
Confidence            579999999999999999998899 999999999888777766654332 3322     11        23899999998


Q ss_pred             CCh----hHHHHHHHHccc--C-CcEEEEEcc
Q 025336          150 GVP----SLLSEALETTKV--G-KGKVIVIGV  174 (254)
Q Consensus       150 g~~----~~~~~~~~~l~~--~-~G~~v~~g~  174 (254)
                      +..    .....+++.++.  . -.+++.+++
T Consensus        72 ~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           72 APDSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             CCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             CccccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            742    123444444433  1 147777664

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.53  E-value=0.019  Score=46.46  Aligned_cols=89  Identities=20%  Similarity=0.129  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.++.  +++. +.    +.    .++.+.+.      ..|+|+.+
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~----~~----~~l~ell~------~aDvV~l~  206 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--LEKK-GY----YV----DSLDDLYK------QADVISLH  206 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHT-TC----BC----SCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHhh-Ce----ec----CCHHHHHh------hCCEEEEc
Confidence            46789999999999999999999999 999998887654  2332 22    11    12322221      67899988


Q ss_pred             CCChhH----H-HHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPSL----L-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~~----~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +...+.    + ...+..++++ +.++.++...
T Consensus       207 ~p~~~~t~~li~~~~l~~mk~g-a~lIn~arg~  238 (333)
T 1j4a_A          207 VPDVPANVHMINDESIAKMKQD-VVIVNVSRGP  238 (333)
T ss_dssp             SCCCGGGTTCBSHHHHHHSCTT-EEEEECSCGG
T ss_pred             CCCcHHHHHHHhHHHHhhCCCC-cEEEECCCCc
Confidence            874321    2 3567788888 8888887653

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.53  E-value=0.01  Score=46.29  Aligned_cols=75  Identities=12%  Similarity=0.126  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhC-CCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v  145 (254)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++     ...... ..|..+  .+++...+.+... ..++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g~iD~l   78 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTN--PDQVKASIDHIFKEYGSISVL   78 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTC--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4678999986 9999999999999999 99999888665     111111 224443  1223333332211 1279999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        79 v~~Ag~   84 (264)
T 2dtx_A           79 VNNAGI   84 (264)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.53  E-value=0.0047  Score=48.81  Aligned_cols=98  Identities=11%  Similarity=0.082  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC--------c--eEeCCCCCCCchHHHHHHHh
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM--------T--DFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~--------~--~v~~~~~~~~~~~~~~i~~~  136 (254)
                      ..++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-.        .  .++.      .+..+.+...
T Consensus        76 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~l~~~  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI------EDASKFLENV  148 (283)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE------SCHHHHHHHC
T ss_pred             CCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE------CChHHHHHhC
Confidence            34568999998764 6666777776554599999999998888876321        1  1221      3344444332


Q ss_pred             hCCCCccEEEE-cCC---C------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          137 THGMGVDYCFE-CTG---V------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       137 ~~~~~~d~v~d-~~g---~------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                        ...||+|+- ...   .      ...+..+.+.|+++ |.++....
T Consensus       149 --~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~~  193 (283)
T 2i7c_A          149 --TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQCE  193 (283)
T ss_dssp             --CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             --CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEECC
Confidence              338999984 321   1      24677888999999 99887643

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.53  E-value=0.021  Score=45.20  Aligned_cols=74  Identities=19%  Similarity=0.158  Sum_probs=51.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|... .       .+..+.+.      ..|+||-|+..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~-~-------~~~~~~~~------~~Dvvi~~vp~   66 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQV-V-------SSPADVAE------KADRIITMLPT   66 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCEE-C-------SSHHHHHH------HCSEEEECCSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee-c-------CCHHHHHh------cCCEEEEeCCC
Confidence            48899999999999888888898 8999999988888877766421 1       11222221      46788887765


Q ss_pred             hhHHHHHHH
Q 025336          152 PSLLSEALE  160 (254)
Q Consensus       152 ~~~~~~~~~  160 (254)
                      +..++..+.
T Consensus        67 ~~~~~~v~~   75 (296)
T 2gf2_A           67 SINAIEAYS   75 (296)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            444455443

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.53  E-value=0.0084  Score=47.47  Aligned_cols=87  Identities=15%  Similarity=0.276  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|..+++.++..|+ +|++.++++++.+.     .. ..       .++.+.+.      ..|+|+-+
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~-----~~-~~-------~~l~ell~------~aDiV~l~  180 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQNV-----DV-IS-------ESPADLFR------QSDFVLIA  180 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCCTTC-----SE-EC-------SSHHHHHH------HCSEEEEC
T ss_pred             ecchheeeccCchhHHHHHHHHhhCc-EEEEEecccccccc-----cc-cc-------CChHHHhh------ccCeEEEE
Confidence            47899999999999999999999999 99999888755432     11 10       22322221      56777777


Q ss_pred             CCChhH----H-HHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPSL----L-SEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~~----~-~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +...+.    + ...+..++++ ..++.++...
T Consensus       181 ~P~t~~t~~li~~~~l~~mk~g-ailIN~aRG~  212 (290)
T 3gvx_A          181 IPLTDKTRGMVNSRLLANARKN-LTIVNVARAD  212 (290)
T ss_dssp             CCCCTTTTTCBSHHHHTTCCTT-CEEEECSCGG
T ss_pred             eeccccchhhhhHHHHhhhhcC-ceEEEeehhc
Confidence            653111    1 4556677777 7777776543

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.53  E-value=0.012  Score=50.23  Aligned_cols=79  Identities=22%  Similarity=0.285  Sum_probs=51.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc---cH----HHHHhcCCceE---eCCCCCCCchHHHHHHHhhCC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW---KK----EKGEAFGMTDF---INPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~---~~----~~~~~~g~~~v---~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      .++||+|+ |++|...++.+...|+.+|+.+.++..   +.    +.+++.|....   .|..+  .+.+...+.++...
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd--~~~v~~~~~~i~~~  317 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAAD--REALAALLAELPED  317 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHTCCTT
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHh
Confidence            89999986 999999998888889877888877632   22    22345565432   23333  23344444444333


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|.+|++.|.
T Consensus       318 g~ld~vVh~AGv  329 (496)
T 3mje_A          318 APLTAVFHSAGV  329 (496)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            479999999874

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.52  E-value=0.036  Score=45.13  Aligned_cols=98  Identities=16%  Similarity=0.153  Sum_probs=59.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH--HHHHhc-CCceE-eC-CCCCCCchHHHHHHHhhCCCCcc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK--EKGEAF-GMTDF-IN-PDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~--~~~~~~-g~~~v-~~-~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      +.+|||+|+ |.+|..+++.+...|. +|+++++++++.  +.+... +...+ .| ..+   .+.   +.+...  ++|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d---~~~---l~~~~~--~~d   75 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNN---VPL---MDTLFE--GAH   75 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTC---HHH---HHHHHT--TCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCChhhHHHHhhcCCcEEEECCccCC---HHH---HHHHHh--cCC
Confidence            467999997 9999999988888898 899988887765  333332 32222 23 333   322   222222  689


Q ss_pred             EEEEcCCCh-----hHHHHHHHHcccC--CcEEEEEccCC
Q 025336          144 YCFECTGVP-----SLLSEALETTKVG--KGKVIVIGVGV  176 (254)
Q Consensus       144 ~v~d~~g~~-----~~~~~~~~~l~~~--~G~~v~~g~~~  176 (254)
                      .||.+.+..     .....+++.+...  -+++|.+++..
T Consensus        76 ~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           76 LAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            999776542     1123444444433  14888887653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.51  E-value=0.0025  Score=48.43  Aligned_cols=97  Identities=16%  Similarity=0.116  Sum_probs=66.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC-ceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ++++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++... ..++..+-   .+.   + .......||+|
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~---~-~~~~~~~fD~v  115 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNG---KGE---L-PAGLGAPFGLI  115 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCS---CSS---C-CTTCCCCEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcch---hhc---c-CCcCCCCEEEE
Confidence            36788999999764 6777777776 77 99999999998888877532 12221111   000   0 01102389999


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +........+..+.+.|+|+ |+++..+.
T Consensus       116 ~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  143 (226)
T 3m33_A          116 VSRRGPTSVILRLPELAAPD-AHFLYVGP  143 (226)
T ss_dssp             EEESCCSGGGGGHHHHEEEE-EEEEEEES
T ss_pred             EeCCCHHHHHHHHHHHcCCC-cEEEEeCC
Confidence            98766666788999999999 99985443

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.50  E-value=0.011  Score=50.91  Aligned_cols=79  Identities=15%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc---H----HHHHhcCCce-E--eCCCCCCCchHHHHHHH
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK---K----EKGEAFGMTD-F--INPDDEPNKSISELVKG  135 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~---~----~~~~~~g~~~-v--~~~~~~~~~~~~~~i~~  135 (254)
                      ++++.++||+|+ |++|..+++.+...|+.+|+.++++...   .    +.++..|... +  .|..+  .+.+...+.+
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd--~~~v~~~~~~  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE--RDALAALVTA  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC--HHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC--HHHHHHHHhc
Confidence            467889999986 9999999988888898668888887532   2    2233455432 2  23333  1223333332


Q ss_pred             hhCCCCccEEEEcCCC
Q 025336          136 ITHGMGVDYCFECTGV  151 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~  151 (254)
                          .++|.||++.|.
T Consensus       334 ----~~ld~VVh~AGv  345 (511)
T 2z5l_A          334 ----YPPNAVFHTAGI  345 (511)
T ss_dssp             ----SCCSEEEECCCC
T ss_pred             ----CCCcEEEECCcc
Confidence                379999999874

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.50  E-value=0.0095  Score=45.51  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAA-KIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~-~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +.+|||+|+ |.+|...++.+...|+. +|+++++++++.+....-+...+ .|..+   .+   .+.+...  ++|++|
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d---~~---~~~~~~~--~~d~vi   89 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK---LD---DYASAFQ--GHDVGF   89 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG---GG---GGGGGGS--SCSEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCC---HH---HHHHHhc--CCCEEE
Confidence            578999986 99999999888888863 68888888765433221122211 22222   11   2222222  799999


Q ss_pred             EcCCChh--------------HHHHHHHHcccC-CcEEEEEccCCC
Q 025336          147 ECTGVPS--------------LLSEALETTKVG-KGKVIVIGVGVD  177 (254)
Q Consensus       147 d~~g~~~--------------~~~~~~~~l~~~-~G~~v~~g~~~~  177 (254)
                      ++.|...              ....+++.+... .++++.+++...
T Consensus        90 ~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~  135 (242)
T 2bka_A           90 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA  135 (242)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             ECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcC
Confidence            9998531              112333344332 158888877543

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.50  E-value=0.009  Score=46.75  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-CcccHHHH----HhcCCce-E--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK-NPWKKEKG----EAFGMTD-F--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~-~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|++.++ ++++.+.+    +..+... .  .|..+  .+++...+.++.. 
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ--ESEVEALFAAVIER  103 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4778999986 9999999999999999 8888777 44444433    2334322 2  24443  1223332332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus       104 ~g~id~lv~nAg~  116 (269)
T 4dmm_A          104 WGRLDVLVNNAGI  116 (269)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999874

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.49  E-value=0.016  Score=47.23  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH--cCCCeEEEEcCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARM--QGAAKIIGIDKNPW  105 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~--~g~~~v~~v~~~~~  105 (254)
                      .+.+|||+|+ |.+|..+++.+..  .|+ +|++++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCc
Confidence            4678999987 9999999988887  899 9999988654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.012  Score=46.49  Aligned_cols=81  Identities=12%  Similarity=0.112  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC--CeEEEEcCCcccHHHHHh-c-----CCce---EeCCCCCCCchHHHHHHHh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGA--AKIIGIDKNPWKKEKGEA-F-----GMTD---FINPDDEPNKSISELVKGI  136 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~--~~v~~v~~~~~~~~~~~~-~-----g~~~---v~~~~~~~~~~~~~~i~~~  136 (254)
                      .+.++||+|+ |++|...++.+...|+  .+|+.++++.++.+.+.+ +     +...   ..|..+  .+++...+.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~  109 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ--AEKIKPFIENL  109 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC--GGGHHHHHHTS
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHH
Confidence            4688999986 8999998877665554  278888898877665432 1     3221   124443  24444444443


Q ss_pred             hC-CCCccEEEEcCCC
Q 025336          137 TH-GMGVDYCFECTGV  151 (254)
Q Consensus       137 ~~-~~~~d~v~d~~g~  151 (254)
                      .. ..++|+++++.|.
T Consensus       110 ~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          110 PQEFKDIDILVNNAGK  125 (287)
T ss_dssp             CGGGCSCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            22 1279999999873

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.49  E-value=0.016  Score=46.68  Aligned_cols=41  Identities=12%  Similarity=0.089  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CCcccHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGID-KNPWKKEKG  110 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~-~~~~~~~~~  110 (254)
                      .+.++||+|+ |++|.++++.+...|+ +|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            4678999986 9999999999999999 899998 887665543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=96.49  E-value=0.022  Score=47.48  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=69.7

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      ....++++.+||-+|+|. |..+..+++ .|. +|++++.+++..+.+++.+.......-.   .+....+. ..++ .|
T Consensus       101 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~---~~~~~~l~-~~~~-~f  172 (416)
T 4e2x_A          101 ATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFFE---KATADDVR-RTEG-PA  172 (416)
T ss_dssp             HTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCCS---HHHHHHHH-HHHC-CE
T ss_pred             HHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeeec---hhhHhhcc-cCCC-CE
Confidence            455667899999998764 556666655 588 9999999999999998887654433322   33333332 1223 89


Q ss_pred             cEEEEcCC------ChhHHHHHHHHcccCCcEEEEE
Q 025336          143 DYCFECTG------VPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       143 d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      |+|+-...      ....+..+.+.|+++ |+++..
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~  207 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDALLAPD-GVFVFE  207 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHHcCCC-eEEEEE
Confidence            99996443      123678888999999 998864

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.49  E-value=0.012  Score=44.13  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC--ceEeCCCCCCCchHHHHHHHhhCCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM--TDFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      ......++.+||-+|+|. |..+..+++. +. ++++++.+++..+.+++...  ..++..+-   .++       ....
T Consensus        39 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~---~~~-------~~~~  105 (220)
T 3hnr_A           39 EDVVNKSFGNVLEFGVGT-GNLTNKLLLA-GR-TVYGIEPSREMRMIAKEKLPKEFSITEGDF---LSF-------EVPT  105 (220)
T ss_dssp             HHHHHTCCSEEEEECCTT-SHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHSCTTCCEESCCS---SSC-------CCCS
T ss_pred             HHhhccCCCeEEEeCCCC-CHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHhCCCceEEEeCCh---hhc-------CCCC
Confidence            344455788999998764 6667777766 77 99999999998888876422  11222211   111       1113


Q ss_pred             CccEEEEcCCC-----h---hHHHHHHHHcccCCcEEEEEc
Q 025336          141 GVDYCFECTGV-----P---SLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       141 ~~d~v~d~~g~-----~---~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .||+|+-...-     +   ..+..+.+.++++ |.++...
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  145 (220)
T 3hnr_A          106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG-GKIVFAD  145 (220)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             CeEEEEECcchhcCChHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            89999965321     1   1678888999999 9988764

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.49  E-value=0.0035  Score=50.63  Aligned_cols=78  Identities=17%  Similarity=0.135  Sum_probs=48.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHH----HHhc------CCc-eE--eCCCCCCCchHHHHHHH
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEK----GEAF------GMT-DF--INPDDEPNKSISELVKG  135 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~----~~~~------g~~-~v--~~~~~~~~~~~~~~i~~  135 (254)
                      +.++||+|+ |++|..+++.+...|+ +|+.+.++.++.+.    ++..      +.. .+  .|..+  .+++...+.+
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~   78 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD--SKSVAAARER   78 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC--HHHHHHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCC--HHHHHHHHHH
Confidence            567899986 9999999999999999 67776665443322    2221      122 12  24443  2333344444


Q ss_pred             hhCCCCccEEEEcCCC
Q 025336          136 ITHGMGVDYCFECTGV  151 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~  151 (254)
                      ... .++|++|++.|.
T Consensus        79 ~~~-g~iD~lVnnAG~   93 (327)
T 1jtv_A           79 VTE-GRVDVLVCNAGL   93 (327)
T ss_dssp             CTT-SCCSEEEECCCC
T ss_pred             Hhc-CCCCEEEECCCc
Confidence            433 379999998873

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.48  E-value=0.0062  Score=49.03  Aligned_cols=80  Identities=13%  Similarity=0.027  Sum_probs=48.0

Q ss_pred             cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH--HHHHhc----CCceE-eCCCCCCCchHHHHHHHh
Q 025336           65 AEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK--EKGEAF----GMTDF-INPDDEPNKSISELVKGI  136 (254)
Q Consensus        65 ~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~--~~~~~~----g~~~v-~~~~~~~~~~~~~~i~~~  136 (254)
                      .+-+++.+|||+|+ |.+|..+++.+...|. +|+++++++++.  +.++.+    +...+ .|..+  .+.+.+.+...
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~   85 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD--ACSVQRAVIKA   85 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTC--HHHHHHHHHHH
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceEEEECCCCC--HHHHHHHHHHc
Confidence            34567889999987 9999999999888999 999998876542  223332    11111 23333  12233333222


Q ss_pred             hCCCCccEEEEcCCC
Q 025336          137 THGMGVDYCFECTGV  151 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~  151 (254)
                          ++|+||.+.+.
T Consensus        86 ----~~d~Vih~A~~   96 (335)
T 1rpn_A           86 ----QPQEVYNLAAQ   96 (335)
T ss_dssp             ----CCSEEEECCSC
T ss_pred             ----CCCEEEECccc
Confidence                68999999874

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.48  E-value=0.014  Score=46.12  Aligned_cols=97  Identities=16%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC---ceEeCCCCCCCchHHHHHHHhhC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM---TDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~---~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.++.+||-+|+| .|..+..+++..|+ +|++++.+++..+.+++    .|.   ..++...-   .++     .+ .
T Consensus        79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~-----~~-~  147 (297)
T 2o57_A           79 VLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI-----PC-E  147 (297)
T ss_dssp             CCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC-----SS-C
T ss_pred             CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccC-----CC-C
Confidence            77889999999987 47888888888788 99999999988777754    232   11221111   110     01 1


Q ss_pred             CCCccEEEEcCCC------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...||+|+....-      ...+..+.+.|+|+ |+++....
T Consensus       148 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  188 (297)
T 2o57_A          148 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  188 (297)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence            2379999864331      33578899999999 99887653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.48  E-value=0.0032  Score=48.48  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=46.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHH-----HH-hhCCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELV-----KG-ITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i-----~~-~~~~~~  141 (254)
                      .+.++||+|+ |++|...++.+.. |. +|+++++++++.+.+.+......+.      .++.+..     .+ +..-.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~------~D~~~~~~~~~~~~~~~~~~~   75 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIE------SDIVKEVLEEGGVDKLKNLDH   75 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEE------CCHHHHHHTSSSCGGGTTCSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCccee------cccchHHHHHHHHHHHHhcCC
Confidence            3678999986 9999998877655 88 8999999988877766543222221      1122111     11 111237


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        76 id~lv~~Ag~   85 (245)
T 3e9n_A           76 VDTLVHAAAV   85 (245)
T ss_dssp             CSEEEECC--
T ss_pred             CCEEEECCCc
Confidence            9999999885

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.48  E-value=0.017  Score=46.61  Aligned_cols=72  Identities=13%  Similarity=0.067  Sum_probs=45.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhc-CCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAF-GMTDF-INPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~-g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +|||+|+ |.+|..+++.+... |. +|++++++.++.+.+... +...+ .|..+  ..+....+.+     ++|+||+
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~-----~~d~vih   73 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAISRFLNHPHFHFVEGDISI--HSEWIEYHVK-----KCDVVLP   73 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGGGGTTCTTEEEEECCTTT--CSHHHHHHHH-----HCSEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcchHHHhhcCCCeEEEeccccC--cHHHHHhhcc-----CCCEEEE
Confidence            6899987 99999999888887 88 899998987665433221 22211 13222  1222222211     7899999


Q ss_pred             cCCC
Q 025336          148 CTGV  151 (254)
Q Consensus       148 ~~g~  151 (254)
                      +.+.
T Consensus        74 ~A~~   77 (345)
T 2bll_A           74 LVAI   77 (345)
T ss_dssp             CBCC
T ss_pred             cccc
Confidence            8773

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.48  E-value=0.015  Score=47.14  Aligned_cols=132  Identities=14%  Similarity=0.177  Sum_probs=79.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHH-H-cCCCeEE-EEcCCcccHHH-HHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           71 SSVAVLGLGTVGLGAVDGAR-M-QGAAKII-GIDKNPWKKEK-GEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~-~-~g~~~v~-~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      -+|.|+|+|.+|...++.++ . .++ +++ +.++++++.+. ++++|...+++       ++.+    +....++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~-~~vav~d~~~~~~~~~a~~~g~~~~~~-------~~~~----~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGV-KLVAACALDSNQLEWAKNELGVETTYT-------NYKD----MIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSE-EEEEEECSCHHHHHHHHHTTCCSEEES-------CHHH----HHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHHhCCCcccC-------CHHH----HhcCCCCCEEE
Confidence            47899999999998888776 4 466 654 45777777654 45677654442       2322    22333799999


Q ss_pred             EcCCChhHHHHHHHHcccCCcEEEEEccCCCceeecc-HHHHH----hC-CCEEEeeecCCCCCCCCHHHHHHHHhCCCC
Q 025336          147 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLN-VIALA----CG-GRTLKGTTFGGIKTKSDLPILLDKCKNKEF  220 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~----~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  220 (254)
                      .|+......+.+..+++.+  +-|++..+..  .+.. ...+.    .+ ++.+.-...  ......+..+.+++++|.+
T Consensus        77 i~tp~~~h~~~~~~al~~G--~~v~~eKp~~--~~~~~~~~l~~~a~~~~~~~~~~~~~--~r~~p~~~~~~~~i~~g~i  150 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNAG--LNVFCEKPLG--LDFNEVDEMAKVIKSHPNQIFQSGFM--RRYDDSYRYAKKIVDNGDI  150 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHTT--CEEEECSCCC--SCHHHHHHHHHHHHTCTTSCEECCCG--GGTCHHHHHHHHHHHTTTT
T ss_pred             EeCChHhHHHHHHHHHHCC--CEEEEcCCCC--CCHHHHHHHHHHHHhCCCCeEEEecc--cccCHHHHHHHHHHHcCCC
Confidence            9999876778888888764  5455543221  1111 11121    24 555432221  1123347888899998875

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.48  E-value=0.018  Score=46.23  Aligned_cols=79  Identities=23%  Similarity=0.165  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC---------CcccHHH----HHhcCCceEeCCCCCCCchHHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK---------NPWKKEK----GEAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~---------~~~~~~~----~~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      .+.++||+|+ |++|..+++.+...|+ +|++.++         +.++.+.    ++..+...+.|..+  ..+....+.
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~--~~~~~~~~~   84 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS--VEAGEKLVK   84 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC--GGGHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCC--HHHHHHHHH
Confidence            4678999987 9999999999889999 8988654         3444332    23344444455554  233333333


Q ss_pred             Hhh-CCCCccEEEEcCC
Q 025336          135 GIT-HGMGVDYCFECTG  150 (254)
Q Consensus       135 ~~~-~~~~~d~v~d~~g  150 (254)
                      ++. ...++|++|++.|
T Consensus        85 ~~~~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAG  101 (319)
T ss_dssp             HHHHHTSCCCEEEECCC
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            221 1227999999987

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.47  E-value=0.014  Score=47.42  Aligned_cols=75  Identities=19%  Similarity=0.107  Sum_probs=48.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c----CCceE-eCCCCCCCchHHHHHHHhhCCCCc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F----GMTDF-INPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~----g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      +.+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+.. +    +...+ .|..+  .+.+.+.+...    ++
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~----~~   81 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD--QNKLLESIREF----QP   81 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC--HHHHHHHHHHH----CC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCceEEEEccccC--HHHHHHHHHhc----CC
Confidence            578999987 9999999999888999 99999888765433221 1    12211 23333  12222223222    68


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+||++.+.
T Consensus        82 d~vih~A~~   90 (357)
T 1rkx_A           82 EIVFHMAAQ   90 (357)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCCC
Confidence            999999883

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.46  E-value=0.0046  Score=49.24  Aligned_cols=95  Identities=14%  Similarity=0.098  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC--------Cc--eEeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG--------MT--DFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g--------~~--~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-        ..  .++.      .|..+.+..  .
T Consensus        90 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~l~~--~  160 (296)
T 1inl_A           90 NPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI------ANGAEYVRK--F  160 (296)
T ss_dssp             SCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHGGG--C
T ss_pred             CCCEEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE------CcHHHHHhh--C
Confidence            457999998764 667777777766559999999998888876531        11  1221      333333322  1


Q ss_pred             CCCccEEEE-cCCC----------hhHHHHHHHHcccCCcEEEEEc
Q 025336          139 GMGVDYCFE-CTGV----------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       139 ~~~~d~v~d-~~g~----------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ...||+|+- ....          ...+..+.+.|+++ |.++...
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            237999983 3211          34678888999999 9988764

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.46  E-value=0.0085  Score=51.67  Aligned_cols=84  Identities=13%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCCc-------------cc----HHHHHhcCCceE---eCCCC
Q 025336           66 EVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGI-DKNP-------------WK----KEKGEAFGMTDF---INPDD  123 (254)
Q Consensus        66 ~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~~~~-------------~~----~~~~~~~g~~~v---~~~~~  123 (254)
                      .++++.++||+|+ |++|..+++.+...|+.+++.+ +++.             ++    .+.+++.|....   .|..+
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD  326 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence            3567889999986 9999999988888899557777 7763             22    222344565322   23333


Q ss_pred             CCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336          124 EPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                        .+.+...+.++....++|.+|++.|.
T Consensus       327 --~~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          327 --AEAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             --HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             --HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence              23344444444333479999999884

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.45  E-value=0.013  Score=46.15  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCCc--ccHHHHHh-cCCceE--eCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GT--VGLGAVDGARMQGAAKIIGIDKNP--WKKEKGEA-FGMTDF--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~--~G~~~~~~a~~~g~~~v~~v~~~~--~~~~~~~~-~g~~~v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      ++.++||+|+ |.  +|...++.+...|+ +|++++++.  +..+.+++ .+....  .|..+  .+++...+.++.. .
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVIS--DQEIKDLFVELGKVW  101 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCC--HHHHHHHHHHHHHHc
Confidence            5788999984 44  99999998889999 899998887  44444433 332222  24433  2333333333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus       102 g~id~li~nAg~  113 (280)
T 3nrc_A          102 DGLDAIVHSIAF  113 (280)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            379999999874

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=96.45  E-value=0.037  Score=41.81  Aligned_cols=100  Identities=13%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ++..||=+|+|. |..++.+++...-.+|++++.+++..+.+++    .|...+- ...   .+..+.+........+|.
T Consensus        34 ~~~~vLDiGcG~-G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~-~~~---~Da~~~l~~~~~~~~~d~  108 (218)
T 3dxy_A           34 EAPVTLEIGFGM-GASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLR-VMC---HDAVEVLHKMIPDNSLRM  108 (218)
T ss_dssp             CCCEEEEESCTT-CHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEE-EEC---SCHHHHHHHHSCTTCEEE
T ss_pred             CCCeEEEEeeeC-hHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEE-EEE---CCHHHHHHHHcCCCChhe
Confidence            567888888764 7788888887643389999999988877654    4433221 111   344444443233337898


Q ss_pred             EEEcCCCh--------------hHHHHHHHHcccCCcEEEEEcc
Q 025336          145 CFECTGVP--------------SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       145 v~d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      |+-....+              ..+..+.+.|+|+ |.+++...
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG-G~l~i~td  151 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG-GVFHMATD  151 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC-cEEEEEeC
Confidence            88543221              3678888999999 99877654

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.44  E-value=0.012  Score=45.54  Aligned_cols=81  Identities=16%  Similarity=0.185  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHHHHhc--CCc-eE--eCCCCCCC-chHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW--KKEKGEAF--GMT-DF--INPDDEPN-KSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~~~~~--g~~-~v--~~~~~~~~-~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |++|..+++.+...|+.+|++++++++  ..+.+++.  +.. .+  .|..+  . +++.+.+.+... 
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV--PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS--CHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC--ChHHHHHHHHHHHHh
Confidence            4678999986 999999999999999933888888763  33333332  222 12  24333  2 233333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|++|++.|.
T Consensus        82 ~g~id~lv~~Ag~   94 (254)
T 1sby_A           82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            1279999999873

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.44  E-value=0.0099  Score=47.85  Aligned_cols=76  Identities=13%  Similarity=0.075  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHH-HHHhcCCceE--eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKE-KGEAFGMTDF--INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~-~~~~~g~~~v--~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+.+|||+|+ |.+|..+++.+...|. +|++++++..... .++.+....+  .|..+  .+.+.+.+.+.    ++|+
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d--~~~~~~~~~~~----~~D~   91 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFATGKREVLPPVAGLSVIEGSVTD--AGLLERAFDSF----KPTH   91 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCSSSCGGGSCSCTTEEEEECCTTC--HHHHHHHHHHH----CCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCccchhhhhccCCceEEEeeCCC--HHHHHHHHhhc----CCCE
Confidence            4678999987 9999999999888898 9999988654322 1122221112  23333  12233333332    7999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ||++++.
T Consensus        92 vih~A~~   98 (330)
T 2pzm_A           92 VVHSAAA   98 (330)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999874

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.43  E-value=0.0099  Score=47.91  Aligned_cols=79  Identities=10%  Similarity=0.092  Sum_probs=49.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-----cccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHh
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN-----PWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGI  136 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~-----~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~  136 (254)
                      +.++||+|+ |++|..+++.+...|+ +|+++.++     .++.+.+.    ..+... .  .|..+  .+++...+.+.
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd--~~~v~~~~~~~   81 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS--QVSVDRAIDQI   81 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHH
Confidence            578999986 9999999999999999 89987665     23333332    234321 2  24333  23333333332


Q ss_pred             hC-CCCccEEEEcCCC
Q 025336          137 TH-GMGVDYCFECTGV  151 (254)
Q Consensus       137 ~~-~~~~d~v~d~~g~  151 (254)
                      .. ..++|+++++.|.
T Consensus        82 ~~~~g~iD~lVnnAG~   97 (324)
T 3u9l_A           82 IGEDGRIDVLIHNAGH   97 (324)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence            11 1279999999983

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.43  E-value=0.015  Score=46.13  Aligned_cols=44  Identities=14%  Similarity=0.055  Sum_probs=39.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM  115 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~  115 (254)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+++.|.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   59 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGA   59 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTC
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCC
Confidence            479999999999999998888899 89999999999888877664

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.42  E-value=0.012  Score=47.71  Aligned_cols=69  Identities=23%  Similarity=0.285  Sum_probs=46.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           68 EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        68 ~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      .++.+|||+|+ |.+|..+++.+...|. +|+++++++++      .+...+ .|..+   .+...   +...  ++|+|
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~------~~~~~~~~Dl~d---~~~~~---~~~~--~~d~v   81 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPSG------TGGEEVVGSLED---GQALS---DAIM--GVSAV   81 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCCS------SCCSEEESCTTC---HHHHH---HHHT--TCSEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCCC------CCccEEecCcCC---HHHHH---HHHh--CCCEE
Confidence            35678999987 9999999999999999 89999888765      222222 24443   33222   2222  89999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      |.+.+.
T Consensus        82 ih~A~~   87 (347)
T 4id9_A           82 LHLGAF   87 (347)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            998864

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.41  E-value=0.042  Score=42.27  Aligned_cols=77  Identities=16%  Similarity=0.069  Sum_probs=50.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|.|+|+ |.+|+..++.+... +. +++++....+..+.+...++|.++|...  +....+.+..... .+.++|+-++
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~-elva~~d~~~dl~~~~~~~~DvvIDfT~--p~a~~~~~~~a~~-~g~~~VigTT   77 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDL-TLSAELDAGDPLSLLTDGNTEVVIDFTH--PDVVMGNLEFLID-NGIHAVVGTT   77 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTC-EEEEEECTTCCTHHHHHTTCCEEEECSC--TTTHHHHHHHHHH-TTCEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEccCCCHHHHhccCCcEEEEccC--hHHHHHHHHHHHH-cCCCEEEcCC
Confidence            5889997 99999999988765 78 7766544334444333346788887775  2334444433222 3888999888


Q ss_pred             CCh
Q 025336          150 GVP  152 (254)
Q Consensus       150 g~~  152 (254)
                      |-.
T Consensus        78 G~~   80 (245)
T 1p9l_A           78 GFT   80 (245)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            754

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.41  E-value=0.017  Score=44.79  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHH-HHh----cCCce---EeCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEK-GEA----FGMTD---FINPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~-~~~----~g~~~---v~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+ |.+|..+++.+...|+ +|++++++.++.+. +++    .+...   ..|..+  .+++...+.+... 
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN--TDIVTKTIQQIDAD   89 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC--HHHHHHHHHHHHHh
Confidence            3568999986 9999999999888999 99999886554332 222    24322   124443  2233333333221 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        90 ~~~id~li~~Ag~  102 (265)
T 1h5q_A           90 LGPISGLIANAGV  102 (265)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1279999999874

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.41  E-value=0.0089  Score=45.77  Aligned_cols=78  Identities=17%  Similarity=0.117  Sum_probs=49.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCCcccHHHH----HhcCCce-E-e--CCCCCCCchHHHHHHHhhC-C
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGI-DKNPWKKEKG----EAFGMTD-F-I--NPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~~~~~~~~~~----~~~g~~~-v-~--~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      .++||+|+ |.+|..+++.+...|+ +|+++ ++++++.+.+    +..+... . +  |..+  .+++.+.+.+... .
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   78 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE--AEAATALVHQAAEVL   78 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC--HHHHHHHHHHHHHhc
Confidence            57899986 9999999999988999 88887 7877665543    2234321 1 2  4333  1222222222211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus        79 ~~~d~li~~Ag~   90 (245)
T 2ph3_A           79 GGLDTLVNNAGI   90 (245)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999873

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.41  E-value=0.018  Score=44.73  Aligned_cols=80  Identities=16%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCcc---cHHHHH-hcCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKNPW---KKEKGE-AFGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~~~---~~~~~~-~~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+   |++|..+++.+...|+ +|++++++++   ..+.+. ..+...+  .|..+  .+++...+.+... 
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE--DASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4678999974   6999999999888999 8999988762   222222 2232222  24443  2333333333322 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        85 ~g~iD~lv~~Ag~   97 (265)
T 1qsg_A           85 WPKFDGFVHSIGF   97 (265)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2379999998873

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.40  E-value=0.02  Score=47.38  Aligned_cols=98  Identities=20%  Similarity=0.173  Sum_probs=65.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      +++|++||=.|+|. |..++.+++. |+ +|+++|.+++..+.+++    .|.. .+.   .   .+..+.+... .+ .
T Consensus       212 ~~~g~~VLDlg~Gt-G~~sl~~a~~-ga-~V~avDis~~al~~a~~n~~~ng~~~~~~---~---~D~~~~l~~~-~~-~  280 (393)
T 4dmg_A          212 VRPGERVLDVYSYV-GGFALRAARK-GA-YALAVDKDLEALGVLDQAALRLGLRVDIR---H---GEALPTLRGL-EG-P  280 (393)
T ss_dssp             CCTTCEEEEESCTT-THHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHHTCCCEEE---E---SCHHHHHHTC-CC-C
T ss_pred             hcCCCeEEEcccch-hHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHhCCCCcEE---E---ccHHHHHHHh-cC-C
Confidence            44699999887653 5555666653 88 69999999998888765    3433 333   2   4455555444 34 4


Q ss_pred             ccEEEEcCCC---------------hhHHHHHHHHcccCCcEEEEEccCC
Q 025336          142 VDYCFECTGV---------------PSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       142 ~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ||+|+-....               ...+..+.+.++++ |.++.+....
T Consensus       281 fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpG-G~Lv~~s~s~  329 (393)
T 4dmg_A          281 FHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEE-GFLWLSSCSY  329 (393)
T ss_dssp             EEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECCT
T ss_pred             CCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEECCC
Confidence            9999843322               23567788899999 9998776544

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=96.40  E-value=0.013  Score=46.49  Aligned_cols=45  Identities=20%  Similarity=0.243  Sum_probs=36.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF  113 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~  113 (254)
                      .++.+||-+|+|. |..+..+++..+..+|+++|.++.-.+.+++.
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHHT
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence            3678999999874 78888999987655999999999888887763

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.39  E-value=0.036  Score=43.00  Aligned_cols=44  Identities=27%  Similarity=0.376  Sum_probs=36.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh-cCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA-FGMT  116 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~-~g~~  116 (254)
                      +|.|+|+|.+|...+..+...| . +|++.++++++.+.+++ +|..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~-~v~~~~r~~~~~~~~~~~~g~~   47 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGAEKRERLEKELGVE   47 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSHHHHHHHHHHTCCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC-eEEEECCCHHHHHHHHHhcCCE
Confidence            5889999999999888888888 7 89999999888877654 4643

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.39  E-value=0.022  Score=45.05  Aligned_cols=73  Identities=12%  Similarity=0.113  Sum_probs=50.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|.|+|+|.+|...+..+...|. +|++.+ ++++.+.+++.|...   .     .+..+.+.      ..|+|+-|+..
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~~~~~~~~~~g~~~---~-----~~~~~~~~------~~D~vi~~vp~   68 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGH-QLHVTT-IGPVADELLSLGAVN---V-----ETARQVTE------FADIIFIMVPD   68 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTC-EEEECC-SSCCCHHHHTTTCBC---C-----SSHHHHHH------TCSEEEECCSS
T ss_pred             EEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CHHHHHHHHHcCCcc---c-----CCHHHHHh------cCCEEEEECCC
Confidence            68999999999998888888898 899888 888877776655321   1     12222221      56888888876


Q ss_pred             hhHHHHHHH
Q 025336          152 PSLLSEALE  160 (254)
Q Consensus       152 ~~~~~~~~~  160 (254)
                      +..++..+.
T Consensus        69 ~~~~~~v~~   77 (295)
T 1yb4_A           69 TPQVEDVLF   77 (295)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            544455553

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.38  E-value=0.0076  Score=47.27  Aligned_cols=78  Identities=10%  Similarity=0.083  Sum_probs=51.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcC---CceE--eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFG---MTDF--INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g---~~~v--~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++.   ....  .|..+  .+++...+.+... ..++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD--RAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHhCCC
Confidence            67899986 8999999999999999 9999999887766543 222   1112  24443  2233333333211 1278


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        99 D~lvnnAG~  107 (272)
T 2nwq_A           99 RGLINNAGL  107 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.38  E-value=0.0035  Score=48.33  Aligned_cols=102  Identities=15%  Similarity=0.102  Sum_probs=63.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh--
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQ--GAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT--  137 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~--  137 (254)
                      ...++.+||-+|+|. |..++.+++..  +. +|++++.+++..+.+++    .|...-+....   .+..+.+..+.  
T Consensus        57 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~~~~~  131 (242)
T 3r3h_A           57 RLTRAKKVLELGTFT-GYSALAMSLALPDDG-QVITCDINEGWTKHAHPYWREAKQEHKIKLRL---GPALDTLHSLLNE  131 (242)
T ss_dssp             HHHTCSEEEEEESCC-SHHHHHHHHTSCTTC-EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE---SCHHHHHHHHHHH
T ss_pred             hhcCcCEEEEeeCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHhhc
Confidence            345678999998764 67777888866  45 99999999876665543    45321111111   33333333331  


Q ss_pred             -CCCCccEEEEcCCCh---hHHHHHHHHcccCCcEEEEEc
Q 025336          138 -HGMGVDYCFECTGVP---SLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       138 -~~~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g  173 (254)
                       ....||+||-.....   ..++.+.+.|+++ |.++.-.
T Consensus       132 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~  170 (242)
T 3r3h_A          132 GGEHQFDFIFIDADKTNYLNYYELALKLVTPK-GLIAIDN  170 (242)
T ss_dssp             HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCC-eEEEEEC
Confidence             123899998433322   2477888999999 9988743

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.38  E-value=0.0085  Score=45.76  Aligned_cols=101  Identities=15%  Similarity=0.207  Sum_probs=66.4

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc---eEeCCCCCCCchHHHHHHHhh
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT---DFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      +.......++.+||-+|+|. |..+..+++. |..++++++.+++..+.+++....   .++..      +... + .. 
T Consensus        35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~------d~~~-~-~~-  103 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERA------DLDK-L-HL-  103 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEEC------CGGG-C-CC-
T ss_pred             HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEc------Chhh-c-cC-
Confidence            44555666889999998764 6667777766 555899999999988888875432   12211      1111 0 01 


Q ss_pred             CCCCccEEEEcCCC------hhHHHHHHHHcccCCcEEEEEc
Q 025336          138 HGMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       138 ~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ....||+|+....-      ...+..+.+.++++ |+++...
T Consensus       104 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  144 (243)
T 3bkw_A          104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPG-GHFVFST  144 (243)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCCceEEEEeccccccchHHHHHHHHHHhcCcC-cEEEEEe
Confidence            22379999864331      23577888999999 9988753

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.38  E-value=0.014  Score=45.39  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             CCCCEEEEEc-C--CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceE--eCCCCCCCchHHHHHHHhhC
Q 025336           68 EKGSSVAVLG-L--GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDF--INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        68 ~~~~~vlI~G-~--g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v--~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .++.+|||+| +  +++|...++.+...|+ +|++++++++..+.+++    .+...+  .|..+  .+++...+.++..
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVAD--DAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCC--HHHHHHHHHHHHH
Confidence            4678999997 4  6999999999889999 99999888654444432    342222  24433  2233333333221


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|++|++.|.
T Consensus        89 ~~g~id~lv~nAg~  102 (271)
T 3ek2_A           89 HWDSLDGLVHSIGF  102 (271)
T ss_dssp             HCSCEEEEEECCCC
T ss_pred             HcCCCCEEEECCcc
Confidence             1279999998873

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.37  E-value=0.032  Score=45.06  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ++.+|+|+|+|++|..+++.+...|.+++..+|.+.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            467999999999999999999999999999987754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.37  E-value=0.019  Score=44.68  Aligned_cols=102  Identities=21%  Similarity=0.267  Sum_probs=68.9

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CC---ceEeCCCCCCCchHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GM---TDFINPDDEPNKSISELV  133 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~---~~v~~~~~~~~~~~~~~i  133 (254)
                      +....+++++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++.    |.   ..++..+-   .++    
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~----  123 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADA---MDL----  123 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc---ccC----
Confidence            44667788999999999875 7888888888888 999999999888777642    32   12221111   110    


Q ss_pred             HHhhCCCCccEEEEcCC------ChhHHHHHHHHcccCCcEEEEEcc
Q 025336          134 KGITHGMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       .. ....||+|+-...      ....+..+.+.++|+ |++++...
T Consensus       124 -~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~  167 (273)
T 3bus_A          124 -PF-EDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIADF  167 (273)
T ss_dssp             -CS-CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEEE
T ss_pred             -CC-CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence             01 1237999984321      133577888899999 99887653

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.36  E-value=0.021  Score=44.33  Aligned_cols=80  Identities=18%  Similarity=0.299  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCcc---cHHHHHh-cCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKNPW---KKEKGEA-FGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~~~---~~~~~~~-~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      ++.++||+|+   |++|...++.+...|+ +|++++++++   ..+.+.+ .+....  .|..+  .+++...+.+... 
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ--DEELDALFAGVKEA   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999974   6999999988888899 8999988875   2222222 342222  24443  1223333322211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        84 ~g~iD~lv~~Ag~   96 (261)
T 2wyu_A           84 FGGLDYLVHAIAF   96 (261)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999873

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.36  E-value=0.013  Score=45.42  Aligned_cols=100  Identities=19%  Similarity=0.219  Sum_probs=66.1

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCc--eEeCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMT--DFINPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~--~v~~~~~~~~~~~~~~i~~  135 (254)
                      .....++++.+||-+|+| .|..+..+++. +. +|++++.+++..+.+++.    |..  .++..+-   .++     .
T Consensus        30 ~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l-----~   98 (260)
T 1vl5_A           30 MQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----P   98 (260)
T ss_dssp             HHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----C
T ss_pred             HHHhCCCCCCEEEEEeCC-CCHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhC-----C
Confidence            345567789999999987 47777777765 45 899999999888877653    322  1221111   111     0


Q ss_pred             hhCCCCccEEEEcCCC------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      + ....||+|+....-      ...+..+.+.|+|+ |+++....
T Consensus        99 ~-~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~~  141 (260)
T 1vl5_A           99 F-TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN  141 (260)
T ss_dssp             S-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             C-CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEEc
Confidence            1 22379999975432      34688899999999 99987643

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.36  E-value=0.03  Score=45.39  Aligned_cols=74  Identities=20%  Similarity=0.214  Sum_probs=52.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccc-HHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWK-KEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +.+|.|+|.|.+|...++.++..|. +|++.++++++ .+.+++.|... .   +     ..+.+.      ..|+|+-|
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~~~-~---~-----~~e~~~------~aDvVila   79 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGLKV-A---D-----VKTAVA------AADVVMIL   79 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTCEE-E---C-----HHHHHH------TCSEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCCEE-c---c-----HHHHHh------cCCEEEEe
Confidence            4579999999999999999999998 88888888765 66777777632 2   1     112221      67888888


Q ss_pred             CCChhHHHHHHH
Q 025336          149 TGVPSLLSEALE  160 (254)
Q Consensus       149 ~g~~~~~~~~~~  160 (254)
                      +.... ....+.
T Consensus        80 vp~~~-~~~v~~   90 (338)
T 1np3_A           80 TPDEF-QGRLYK   90 (338)
T ss_dssp             SCHHH-HHHHHH
T ss_pred             CCcHH-HHHHHH
Confidence            87653 344443

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.35  E-value=0.014  Score=44.52  Aligned_cols=74  Identities=15%  Similarity=0.117  Sum_probs=47.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +.++||+|+ |.+|...++.+...|+ +|++++++++ .+   +. .....|..+  .+++.+.+.+.....++|+++++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~-~~---~~-~~~~~D~~~--~~~~~~~~~~~~~~~~~d~li~~   73 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE-GE---DL-IYVEGDVTR--EEDVRRAVARAQEEAPLFAVVSA   73 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC-SS---SS-EEEECCTTC--HHHHHHHHHHHHHHSCEEEEEEC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCcc-cc---ce-EEEeCCCCC--HHHHHHHHHHHHhhCCceEEEEc
Confidence            568999987 9999999988888899 8999988765 11   11 011224333  23333333333111279999998


Q ss_pred             CCC
Q 025336          149 TGV  151 (254)
Q Consensus       149 ~g~  151 (254)
                      .|.
T Consensus        74 ag~   76 (242)
T 1uay_A           74 AGV   76 (242)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            873

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.35  E-value=0.0033  Score=48.10  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=63.2

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHHH-H
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELVK-G  135 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~-~  135 (254)
                      ....++.+||-+|+|. |..+..+++.. +. +|++++.+++..+.+++    .|..   .++..      +..+.+. .
T Consensus        67 ~~~~~~~~vLDiG~G~-G~~~~~la~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~------d~~~~~~~~  138 (232)
T 3ntv_A           67 IRMNNVKNILEIGTAI-GYSSMQFASISDDI-HVTTIERNETMIQYAKQNLATYHFENQVRIIEG------NALEQFENV  138 (232)
T ss_dssp             HHHHTCCEEEEECCSS-SHHHHHHHTTCTTC-EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES------CGGGCHHHH
T ss_pred             HhhcCCCEEEEEeCch-hHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC------CHHHHHHhh
Confidence            3445788999998764 67777777754 45 99999999988888765    3421   22221      2222222 2


Q ss_pred             hhCCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEc
Q 025336          136 ITHGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      . . ..||+|+-....   ...++.+.+.|+++ |.++.-.
T Consensus       139 ~-~-~~fD~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~d~  176 (232)
T 3ntv_A          139 N-D-KVYDMIFIDAAKAQSKKFFEIYTPLLKHQ-GLVITDN  176 (232)
T ss_dssp             T-T-SCEEEEEEETTSSSHHHHHHHHGGGEEEE-EEEEEEC
T ss_pred             c-c-CCccEEEEcCcHHHHHHHHHHHHHhcCCC-eEEEEee
Confidence            2 2 389999943332   23467788899999 9987743

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.35  E-value=0.013  Score=45.99  Aligned_cols=95  Identities=18%  Similarity=0.198  Sum_probs=63.2

Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLG-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      .+||+.......|....---.|.+++|+|.| .+|.-+++++...|+ +|++..+.                   .   .
T Consensus       138 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t---~  194 (288)
T 1b0a_A          138 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRF-------------------T---K  194 (288)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSS-------------------C---S
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCC-------------------c---h
Confidence            3455444444444333323478999999986 579999999999999 88777322                   1   3


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          128 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++.+.++      ..|++|.++|.+..+..  ..++++ ..++++|..
T Consensus       195 ~L~~~~~------~ADIVI~Avg~p~lI~~--~~vk~G-avVIDVgi~  233 (288)
T 1b0a_A          195 NLRHHVE------NADLLIVAVGKPGFIPG--DWIKEG-AIVIDVGIN  233 (288)
T ss_dssp             CHHHHHH------HCSEEEECSCCTTCBCT--TTSCTT-CEEEECCCE
T ss_pred             hHHHHhc------cCCEEEECCCCcCcCCH--HHcCCC-cEEEEccCC
Confidence            3444443      68999999998743221  236777 888888865

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.35  E-value=0.017  Score=46.00  Aligned_cols=69  Identities=19%  Similarity=0.158  Sum_probs=47.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++.+.+ ++  +.. ++..+    -. .+.+.+...  ++|+||+++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~-~~~~D----l~-~~~~~~~~~--~~d~Vih~a   70 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYE-YRVSD----YT-LEDLINQLN--DVDAVVHLA   70 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCE-EEECC----CC-HHHHHHHTT--TCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceE-EEEcc----cc-HHHHHHhhc--CCCEEEEcc
Confidence            57999986 9999999999999999 9999999855544 33  333 22222    22 444555443  899999998


Q ss_pred             CC
Q 025336          150 GV  151 (254)
Q Consensus       150 g~  151 (254)
                      +.
T Consensus        71 ~~   72 (311)
T 3m2p_A           71 AT   72 (311)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.34  E-value=0.0042  Score=48.39  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhC-CCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v  145 (254)
                      .+.++||+|+ |++|...++.+...|+ +|++++++.++.+..   .... ..|..+  .+++...+.+... ..++|++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~---~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD~l  100 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSADP---DIHTVAGDISK--PETADRIVREGIERFGRIDSL  100 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSST---TEEEEESCTTS--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccC---ceEEEEccCCC--HHHHHHHHHHHHHHCCCCCEE
Confidence            4678999986 9999999999999999 999998886654321   1111 124333  1223222322211 1279999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus       101 v~nAg~  106 (260)
T 3un1_A          101 VNNAGV  106 (260)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.34  E-value=0.014  Score=45.03  Aligned_cols=40  Identities=20%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCCcccHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGI-DKNPWKKEK  109 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~~~~~~~~~  109 (254)
                      ++.++||+|+ +++|...++.+...|+ +|+++ .++.++.+.
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~   47 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEE   47 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            4788999986 8999999999999999 78775 555554443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.33  E-value=0.024  Score=41.41  Aligned_cols=101  Identities=15%  Similarity=0.100  Sum_probs=67.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCc----eEeCCCCCCCchHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMT----DFINPDDEPNKSISEL  132 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~----~v~~~~~~~~~~~~~~  132 (254)
                      +......+++.+||-+|+|. |..+..+++. +. ++++++.+++..+.+++.    +..    .++..+-   .+.   
T Consensus        44 l~~~~~~~~~~~vLdiG~G~-G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~---  114 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCGY-GVIGIALADE-VK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YEN---  114 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TTT---
T ss_pred             HHHHcccCCCCeEEEeCCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch---hcc---
Confidence            34566677899999998764 7777777777 77 999999999888877652    322    2222111   110   


Q ss_pred             HHHhhCCCCccEEEEcCCC-------hhHHHHHHHHcccCCcEEEEEccC
Q 025336          133 VKGITHGMGVDYCFECTGV-------PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~-------~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                          .....||+|+-...-       ...+..+.+.++++ |+++.....
T Consensus       115 ----~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  159 (194)
T 1dus_A          115 ----VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVVIQT  159 (194)
T ss_dssp             ----CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEEEES
T ss_pred             ----cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCC-CEEEEEECC
Confidence                113379999964321       23567778889999 998877654

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.33  E-value=0.018  Score=47.97  Aligned_cols=85  Identities=16%  Similarity=0.122  Sum_probs=53.0

Q ss_pred             hcCC-CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCCcccH----------------HHHHhcCCce-E--eCC
Q 025336           64 EAEV-EKGSSVAVLGL-GTVGLGAVDGARM-QGAAKIIGIDKNPWKK----------------EKGEAFGMTD-F--INP  121 (254)
Q Consensus        64 ~~~~-~~~~~vlI~G~-g~~G~~~~~~a~~-~g~~~v~~v~~~~~~~----------------~~~~~~g~~~-v--~~~  121 (254)
                      ..++ +.++++||+|+ +++|++.+..+.. .|+ +|++++++++..                +.+++.|... .  .|-
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dv  132 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDA  132 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecC
Confidence            3445 35778899986 8999998877777 999 899887765432                3345566432 2  243


Q ss_pred             CCCCCchHHHHHHHhhC-C-CCccEEEEcCCC
Q 025336          122 DDEPNKSISELVKGITH-G-MGVDYCFECTGV  151 (254)
Q Consensus       122 ~~~~~~~~~~~i~~~~~-~-~~~d~v~d~~g~  151 (254)
                      .+  .+...+.+.+... - .++|+++++.|.
T Consensus       133 td--~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          133 FS--DAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             TS--HHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CC--HHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            33  2333333333221 1 389999998875

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.32  E-value=0.022  Score=42.75  Aligned_cols=100  Identities=18%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHH----HHhcCCceEeCCCCCCCchHHHHHHHhhCCC
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK----GEAFGMTDFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~----~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      ..++++++||=+|+|+ |..+..+++..+..+|++++.+++..+.    ++.......+..+.   ..... .... . .
T Consensus        53 ~~~~~g~~VLDlGcGt-G~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~---~~~~~-~~~~-~-~  125 (210)
T 1nt2_A           53 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWK-YSGI-V-E  125 (210)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGG-TTTT-C-C
T ss_pred             cCCCCCCEEEEECCcC-CHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCC---CCchh-hccc-c-c
Confidence            4578899999999874 7777888887753489999999874432    33332111221111   11100 0011 2 3


Q ss_pred             CccEEEEcCCChh----HHHHHHHHcccCCcEEEEE
Q 025336          141 GVDYCFECTGVPS----LLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       141 ~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~  172 (254)
                      .||+|+-....+.    .+..+.+.|+|+ |+++..
T Consensus       126 ~fD~V~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~i~  160 (210)
T 1nt2_A          126 KVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM  160 (210)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ceeEEEEeccChhHHHHHHHHHHHHhCCC-CEEEEE
Confidence            7999996554332    257788899999 998876

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.32  E-value=0.0051  Score=49.13  Aligned_cols=97  Identities=12%  Similarity=0.066  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC---------C-ceEeCCCCCCCchHHHHHHHh
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG---------M-TDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g---------~-~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      ..++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-         . -.++.      .+..+.+.. 
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~------~Da~~~l~~-  164 (304)
T 2o07_A           93 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ-  164 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT-
T ss_pred             CCCCCEEEEECCCc-hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHhh-
Confidence            34668999998764 667777777755459999999998888887531         1 11221      334443433 


Q ss_pred             hCCCCccEEE-EcCCC---------hhHHHHHHHHcccCCcEEEEEc
Q 025336          137 THGMGVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       137 ~~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      . ...||+|+ |....         ...+..+.+.|+++ |.++.-.
T Consensus       165 ~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  209 (304)
T 2o07_A          165 N-QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG  209 (304)
T ss_dssp             C-SSCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred             C-CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCC-eEEEEec
Confidence            2 23799999 43321         23578889999999 9988754

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.31  E-value=0.013  Score=42.50  Aligned_cols=98  Identities=13%  Similarity=0.074  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHHHHhhCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ..++++||-+|+|. |..+..+++. +..+|++++.+++..+.+++    .+..   .++.      .+..+.+... .+
T Consensus        29 ~~~~~~vLDlGcG~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~------~d~~~~~~~~-~~   99 (177)
T 2esr_A           29 YFNGGRVLDLFAGS-GGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK------MEAERAIDCL-TG   99 (177)
T ss_dssp             CCCSCEEEEETCTT-CHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC------SCHHHHHHHB-CS
T ss_pred             hcCCCeEEEeCCCC-CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE------CcHHHhHHhh-cC
Confidence            56788999998764 6666667766 54599999999988887765    3322   1222      3344433322 22


Q ss_pred             CCccEEEEcCCC-----hhHHHHHH--HHcccCCcEEEEEccC
Q 025336          140 MGVDYCFECTGV-----PSLLSEAL--ETTKVGKGKVIVIGVG  175 (254)
Q Consensus       140 ~~~d~v~d~~g~-----~~~~~~~~--~~l~~~~G~~v~~g~~  175 (254)
                       .||+|+-...-     ...+..+.  +.|+++ |.++..-..
T Consensus       100 -~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~g-G~l~~~~~~  140 (177)
T 2esr_A          100 -RFDLVFLDPPYAKETIVATIEALAAKNLLSEQ-VMVVCETDK  140 (177)
T ss_dssp             -CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEE-EEEEEEEET
T ss_pred             -CCCEEEECCCCCcchHHHHHHHHHhCCCcCCC-cEEEEEECC
Confidence             69999854221     12344444  678998 988765543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.29  E-value=0.019  Score=43.53  Aligned_cols=100  Identities=19%  Similarity=0.233  Sum_probs=65.6

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC-ceEeCCCCCCCchHHHHHHHhhC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM-TDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ...++++.+||-+|+|..|..+..+++..+. +|++++.+++..+.+++    .+. ..++..+-   ..+    ..+..
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~----~~~~~  121 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG---GII----KGVVE  121 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS---CSS----TTTCC
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc---hhh----hhccc
Confidence            3446789999999988558888888887666 99999999988887764    342 12222110   001    11122


Q ss_pred             CCCccEEEEcCC---------------------C----hhHHHHHHHHcccCCcEEEEEc
Q 025336          139 GMGVDYCFECTG---------------------V----PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       139 ~~~~d~v~d~~g---------------------~----~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                       ..||+|+-...                     +    ...+..+.+.|+++ |+++.+-
T Consensus       122 -~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  179 (230)
T 3evz_A          122 -GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALYL  179 (230)
T ss_dssp             -SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             -CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEEe
Confidence             38999994311                     0    33577788889999 9988753

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.29  E-value=0.023  Score=45.36  Aligned_cols=74  Identities=15%  Similarity=0.241  Sum_probs=47.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      -++..+|||+|+ |.+|..+++.+...|. +|+++++++++ +.   ++...+ .|..+  .+.+.+.+..    .++|+
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-~~---l~~~~~~~Dl~d--~~~~~~~~~~----~~~d~   77 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNEA-KL---PNVEMISLDIMD--SQRVKKVISD----IKPDY   77 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTTC-CC---TTEEEEECCTTC--HHHHHHHHHH----HCCSE
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCcc-cc---ceeeEEECCCCC--HHHHHHHHHh----cCCCE
Confidence            456678999987 9999999999988999 99999887655 21   232221 23333  1222222222    26999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ||.+.+.
T Consensus        78 vih~A~~   84 (321)
T 2pk3_A           78 IFHLAAK   84 (321)
T ss_dssp             EEECCSC
T ss_pred             EEEcCcc
Confidence            9999874

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.28  E-value=0.016  Score=47.57  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=48.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      ..+|||+|+ |.+|..+++.+...|+ +|+++++++.+.......+...+ .|..+   .+.   +.+...  ++|+||+
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d---~~~---~~~~~~--~~d~Vih   99 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMTEDMFCDEFHLVDLRV---MEN---CLKVTE--GVDHVFN   99 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSCGGGTCSEEEECCTTS---HHH---HHHHHT--TCSEEEE
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCccchhhccCCceEEECCCCC---HHH---HHHHhC--CCCEEEE
Confidence            468999987 9999999998888898 99999887655432222233222 23333   222   222222  7999999


Q ss_pred             cCCC
Q 025336          148 CTGV  151 (254)
Q Consensus       148 ~~g~  151 (254)
                      +.+.
T Consensus       100 ~A~~  103 (379)
T 2c5a_A          100 LAAD  103 (379)
T ss_dssp             CCCC
T ss_pred             Ccee
Confidence            9873

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.28  E-value=0.0076  Score=49.44  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc-------ccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP-------WKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~-------~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      +..+|+|+|+|..|..+++++..+|.++|+.+|++.       +++...+. +....-.....   .++.+.++      
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~---~~L~eav~------  257 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKS---GTLEDALE------  257 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCC---CSCSHHHH------
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccch---hhHHHHhc------
Confidence            567899999999999999999999998999998863       11222211 11000000011   34555554      


Q ss_pred             CccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEee
Q 025336          141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT  197 (254)
Q Consensus       141 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~  197 (254)
                      +.|++|-+++..-.-+..++.|+++ -.++.+.++..   ...+......+..+.++
T Consensus       258 ~ADV~IG~Sapgl~T~EmVk~Ma~~-pIIfalsNPt~---E~~pe~a~~~g~~i~at  310 (398)
T 2a9f_A          258 GADIFIGVSAPGVLKAEWISKMAAR-PVIFAMANPIP---EIYPDEALEAGAYIVGT  310 (398)
T ss_dssp             TTCSEEECCSTTCCCHHHHHTSCSS-CEEEECCSSSC---SSCHHHHHTTTCSEEEE
T ss_pred             cCCEEEecCCCCCCCHHHHHhhCCC-CEEEECCCCCc---cCCHHHHHHhCCeEEEe
Confidence            5699998877443457888999987 78878777642   34444444334444443

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.27  E-value=0.0064  Score=48.81  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC---------Cc--eEeCCCCCCCchHHHHHHHh
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG---------MT--DFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g---------~~--~v~~~~~~~~~~~~~~i~~~  136 (254)
                      .+..+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-         ..  .++.      .+..+.+.. 
T Consensus        76 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~------~D~~~~l~~-  147 (314)
T 1uir_A           76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI------DDARAYLER-  147 (314)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE------SCHHHHHHH-
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEE------chHHHHHHh-
Confidence            4567999998764 667777777655459999999998888876521         11  1221      334443433 


Q ss_pred             hCCCCccEEE-EcCC------------ChhHHHHHHHHcccCCcEEEEE
Q 025336          137 THGMGVDYCF-ECTG------------VPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       137 ~~~~~~d~v~-d~~g------------~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      . ...||+|+ |...            ....+..+.+.|+++ |.++..
T Consensus       148 ~-~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~  194 (314)
T 1uir_A          148 T-EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQ  194 (314)
T ss_dssp             C-CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEE
T ss_pred             c-CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCC-cEEEEE
Confidence            2 33799998 4322            123578889999999 998875

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.27  E-value=0.017  Score=45.17  Aligned_cols=80  Identities=13%  Similarity=0.178  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCcc---cHHHHHh-cCCceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKNPW---KKEKGEA-FGMTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~~~---~~~~~~~-~g~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .+.++||+|+   |++|..+++.+...|+ +|++++++++   ..+.+++ .+...+  .|..+  .+++...+.+... 
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK--EEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999974   7999999999998999 8999988875   2333322 342222  24443  1223333332211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        82 ~g~id~lv~nAg~   94 (275)
T 2pd4_A           82 LGSLDFIVHSVAF   94 (275)
T ss_dssp             TSCEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            1279999998873

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.26  E-value=0.015  Score=45.61  Aligned_cols=97  Identities=21%  Similarity=0.226  Sum_probs=64.9

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC-ceEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM-TDFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ....+.++.+||-+|+|. |..+..+++ .+. +|++++.+++..+.+++... ..++...-   .+       +.....
T Consensus        51 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~-------~~~~~~  117 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCGT-GQLTEKIAQ-SGA-EVLGTDNAATMIEKARQNYPHLHFDVADA---RN-------FRVDKP  117 (279)
T ss_dssp             HHHCCCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHCTTSCEEECCT---TT-------CCCSSC
T ss_pred             HHhCCCCCCEEEEecCCC-CHHHHHHHh-CCC-eEEEEECCHHHHHHHHhhCCCCEEEECCh---hh-------CCcCCC
Confidence            445567889999998764 777777777 677 99999999998888876421 11121111   11       111237


Q ss_pred             ccEEEEcCCC------hhHHHHHHHHcccCCcEEEEEc
Q 025336          142 VDYCFECTGV------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       142 ~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ||+|+....-      ...+..+.+.++|+ |+++...
T Consensus       118 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~~  154 (279)
T 3ccf_A          118 LDAVFSNAMLHWVKEPEAAIASIHQALKSG-GRFVAEF  154 (279)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cCEEEEcchhhhCcCHHHHHHHHHHhcCCC-cEEEEEe
Confidence            9999864321      23578889999999 9988654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.25  E-value=0.025  Score=47.43  Aligned_cols=103  Identities=15%  Similarity=0.189  Sum_probs=68.2

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eEeCCCCCCCchHHHHHHHhh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ....++++++||-.|+|+ |..+.++++..+..+|++++.++++.+.+++    +|.. .++..+.   .+....   + 
T Consensus       240 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~---~~~~~~---~-  311 (429)
T 1sqg_A          240 TWLAPQNGEHILDLCAAP-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQW---C-  311 (429)
T ss_dssp             HHHCCCTTCEEEEESCTT-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHHH---H-
T ss_pred             HHcCCCCcCeEEEECCCc-hHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch---hhchhh---c-
Confidence            345678899999998876 7777788887653489999999999888754    4532 2332221   222211   2 


Q ss_pred             CCCCccEEEE---cCCCh-------------------------hHHHHHHHHcccCCcEEEEEcc
Q 025336          138 HGMGVDYCFE---CTGVP-------------------------SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       138 ~~~~~d~v~d---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .+..||.|+-   |.|..                         ..+..+.+.++++ |+++....
T Consensus       312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG-G~lvystc  375 (429)
T 1sqg_A          312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYATC  375 (429)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEES
T ss_pred             ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEEC
Confidence            2237999984   55421                         3467788889999 99887653

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.25  E-value=0.016  Score=44.39  Aligned_cols=80  Identities=14%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC------eEEEEcCCcccHHHHHh----cCCce-E--eCCCCCCCchHHHHHHH
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAA------KIIGIDKNPWKKEKGEA----FGMTD-F--INPDDEPNKSISELVKG  135 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~------~v~~v~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~~~i~~  135 (254)
                      +.++||+|+ |++|...++.+...|+.      +|+++++++++.+.+.+    .+... .  .|..+  .+.+...+.+
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~   79 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD--MADVRRLTTH   79 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS--HHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC--HHHHHHHHHH
Confidence            467999986 99999999888888874      68888888776654432    24321 2  24333  1223333332


Q ss_pred             hhC-CCCccEEEEcCCC
Q 025336          136 ITH-GMGVDYCFECTGV  151 (254)
Q Consensus       136 ~~~-~~~~d~v~d~~g~  151 (254)
                      +.. ..++|++|++.|.
T Consensus        80 ~~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHHTSCCSEEEECCCC
T ss_pred             HHHhCCCCCEEEEcCCc
Confidence            221 1279999999873

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.24  E-value=0.0076  Score=48.55  Aligned_cols=99  Identities=12%  Similarity=0.086  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-------eEeCCCCCCCchHHHHHHHhhCCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-------DFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-------~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      .++.+||.+|+|. |..+..+++..+..+|++++.+++-.+.+++.-..       .-+....   .|..+.+...  ..
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~---~D~~~~l~~~--~~  188 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI---EDASKFLENV--TN  188 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE---SCHHHHHHHC--CS
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE---ccHHHHHhhc--CC
Confidence            3567999998764 66777777775544999999999988888763211       0011111   3344444332  23


Q ss_pred             CccEEE-EcCC---C------hhHHHHHHHHcccCCcEEEEEc
Q 025336          141 GVDYCF-ECTG---V------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       141 ~~d~v~-d~~g---~------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .||+|+ |...   .      ...+..+.+.|+++ |.++...
T Consensus       189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  230 (321)
T 2pt6_A          189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQC  230 (321)
T ss_dssp             CEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            799999 4321   0      34678888999999 9988754

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.24  E-value=0.0095  Score=45.61  Aligned_cols=79  Identities=15%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCCcccHHHHH----hcCCce-E--eCCCCCCCchHHHHHHHhhC-C
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIG-IDKNPWKKEKGE----AFGMTD-F--INPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~-v~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      |.++||+|+ |.+|...++.+...|+ +|++ ..+++++.+.+.    ..+... .  .|..+  .+++...+.+... .
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAW   77 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            467899986 9999999999999999 8888 477766654432    234321 1  24333  1233333333211 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|++|++.|.
T Consensus        78 g~id~li~~Ag~   89 (244)
T 1edo_A           78 GTIDVVVNNAGI   89 (244)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.24  E-value=0.0092  Score=44.55  Aligned_cols=97  Identities=18%  Similarity=0.170  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC----ceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM----TDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      ++++.+||-+|+|. |..+..+++. |..++++++.+++..+.+++...    -.++..+-   .++     .. ....|
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~-----~~-~~~~f  108 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKL-----DF-PSASF  108 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSC-----CS-CSSCE
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcC-----CC-CCCcc
Confidence            47788999999875 7777777776 44489999999998888876432    11221111   111     11 22379


Q ss_pred             cEEEEcCC---------------------ChhHHHHHHHHcccCCcEEEEEccC
Q 025336          143 DYCFECTG---------------------VPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       143 d~v~d~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      |+|+....                     ....+..+.+.++++ |+++.....
T Consensus       109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~~  161 (215)
T 2pxx_A          109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTSA  161 (215)
T ss_dssp             EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEESC
T ss_pred             cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeCC
Confidence            99996321                     133577888899999 999887643

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.23  E-value=0.026  Score=45.06  Aligned_cols=91  Identities=19%  Similarity=0.205  Sum_probs=56.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc-cHHHH---HhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW-KKEKG---EAFGMTDF-INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~-~~~~~---~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++. +.+.+   +..+...+ .|..+   .+.   +.+...  ++|.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d---~~~---l~~a~~--~~d~   82 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDE---HEK---LVELMK--KVDV   82 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTTCSCHHHHHHHHHTTCEEEECCTTC---HHH---HHHHHT--TCSE
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCCCchhhHHHHhhcCCCEEEEecCCC---HHH---HHHHHc--CCCE
Confidence            47999997 9999999999988898 8999988874 44333   33455432 24443   322   223222  6999


Q ss_pred             EEEcCCChh--HHHHHHHHcccC--CcEEE
Q 025336          145 CFECTGVPS--LLSEALETTKVG--KGKVI  170 (254)
Q Consensus       145 v~d~~g~~~--~~~~~~~~l~~~--~G~~v  170 (254)
                      ||.+++...  ....+++.+...  -.+++
T Consensus        83 vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           83 VISALAFPQILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             EEECCCGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred             EEECCchhhhHHHHHHHHHHHhcCCCCEEE
Confidence            999987431  233444444432  04665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-33
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-31
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	5e-31
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	2e-29
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	4e-28
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	9e-26
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	1e-23
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	2e-20
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	3e-15
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	4e-15
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	8e-13
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	1e-12
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	2e-12
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-11
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	2e-11
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	3e-09
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	4e-09
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	1e-08
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	2e-08
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	1e-07
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	3e-07
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	3e-06
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	9e-06
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	2e-04

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  117 bits (293), Expect = 2e-33
 Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 2/178 (1%)

Query: 41  SIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI 100
           +        + CGF+TG+GAA K  +V+ GS+  V GLG VGL  + G +  GA++IIGI
Sbjct: 1   AAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGI 60

Query: 101 DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 160
           D N  K EK  A G T+ I+P D         V     G  V Y FE  G    + +AL 
Sbjct: 61  DLNKDKFEKAMAVGATECISPKDSTK--PISEVLSEMTGNNVGYTFEVIGHLETMIDALA 118

Query: 161 TTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNK 218
           +  +  G  +V+GV     +      L   GRT KG  FGG+K++ D+P L+ +   K
Sbjct: 119 SCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  111 bits (279), Expect = 3e-31
 Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 5/174 (2%)

Query: 47  ASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWK 106
           +  + CGF TG+GAA   A+V  GS+ AV GLG VG  A+ G +  GA++IIG+  +  K
Sbjct: 5   SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK 64

Query: 107 KEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 166
             K    G T+ +NP D  +K I E++   T+G GVDY  EC G    +  AL++T  G 
Sbjct: 65  FPKAIELGATECLNPKDY-DKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGS 122

Query: 167 GKVIVIGVGV-DTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKE 219
           G  +V+G+   +  +PL+ + L   GR+LKG+ FGG K + ++  L+D    K+
Sbjct: 123 GVTVVLGLASPNERLPLDPLLLL-TGRSLKGSVFGGFKGE-EVSRLVDDYMKKK 174

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  111 bits (277), Expect = 5e-31
 Identities = 67/177 (37%), Positives = 94/177 (53%), Gaps = 4/177 (2%)

Query: 43  DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK 102
           +L     + CGF++G+GAA   A+V  GS+ AV GLG VGL A+ G ++ GA++II ID 
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 103 NPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT 162
           N  K  K +A G TD +NP +                 GVDY  +C G    L  A++ T
Sbjct: 62  NGEKFPKAKALGATDCLNPRELDKPVQDV--ITELTAGGVDYSLDCAGTAQTLKAAVDCT 119

Query: 163 KVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKE 219
            +G G   V+G  VD M    V  +   GR++ GT FGG K+   +P L+   KNK+
Sbjct: 120 VLGWGSCTVVGAKVDEMTIPTVDVIL--GRSINGTFFGGWKSVDSVPNLVSDYKNKK 174

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  107 bits (267), Expect = 2e-29
 Identities = 67/176 (38%), Positives = 97/176 (55%), Gaps = 2/176 (1%)

Query: 44  LSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN 103
           L     + CGF+TG+G+A K A+V +GS+ AV GLG VGL  + G +  GAA+IIG+D N
Sbjct: 3   LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 62

Query: 104 PWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 163
             K  K +  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL   +
Sbjct: 63  KDKFAKAKEVGATECVNPQDYK-KPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQ 120

Query: 164 VGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKE 219
              G  +++GV  D+        L   GRT KG  FGG K+K  +P L+     K+
Sbjct: 121 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  103 bits (257), Expect = 4e-28
 Identities = 67/176 (38%), Positives = 92/176 (52%), Gaps = 2/176 (1%)

Query: 44  LSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN 103
           L     L CG +TG+GAA   A++E GS  AV GLG VGL  + G ++ GA++IIG+D N
Sbjct: 3   LDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN 62

Query: 104 PWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 163
             K  + + FG T+ INP D        L++      GVDY FEC G   ++  ALE   
Sbjct: 63  KDKFARAKEFGATECINPQDFSKPIQEVLIE--MTDGGVDYSFECIGNVKVMRAALEACH 120

Query: 164 VGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKE 219
            G G  +V+GV                GRT KGT FGG K+   +P L+ +  +K+
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 97.3 bits (241), Expect = 9e-26
 Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 6/173 (3%)

Query: 42  IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID 101
           + +     L CG  TG GA     +V   SS    G G VGL A+  A++ GA+ II +D
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 161
               + E  +  G T  IN   +        +K IT G GV++  E TG P +L + ++ 
Sbjct: 61  IVESRLELAKQLGATHVINSKTQ---DPVAAIKEITDG-GVNFALESTGSPEILKQGVDA 116

Query: 162 TKVGKGKVIVIGVG-VDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD 213
             +  GK+ V+G   + T    +V  L  GG+T+ G   G    K  +P L+ 
Sbjct: 117 LGI-LGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVR 168

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 92.0 bits (227), Expect = 1e-23
 Identities = 72/176 (40%), Positives = 94/176 (53%), Gaps = 3/176 (1%)

Query: 44  LSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN 103
           L     L CG +TGFGAA   A+VE GS+ AV GLG VGL AV G    GA +II +D N
Sbjct: 3   LDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN 62

Query: 104 PWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 163
           P K EK + FG TDF+NP+D        L K    G+  D+  EC G   ++  ALE+  
Sbjct: 63  PDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV--DFSLECVGNVGVMRNALESCL 120

Query: 164 VGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKE 219
            G G  +++G      V    I L   GRT KG+ FGG K K  +P ++    +K+
Sbjct: 121 KGWGVSVLVGWTDLHDVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 83.4 bits (205), Expect = 2e-20
 Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 42  IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID 101
           + L +A  ++   TTGF  A + A++E GSSV V+G+G VGL  + GA+++GA +IIG+ 
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 161
             P   E  + +G TD +N  +   +   + V  +T+G GVD      G    LS+A++ 
Sbjct: 60  SRPICVEAAKFYGATDILNYKNGHIE---DQVMKLTNGKGVDRVIMAGGGSETLSQAVKM 116

Query: 162 TKVGKGKVIVIGV-GVDTMVPLNVIALACG--GRTLKGTTFGGIKTKSDLPILL 212
            K G G +  I   G    + +  +   CG   +T+KG    G + +++    +
Sbjct: 117 VKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERLRDM 169

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 69.6 bits (169), Expect = 3e-15
 Identities = 47/174 (27%), Positives = 66/174 (37%), Gaps = 3/174 (1%)

Query: 43  DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK 102
           DL   +   C   T + A  +  E   G +V + G G +GL  V  AR  GA  +I I  
Sbjct: 2   DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG 61

Query: 103 NPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT 162
           +P + +  E  G    +N  +   +   + +  ITHG G D+  E TG    L E  E  
Sbjct: 62  SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELL 121

Query: 163 KVGKGKVIVIGVGV-DTMVPLNVIALACG-GRTLKGTTFGGIKTKSDLPILLDK 214
           + G G   V GV V    VP  V         T KG              +  +
Sbjct: 122 RRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSR 174

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 69.5 bits (169), Expect = 4e-15
 Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 29/195 (14%)

Query: 44  LSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN 103
           +   + LS    TG+  A   A V  GS+V V G G VGL A   AR+ GAA +I  D N
Sbjct: 1   IRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59

Query: 104 PWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV------------ 151
           P +    +A G        D P   + E +  +     VD   +  G             
Sbjct: 60  PARLAHAKAQGFEIADLSLDTP---LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKH 116

Query: 152 ---PSLLSEALETTKVGKGKVIVIGV-------GVDTMVPLNVIALACGGRTLKGTTFGG 201
               ++L+  ++ T+V  GK+ + G+        VD    +  +++  G    K  +F  
Sbjct: 117 EAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHT 175

Query: 202 IKT--KSDLPILLDK 214
            +T        L+  
Sbjct: 176 GQTPVMKYNRALMQA 190

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 62.7 bits (151), Expect = 8e-13
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 11/172 (6%)

Query: 43  DLSHASFLSCGFTTGFGAAWKEA-EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID 101
            L   + L+    T + A  K A  +  G+ VA++G+G +G  AV   ++   A +I +D
Sbjct: 5   KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALD 64

Query: 102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 161
               K +  E  G    ++   +P     + V  +T G GV+   +  G  + +      
Sbjct: 65  VKEEKLKLAERLGADHVVDARRDP----VKQVMELTRGRGVNVAMDFVGSQATVDYTPYL 120

Query: 162 TKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD 213
                G++I++G G +   P   +       + +G+  G      +L  L+ 
Sbjct: 121 LGRM-GRLIIVGYGGELRFPTIRVIS--SEVSFEGSLVGNYV---ELHELVT 166

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 1e-12
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 50  LSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK 109
           LS G       A +   V  G  V V G G +G+  +  A+  GAA+++  D +  +  K
Sbjct: 12  LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66

Query: 110 GEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKV 169
            +  G    +    E  + I+  V+    G   +   ECTG  + +   +  T+ G   V
Sbjct: 67  AKEIGADLVLQISKESPQEIARKVE-GQLGCKPEVTIECTGAEASIQAGIYATRSGGTLV 125

Query: 170 IVIGVGVDTMVPLNVIALACGGRTLKGT 197
           +V      T VPL   A+      +KG 
Sbjct: 126 LVGLGSEMTTVPLLHAAI--REVDIKGV 151

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 61.1 bits (147), Expect = 2e-12
 Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 14/179 (7%)

Query: 40  PSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIG 99
           P   L+  + L C   T +    +  +   G  V V+G+G +G            A ++ 
Sbjct: 2   PQEQLAAVAPLLCAGITTYSP-LRHWQAGPGKKVGVVGIGGLG-HMGIKLAHAMGAHVVA 59

Query: 100 IDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL 159
              +  K+E  +A G  + +N  +              H    D+       P  L +  
Sbjct: 60  FTTSEAKREAAKALGADEVVNSRNADEM--------AAHLKSFDFILNTVAAPHNLDDFT 111

Query: 160 ETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNK 218
              K   G + ++G          V  L    R + G+  GGI    +   +LD C   
Sbjct: 112 TLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIP---ETQEMLDFCAEH 166

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 17/76 (22%), Positives = 32/76 (42%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M    +R + +G+K+      ST+S+Y V++   V ++DPS+ L           +   A
Sbjct: 124 MSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDA 183

Query: 61  AWKEAEVEKGSSVAVL 76
                  +   +V  L
Sbjct: 184 IDLMKHGKCIRTVLSL 199

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSR + RG+ +Y++   ST++EY V+    V ++DP I+++               
Sbjct: 123 MADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL------ 176

Query: 61  AWKEAEVEKGSSVAVLGLGTVGL 83
                ++ K   +   G G   +
Sbjct: 177 ----DQINKAFELLSSGQGVRSI 195

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M D TSR + +G+ +YH    S++S+Y V+    + RVD   DL      +  F +   A
Sbjct: 127 MEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDA 186

Query: 61  AWKEAEVEKGSSVAVLG 77
                 +++G S+  + 
Sbjct: 187 I---DLMKEGKSIRTIL 200

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 52.4 bits (124), Expect = 4e-09
 Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 12/172 (6%)

Query: 42  IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID 101
           ++ +  + + C   T +    K+     G  VA+ G+G +G  AV  AR  G   +  ID
Sbjct: 1   VEFAEIAPILCAGVTVYK-GLKQTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAID 58

Query: 102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 161
            +  K E     G +  +N   E                G           S   +A+  
Sbjct: 59  IDDAKLELARKLGASLTVNARQEDPV-----EAIQRDIGGAHGVLVTAVSNSAFGQAIGM 113

Query: 162 TKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD 213
            + G    +V     D   P+  + L   G  + G+  G      DL   LD
Sbjct: 114 ARRGGTIALVGLPPGDFPTPIFDVVL--KGLHIAGSIVGTRA---DLQEALD 160

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + +G+ + H    ST+SEY V+    V ++DP I +      +  F     A
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKA 181

Query: 61  AWKEAEVEKGSSVAVL 76
                  +   +V  +
Sbjct: 182 FELMHSGKSIRTVVKI 197

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 1   MLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGA 60
           M DGTSR + RG+ ++H    ST+S+Y V+D   V ++D +  L     L          
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFAL---DPLITHVLPFEKI 179

Query: 61  AWKEAEVEKGSSVAVLG 77
                 +  G S+  + 
Sbjct: 180 NEGFDLLRSGESIRTIL 196

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 48.2 bits (113), Expect = 1e-07
 Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 12/180 (6%)

Query: 42  IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID 101
           +    A+ + C   T +  A K    + G  VA+ G+G +G  AV  A+  G   ++ +D
Sbjct: 1   LSFEEAAPIFCAGVTTYK-ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVD 58

Query: 102 KNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 161
               K E  +  G    +NP  E                GV               A  +
Sbjct: 59  IGDEKLELAKELGADLVVNPLKEDAAKFM-----KEKVGGVHAAVVTAVSKPAFQSAYNS 113

Query: 162 TKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKEFK 221
            + G   V+V     +  +P+    L   G  + G+  G   T+ DL   L      + K
Sbjct: 114 IRRGGACVLVGLPPEEMPIPIFDTVL--NGIKIIGSIVG---TRKDLQEALQFAAEGKVK 168

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 16  YHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAV 75
               S   ++ Y+ +  ++VV +  +I +        G    F    ++ +V    ++  
Sbjct: 127 DGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAF-ERMEKGDVRYRFTLVG 185

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 25/85 (29%)

Query: 16  YHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAV 75
            H F+ S+++ Y +   N  V+V                                  V  
Sbjct: 134 DHFFAQSSFATYALSRENNTVKVTKDFPFDQL-------------------------VKF 168

Query: 76  LGLGTVGLGAVDGARMQGAAKIIGI 100
                +   A+D  +      II I
Sbjct: 169 YAFDEINQAAIDSRKGITLKPIIKI 193

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 7/76 (9%), Positives = 20/76 (26%), Gaps = 7/76 (9%)

Query: 21  CSTWSEYMVIDAN--YVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL 78
               +EY+++      ++++           ++        +    A    G        
Sbjct: 131 TGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDD-APRGYG----EFDA 185

Query: 79  GTVGLGAVDGARMQGA 94
           G      +D  +   A
Sbjct: 186 GVPKKFVIDPHKTFSA 201

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 20/173 (11%), Positives = 51/173 (29%), Gaps = 10/173 (5%)

Query: 42  IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGID 101
           ++   A+ L+C   T + A  ++A ++   ++ V+G G              +   I   
Sbjct: 1   LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGV 59

Query: 102 KNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 160
               +  +  +  G    IN   +   +     +                  S  + ++ 
Sbjct: 60  DVREEAVEAAKRAGADYVINASMQDPLA-----EIRRITESKGVDAVIDLNNSEKTLSVY 114

Query: 161 TTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLD 213
              + K    V+       +  +   +        G+  G    +SD   ++ 
Sbjct: 115 PKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVG---NQSDFLGIMR 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.97
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.97
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.97
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.97
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.97
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.97
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.97
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.97
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.97
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.97
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.96
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.96
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.96
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.96
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.96
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.96
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.95
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.94
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.94
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.91
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.65
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.42
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.39
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.31
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.25
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.22
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.2
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.18
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.04
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.04
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.03
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.02
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.94
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.93
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	98.93
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.82
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.74
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	98.73
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.73
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	98.51
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.48
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.36
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	98.34
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	98.33
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.3
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.21
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.09
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.06
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.01
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.97
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.97
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.92
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.85
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.82
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.81
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.81
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.79
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.78
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.75
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.73
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	97.72
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.71
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.69
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.68
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.68
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.68
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.68
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.65
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.64
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.64
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.64
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.63
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.62
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.62
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.61
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.58
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.57
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.56
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.55
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.55
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.54
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.54
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.51
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.51
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.5
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.5
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.48
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.47
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.47
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.47
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.46
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.46
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.45
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.43
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.41
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.41
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.41
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.4
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.39
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.38
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.37
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.36
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.34
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.31
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.31
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.31
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.3
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.3
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.3
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.28
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.26
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.25
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.25
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.23
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.22
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.22
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.17
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.17
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.17
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.15
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.15
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.15
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.14
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.13
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.12
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.12
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.11
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.1
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.1
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.09
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.08
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.06
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.04
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.04
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.04
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.03
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.98
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.94
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.93
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.9
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.88
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.85
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.83
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.83
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.81
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.81
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.79
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.78
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.69
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.65
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.62
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.61
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.6
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.6
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.6
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.59
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.55
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.55
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.55
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.53
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.52
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.46
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.46
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.41
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.36
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.36
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.33
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.31
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	96.28
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.26
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.23
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.21
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.18
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.17
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.14
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.13
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.12
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.12
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.07
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.06
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.06
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	96.03
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.03
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.03
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.99
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.94
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.91
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	95.9
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.87
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.86
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.86
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.86
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	95.84
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.82
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.82
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.76
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.76
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.76
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	95.75
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.73
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.71
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.69
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.69
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.69
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.68
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.64
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.64
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	95.6
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	95.58
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.54
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.54
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.53
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	95.53
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.52
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.51
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.5
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.49
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.47
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	95.46
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.42
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.39
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.39
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.37
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.36
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.35
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.33
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.32
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.31
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	95.28
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	95.17
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.13
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	95.12
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.08
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.08
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	95.07
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.05
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.03
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.03
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	95.0
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	95.0
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	94.99
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	94.97
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.95
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.94
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.92
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.92
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.9
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.89
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	94.88
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.84
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.83
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.82
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.81
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.79
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.73
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.71
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.68
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.67
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	94.67
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.65
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	94.6
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.6
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	94.55
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.53
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.51
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.48
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.45
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.44
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.41
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	94.4
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.4
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.39
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.38
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.34
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.31
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	94.29
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.28
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.25
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.21
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.2
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.19
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.1
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.04
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.9
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	93.9
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	93.89
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	93.87
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.85
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	93.81
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.8
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.77
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.68
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.63
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	93.63
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	93.62
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.58
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.54
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.53
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.52
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.46
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	93.45
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.45
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.34
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.22
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.19
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.17
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	93.16
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.08
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.07
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.05
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.05
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	93.02
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.0
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.0
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	92.98
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.89
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	92.88
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.84
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	92.83
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.81
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.8
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.8
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.7
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.64
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.59
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.51
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.51
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	92.4
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.38
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.36
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.18
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.11
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.04
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.03
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.97
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	91.95
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	91.92
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	91.9
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	91.81
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.79
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.79
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.72
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	91.68
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.68
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	91.68
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.59
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.54
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	91.48
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	91.46
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.43
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.39
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.31
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	91.28
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	91.03
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.94
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.77
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.72
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	90.58
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	90.56
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.55
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.52
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.38
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	90.36
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	90.28
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	90.28
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	90.24
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	90.24
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.2
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	90.16
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	90.12
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	90.03
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.0
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	89.69
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	89.61
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	89.52
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	89.51
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	89.5
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	89.26
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	89.15
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	89.11
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	89.11
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	88.64
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	88.48
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	88.42
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	88.4
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.36
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.31
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.12
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	88.02
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	87.99
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.91
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	87.71
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	87.4
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.28
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	87.28
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	87.12
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.9
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.87
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	86.66
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	86.61
d1ls1a2	207	GTPase domain of the signal sequence recognition p	86.33
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	86.09
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	86.06
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	86.03
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	85.94
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	85.89
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	85.87
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	85.68
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	85.54
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.38
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	85.22
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	85.19
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	85.01
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.98
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	84.89
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	84.79
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	84.69
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	84.69
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.62
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	84.6
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	84.44
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	84.14
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	84.11
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	83.75
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	83.57
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	83.51
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	83.18
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	83.07
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	83.02
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	83.0
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	82.88
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.41
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	82.27
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	82.02
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	81.98
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	81.92
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	81.78
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	80.93
d1zn7a1	178	Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]	80.03

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=7.4e-33  Score=204.62  Aligned_cols=173  Identities=31%  Similarity=0.472  Sum_probs=157.9

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP  121 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~  121 (254)
                      ++++.++.++|++.|||+++.+..++++|++|+|+|+|++|++++|++|.+|+++|++++.+++|++.++++|+++++++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            35678999999999999999899999999999999999999999999999999778888999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecC
Q 025336          122 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFG  200 (254)
Q Consensus       122 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~  200 (254)
                      ++   +++.+++++++++ ++|++|||+|.+..++.++++++++ |+++.+|.... ...++++..++.++++++|+..+
T Consensus        81 ~~---~~~~~~i~~~t~g-g~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g  155 (174)
T d1f8fa2          81 KT---QDPVAAIKEITDG-GVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEG  155 (174)
T ss_dssp             TT---SCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGG
T ss_pred             CC---cCHHHHHHHHcCC-CCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEec
Confidence            88   8999999999887 9999999999988899999999999 99999998655 56788888988899999999877


Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025336          201 GIKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~  219 (254)
                      ++...++++++++++++|+
T Consensus       156 ~~~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         156 SGSPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             GSCHHHHHHHHHHHHHTTS
T ss_pred             CCChHHHHHHHHHHHHcCC
Confidence            6655677999999999986

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-32  Score=199.88  Aligned_cols=168  Identities=24%  Similarity=0.286  Sum_probs=149.7

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN  120 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~  120 (254)
                      +|+++||+++++++|||++|.+..++++|++|||+|+ |++|++++|++|.+|+ +|++++.++++.++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5899999999999999999988889999999999986 9999999999999999 8999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecC
Q 025336          121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG  200 (254)
Q Consensus       121 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~  200 (254)
                      +++   +++.+.+++.++++++|+++||+|++ .++.++++++++ |+++.+|..+  ..++++..++.+++++.|+.+.
T Consensus        80 ~~~---~~~~~~i~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~k~~~i~g~~~~  152 (174)
T d1yb5a2          80 HRE---VNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLSHG-GRVIVVGSRG--TIEINPRDTMAKESSIIGVTLF  152 (174)
T ss_dssp             TTS---TTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEEEE-EEEEECCCCS--CEEECTHHHHTTTCEEEECCGG
T ss_pred             ccc---ccHHHHhhhhhccCCceEEeecccHH-HHHHHHhccCCC-CEEEEEecCC--CCCCCHHHHHHCCCEEEEEEec
Confidence            998   99999999999998999999999976 899999999999 9999998754  4677778888899999998754


Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025336          201 GIKTKSDLPILLDKCKNK  218 (254)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~  218 (254)
                      .. ..+++++++++++++
T Consensus       153 ~~-~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         153 SS-TKEEFQQYAAALQAG  169 (174)
T ss_dssp             GC-CHHHHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHH
Confidence            32 245677777776553

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.97  E-value=1e-30  Score=192.63  Aligned_cols=173  Identities=36%  Similarity=0.618  Sum_probs=147.0

Q ss_pred             CccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           43 DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        43 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      +|.+||++.|++.|+|+++.+.+++++|++|||+|+|++|++++|++|.+|+.+|++++.+++|+++++++|+++++|++
T Consensus         1 ~P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~   80 (174)
T d1p0fa2           1 APLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPK   80 (174)
T ss_dssp             CCGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCC
Confidence            35679999999999999988889999999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCC
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGG  201 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~  201 (254)
                      +  .++....+.+.+.++++|++||++|.+..+...+..+.+++|+++.+|.... ..+++++..++ +++++.|+.+++
T Consensus        81 ~--~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~  157 (174)
T d1p0fa2          81 D--YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLL-TGRSLKGSVFGG  157 (174)
T ss_dssp             G--CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH-TTCEEEECSGGG
T ss_pred             C--chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHh-CCCEEEEEEeCC
Confidence            5  1334444445555559999999999988888899888663289999998765 66777766666 788999998776


Q ss_pred             CCCCCCHHHHHHHHhCCC
Q 025336          202 IKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~  219 (254)
                      +. .++++++++++++||
T Consensus       158 ~~-~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         158 FK-GEEVSRLVDDYMKKK  174 (174)
T ss_dssp             CC-GGGHHHHHHHHHTTS
T ss_pred             CC-HHHHHHHHHHHHcCC
Confidence            53 458999999999986

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.97  E-value=6.7e-31  Score=193.34  Aligned_cols=173  Identities=38%  Similarity=0.653  Sum_probs=149.2

Q ss_pred             CccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           43 DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        43 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      +++++|.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|++|.+|+++|++++.+++|++.++++|++++++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            46789999999999999988899999999999999999999999999999998899999999999999999999999876


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCC
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI  202 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  202 (254)
                      .  .++....+.+.+.+.++|++|||+|.+..++.+++++++++|+++.+|.+.+ ..++++..++ .+.+++|+..+++
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~-~~~i~~~~~~-~~k~i~Gs~~Gs~  157 (174)
T d1e3ia2          82 E--LDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVD-EMTIPTVDVI-LGRSINGTFFGGW  157 (174)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSS-EEEEEHHHHH-TTCEEEECSGGGC
T ss_pred             c--chhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCC-ccccchHHHh-ccCEEEEEEeeCC
Confidence            4  1334444554455559999999999998999999999983389999998765 6677777776 5779999998877


Q ss_pred             CCCCCHHHHHHHHhCCC
Q 025336          203 KTKSDLPILLDKCKNKE  219 (254)
Q Consensus       203 ~~~~~~~~~~~~~~~~~  219 (254)
                      ...++++++++++++||
T Consensus       158 ~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         158 KSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHHHHCcC
Confidence            77788999999999886

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.97  E-value=4.5e-31  Score=194.51  Aligned_cols=171  Identities=31%  Similarity=0.454  Sum_probs=148.2

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP  121 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~  121 (254)
                      +|+++|+.+++++.|+|+++ +.+++++|++|||+|+|++|++++|++|.+|+.+|++++.+++|.+.++++|+++++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            57899999999999999997 67999999999999999999999999999999789999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHH--HHhCCCEEEeee
Q 025336          122 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIA--LACGGRTLKGTT  198 (254)
Q Consensus       122 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~--~~~~~~~i~g~~  198 (254)
                      ++   +++.+.+++.+++.++|++|||+|++..++.++++++++ |+++.+|.+.. ...+++...  ...++.++.|+.
T Consensus        80 ~~---~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~  155 (174)
T d1jqba2          80 KN---GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGL  155 (174)
T ss_dssp             GG---SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBC
T ss_pred             cc---hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEec
Confidence            98   889999999999989999999999887899999999999 99999998765 444443322  334788999886


Q ss_pred             cCCCCCCCCHHHHHHHHhCCC
Q 025336          199 FGGIKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~  219 (254)
                      .+..  +..++++.++++.|+
T Consensus       156 ~~~~--r~~~e~l~~li~~gk  174 (174)
T d1jqba2         156 CPGG--RLRAERLRDMVVYNR  174 (174)
T ss_dssp             CCCH--HHHHHHHHHHHHTTS
T ss_pred             CCCC--cccHHHHHHHHHcCC
Confidence            5432  345677888888875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=5.4e-31  Score=194.09  Aligned_cols=169  Identities=21%  Similarity=0.269  Sum_probs=154.6

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN  120 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~  120 (254)
                      +|+.+||.++++++|||+++ ++.+++++++|+|+|+ |++|++++|+++..|+.+|++++++++|+++++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            57889999999999999998 7789999999999995 999999999999999779999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecC
Q 025336          121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG  200 (254)
Q Consensus       121 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~  200 (254)
                      +++   +++.+.+++.+.+.++|++|||+|++..++.++++++++ |+++.+|.... ..+++...++++++++.|++.+
T Consensus        80 ~~~---~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~k~i~i~Gs~~~  154 (170)
T d1jvba2          80 ASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGA-DLHYHAPLITLSEIQFVGSLVG  154 (170)
T ss_dssp             TTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCC-CCCCCHHHHHHHTCEEEECCSC
T ss_pred             cCC---cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEeccccC-ccccCHHHHHhCCcEEEEEecC
Confidence            988   889999999998889999999999988899999999999 99999998765 5788888888899999999855


Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025336          201 GIKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~  219 (254)
                      +   .++++++++++++||
T Consensus       155 ~---~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         155 N---QSDFLGIMRLAEAGK  170 (170)
T ss_dssp             C---HHHHHHHHHHHHTTS
T ss_pred             C---HHHHHHHHHHHHcCC
Confidence            3   577999999999986

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=2.3e-31  Score=198.57  Aligned_cols=173  Identities=18%  Similarity=0.252  Sum_probs=148.1

Q ss_pred             cccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCC
Q 025336           45 SHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDD  123 (254)
Q Consensus        45 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~  123 (254)
                      +|||++|++++|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            5799999999999999988889999999999986 9999999999999999 9999989999999999999999999998


Q ss_pred             CCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCCC
Q 025336          124 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGGI  202 (254)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~  202 (254)
                         +++.+.+++.++++++|++|||+|++ .++.++++++++ |+++.+|.... .........+ .+++++.++.....
T Consensus        80 ---~~~~~~v~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  153 (183)
T d1pqwa_          80 ---VDFADEILELTDGYGVDVVLNSLAGE-AIQRGVQILAPG-GRFIELGKKDVYADASLGLAAL-AKSASFSVVDLDLN  153 (183)
T ss_dssp             ---STHHHHHHHHTTTCCEEEEEECCCTH-HHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGGG-TTTCEEEECCHHHH
T ss_pred             ---cCHHHHHHHHhCCCCEEEEEecccch-HHHHHHHHhcCC-CEEEEEccCCCCCCcccchHHH-hCCcEEEEEEccce
Confidence               89999999999988999999999986 889999999999 99999987655 3333333333 48899888753321


Q ss_pred             C------CCCCHHHHHHHHhCCCCCCCC
Q 025336          203 K------TKSDLPILLDKCKNKEFKLHQ  224 (254)
Q Consensus       203 ~------~~~~~~~~~~~~~~~~~~~~~  224 (254)
                      .      ..+.++++++++++|++++.|
T Consensus       154 ~~~~~~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         154 LKLQPARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             eccCHHHHHHHHHHHHHHHHCCCCceeC
Confidence            1      134578888999999977654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.4e-30  Score=193.87  Aligned_cols=173  Identities=28%  Similarity=0.337  Sum_probs=147.7

Q ss_pred             CccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           43 DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        43 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      +++.+|.++|+++|||+++.+..++++|++|||+|+|++|++++|+++++|+++|+++++++++++.++++|++++++++
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~   81 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRR   81 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEecc
Confidence            34567788899999999998888999999999999999999999999999987899999999999999999999999998


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHH-HHhCCCEEEeeecC
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIA-LACGGRTLKGTTFG  200 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~-~~~~~~~i~g~~~~  200 (254)
                      +.+..+..+.+.+.+++.++|+||||+|++..++.++++++++ |+++.+|...+ ..++++... +++|++++.|++.+
T Consensus        82 ~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~  160 (182)
T d1vj0a2          82 ETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVS  160 (182)
T ss_dssp             TSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCC
T ss_pred             ccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeC
Confidence            7223344556778888889999999999987899999999999 99999997655 566666544 66799999998754


Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025336          201 GIKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~  219 (254)
                         +..++++++++++++.
T Consensus       161 ---~~~~~~~~~~~i~~~~  176 (182)
T d1vj0a2         161 ---DTSHFVKTVSITSRNY  176 (182)
T ss_dssp             ---CHHHHHHHHHHHHTCH
T ss_pred             ---CHHHHHHHHHHHHHCh
Confidence               3567889999988763

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-29  Score=186.64  Aligned_cols=169  Identities=20%  Similarity=0.375  Sum_probs=146.2

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP  121 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~  121 (254)
                      +|+++||++ .++.+||+++ ++.++++|++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++++
T Consensus         1 vS~e~Aal~-epla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHH-HHHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            478898866 7889999997 68899999999999999999999999999999889999999999999999999999988


Q ss_pred             CCCCCchHHHHHHHh--hCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeec
Q 025336          122 DDEPNKSISELVKGI--THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTF  199 (254)
Q Consensus       122 ~~~~~~~~~~~i~~~--~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~  199 (254)
                      ++   ++..+..+.+  +.+.++|++|||+|++..++.++++++++ |+++.+|.+.. ..++++..++.|+++++|++.
T Consensus        79 ~~---~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~~-~~~~~~~~~~~k~l~i~Gs~~  153 (171)
T d1pl8a2          79 SK---ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSE-MTTVPLLHAAIREVDIKGVFR  153 (171)
T ss_dssp             SS---CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCS-CCCCCHHHHHHTTCEEEECCS
T ss_pred             cc---cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCCC-CCccCHHHHHHCCcEEEEEeC
Confidence            76   5444433332  23459999999999998899999999999 99999998765 567888888889999999852


Q ss_pred             CCCCCCCCHHHHHHHHhCCCCC
Q 025336          200 GGIKTKSDLPILLDKCKNKEFK  221 (254)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~  221 (254)
                          ..++++++++++++|+++
T Consensus       154 ----~~~~~~~al~li~~gkid  171 (171)
T d1pl8a2         154 ----YCNTWPVAISMLASKSVN  171 (171)
T ss_dssp             ----CSSCHHHHHHHHHTTSCC
T ss_pred             ----CHhHHHHHHHHHHcCCCC
Confidence                246799999999999964

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.97  E-value=5.1e-30  Score=189.96  Aligned_cols=173  Identities=40%  Similarity=0.664  Sum_probs=144.0

Q ss_pred             CccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           43 DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        43 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      ++++||.++|++.|+|+++.+++++++|++|||+|+|++|++++|+++.+|+++|++++++++|++.++++|++++++++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            57889999999999999998889999999999999999999999999999987899999999999999999999999886


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC--ceeeccHHHHHhCCCEEEeeecC
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--TMVPLNVIALACGGRTLKGTTFG  200 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~~i~g~~~~  200 (254)
                      + ..++..+.+++.+++ ++|++||++|.+..++.+..+++++ |+++.++....  ......+..++ ++.++.|+..+
T Consensus        82 ~-~~~~~~~~~~~~~~~-g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~-~~~~i~Gs~~G  157 (176)
T d2fzwa2          82 D-FSKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLV-TGRTWKGTAFG  157 (176)
T ss_dssp             G-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGG
T ss_pred             c-hhhHHHHHHHHHcCC-CCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHH-CCCEEEEEeee
Confidence            4 224455555555544 9999999999988889999999988 88777654443  33333344444 88999999988


Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025336          201 GIKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~  219 (254)
                      ++...+++.++++++++||
T Consensus       158 ~~~~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         158 GWKSVESVPKLVSEYMSKK  176 (176)
T ss_dssp             GCCHHHHHHHHHHHHHTTS
T ss_pred             CCcHHHHHHHHHHHHHcCC
Confidence            7766778999999999886

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=7.1e-30  Score=187.34  Aligned_cols=166  Identities=21%  Similarity=0.310  Sum_probs=147.5

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP  121 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~  121 (254)
                      ++++++|.++++++|||+++ ++.++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|+++++++|+++++++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            57899999999999999998 57899999999999999999999999999998 99999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCC
Q 025336          122 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG  201 (254)
Q Consensus       122 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~  201 (254)
                      ++   ++..+.+.+.+.  +++.++++++++..++.++++++++ |+++.+|.+.+ ..+++...++.+++++.|+..++
T Consensus        79 ~~---~~~~~~~~~~~~--g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~k~~~i~Gs~~~~  151 (166)
T d1llua2          79 RQ---EDPVEAIQRDIG--GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPPG-DFPTPIFDVVLKGLHIAGSIVGT  151 (166)
T ss_dssp             TT---SCHHHHHHHHHS--SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCSS-EEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---hhHHHHHHHhhc--CCcccccccccchHHHHHHHHhcCC-cEEEEEEecCC-CccCCHHHHHhCCcEEEEEeecC
Confidence            88   888888887664  5666677777777899999999999 99999998765 67788888889999999987543


Q ss_pred             CCCCCCHHHHHHHHhCCC
Q 025336          202 IKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~  219 (254)
                         .++++++++++++|.
T Consensus       152 ---~~d~~e~l~l~~~Gl  166 (166)
T d1llua2         152 ---RADLQEALDFAGEGL  166 (166)
T ss_dssp             ---HHHHHHHHHHHHTTS
T ss_pred             ---HHHHHHHHHHHHCcC
Confidence               567999999998873

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.97  E-value=6.4e-30  Score=188.63  Aligned_cols=172  Identities=37%  Similarity=0.610  Sum_probs=148.0

Q ss_pred             CccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           43 DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        43 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      ++++|+.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++++|+.+|++++.+++|++.++++|+++++|++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~   82 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK   82 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence            57899999999999999988889999999999999999999999999999987999999999999999999999999987


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCC
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGG  201 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~  201 (254)
                      +  .++..+.+.+.+.+.++|+++|++|.+..+..++..+.+++|+++.+|.+.. ....+++..++ ++.+++|+..++
T Consensus        83 ~--~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~  159 (176)
T d1d1ta2          83 D--STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLF-TGRTWKGCVFGG  159 (176)
T ss_dssp             G--CSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGG
T ss_pred             c--cchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHh-CCCEEEEEEEeC
Confidence            6  1334566667777779999999999988888888877654489999998776 55667666666 789999999887


Q ss_pred             CCCCCCHHHHHHHHhC
Q 025336          202 IKTKSDLPILLDKCKN  217 (254)
Q Consensus       202 ~~~~~~~~~~~~~~~~  217 (254)
                      ....++++++++++.+
T Consensus       160 ~~~~~dip~li~~~~~  175 (176)
T d1d1ta2         160 LKSRDDVPKLVTEFLA  175 (176)
T ss_dssp             CCHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhC
Confidence            7667788888887654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=2.3e-29  Score=185.04  Aligned_cols=168  Identities=22%  Similarity=0.357  Sum_probs=149.8

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP  121 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~  121 (254)
                      +|+++||+++++++|||+++ ...++++|++|||+|+|++|++++|+++..|+ +|++++++++|+++++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            58999999999999999998 57889999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCC
Q 025336          122 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG  201 (254)
Q Consensus       122 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~  201 (254)
                      ++   +++.+.+++.+.  +.+.++++.+++..++.++++++++ |+++.+|.... ..+++...++.+++++.|+..+ 
T Consensus        79 ~~---~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~~~-~~~~~~~~~~~~~~~i~gs~~~-  150 (168)
T d1rjwa2          79 LK---EDAAKFMKEKVG--GVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE-EMPIPIFDTVLNGIKIIGSIVG-  150 (168)
T ss_dssp             TT---SCHHHHHHHHHS--SEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS-EEEEEHHHHHHTTCEEEECCSC-
T ss_pred             cc---chhhhhcccccC--CCceEEeecCCHHHHHHHHHHhccC-CceEecccccC-CCCCCHHHHHHCCcEEEEEeeC-
Confidence            98   889999998886  4455556667677899999999999 99999998766 6677888888899999998754 


Q ss_pred             CCCCCCHHHHHHHHhCCCCC
Q 025336          202 IKTKSDLPILLDKCKNKEFK  221 (254)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~  221 (254)
                        ..++++++++++++|+++
T Consensus       151 --~~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         151 --TRKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             --CHHHHHHHHHHHHTTSCC
T ss_pred             --CHHHHHHHHHHHHhCCCC
Confidence              356799999999999964

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=1.6e-29  Score=186.40  Aligned_cols=166  Identities=21%  Similarity=0.283  Sum_probs=145.9

Q ss_pred             ccccccccchhhhhhHHHHHhc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           44 LSHASFLSCGFTTGFGAAWKEA-EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        44 ~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      +.++|+++++++|||+++.+.. .+++|++|||+|+|++|++++|+++.+|+.+|++++.+++|++.++++|++++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            5678899999999999997655 479999999999999999999999999987889999999999999999999999987


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCC
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI  202 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  202 (254)
                      +   + ..+.+.+.+.+.++|++|||+|++..++.++++++++ |+++.+|...  ..++++..++.+++++.|++.++ 
T Consensus        86 ~---~-~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~--~~~~~~~~l~~k~~~i~Gs~~~~-  157 (172)
T d1h2ba2          86 R---D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGG--ELRFPTIRVISSEVSFEGSLVGN-  157 (172)
T ss_dssp             S---C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCSS--CCCCCHHHHHHTTCEEEECCSCC-
T ss_pred             c---c-HHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCcc--cccCCHHHHHhCCcEEEEEEecC-
Confidence            5   4 4455666777779999999999987899999999999 9999999653  46788888888999999998654 


Q ss_pred             CCCCCHHHHHHHHhCCC
Q 025336          203 KTKSDLPILLDKCKNKE  219 (254)
Q Consensus       203 ~~~~~~~~~~~~~~~~~  219 (254)
                        .++++++++++++||
T Consensus       158 --~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         158 --YVELHELVTLALQGK  172 (172)
T ss_dssp             --HHHHHHHHHHHHTTS
T ss_pred             --HHHHHHHHHHHHcCC
Confidence              567999999999986

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=5.3e-30  Score=188.03  Aligned_cols=170  Identities=18%  Similarity=0.145  Sum_probs=136.7

Q ss_pred             CCccccccccchhhhhhHH---HHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce
Q 025336           42 IDLSHASFLSCGFTTGFGA---AWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD  117 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~---l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~  117 (254)
                      +|++|||++|++++|||++   |.+.++.++|++|||+|+ |++|.+++|++|.+|+ +|+++.+++++.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            6899999999999999966   445688999999999986 9999999999999999 9999999999999999999999


Q ss_pred             EeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEee
Q 025336          118 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT  197 (254)
Q Consensus       118 v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~  197 (254)
                      ++++++    ...+.++ .+++.++|+|||++|+. .+..++++++++ |+++.+|...+...+++...++.|++++.|.
T Consensus        80 vi~~~~----~~~~~~~-~~~~~gvD~vid~vgg~-~~~~~l~~l~~~-Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv  152 (176)
T d1xa0a2          80 VLARED----VMAERIR-PLDKQRWAAAVDPVGGR-TLATVLSRMRYG-GAVAVSGLTGGAEVPTTVHPFILRGVSLLGI  152 (176)
T ss_dssp             EEECC--------------CCSCCEEEEEECSTTT-THHHHHHTEEEE-EEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred             eeecch----hHHHHHH-HhhccCcCEEEEcCCch-hHHHHHHHhCCC-ceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence            998864    3444444 44556999999999998 799999999999 9999999987766778888888899999997


Q ss_pred             ecCCCCCCCCHHHHHHHHhCCCCC
Q 025336          198 TFGGIKTKSDLPILLDKCKNKEFK  221 (254)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~  221 (254)
                      .... ...+...++++.+. +.++
T Consensus       153 ~~~~-~~~~~~~~~~~~la-g~lk  174 (176)
T d1xa0a2         153 DSVY-CPMDLRLRIWERLA-GDLK  174 (176)
T ss_dssp             CSSS-CCHHHHHHHHHHHH-TTTC
T ss_pred             eCCc-CCHHHHHHHHHHHh-cccC
Confidence            5332 22344555555553 5543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.96  E-value=9.7e-29  Score=181.95  Aligned_cols=168  Identities=23%  Similarity=0.403  Sum_probs=141.3

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP  121 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~  121 (254)
                      +|+++||++ .++++||+++ ++.++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|.++++++|++.+++.
T Consensus         1 VS~e~Aal~-ePla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHH-HHHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            478898876 6888999998 68899999999999999999999999999999 99999999999999999999876644


Q ss_pred             CCC--CCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeec
Q 025336          122 DDE--PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTF  199 (254)
Q Consensus       122 ~~~--~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~  199 (254)
                      +..  +..+..+.+.+.. +.++|++|||+|++..++.++++++++ |+++.+|.+.. ..++++..++.+++++.|++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~-g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~-~~~~~~~~~~~k~i~i~gs~~  154 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAI-GDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQ-MVTVPLVNACAREIDIKSVFR  154 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHS-SSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSS-CCCCCHHHHHTTTCEEEECCS
T ss_pred             cccccccchhhhhhhccc-ccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCCC-CCCcCHHHHHHCCCEEEEEEC
Confidence            431  1123334444443 459999999999988899999999999 99999998765 567888889999999999852


Q ss_pred             CCCCCCCCHHHHHHHHhCCC
Q 025336          200 GGIKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~  219 (254)
                          +.++++++++++++|+
T Consensus       155 ----~~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         155 ----YCNDYPIALEMVASGR  170 (170)
T ss_dssp             ----CSSCHHHHHHHHHTTS
T ss_pred             ----CHHHHHHHHHHHHcCC
Confidence                3467999999999986

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.3e-30  Score=189.97  Aligned_cols=171  Identities=21%  Similarity=0.211  Sum_probs=140.1

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN  120 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~  120 (254)
                      +|+++||+++++++|||++|.+..++++|++|||+|+ |++|++++|+||..|+ +|++++++++++++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5899999999999999999988889999999999976 8899999999999999 9999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHh-CCCEEEeeec
Q 025336          121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALAC-GGRTLKGTTF  199 (254)
Q Consensus       121 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~  199 (254)
                      +++   +++.+.+++++++.++|+++|+++++ .+..++.+++++ |+++.++........++...+.. ..+.+....+
T Consensus        80 ~~~---~d~~~~v~~~t~g~g~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l  154 (179)
T d1qora2          80 YRE---EDLVERLKEITGGKKVRVVYDSVGRD-TWERSLDCLQRR-GLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSL  154 (179)
T ss_dssp             TTT---SCHHHHHHHHTTTCCEEEEEECSCGG-GHHHHHHTEEEE-EEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCH
T ss_pred             CCC---CCHHHHHHHHhCCCCeEEEEeCccHH-HHHHHHHHHhcC-CeeeecccccCCccccchhhhhccceEEEEeeEE
Confidence            998   99999999999998999999999987 789999999999 99999988776444444444443 3444443332


Q ss_pred             CCCC-CC----CCHHHHHHHHhCC
Q 025336          200 GGIK-TK----SDLPILLDKCKNK  218 (254)
Q Consensus       200 ~~~~-~~----~~~~~~~~~~~~~  218 (254)
                      ..+. ..    +.+.++++++++|
T Consensus       155 ~~~~~~~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         155 QGYITTREELTEASNELFSLIASG  178 (179)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHTT
T ss_pred             eeecCCHHHHHHHHHHHHHHHHCc
Confidence            2111 11    2234556666655

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.96  E-value=7.6e-29  Score=183.48  Aligned_cols=174  Identities=38%  Similarity=0.617  Sum_probs=143.1

Q ss_pred             CccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           43 DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        43 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      ++++||.++|++.|+|+++.+.+++++|++|||+|+|++|++++++++..|+.+|++++++++|++.++++|++++++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            57889999999999999998899999999999999999999999999999988999999999999999999999999876


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeeccHHHHHhCCCEEEeeecCC
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPLNVIALACGGRTLKGTTFGG  201 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~  201 (254)
                      +  .++......+.+.+.++|++||++|.+..++.++..+++++|.++..+.... ......+..++ +++++.|+..++
T Consensus        82 ~--~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~  158 (176)
T d2jhfa2          82 D--YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLL-SGRTWKGAIFGG  158 (176)
T ss_dssp             G--CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGG
T ss_pred             C--chhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHh-CCCEEEEEEEeC
Confidence            4  1344444555555559999999999998889999999887244444444444 33444444444 999999998887


Q ss_pred             CCCCCCHHHHHHHHhCCC
Q 025336          202 IKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~  219 (254)
                      ....++++++++++.+||
T Consensus       159 ~~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         159 FKSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHCcC
Confidence            666778999999999886

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.96  E-value=2.9e-29  Score=186.61  Aligned_cols=165  Identities=18%  Similarity=0.116  Sum_probs=142.4

Q ss_pred             ccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC
Q 025336           48 SFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        48 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                      ++++++++|||++|.+..++++|++|||+|+ |++|++++|++|..|+ +|+++++++++.++++++|+++++++++   
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~---   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT---   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc---
Confidence            4577899999999999999999999999987 8999999999999999 9999999999999999999999999998   


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC------ceeeccHHHHHhCCCEEEeeecC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD------TMVPLNVIALACGGRTLKGTTFG  200 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~i~g~~~~  200 (254)
                      +++.+.+.+.+.+.++|+||||+|++ .++.++++++++ |+++.+|....      ....+++..++++++++.|++..
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D~vG~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~  161 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFDNVGGE-FLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY  161 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGG
T ss_pred             ccHHHHHHHHhhcCCCceeEEecCch-hhhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEe
Confidence            88888888888888999999999976 889999999999 99999996432      23446677788899999999866


Q ss_pred             CCCC---CCCHHHHHHHHhCC
Q 025336          201 GIKT---KSDLPILLDKCKNK  218 (254)
Q Consensus       201 ~~~~---~~~~~~~~~~~~~~  218 (254)
                      .+..   .+.++++++++++|
T Consensus       162 ~~~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         162 RWQGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             GCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccChHHHHHHHHHHHHHHhCc
Confidence            5432   23467777887765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.96  E-value=8.4e-29  Score=183.14  Aligned_cols=174  Identities=40%  Similarity=0.613  Sum_probs=144.0

Q ss_pred             CccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           43 DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        43 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      ++++||.++|++.|+|+++.+.+++++|++|+|+|+|++|++++++++..|..+|++++++++|++.++++|+++++|++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            57889999999999999998889999999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCC
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGI  202 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  202 (254)
                      +  ..+..+.+.+.+.+.++|+++|++|++..++.+..++.++++.++..+.... ....+...++.+++++.|+..+++
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~i~Gs~~G~~  158 (175)
T d1cdoa2          82 D--HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL-HDVATRPIQLIAGRTWKGSMFGGF  158 (175)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS-SCEEECHHHHHTTCEEEECSGGGC
T ss_pred             C--cchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCC-cccCccHHHHHCCcEEEEEEEeCC
Confidence            5  1345566666666669999999999987888989988876244444554443 233333344458999999988877


Q ss_pred             CCCCCHHHHHHHHhCCC
Q 025336          203 KTKSDLPILLDKCKNKE  219 (254)
Q Consensus       203 ~~~~~~~~~~~~~~~~~  219 (254)
                      ..+++++++++++++||
T Consensus       159 ~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         159 KGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            66788999999999886

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1e-29  Score=186.96  Aligned_cols=148  Identities=22%  Similarity=0.312  Sum_probs=124.9

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN  120 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~  120 (254)
                      +|++|||+++++++|||+++ ++.++++|++|||+|+ |++|++++|++|..|+ +|+++++++++.+.++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            58999999999999999998 5689999999999986 9999999999999999 9999999999999999999999998


Q ss_pred             CCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecC
Q 025336          121 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG  200 (254)
Q Consensus       121 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~  200 (254)
                      +.+        ...+.+.+.++|++|||+|.  .++.++++++++ |+++.+|...+...++++..++.|++++.|++..
T Consensus        79 ~~~--------~~~~~~~~~g~D~v~d~~G~--~~~~~~~~l~~~-G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~  147 (171)
T d1iz0a2          79 YAE--------VPERAKAWGGLDLVLEVRGK--EVEESLGLLAHG-GRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLT  147 (171)
T ss_dssp             GGG--------HHHHHHHTTSEEEEEECSCT--THHHHHTTEEEE-EEEEEC-------CCCCTTHHHHTTCEEEECCHH
T ss_pred             hhh--------hhhhhhccccccccccccch--hHHHHHHHHhcC-CcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCc
Confidence            764        23445556699999999884  579999999999 9999999876655677778888899999999765


Q ss_pred             CC
Q 025336          201 GI  202 (254)
Q Consensus       201 ~~  202 (254)
                      .+
T Consensus       148 ~~  149 (171)
T d1iz0a2         148 PL  149 (171)
T ss_dssp             HH
T ss_pred             Ch
Confidence            44

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7.4e-29  Score=182.05  Aligned_cols=165  Identities=21%  Similarity=0.359  Sum_probs=138.0

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINP  121 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~  121 (254)
                      .+++++|.++|+..|+|+++ ++.++++|++|+|+|+|++|++++|++|.+|+ ++++++.+++++++++++|+++++++
T Consensus         4 ~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~   81 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNS   81 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred             ccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEEC
Confidence            45677888889999999998 68999999999999999999999999999999 88889999999999999999999998


Q ss_pred             CCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCC
Q 025336          122 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGG  201 (254)
Q Consensus       122 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~  201 (254)
                      .+   ++...     ...+++|++|||+|.+..++.++++++++ |+++.+|...+....++...++++++++.|+..++
T Consensus        82 ~~---~~~~~-----~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~  152 (168)
T d1uufa2          82 RN---ADEMA-----AHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG  152 (168)
T ss_dssp             TC---HHHHH-----TTTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC-------CHHHHHTTTCEEEECCSCC
T ss_pred             ch---hhHHH-----HhcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccCCCCcccccHHHHHHCCcEEEEEeecC
Confidence            86   44322     23458999999999887899999999999 99999998665445667778888999999998553


Q ss_pred             CCCCCCHHHHHHHHhCCCC
Q 025336          202 IKTKSDLPILLDKCKNKEF  220 (254)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~  220 (254)
                         ..+++++++++++++|
T Consensus       153 ---~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         153 ---IPETQEMLDFCAEHGI  168 (168)
T ss_dssp             ---HHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHcCC
Confidence               5778999999987763

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.96  E-value=2.1e-29  Score=188.35  Aligned_cols=175  Identities=13%  Similarity=0.115  Sum_probs=141.0

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCCeEEEEcCCccc----HHHHHhcCC
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL-GL-GTVGLGAVDGARMQGAAKIIGIDKNPWK----KEKGEAFGM  115 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~----~~~~~~~g~  115 (254)
                      +|+++||+++++++|||++|.+..++++|++|+|+ |+ |++|++++|+||.+|+ +|+++.+++++    .+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            58999999999999999999888999999999997 55 9999999999999999 88888766543    456788999


Q ss_pred             ceEeCCCCCCCchHHHHHHHhh--CCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCE
Q 025336          116 TDFINPDDEPNKSISELVKGIT--HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRT  193 (254)
Q Consensus       116 ~~v~~~~~~~~~~~~~~i~~~~--~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  193 (254)
                      ++++++++.+..++.+.+++++  .+.++|++||++|++ .+..++++++++ |+++.+|...+.+.+++...+++|+++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~l~~k~~~  157 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGK-SSTGIARKLNNN-GLMLTYGGMSFQPVTIPTSLYIFKNFT  157 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHH-HHHHHHHTSCTT-CEEEECCCCSSCCEEECHHHHHHSCCE
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcc-hhhhhhhhhcCC-cEEEEECCccCCCccCcHHHHHHCCcE
Confidence            9999875422244555555543  345899999999987 789999999999 999999977666678888888889999


Q ss_pred             EEeeecCCCCC------CCCHHHHHHHHhCCC
Q 025336          194 LKGTTFGGIKT------KSDLPILLDKCKNKE  219 (254)
Q Consensus       194 i~g~~~~~~~~------~~~~~~~~~~~~~~~  219 (254)
                      +.|++++.+..      .+.++++++++++|+
T Consensus       158 i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         158 SAGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             EEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            99987543321      234677777777764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.7e-29  Score=183.60  Aligned_cols=165  Identities=20%  Similarity=0.268  Sum_probs=137.8

Q ss_pred             CccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           43 DLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        43 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      +.+.||.++|++.|+|+++ ++.++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|+++++++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence            4467888999999999998 57899999999999999999999999999999 899999999999999999999999876


Q ss_pred             CCCCchHHHHHHHhhCCCCccEEEEcCCChh--HHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecC
Q 025336          123 DEPNKSISELVKGITHGMGVDYCFECTGVPS--LLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFG  200 (254)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~  200 (254)
                      +  ..++.+   ..  ..++|.++||++...  .++.++++++++ |+++.+|.+.. ..+++...++.+++++.|+..+
T Consensus        80 ~--~~~~~~---~~--~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~k~~~i~Gs~~g  150 (168)
T d1piwa2          80 E--EGDWGE---KY--FDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALG  150 (168)
T ss_dssp             G--TSCHHH---HS--CSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS-SCCEEECGGGCBSCEEEECCCC
T ss_pred             c--hHHHHH---hh--hcccceEEEEecCCccchHHHHHHHhhcc-ceEEEeccccc-cccccHHHHHhCCcEEEEEeeC
Confidence            4  123322   22  238999999988643  367889999999 99999998765 3455566677799999998765


Q ss_pred             CCCCCCCHHHHHHHHhCCCCC
Q 025336          201 GIKTKSDLPILLDKCKNKEFK  221 (254)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~  221 (254)
                      +   .++++++++++++|+++
T Consensus       151 ~---~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         151 S---IKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             C---HHHHHHHHHHHHHTTCC
T ss_pred             C---HHHHHHHHHHHHhCCCC
Confidence            3   57899999999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=4.3e-26  Score=170.47  Aligned_cols=167  Identities=25%  Similarity=0.266  Sum_probs=140.7

Q ss_pred             cccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCC
Q 025336           45 SHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDE  124 (254)
Q Consensus        45 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~  124 (254)
                      ++.++++.++.|||+++ +++++++|++|||+|+|++|++++++++..|+.+|++++.+++|++.++++|+++++++.+ 
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence            45677889999999997 6899999999999999999999999999999989999999999999999999999999988 


Q ss_pred             CCchHHHHHHHhhCCCCccEEEEcCCC---------------hhHHHHHHHHcccCCcEEEEEccCCC-c----------
Q 025336          125 PNKSISELVKGITHGMGVDYCFECTGV---------------PSLLSEALETTKVGKGKVIVIGVGVD-T----------  178 (254)
Q Consensus       125 ~~~~~~~~i~~~~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~~-~----------  178 (254)
                        +++.+.+.+++++.++|++||++|.               +..++.++++++++ |+++.+|.+.+ .          
T Consensus        80 --~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~  156 (195)
T d1kola2          80 --TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKI  156 (195)
T ss_dssp             --SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHT
T ss_pred             --cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhc
Confidence              9999999999999899999999984               35799999999999 99999997654 1          


Q ss_pred             -eeeccHHHHHhCCCEEEeeecCCCCCCCCHHHHHHHHhCCC
Q 025336          179 -MVPLNVIALACGGRTLKGTTFGGIKTKSDLPILLDKCKNKE  219 (254)
Q Consensus       179 -~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  219 (254)
                       ..++++..++.|++++.+..   ..-...++++++++.+++
T Consensus       157 ~~~~~~~~~~~~k~~~i~~g~---~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         157 GSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             TCCCCCHHHHHHTTCEEEESS---CCHHHHHHHHHHHHHTTS
T ss_pred             CceeeeHHHHHhhcceeccCC---CchHHHHHHHHHHHHcCC
Confidence             22345555666888876422   222344778888887764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.2e-27  Score=174.48  Aligned_cols=171  Identities=16%  Similarity=0.161  Sum_probs=132.2

Q ss_pred             CCccccccccchhhhhhHHHHHhcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHH-HHHhcCCce
Q 025336           42 IDLSHASFLSCGFTTGFGAAWKEAEVEKG--SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKE-KGEAFGMTD  117 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~-~~~~~g~~~  117 (254)
                      +|+.+.+ ++++++|||++|.+..++++|  ++|||+|+ |++|++++|+||.+|+.+|++++.++++.. .++++|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            5677765 678899999999999999987  88999985 999999999999999966776666665555 456799999


Q ss_pred             EeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC--cee----e---ccHHHHH
Q 025336          118 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--TMV----P---LNVIALA  188 (254)
Q Consensus       118 v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~--~~~----~---~~~~~~~  188 (254)
                      ++|+++   +++.+.+++.++ .++|++||++|++ .++..+++++++ |+++.+|...+  ...    +   .....+.
T Consensus        81 vi~~~~---~~~~~~~~~~~~-~GvDvv~D~vGg~-~~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~  154 (187)
T d1vj1a2          81 AVNYKT---GNVAEQLREACP-GGVDVYFDNVGGD-ISNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRK  154 (187)
T ss_dssp             EEETTS---SCHHHHHHHHCT-TCEEEEEESSCHH-HHHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHH
T ss_pred             Eeeccc---hhHHHHHHHHhc-cCceEEEecCCch-hHHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHH
Confidence            999998   999999999986 5999999999986 789999999999 99999997443  111    1   1122355


Q ss_pred             hCCCEEEeeecCCCCC--CCCHHHHHHHHhCCC
Q 025336          189 CGGRTLKGTTFGGIKT--KSDLPILLDKCKNKE  219 (254)
Q Consensus       189 ~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~  219 (254)
                      .+++++.|+.+..+..  .+.++++.+++++||
T Consensus       155 ~k~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         155 ERNITRERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             HTTCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             hcceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            6999999987654432  344677777887765

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4.9e-26  Score=167.16  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=124.9

Q ss_pred             CCccccccccchhhhhhHHHH---HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce
Q 025336           42 IDLSHASFLSCGFTTGFGAAW---KEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD  117 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~  117 (254)
                      +|+.+|+.++++.+|||+++.   +....+++++|||+|+ |++|++++|+||.+|+ +|+++++++++.+.++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578999999999999997753   3444556679999976 9999999999999999 8999999999999999999999


Q ss_pred             EeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEee
Q 025336          118 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT  197 (254)
Q Consensus       118 v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~  197 (254)
                      ++++++   .+..+.   + ....+|.++|++|++ .+...+++++++ |+++.+|...+...+++...++.|++++.|+
T Consensus        80 vi~~~~---~~~~~~---l-~~~~~~~vvD~Vgg~-~~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~  150 (177)
T d1o89a2          80 VLPRDE---FAESRP---L-EKQVWAGAIDTVGDK-VLAKVLAQMNYG-GCVAACGLAGGFTLPTTVMPFILRNVRLQGV  150 (177)
T ss_dssp             EEEGGG---SSSCCS---S-CCCCEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTTCSCCCCCSHHHHHHCCEEEEC
T ss_pred             cccccc---HHHHHH---H-HhhcCCeeEEEcchH-HHHHHHHHhccc-cceEeecccCCccccccHHHHHHCCCeEEEE
Confidence            999876   443322   2 223689999999987 789999999999 9999999887755667777778899999998


Q ss_pred             ecC
Q 025336          198 TFG  200 (254)
Q Consensus       198 ~~~  200 (254)
                      ...
T Consensus       151 ~~~  153 (177)
T d1o89a2         151 DSV  153 (177)
T ss_dssp             CSS
T ss_pred             ecc
Confidence            644

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=8.2e-25  Score=159.03  Aligned_cols=140  Identities=21%  Similarity=0.159  Sum_probs=116.8

Q ss_pred             chhhhhhH---HHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCc
Q 025336           52 CGFTTGFG---AAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNK  127 (254)
Q Consensus        52 ~~~~ta~~---~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~  127 (254)
                      ++++|||.   +|.+....+++++|||+|+ |++|++++|+||.+|+ +|+++++++++.++++++|+++++++++    
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~----   77 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED----   77 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH----
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc----
Confidence            45567764   4555666778889999986 9999999999999999 9999999999999999999999987653    


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeec
Q 025336          128 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTF  199 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~  199 (254)
                       ......+.+.++++|+++|++|++ .++.++++++++ |+++.+|...+...+++...++.+++++.|...
T Consensus        78 -~~~~~~~~~~~~gvd~vid~vgg~-~~~~~~~~l~~~-G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~  146 (167)
T d1tt7a2          78 -VYDGTLKALSKQQWQGAVDPVGGK-QLASLLSKIQYG-GSVAVSGLTGGGEVPATVYPFILRGVSLLGIDS  146 (167)
T ss_dssp             -HCSSCCCSSCCCCEEEEEESCCTH-HHHHHHTTEEEE-EEEEECCCSSCSCEEECSHHHHTSCCEEEECCS
T ss_pred             -hhchhhhcccCCCceEEEecCcHH-HHHHHHHHhccC-ceEEEeeccCCCcccCCHHHHHHCCcEEEEEec
Confidence             212222334556999999999997 889999999999 999999998876778888888889999999753

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=6.8e-17  Score=100.06  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=66.0

Q ss_pred             CCccccccccchhhhhhHHHH---HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC
Q 025336           42 IDLSHASFLSCGFTTGFGAAW---KEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM  115 (254)
Q Consensus        42 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~  115 (254)
                      +|++||+.+++++.|||++++   +....+++++|||+|+ |++|.+++|++|.+|+ +|+++.+++++.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578999999999999998764   4456789999999976 9999999999999999 99999999999999999885

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=98.12  Aligned_cols=75  Identities=12%  Similarity=0.140  Sum_probs=68.3

Q ss_pred             CCCCCcccccCCceeeeee-ccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            1 MLDGTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +|+++++|++ ||+|++.. ..|+|+||+++|++.++++|+++++++|++++++++|+++.+...+....|+++||+
T Consensus        75 vG~~v~~~~v-GdrV~~~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          75 VGDNASAFKK-GDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             ECTTCTTCCT-TCEEEESCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             ecceeecccc-CccccccccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            3788999999 99998654 458999999999999999999999999999999999999998888999999999974

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.39  E-value=8.9e-14  Score=101.65  Aligned_cols=76  Identities=11%  Similarity=0.124  Sum_probs=67.3

Q ss_pred             CCCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++.+|++ ||+|...                            ..+|+|+||+++|++.++++|+++++++++++++
T Consensus        72 vG~~v~~~~~-GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~  150 (178)
T d1e3ja1          72 VGKNVKHLKK-GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSF  150 (178)
T ss_dssp             ECTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEE
T ss_pred             cCcccCCCCC-CCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHh
Confidence            3788889999 9999531                            1238999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcC
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGL   78 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~   78 (254)
                      ++.|||+++ +++++++|++|+|+|+
T Consensus       151 ~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         151 KLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             EGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             HHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            999999997 6889999999999974

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=6.4e-13  Score=91.62  Aligned_cols=71  Identities=11%  Similarity=0.116  Sum_probs=61.5

Q ss_pred             CCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            3 DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         3 ~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      ...+..-+ ||+|+++...|+|+||+++|++.++++|+++++++|+++++++.|||++|.+++.  .|++||++
T Consensus        61 ~E~~G~Vv-Gd~V~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g~--~g~tvl~l  131 (131)
T d1iz0a1          61 MEVVGVVE-GRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRGH--TGKVVVRL  131 (131)
T ss_dssp             CEEEEEET-TEEEEEECSSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTTC--CBEEEEEC
T ss_pred             eeeEEeec-cceEEEEeccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhccc--CCCEEEEC
Confidence            33344446 9999999888999999999999999999999999999999999999999977664  48888863

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.25  E-value=3.7e-12  Score=92.13  Aligned_cols=72  Identities=13%  Similarity=0.184  Sum_probs=62.6

Q ss_pred             CCCCCcccccCCceeeee---------------------------eccCcceeeEEecCCceEEcCCCCCccccccccch
Q 025336            1 MLDGTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~   53 (254)
                      +|+++.++++ ||+|...                           ..+|+|+||+++|+..++++|++++++.+++++++
T Consensus        72 vG~~v~~~~~-GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~  150 (171)
T d1h2ba1          72 VAEGVEGLEK-GDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDE  150 (171)
T ss_dssp             ECTTCCSCCT-TCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGG
T ss_pred             ccCCCCcCCC-CCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhH
Confidence            3778889999 9999632                           22389999999999999999999999989888899


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEE
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAV   75 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI   75 (254)
                      +.|||+++ ++..+ .|++|||
T Consensus       151 ~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         151 INDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             HHHHHHHH-HTTCC-SSEEEEE
T ss_pred             HHHHHHHH-HhcCC-CCCEEEe
Confidence            99999998 56777 8999997

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.22  E-value=3.6e-12  Score=90.41  Aligned_cols=72  Identities=17%  Similarity=0.205  Sum_probs=61.3

Q ss_pred             CCCcccccCCceeeee------eccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            3 DGTSRMSVRGQKLYHI------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         3 ~~~~~~~~~Gd~v~~~------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +++..|++ ||+|++.      ..+|+|+||+++|++.++++|+++++ +|++++++.+||+.++..+.+++ |++|||+
T Consensus        75 ~~~~~~~~-g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l  151 (152)
T d1xa0a1          75 SQHPRFRE-GDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQALKRILRGELR-GRTVVRL  151 (152)
T ss_dssp             CCSSSCCT-TCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEEC
T ss_pred             cCCCcccc-CCEEEEecCccccccCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEc
Confidence            45678899 9999754      23489999999999999999999985 67888899999999888888886 9999997


Q ss_pred             c
Q 025336           77 G   77 (254)
Q Consensus        77 G   77 (254)
                      |
T Consensus       152 ~  152 (152)
T d1xa0a1         152 A  152 (152)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.3e-11  Score=86.96  Aligned_cols=73  Identities=15%  Similarity=0.147  Sum_probs=60.1

Q ss_pred             CCCCCcccccCCceee-eeeccCcceeeEEecCCceEEcCCCCCccccc--cccchhhhhhHHHHHhcCCCCCCEEEE
Q 025336            1 MLDGTSRMSVRGQKLY-HIFSCSTWSEYMVIDANYVVRVDPSIDLSHAS--FLSCGFTTGFGAAWKEAEVEKGSSVAV   75 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~-~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa--~~~~~~~ta~~~l~~~~~~~~~~~vlI   75 (254)
                      +|+++.+|++ ||+|+ .....|+|+||++++++.++++|+++++++++  +++....++++++. ..++++|++|||
T Consensus        71 vG~~v~~~~v-GdrV~~~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~-~~~~~~G~~VLI  146 (147)
T d1qora1          71 VGSGVKHIKA-GDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEIL-ESRATQGSSLLI  146 (147)
T ss_dssp             ECTTCCSCCT-TCEEEESCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHH-HTTCCCBCCEEE
T ss_pred             eeeecccccc-cceeeeeccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEe
Confidence            3788999999 99996 44456999999999999999999999887554  45666677777774 468999999997

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.18  E-value=1.1e-11  Score=91.74  Aligned_cols=56  Identities=23%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +|+|+||+++|+..++++|+++++++++++.+++.|++.++....+.+.|++|||+
T Consensus       144 ~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         144 TSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             cCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            48999999999999999999999999999999999999999878888999999984

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.2e-10  Score=85.19  Aligned_cols=75  Identities=5%  Similarity=0.068  Sum_probs=59.7

Q ss_pred             CCCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++.+|++ ||+|...                            ..+|+|+||+++|+.+++++|++++++++++++ 
T Consensus        78 vG~~v~~~~~-GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~p-  155 (185)
T d1pl8a1          78 VGSSVKHLKP-GDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFP-  155 (185)
T ss_dssp             ECTTCCSCCT-TCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEE-
T ss_pred             eccceeeecc-cccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHH-
Confidence            3778889999 9999632                            123789999999999999999999999987654 


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcCCH
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGLGT   80 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~   80 (254)
                       +.+|+.++ +..++++|++||| |+|+
T Consensus       156 -l~~a~~a~-~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         156 -LEKALEAF-ETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             -GGGHHHHH-HHHHTTCCSEEEE-ECCT
T ss_pred             -HHHHHHHH-HHhCCCCCCEEEE-EeCC
Confidence             45677775 6778899999998 5554

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=8e-11  Score=86.37  Aligned_cols=55  Identities=13%  Similarity=0.246  Sum_probs=48.5

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +|+|+||+++|+..++++|+++++++|+.+...+.|||+++ .+++++++++|||.
T Consensus       132 ~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         132 QGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             CCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             ccceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            48999999999999999999999988876655577999998 68999999999875

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.03  E-value=1e-12  Score=94.31  Aligned_cols=74  Identities=12%  Similarity=0.109  Sum_probs=60.7

Q ss_pred             CCCcccccCCceeeee------eccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336            3 DGTSRMSVRGQKLYHI------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus         3 ~~~~~~~~~Gd~v~~~------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +++.++++ |++|+..      ..+|+|+||+++|++.++++|+++|+++|++++..++|||.++. ..+...+++|||.
T Consensus        75 ~~~~~~~~-g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~  152 (162)
T d1tt7a1          75 SNDPRFAE-GDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQN  152 (162)
T ss_dssp             CSSTTCCT-TCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTT
T ss_pred             cccccccc-ceeeEeeeccceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEE
Confidence            35567888 9998743      23589999999999999999999999999999999999998863 3455556778887


Q ss_pred             cC
Q 025336           77 GL   78 (254)
Q Consensus        77 G~   78 (254)
                      |+
T Consensus       153 ga  154 (162)
T d1tt7a1         153 RI  154 (162)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.02  E-value=1.6e-10  Score=83.77  Aligned_cols=73  Identities=15%  Similarity=0.171  Sum_probs=60.0

Q ss_pred             CCCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|++++.+++ ||+|+..                            ..+|+|+||+++|+.+++++|++++++.++++.+
T Consensus        75 ~G~~v~~~~~-GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~  153 (175)
T d1llua1          75 VGSGVTRVKE-GDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLD  153 (175)
T ss_dssp             ECTTCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGG
T ss_pred             eCCCcccccc-CCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHh
Confidence            3788889999 9998631                            1237899999999999999999999998888888


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEE
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      ++.|+++.+ +.. ..+|++|||+
T Consensus       154 ~~~t~~~~~-~~g-~~~G~~VLVl  175 (175)
T d1llua1         154 DINQILDQM-RAG-QIEGRIVLEM  175 (175)
T ss_dssp             GHHHHHHHH-HTT-CCSSEEEEEC
T ss_pred             HHHHHHHHH-HhC-CCCCCEEEeC
Confidence            999998876 444 4479999984

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.94  E-value=7.3e-13  Score=96.48  Aligned_cols=84  Identities=8%  Similarity=-0.026  Sum_probs=66.5

Q ss_pred             CCCCcccccCCceeeee-eccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHH-hcCCCCCCEEEEEc-C
Q 025336            2 LDGTSRMSVRGQKLYHI-FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWK-EAEVEKGSSVAVLG-L   78 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~-~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlI~G-~   78 (254)
                      |.+++.++. ||+|+.. ...|+|+||+++|+..++++|+.++.+.+  +++..+|||+++.. ..++++|++|||+| +
T Consensus        88 ~~~~~~~~~-g~~v~~~~~~~g~~aey~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa  164 (175)
T d1gu7a1          88 GSNVSSLEA-GDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVA  164 (175)
T ss_dssp             CTTCCSCCT-TCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHH
T ss_pred             ccccccccc-ccceeccccccccccceeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECcc
Confidence            566788888 9999754 34589999999999999999997754444  34677899988754 46899999999997 4


Q ss_pred             -CHHHHHHHHH
Q 025336           79 -GTVGLGAVDG   88 (254)
Q Consensus        79 -g~~G~~~~~~   88 (254)
                       |++|++++|+
T Consensus       165 ~~gvG~~~iQ~  175 (175)
T d1gu7a1         165 NSKDGKQLITY  175 (175)
T ss_dssp             TGGGSCEEEEC
T ss_pred             chhhhheEEeC
Confidence             6799887763

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.93  E-value=3.9e-10  Score=83.08  Aligned_cols=56  Identities=23%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             cCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336           21 CSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus        21 ~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      .|+|+||+++|+..++++|+++++++++++++++.|++.++.....-+.+++|||+
T Consensus       142 ~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         142 TSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             cccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            48999999999999999999999999999999999999998554455678888874

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.93  E-value=4.5e-10  Score=81.01  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=55.9

Q ss_pred             CCCCCcccccCCceeeee----------------------------eccCcceeeEEecCCceEEcCCCCCccccccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSC   52 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~   52 (254)
                      +|+++..+++ ||+|...                            ..+|+|+||+++|+++++++|++++++.|++  .
T Consensus        70 vG~~v~~~~v-GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~l--~  146 (171)
T d1rjwa1          70 VGPGVTHLKV-GDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPL--E  146 (171)
T ss_dssp             ECTTCCSCCT-TCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEEG--G
T ss_pred             ecccccCcee-eeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHHH--H
Confidence            3778889999 9998521                            1238999999999999999999999876654  3


Q ss_pred             hhhhhhHHHHHhcCCCCCCEEEEEcC
Q 025336           53 GFTTGFGAAWKEAEVEKGSSVAVLGL   78 (254)
Q Consensus        53 ~~~ta~~~l~~~~~~~~~~~vlI~G~   78 (254)
                      +..++++.+ .++.+ +|++|||+|.
T Consensus       147 ~~~~~~~~~-~~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         147 KINEVFDRM-LKGQI-NGRVVLTLED  170 (171)
T ss_dssp             GHHHHHHHH-HTTCC-SSEEEEECCC
T ss_pred             HHHHHHHHH-HhcCC-CCCEEEEeCC
Confidence            455677665 34555 4999999874

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.82  E-value=3e-09  Score=77.99  Aligned_cols=54  Identities=20%  Similarity=0.326  Sum_probs=45.2

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      |+|+||+++++..++++|++++++++                         +++.|+|++|++++|+++.+|+++|++|
T Consensus       140 g~fae~~~v~~~~~~~ip~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         140 SSFATYALSRENNTVKVTKDFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CCSBSEEEEEGGGEEEECTTCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             cccceeEEEehHHEEECCCCCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            68899999999999999998876543                         4456789999999999999999666665

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.74  E-value=4.9e-12  Score=93.67  Aligned_cols=68  Identities=10%  Similarity=0.037  Sum_probs=53.8

Q ss_pred             CcceeeEEecC--CceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 025336           22 STWSEYMVIDA--NYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA   94 (254)
Q Consensus        22 g~~a~~~~v~~--~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~   94 (254)
                      |+|+||+++|.  ..++++|+..++.+++++..++.++++++ ...+.+.++    +|+|++|++++|+||.+|+
T Consensus       132 Gg~aeyv~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         132 GGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             CCSBSEEEESSHHHHCEECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred             cccccEEEeehHHCeEEECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence            79999999985  36999999877777777777888888876 444444443    5889999999999998875

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3.8e-09  Score=73.73  Aligned_cols=56  Identities=11%  Similarity=0.069  Sum_probs=47.0

Q ss_pred             CcccccCCceeeee------eccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHH
Q 025336            5 TSRMSVRGQKLYHI------FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAA   61 (254)
Q Consensus         5 ~~~~~~~Gd~v~~~------~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l   61 (254)
                      ...+++ ||+++..      ..+|+|+||+++|++.++++|+++|+++||++++++.||+.++
T Consensus        74 ~~~~~~-g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          74 DPRFHA-GQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             STTCCT-TCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             cCCccc-eeeEEeecccceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456788 9998743      2359999999999999999999999999999998888886543

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.73  E-value=4.7e-09  Score=77.60  Aligned_cols=52  Identities=25%  Similarity=0.326  Sum_probs=45.4

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      |+|+||+++|+..++++|++++++.+++..+++.+++.++. .  +++|++|.|+
T Consensus       148 G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~-~--~k~G~~V~vi  199 (202)
T d1e3ia1         148 SSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAID-L--MKEGKSIRTI  199 (202)
T ss_dssp             CCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHH-H--HHTTCCSEEE
T ss_pred             CCceEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHH-h--CCCCCEEEEE
Confidence            89999999999999999999999998888888888888763 2  4689988876

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=4e-08  Score=71.10  Aligned_cols=49  Identities=18%  Similarity=0.187  Sum_probs=41.2

Q ss_pred             cCcceeeEEec-CCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336           21 CSTWSEYMVID-ANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus        21 ~g~~a~~~~v~-~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +|+|+||++++ +..++++|+++++++      ++.+|+.++ +++++++|++|||+
T Consensus       133 ~Gg~ae~~~v~~~~~v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         133 RGCYSSHIVLDPETDVLKVSEKITHRL------PLKEANKAL-ELMESREALKVILY  182 (184)
T ss_dssp             CSSSBSEEEECTTCCEEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred             ceeCcCcEEechhHcEEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence            48999999995 578999999998753      355778777 78899999999997

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.48  E-value=1.1e-07  Score=68.46  Aligned_cols=71  Identities=10%  Similarity=0.067  Sum_probs=50.9

Q ss_pred             CCCCcccccCCceeeee---------------------------eccCcceeeEEecCCc-eEEcCCCCCccccccccch
Q 025336            2 LDGTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANY-VVRVDPSIDLSHASFLSCG   53 (254)
Q Consensus         2 g~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~-v~~~p~~~~~~~aa~~~~~   53 (254)
                      |.++.+|++ ||+|...                           ..+|+|+||+++|+.. ++++|+..+.+.++....+
T Consensus        78 g~~v~~~~~-GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~  156 (177)
T d1jvba1          78 GDEVVGYSK-GDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEE  156 (177)
T ss_dssp             CTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGG
T ss_pred             ccCcccccc-CceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCChHHHHHHHHHH
Confidence            677888999 9998532                           1238999999998755 5666665444444444568


Q ss_pred             hhhhhHHHHHhcCCCCCCEEEE
Q 025336           54 FTTGFGAAWKEAEVEKGSSVAV   75 (254)
Q Consensus        54 ~~ta~~~l~~~~~~~~~~~vlI   75 (254)
                      +.++++++ ...++ .|++|||
T Consensus       157 ~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         157 ANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             HHHHHHHH-HTTCC-CSEEEEE
T ss_pred             HHHHHHHH-Hhhcc-cCCceEC
Confidence            88999887 56665 5889987

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.36  E-value=1.2e-06  Score=61.31  Aligned_cols=98  Identities=22%  Similarity=0.248  Sum_probs=74.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--eEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--DFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +..+|+|+|+|..|+.+++.|+.+|+ +|.+.|.+.++++.++.....  .....++   +.+.+.+.      ..|+||
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~---~~l~~~~~------~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA------EADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH------TCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhh---hhHHHhhc------cCcEEE
Confidence            34689999999999999999999999 999999999999988875322  2222222   34444442      789999


Q ss_pred             EcCCChh------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          147 ECTGVPS------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       147 d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .++--+.      .-+..++.++++ ..+|++....+
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~G-SVIVDvaidqG  136 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQG  136 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred             EeeecCCcccCeeecHHHHhhcCCC-cEEEEeecCCC
Confidence            9874221      246888999999 99999987655

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.34  E-value=3.6e-09  Score=76.33  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             CCCCCcccccCCceeeee------------------------------eccCcceeeEEecC--CceEEcCCCCCccccc
Q 025336            1 MLDGTSRMSVRGQKLYHI------------------------------FSCSTWSEYMVIDA--NYVVRVDPSIDLSHAS   48 (254)
Q Consensus         1 ~g~~~~~~~~~Gd~v~~~------------------------------~~~g~~a~~~~v~~--~~v~~~p~~~~~~~aa   48 (254)
                      +|+++++|++ ||+|...                              ..+|+|+||+++|.  .+++++|+++++++++
T Consensus        68 vG~~v~~~~v-GdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~  146 (177)
T d1jqba1          68 VGSEVKDFKP-GDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLV  146 (177)
T ss_dssp             ECTTCCSCCT-TCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGE
T ss_pred             cccccceecC-CCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHH
Confidence            4788899999 9998511                              12389999999996  4689999999988776


Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHH
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGA   85 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~   85 (254)
                      ...   .+++..+        ++.+|++|+|++|+++
T Consensus       147 ~~~---~~~~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         147 THV---YHGFDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             EEE---EESGGGH--------HHHHHHHHHCCTTCSE
T ss_pred             HHH---HHHHHHh--------cCceEEECCCHHHhhe
Confidence            432   2333332        2347777877777543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.30  E-value=4.1e-06  Score=59.37  Aligned_cols=104  Identities=24%  Similarity=0.308  Sum_probs=74.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeC-CCCC-C---------------CchHHHH
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN-PDDE-P---------------NKSISEL  132 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~-~~~~-~---------------~~~~~~~  132 (254)
                      ..+|+|+|+|..|+.+++.|+.+|+ +|.+.|.+.++++.+++++...+-. .... +               .....+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            4589999999999999999999999 9999999999999999988654311 0000 0               0011122


Q ss_pred             HHHhhCCCCccEEEEcCCChh------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          133 VKGITHGMGVDYCFECTGVPS------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +.+..  ...|+||-++--+.      .-+..++.++++ ..+|++....+
T Consensus       108 l~~~l--~~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidqG  155 (183)
T d1l7da1         108 VLKEL--VKTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAG  155 (183)
T ss_dssp             HHHHH--TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGT
T ss_pred             HHHHH--HhhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecCC
Confidence            22222  27899998773211      246888999999 99999987654

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.21  E-value=1.2e-06  Score=60.55  Aligned_cols=67  Identities=12%  Similarity=0.107  Sum_probs=49.4

Q ss_pred             CCCcccccCCceeeeeeccCcceeeEEecCCceEEcCCCCCc-----cccccccchhhhh-hHHHHHhcCCCCCCEEEE
Q 025336            3 DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDL-----SHASFLSCGFTTG-FGAAWKEAEVEKGSSVAV   75 (254)
Q Consensus         3 ~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~-----~~aa~~~~~~~ta-~~~l~~~~~~~~~~~vlI   75 (254)
                      +++.+|++ ||+|++.   ++|+||.++++..+.++|+..+.     ...+++....+|| |..|.  ...+.|++||+
T Consensus        74 S~~~~f~~-GD~V~g~---~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~  146 (147)
T d1v3va1          74 SKNSAFPA-GSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT  146 (147)
T ss_dssp             ESCTTSCT-TCEEEEC---CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred             eCCCcccC-CCEEEEc---cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence            45678999 9999865   56999999999999999876432     2345566677774 54664  33467999886

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.09  E-value=1.2e-06  Score=64.66  Aligned_cols=112  Identities=20%  Similarity=0.252  Sum_probs=76.5

Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCceEeCCCCC
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTDFINPDDE  124 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~v~~~~~~  124 (254)
                      +++.+...|.  +.+...++++++||.+|+|+ |..++-+++..|. +|++++.+++-.+.++    ++|.+++....  
T Consensus        60 ~is~P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~--  133 (215)
T d1jg1a_          60 TVSAPHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVIL--  133 (215)
T ss_dssp             EECCHHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEE--
T ss_pred             hhhhhhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEE--
Confidence            4444554443  33678899999999999875 8888888888886 8999999987666654    46655433222  


Q ss_pred             CCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          125 PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       125 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                        .+...   .+.....||.++-+.+.+..-..+++.|+++ |+++..
T Consensus       134 --gd~~~---g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p  175 (215)
T d1jg1a_         134 --GDGSK---GFPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP  175 (215)
T ss_dssp             --SCGGG---CCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             --Ccccc---CCcccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence              11111   1122348999997766554557888999999 999864

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.06  E-value=1.2e-05  Score=56.85  Aligned_cols=72  Identities=21%  Similarity=0.217  Sum_probs=55.7

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ....+.++.+|||+|+|+.+.+++..++..|++++.++.|+.++.+.+.+ ++... ++...               ...
T Consensus        10 ~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~~---------------~~~   73 (167)
T d1npya1          10 EKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY-INSLE---------------NQQ   73 (167)
T ss_dssp             HHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE-ESCCT---------------TCC
T ss_pred             HHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh-hhccc---------------ccc
Confidence            56666678899999999999999999999998889999999988777654 44332 33221               127


Q ss_pred             ccEEEEcCC
Q 025336          142 VDYCFECTG  150 (254)
Q Consensus       142 ~d~v~d~~g  150 (254)
                      +|++++|+.
T Consensus        74 ~DliINaTp   82 (167)
T d1npya1          74 ADILVNVTS   82 (167)
T ss_dssp             CSEEEECSS
T ss_pred             hhhheeccc
Confidence            899999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.01  E-value=6.7e-05  Score=52.33  Aligned_cols=97  Identities=15%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHH-HHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKE-KGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      --.+.+|||+|+|.+|.++++.+...|+++++++.++.++.+ +++++|.. ++++     .++.+.+.      .+|++
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~-----~~~~~~l~------~~Div   88 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF-----DELVDHLA------RSDVV   88 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG-----GGHHHHHH------TCSEE
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccc-----hhHHHHhc------cCCEE
Confidence            346889999999999999999999999978999989877765 45667743 4443     33444432      89999


Q ss_pred             EEcCCChh------HHHHHHHHcccCCc--EEEEEccCC
Q 025336          146 FECTGVPS------LLSEALETTKVGKG--KVIVIGVGV  176 (254)
Q Consensus       146 ~d~~g~~~------~~~~~~~~l~~~~G--~~v~~g~~~  176 (254)
                      |.|++.+.      .++..++.-..+ .  .+++++.+.
T Consensus        89 i~atss~~~ii~~~~i~~~~~~r~~~-~~~~iiDlavPr  126 (159)
T d1gpja2          89 VSATAAPHPVIHVDDVREALRKRDRR-SPILIIDIANPR  126 (159)
T ss_dssp             EECCSSSSCCBCHHHHHHHHHHCSSC-CCEEEEECCSSC
T ss_pred             EEecCCCCccccHhhhHHHHHhcccC-CCeEEEeecCCC
Confidence            99998642      233333332222 2  566776653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.97  E-value=6.9e-06  Score=61.89  Aligned_cols=103  Identities=10%  Similarity=0.064  Sum_probs=70.5

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cC-CceEeCCCCCCCchHHHHHHH
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FG-MTDFINPDDEPNKSISELVKG  135 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~~~i~~  135 (254)
                      ....+++||++||=.|+|+ |.++..+|+..|. .+|++++.+++..+.+++    ++ ...+- ...   .++.    +
T Consensus        78 i~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~-~~~---~Di~----~  148 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR-TSR---SDIA----D  148 (250)
T ss_dssp             ---CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEE-EEC---SCTT----T
T ss_pred             HHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceE-EEE---eeee----c
Confidence            3678899999999999875 7788888887764 389999999998888865    22 22221 111   1221    1


Q ss_pred             hhCCCCccEEE-EcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCF-ECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ......||.|+ |.......++.+.+.|+|+ |+++.+..
T Consensus       149 ~~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~P  187 (250)
T d1yb2a1         149 FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP  187 (250)
T ss_dssp             CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred             ccccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEeC
Confidence            12234799998 4444445789999999999 99988744

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=9.2e-07  Score=65.45  Aligned_cols=102  Identities=24%  Similarity=0.263  Sum_probs=71.0

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHh
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      .+...+++|++||-+|+|. |..++.+++..|. .+|++++.+++..+.+++    .+...+....    .+..+   ..
T Consensus        68 l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~----~d~~~---~~  139 (213)
T d1dl5a1          68 MEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC----GDGYY---GV  139 (213)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE----SCGGG---CC
T ss_pred             HHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccccccccc----CchHH---cc
Confidence            4778899999999999876 8888889998763 389999999988888765    3433222111    11110   01


Q ss_pred             hCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          137 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      .....||.|+.+.+-+...+.+++.|+++ |+++..
T Consensus       140 ~~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~p  174 (213)
T d1dl5a1         140 PEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  174 (213)
T ss_dssp             GGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEE
T ss_pred             ccccchhhhhhhccHHHhHHHHHHhcCCC-cEEEEE
Confidence            12237999998766554456788999999 999773

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.92  E-value=0.0001  Score=55.46  Aligned_cols=107  Identities=21%  Similarity=0.227  Sum_probs=72.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhC-CCCccE
Q 025336           68 EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITH-GMGVDY  144 (254)
Q Consensus        68 ~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~-~~~~d~  144 (254)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+..+++++..+.+++.+...+ .|-.+  .++..+.+.+... ..++|+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G~iDi   79 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED--ERERVRFVEEAAYALGRVDV   79 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC--HHHHHHHHHHHHHhcCCCCe
Confidence            36899999986 8999999999999999 99999999988888887775432 34433  2333333333221 127999


Q ss_pred             EEEcCCChh-------------------------HHHHHHHHccc-CCcEEEEEccCCC
Q 025336          145 CFECTGVPS-------------------------LLSEALETTKV-GKGKVIVIGVGVD  177 (254)
Q Consensus       145 v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~~  177 (254)
                      ++++.|...                         ..+.+++.+.+ ++|+++.+++...
T Consensus        80 LVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~  138 (248)
T d2d1ya1          80 LVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQG  138 (248)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             EEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccc
Confidence            999987511                         23345555543 2289998876543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.85  E-value=8.3e-05  Score=53.58  Aligned_cols=75  Identities=17%  Similarity=0.227  Sum_probs=54.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c----C-CceEeCCCCCCCchHHHHHHHhhCCC
Q 025336           68 EKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F----G-MTDFINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        68 ~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~----g-~~~v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      -+|+++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+.+ +    . .....|..+   .   +.+.+..+  
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~---~~~~~~~~--   91 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---D---ASRAEAVK--   91 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---H---HHHHHHTT--
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc---H---HHHHHHhc--
Confidence            37899999986 9999999999999999 99999999988776543 1    2 122344433   2   23333332  


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|++|++.|.
T Consensus        92 ~iDilin~Ag~  102 (191)
T d1luaa1          92 GAHFVFTAGAI  102 (191)
T ss_dssp             TCSEEEECCCT
T ss_pred             CcCeeeecCcc
Confidence            79999999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=6.2e-05  Score=57.17  Aligned_cols=103  Identities=21%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCC-ceE-eCCCCCCCchHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGM-TDF-INPDDEPNKSISELV  133 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~-~~v-~~~~~~~~~~~~~~i  133 (254)
                      +....++++|++||=.|+|+ |.++..+|+..|. .+|++++.+++..+.+++    +|. +.+ +...+     .    
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d-----~----  164 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD-----I----  164 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC-----G----
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc-----c----
Confidence            44788999999999999876 7888899998763 389999999998888765    453 222 22221     1    


Q ss_pred             HHhhCCCCccEEEEcCCC-hhHHHHHHHHcccCCcEEEEEcc
Q 025336          134 KGITHGMGVDYCFECTGV-PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ........+|.|+--... ...++.+.+.|+|+ |+++.+..
T Consensus       165 ~~~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~P  205 (266)
T d1o54a_         165 SEGFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP  205 (266)
T ss_dssp             GGCCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred             cccccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEeC
Confidence            111233478888754444 45789999999999 99988753

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.81  E-value=0.00015  Score=54.70  Aligned_cols=106  Identities=16%  Similarity=0.147  Sum_probs=70.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCceEe---CCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDFI---NPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~v~---~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+ ++++....+   |..+  ..+....+.+... ..++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i   81 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS--EADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTC--HHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCC--HHHHHHHHHHHHHHhCCC
Confidence            5788999986 8999999999999999 999999998887765 446643322   3222  2333333333221 1279


Q ss_pred             cEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          143 DYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       143 d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      |+++++.|...                         ..+.++..+...+|+++.+++..+
T Consensus        82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~  141 (253)
T d1hxha_          82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS  141 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhh
Confidence            99999998511                         234555566543399998887543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.81  E-value=2.4e-05  Score=57.91  Aligned_cols=109  Identities=21%  Similarity=0.195  Sum_probs=71.9

Q ss_pred             cccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC--c--eEeCCCCC
Q 025336           49 FLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM--T--DFINPDDE  124 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~--~--~v~~~~~~  124 (254)
                      .++.+...|.  +.....+++|++||-+|+|. |..++.+++. +. +|++++.+++-.+.+++.-.  .  .++..+  
T Consensus        52 ~~~~p~~~a~--ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d--  124 (224)
T d1vbfa_          52 NTTALNLGIF--MLDELDLHKGQKVLEIGTGI-GYYTALIAEI-VD-KVVSVEINEKMYNYASKLLSYYNNIKLILGD--  124 (224)
T ss_dssp             EECCHHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESC--
T ss_pred             ceehhhhHHH--HHHHhhhcccceEEEecCCC-CHHHHHHHHH-hc-ccccccccHHHHHHHHHHHhcccccccccCc--
Confidence            3334444443  33678899999999999874 7777777775 45 79999999988888866321  1  122111  


Q ss_pred             CCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          125 PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       125 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                          ...   .+.....||.|+-+.+.+.....+++.|+++ |++|..
T Consensus       125 ----~~~---g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p  164 (224)
T d1vbfa_         125 ----GTL---GYEEEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP  164 (224)
T ss_dssp             ----GGG---CCGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             ----hhh---cchhhhhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence                100   0112237999987666554556788999999 999875

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=9.6e-05  Score=55.62  Aligned_cols=105  Identities=24%  Similarity=0.229  Sum_probs=69.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceE--eCCCCCCCchHHHHHHHhhC-CCCcc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDF--INPDDEPNKSISELVKGITH-GMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v--~~~~~~~~~~~~~~i~~~~~-~~~~d  143 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+.+ ++....  .|-.+  .++..+.+.+... -.++|
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~~~~g~iD   81 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFGRLD   81 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC--HHHHHHHHHHHHHhcCCCC
Confidence            5889999986 8999999999999999 99999999988887655 332222  24333  2333333333221 12799


Q ss_pred             EEEEcCCChh--------------------------HHHHHHHHcccCCcEEEEEccCC
Q 025336          144 YCFECTGVPS--------------------------LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       144 ~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +++++.|...                          ..+.++..++.++|+++.+++..
T Consensus        82 ilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~  140 (250)
T d1ydea1          82 CVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLV  140 (250)
T ss_dssp             EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHH
T ss_pred             EEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccccc
Confidence            9999887410                          23344555544338998887644

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.78  E-value=1.3e-05  Score=58.43  Aligned_cols=59  Identities=22%  Similarity=0.298  Sum_probs=41.7

Q ss_pred             eeeeeccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEE
Q 025336           15 LYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVL   76 (254)
Q Consensus        15 v~~~~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   76 (254)
                      +..+.+.|+|+||+++|+.+++++|+.++++.++....++.+...+   ...+++|++|+|+
T Consensus       137 ~~~~~~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi  195 (198)
T d2jhfa1         137 IHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINEG---FDLLRSGESIRTI  195 (198)
T ss_dssp             EBCSTTTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEE
T ss_pred             eccCCCCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEE
Confidence            3333345899999999999999999999887766654544433322   2235788988876

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=1.6e-05  Score=59.55  Aligned_cols=102  Identities=19%  Similarity=0.173  Sum_probs=64.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCC---CCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDE---PNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~i~~~~~~~~~d~  144 (254)
                      +|++|||+|+ +++|.+.++.+...|+ +|+.+++.+++...     ....+.....   ..+.....+.+..+..++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEAS-----ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTSS-----EEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----ccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            4789999987 8999999999999999 99998776544321     1111111110   00122333334444447999


Q ss_pred             EEEcCCCh-----------h---------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          145 CFECTGVP-----------S---------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       145 v~d~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ++++.|.-           +               ....+++.++++ |+++.+++...
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~~~  132 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAKAA  132 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccHHH
Confidence            99998740           0               233455567888 99999887654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=0.00014  Score=51.36  Aligned_cols=78  Identities=13%  Similarity=0.170  Sum_probs=54.7

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cC---CceEeCCCCCCCchHHHHHHH
Q 025336           60 AAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FG---MTDFINPDDEPNKSISELVKG  135 (254)
Q Consensus        60 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g---~~~v~~~~~~~~~~~~~~i~~  135 (254)
                      +|....-..++.+|||+|+|+.+.+++..+...|+ +++++.|+.++.+.+.+ +.   ....+...+            
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~------------   74 (170)
T d1nyta1           8 DLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDE------------   74 (170)
T ss_dssp             HHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSGG------------
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhccccccccccc------------
Confidence            34344334578999999999999999998899999 89999999888776543 32   222222211            


Q ss_pred             hhCCCCccEEEEcCCC
Q 025336          136 ITHGMGVDYCFECTGV  151 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~  151 (254)
                      . ....+|++++|+..
T Consensus        75 ~-~~~~~dliIN~Tp~   89 (170)
T d1nyta1          75 L-EGHEFDLIINATSS   89 (170)
T ss_dssp             G-TTCCCSEEEECCSC
T ss_pred             c-cccccceeeccccc
Confidence            1 12379999999864

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=1.8e-05  Score=56.61  Aligned_cols=43  Identities=14%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             CcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCC
Q 025336           22 STWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVE   68 (254)
Q Consensus        22 g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~   68 (254)
                      |+|+||+++|+.+++++|+.......+   .++.++++++ .++.++
T Consensus       125 GgfaEy~~v~~~~~~~ip~~~~~~~~a---~~l~~a~~a~-~~a~v~  167 (179)
T d1uufa1         125 GGYSQQIVVHERYVLRIRVADIEMIRA---DQINEAYERM-LRGDVK  167 (179)
T ss_dssp             CSSBSEEEEEGGGCEECCCCCEEEECG---GGHHHHHHHH-HTTCSS
T ss_pred             cccceEEEechHHEEECCCCCcChhHh---chhHHHHHHH-HHhCcc
Confidence            789999999999999999654332222   4566788776 455554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00034  Score=52.26  Aligned_cols=106  Identities=15%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      .|+++||+|+ +++|...+.-+...|+ +|+.+++++++.+.+.    +.|...   ..|..+  .++....+++.. ..
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHc
Confidence            5889999987 8999999988899999 9999999998877653    344332   234444  233333333332 12


Q ss_pred             CCccEEEEcCCChh-------------------------HHHHHHHHcccC-CcEEEEEccCCC
Q 025336          140 MGVDYCFECTGVPS-------------------------LLSEALETTKVG-KGKVIVIGVGVD  177 (254)
Q Consensus       140 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~-~G~~v~~g~~~~  177 (254)
                      ..+|+++++.|...                         ....+++.+... +|+++.+++..+
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~  146 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  146 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence            37999999998621                         233445555332 388998887665

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=9.4e-05  Score=55.48  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=56.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCc--eEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMT--DFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++..  ...|..+   .+..+.+.+..  .++|+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~--g~iDi   79 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALGSV--GPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTC--CCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHh--CCceE
Confidence            6899999986 8999999999999999 9999999988877654 44432  2345554   44444333322  37999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        80 lVnnAg~   86 (244)
T d1pr9a_          80 LVNNAAV   86 (244)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9998875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.00019  Score=53.75  Aligned_cols=168  Identities=21%  Similarity=0.187  Sum_probs=96.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCc---eEeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMT---DFINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~---~v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+. +++..   ...|..+  .++..+.+.+... ..++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD--PASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC--HHHhhhhhhhhhcccCCc
Confidence            5788999986 8999999999999999 9999999988877654 34432   2334443  2333333333321 2389


Q ss_pred             cEEEEcCCChh-------------------------HHHHHHHHc--ccCCcEEEEEccCCC-ceee-ccH---------
Q 025336          143 DYCFECTGVPS-------------------------LLSEALETT--KVGKGKVIVIGVGVD-TMVP-LNV---------  184 (254)
Q Consensus       143 d~v~d~~g~~~-------------------------~~~~~~~~l--~~~~G~~v~~g~~~~-~~~~-~~~---------  184 (254)
                      |+++++.|...                         ..+.+++.+  +.+ |+++.+++..+ ...+ ...         
T Consensus        80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~II~isS~~~~~~~~~~~~Y~asKaal~  158 (243)
T d1q7ba_          80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRH-GRIITIGSVVGTMGNGGQANYAAAKAGLI  158 (243)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCCTTCHHHHHHHHHHH
T ss_pred             ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCC-CEeeeecchhhcCCCCCCHHHHHHHHHHH
Confidence            99999887511                         234455555  345 89998886443 1111 000         


Q ss_pred             -------HHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCC
Q 025336          185 -------IALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP  245 (254)
Q Consensus       185 -------~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  245 (254)
                             ..+-.+++++-....+...+   ....++..+.+.+.. .+.    +....+|+.++..+|.+.
T Consensus       159 ~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~-pl~----R~~~pedvA~~v~fL~S~  224 (243)
T d1q7ba_         159 GFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQV-PAG----RLGGAQEIANAVAFLASD  224 (243)
T ss_dssp             HHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTC-TTS----SCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhcC-CCC----CCCCHHHHHHHHHHHhCc
Confidence                   12334567776666553322   112233333333321 122    223467888888877543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.68  E-value=0.0002  Score=50.65  Aligned_cols=97  Identities=14%  Similarity=-0.023  Sum_probs=62.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +.+|||+|+|-+|..+++.+...|. +|++++++.++.+.+.+...........   ...........  ...|.++.+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~---~~~~~~~~~~i--~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLD---VNDDAALDAEV--AKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECC---TTCHHHHHHHH--TTSSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhccccccccccc---ccchhhhHhhh--hccceeEeec
Confidence            5789999999999999999999999 9999999999888876533322222221   11111122211  1677888877


Q ss_pred             CChhHHHHHHHHcccCCcEEEEEc
Q 025336          150 GVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       150 g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ...........+...+ -.++...
T Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~   98 (182)
T d1e5qa1          76 PYTFHATVIKSAIRQK-KHVVTTS   98 (182)
T ss_dssp             CGGGHHHHHHHHHHHT-CEEECSS
T ss_pred             cchhhhHHHHHHHhhc-cceeecc
Confidence            7654444555555555 5555544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=7.1e-06  Score=61.86  Aligned_cols=105  Identities=16%  Similarity=0.174  Sum_probs=71.1

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHH
Q 025336           59 GAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        59 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      ..+....++++|++||=+|+|. |..+..+++..|+ +|++++.+++..+.+++    .|...-+....   .+.    .
T Consensus        23 ~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~---~d~----~   93 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIH---NDA----A   93 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCC----T
T ss_pred             HHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhh---hHH----h
Confidence            3455788999999999999764 6677788888898 99999999988877765    35321011111   111    1


Q ss_pred             HhhCCCCccEEEEcCC------ChhHHHHHHHHcccCCcEEEEEc
Q 025336          135 GITHGMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ++.....||+|+-.-.      -...+..+.+.|+|+ |+++...
T Consensus        94 ~~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~~  137 (245)
T d1nkva_          94 GYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  137 (245)
T ss_dssp             TCCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             hccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEEe
Confidence            1122347999984321      244678888999999 9988753

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=0.00017  Score=54.52  Aligned_cols=105  Identities=17%  Similarity=0.212  Sum_probs=73.8

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----c-C--CceE-eCCCCCCCchHH
Q 025336           60 AAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----F-G--MTDF-INPDDEPNKSIS  130 (254)
Q Consensus        60 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~-g--~~~v-~~~~~~~~~~~~  130 (254)
                      .+.....++||++||=.|+|+ |.+++.+|+..|. .+|+.++.+++..+.+++    + +  .+++ +...+     ..
T Consensus        87 ~Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d-----~~  160 (264)
T d1i9ga_          87 QIVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD-----LA  160 (264)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC-----GG
T ss_pred             HHHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc-----cc
Confidence            345788999999999999875 8889999998874 489999999999888865    1 1  2222 21111     11


Q ss_pred             HHHHHhhCCCCccEEEEcCC-ChhHHHHHHHHcccCCcEEEEEcc
Q 025336          131 ELVKGITHGMGVDYCFECTG-VPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       131 ~~i~~~~~~~~~d~v~d~~g-~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      +  ..+ ....||.||--.. ....++.+.+.|+++ |+++.+..
T Consensus       161 ~--~~~-~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~P  201 (264)
T d1i9ga_         161 D--SEL-PDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA  201 (264)
T ss_dssp             G--CCC-CTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             c--ccc-cCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEeC
Confidence            1  011 2337998874444 345788999999999 99988753

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.67  E-value=0.00022  Score=53.66  Aligned_cols=95  Identities=24%  Similarity=0.339  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      .++|++||=+|+|. |.+++.++ ..|+ +|++++.+++-.+.+++    .|.. .++.      .+...    ......
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa-~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~------~d~~~----~~~~~~  184 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAE-KLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE------GSLEA----ALPFGP  184 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHH-HTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE------SCHHH----HGGGCC
T ss_pred             cCccCEEEEcccch-hHHHHHHH-hcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe------ccccc----cccccc
Confidence            57899999999764 66666555 4688 89999999998888764    3432 2222      22222    122238


Q ss_pred             ccEEEEcCCCh---hHHHHHHHHcccCCcEEEEEccC
Q 025336          142 VDYCFECTGVP---SLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       142 ~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ||+|+-.....   ..++.+.+.++|+ |++++.|..
T Consensus       185 fD~V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgil  220 (254)
T d2nxca1         185 FDLLVANLYAELHAALAPRYREALVPG-GRALLTGIL  220 (254)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred             cchhhhccccccHHHHHHHHHHhcCCC-cEEEEEecc
Confidence            99999665432   2356777889999 999986643

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.65  E-value=0.00016  Score=54.08  Aligned_cols=80  Identities=16%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCceE-eCCCCCCCchHHHHHHHhhC-CCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTDF-INPDDEPNKSISELVKGITH-GMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~v-~~~~~~~~~~~~~~i~~~~~-~~~~d~  144 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. ++++..+ .|-.+  .++..+.+.+... -.++|+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iDi   80 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLGRLDG   80 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC--HHHHHHHHHHHHHhcCCceE
Confidence            4789999986 8999999999999999 9999999988877664 4554332 34443  2333333333221 127999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        81 lVnnAG~   87 (242)
T d1ulsa_          81 VVHYAGI   87 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999875

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.64  E-value=0.00028  Score=53.04  Aligned_cols=104  Identities=17%  Similarity=0.303  Sum_probs=68.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-----HhcCCce---EeCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-----EAFGMTD---FINPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+     ++.|...   ..|-.+  .++....+.+... 
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4789999986 8999999999999999 999999998776543     2345432   224443  2333333333221 


Q ss_pred             CCCccEEEEcCCChh-------------------------HHHHHHHHcccC-CcEEEEEccC
Q 025336          139 GMGVDYCFECTGVPS-------------------------LLSEALETTKVG-KGKVIVIGVG  175 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~-~G~~v~~g~~  175 (254)
                      -.++|+++++.|...                         ..+.++..+... +|+++.+++.
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~  143 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  143 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence            127999999988511                         234556666432 3799988764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=5.6e-05  Score=55.93  Aligned_cols=111  Identities=21%  Similarity=0.259  Sum_probs=72.5

Q ss_pred             cccchhhhhhHHHHHhc--CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCc-----
Q 025336           49 FLSCGFTTGFGAAWKEA--EVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMT-----  116 (254)
Q Consensus        49 ~~~~~~~ta~~~l~~~~--~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~-----  116 (254)
                      .++.+...|. ++ +..  .+++|++||-+|+|+ |..++-+|+..|. .+|++++.+++-.+.+++    .+..     
T Consensus        56 ~is~P~~~a~-~l-e~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~  132 (224)
T d1i1na_          56 TISAPHMHAY-AL-ELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG  132 (224)
T ss_dssp             EECCHHHHHH-HH-HHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS
T ss_pred             hhhhhHHHHH-HH-HHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccccc
Confidence            3444444443 33 333  789999999999875 8888888988763 389999999887777643    2211     


Q ss_pred             --eEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          117 --DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       117 --~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                        .+.. .     +..   ........||.|+-+...+...+.+++.|+++ |++|..
T Consensus       133 ~~~~~~-g-----D~~---~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p  180 (224)
T d1i1na_         133 RVQLVV-G-----DGR---MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP  180 (224)
T ss_dssp             SEEEEE-S-----CGG---GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             ceEEEE-e-----ecc---cccchhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence              1111 1     110   01112237999997766554557889999999 999874

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00011  Score=55.18  Aligned_cols=77  Identities=19%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce--EeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD--FINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+.....  +.|...   .+..+...+..  .++|.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~--~~id~l   78 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEV--ERLDVL   78 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHC--SCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeeccc---ccccccccccc--ccceeE
Confidence            5888999986 8999999999999999 9999999988887766543322  334433   55555555443  279999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +++.|.
T Consensus        79 Vn~ag~   84 (245)
T d2ag5a1          79 FNVAGF   84 (245)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            999875

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.63  E-value=3.4e-06  Score=61.48  Aligned_cols=55  Identities=22%  Similarity=0.378  Sum_probs=40.4

Q ss_pred             eccCcceeeEEecCCceEEcCCCCCccccccccchhhhhhHHHHHhcCCCCCCEEEEEcCCHHHH
Q 025336           19 FSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGFGAAWKEAEVEKGSSVAVLGLGTVGL   83 (254)
Q Consensus        19 ~~~g~~a~~~~v~~~~v~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~   83 (254)
                      ...|+|+||+++++..++++|+.++.+.++...+.+.+          +.+++.|||.|+|++|+
T Consensus       141 ~~~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~~~----------v~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         141 MGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQ----------INKAFELLSSGQGVRSI  195 (198)
T ss_dssp             TTTCCSBSEEEEETTSEEEECTTSCGGGGEEEEECGGG----------HHHHHHHTTTSSCSEEE
T ss_pred             CCCccceeeEEecHHHEEECCCCCCHHHHHHhhcchhh----------cCCCCEEEEECCCcceE
Confidence            34589999999999999999999988776654443322          23445688888888775

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.62  E-value=0.0011  Score=49.39  Aligned_cols=80  Identities=15%  Similarity=0.128  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH--HHHHhcCCce---EeCCCCCCCchHHHHHHHhhC-CCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK--EKGEAFGMTD---FINPDDEPNKSISELVKGITH-GMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~--~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~  141 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..++++++.  +.+++.|...   ..|-.+  .++....+.+... ..+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC--HHHHHHHHHHHHHHcCC
Confidence            5788999986 8999999999999999 999998876432  2345666432   224443  2333333333221 127


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++++.|.
T Consensus        81 iDilVnnAG~   90 (247)
T d2ew8a1          81 CDILVNNAGI   90 (247)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.00014  Score=54.34  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce--EeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD--FINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++...  ..|-.+   .+..+.+.+.  -.++|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~--~g~iDi   77 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WDATEKALGG--IGPVDL   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTT--CCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHH--cCCCeE
Confidence            5889999986 8999999999999999 9999999988776654 443222  334444   4433333322  238999


Q ss_pred             EEEcCCC
Q 025336          145 CFECTGV  151 (254)
Q Consensus       145 v~d~~g~  151 (254)
                      ++++.|.
T Consensus        78 lVnnAg~   84 (242)
T d1cyda_          78 LVNNAAL   84 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.61  E-value=0.00037  Score=52.59  Aligned_cols=80  Identities=23%  Similarity=0.314  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      +|+++||+|+ +++|++.++.+...|+ +|+.+++++++.+.+.    +.|...   ..|-.+  .++..+.+.+... -
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5889999986 8999999999999999 9999999988777553    345332   224333  2333333333221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        81 g~iDilVnnaG~   92 (260)
T d1zema1          81 GKIDFLFNNAGY   92 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeehhhhcc
Confidence            279999998874

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.58  E-value=0.00017  Score=54.43  Aligned_cols=79  Identities=18%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHH---HHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISE---LVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~---~i~~~~  137 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.+...   ..|..+  .++..+   .+.+..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~--~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS--RTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC--HHHHHHHHHHHHHHh
Confidence            6889999986 8999999999999999 999999998776654    3345432   234443  122222   233333


Q ss_pred             CCCCccEEEEcCCC
Q 025336          138 HGMGVDYCFECTGV  151 (254)
Q Consensus       138 ~~~~~d~v~d~~g~  151 (254)
                      ++ .+|+++++.|.
T Consensus        82 ~g-~idilinnag~   94 (258)
T d1ae1a_          82 DG-KLNILVNNAGV   94 (258)
T ss_dssp             TS-CCCEEEECCCC
T ss_pred             CC-CcEEEeccccc
Confidence            33 79999998885

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0011  Score=49.84  Aligned_cols=80  Identities=21%  Similarity=0.368  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC-ceE----eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM-TDF----INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~-~~v----~~~~~~~~~~~~~~i~~~~~  138 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+. ..+    .|-.+  +++..+.+.+...
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~--~~~v~~~v~~~~~   85 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            5789999986 8999999999999999 9999999988877643    3332 122    24443  2333333332221


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       ..++|+++++.|.
T Consensus        86 ~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          86 QHSGVDICINNAGL   99 (257)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hcCCCCEEEecccc
Confidence             1279999999875

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.56  E-value=0.00035  Score=52.71  Aligned_cols=79  Identities=19%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhh---
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGIT---  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~---  137 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+...   ..|..+  .++....+.+..   
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL--RPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC--HHHHHHHHHHHHHHh
Confidence            5889999986 8999999999999999 9999999988776653    233221   234443  123333333322   


Q ss_pred             CCCCccEEEEcCCC
Q 025336          138 HGMGVDYCFECTGV  151 (254)
Q Consensus       138 ~~~~~d~v~d~~g~  151 (254)
                      ++ .+|+++++.|.
T Consensus        84 ~g-~idilvnnAG~   96 (259)
T d1xq1a_          84 GG-KLDILINNLGA   96 (259)
T ss_dssp             TT-CCSEEEEECCC
T ss_pred             CC-Ccccccccccc
Confidence            33 69999999985

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.0005  Score=48.89  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cC----C-ceEeCCCCCCCchHHHHHHHhhC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FG----M-TDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g----~-~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      -++.+|||+|+|+.+.+++..+...|+++++.+.+++++.+.+..    ++    . ..+.+..+     .......+  
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--   88 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-----QQAFAEAL--   88 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-----HHHHHHHH--
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc-----ccchhhhh--
Confidence            367899999999999999998889999889999998877665432    22    1 12333332     22221222  


Q ss_pred             CCCccEEEEcCC
Q 025336          139 GMGVDYCFECTG  150 (254)
Q Consensus       139 ~~~~d~v~d~~g  150 (254)
                       ..+|++++|+.
T Consensus        89 -~~~diiIN~Tp   99 (182)
T d1vi2a1          89 -ASADILTNGTK   99 (182)
T ss_dssp             -HTCSEEEECSS
T ss_pred             -cccceeccccC
Confidence             27899999986

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=3.9e-05  Score=57.26  Aligned_cols=101  Identities=21%  Similarity=0.240  Sum_probs=63.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCC---CchHHHHHHHhhCCCCccEE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEP---NKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~i~~~~~~~~~d~v  145 (254)
                      +.+|||+|+ +++|.+.++.+...|+ +|+.+++++++...     ....+......   .....+.+.......++|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQAD-----SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTSS-----EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhccc-----ccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            357999987 9999999999999999 99999888754321     11111111100   01112233333334479999


Q ss_pred             EEcCCChh--------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 025336          146 FECTGVPS--------------------------LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       146 ~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +++.|...                          .....+..++++ |+++.+++...
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~~~  132 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAAAA  132 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccHHh
Confidence            99987400                          234555677888 99999886543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.54  E-value=0.00069  Score=50.47  Aligned_cols=168  Identities=19%  Similarity=0.197  Sum_probs=96.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCceE---eCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDF---INPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~v---~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +|+++||+|+ +++|.+.++-+...|+ +|+.++++.++.+.+ ++++....   .|-++  .++..+.+.+... ..++
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~--~~~i~~~~~~i~~~~g~i   80 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD--PKAVEAVFAEALEEFGRL   80 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCC--HHHHHHHHHHHHHHhCCc
Confidence            5889999987 8999999999999999 999999998877654 45664432   24433  2333333333322 1279


Q ss_pred             cEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccCCCceee-ccH------------
Q 025336          143 DYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGVDTMVP-LNV------------  184 (254)
Q Consensus       143 d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~------------  184 (254)
                      |+.+++.+...                         ..+..+..+... +.++..+.......+ ...            
T Consensus        81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~-~~i~~~ss~a~~~~~~~~~Y~~sK~al~~lt  159 (241)
T d2a4ka1          81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG-GSLVLTGSVAGLGAFGLAHYAAGKLGVVGLA  159 (241)
T ss_dssp             CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-CEEEEECCCTTCCHHHHHHHHHCSSHHHHHH
T ss_pred             cEeccccccccccchhhhhccccccccccccccccccccccccccccc-cceeeccccccccccCccccchhhHHHHHHH
Confidence            99999887421                         233445566666 776666654431111 000            


Q ss_pred             ----HHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCC
Q 025336          185 ----IALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP  245 (254)
Q Consensus       185 ----~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  245 (254)
                          ..+..+++++-....+...+   ....++..+.+.+. ..+..    ....+|+.++..++.+.
T Consensus       160 ~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~-~p~~r----~~~p~dva~~v~fL~S~  222 (241)
T d2a4ka1         160 RTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGA-SPLGR----AGRPEEVAQAALFLLSE  222 (241)
T ss_dssp             HHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHT-STTCS----CBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhC-CCCCC----CcCHHHHHHHHHHHhcc
Confidence                01334567776665544322   11222333333222 11221    22358888888877653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.54  E-value=0.00019  Score=51.47  Aligned_cols=103  Identities=10%  Similarity=-0.004  Sum_probs=66.3

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--e--------EeCCCCC-----CC
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--D--------FINPDDE-----PN  126 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~--------v~~~~~~-----~~  126 (254)
                      +....+.++++||..|+|. |..+..+|++ |+ +|+++|.+++..+.+++....  .        .......     +.
T Consensus        13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHcCCCCCCEEEEecCcC-CHHHHHHHHc-CC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            3556788999999999874 7888888874 99 999999999999998763110  0        0000000     00


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCC--------hhHHHHHHHHcccCCcEEEEEc
Q 025336          127 KSISELVKGITHGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .++....     ...+|.|++...-        ...+..+.+.|+++ |+++...
T Consensus        90 ~~l~~~~-----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~  138 (201)
T d1pjza_          90 FALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT  138 (201)
T ss_dssp             SSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred             ccccccc-----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEE
Confidence            1111111     1278999875432        23567788899999 9876543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00014  Score=52.86  Aligned_cols=96  Identities=15%  Similarity=0.135  Sum_probs=61.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .++|+|+|+ |.+|..+++.+...|. +|.++++++++.......+...+. |..+   .+   .+.+...  ++|+||.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~~~gD~~d---~~---~l~~al~--~~d~vi~   73 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVLQ---AA---DVDKTVA--GQDAVIV   73 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTTS---HH---HHHHHHT--TCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccccccccccccccccc---hh---hHHHHhc--CCCEEEE
Confidence            368999997 9999999998888999 999999998876544444444332 3333   22   2222222  7899999


Q ss_pred             cCCChh----------HHHHHHHHcccC-CcEEEEEcc
Q 025336          148 CTGVPS----------LLSEALETTKVG-KGKVIVIGV  174 (254)
Q Consensus       148 ~~g~~~----------~~~~~~~~l~~~-~G~~v~~g~  174 (254)
                      ++|...          ....+++.++.. -.+++.++.
T Consensus        74 ~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          74 LLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            987521          123444454443 137777654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=3.4e-05  Score=59.20  Aligned_cols=104  Identities=12%  Similarity=0.149  Sum_probs=69.8

Q ss_pred             hHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHH
Q 025336           58 FGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        58 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +..+.+..++++|++||=+|+|. |..+..+++..|+ +|++++.+++..+.+++    .|....+....   .+.    
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~---~d~----  111 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QGW----  111 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCG----
T ss_pred             HHHHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh---hhh----
Confidence            34456788999999999999764 4566778889999 99999999998888765    33211111110   111    


Q ss_pred             HHhhCCCCccEEEE-----cCCCh---hHHHHHHHHcccCCcEEEEEc
Q 025336          134 KGITHGMGVDYCFE-----CTGVP---SLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       134 ~~~~~~~~~d~v~d-----~~g~~---~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ++. .+ .||.|+-     .++.+   ..++.+.+.|+|+ |++++-.
T Consensus       112 ~~~-~~-~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~~  156 (280)
T d2fk8a1         112 EDF-AE-PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQS  156 (280)
T ss_dssp             GGC-CC-CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             hhh-cc-chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEEE
Confidence            111 23 7898863     23322   3578889999999 9998643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=4.1e-05  Score=59.81  Aligned_cols=106  Identities=16%  Similarity=0.175  Sum_probs=69.2

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cC-----------CceE-eCCCC
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FG-----------MTDF-INPDD  123 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g-----------~~~v-~~~~~  123 (254)
                      +.....++||++||=.|+|+ |.+++.+|+..|. .+|+.++.+++..+.+++    ++           .+++ +... 
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~-  167 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK-  167 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES-
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec-
Confidence            44678899999999999876 8889999998875 389999999998888764    11           1111 1111 


Q ss_pred             CCCchHHHHHHHhhCCCCccEEE-EcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          124 EPNKSISELVKGITHGMGVDYCF-ECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                          ++......+.. ..||.|| |.-.....++.+.+.|+|+ |+++.+..
T Consensus       168 ----di~~~~~~~~~-~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~P  213 (324)
T d2b25a1         168 ----DISGATEDIKS-LTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV  213 (324)
T ss_dssp             ----CTTCCC--------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred             ----chhhcccccCC-CCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEeC
Confidence                11111111112 2688887 4333334689999999999 99998753

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.50  E-value=0.00057  Score=51.88  Aligned_cols=104  Identities=21%  Similarity=0.215  Sum_probs=67.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-ccHHH----HHhcCCceEe---CCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-WKKEK----GEAFGMTDFI---NPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~~----~~~~g~~~v~---~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..+++. +..+.    +++.|.+...   |..+  .+++.+.+.+... 
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~--~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV--VEDIVRMFEEAVKI   93 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCC--HHHHHHHHHHHHHH
Confidence            4789999986 8999999999999999 898887664 33332    3455654322   3332  3444444443322 


Q ss_pred             CCCccEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccCC
Q 025336          139 GMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ..++|+++++.+...                         ..+.++..+... |+++.+++..
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~~  155 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSIT  155 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGG
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-cccccccccc
Confidence            127999999887521                         345666677777 8888776543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00027  Score=44.33  Aligned_cols=70  Identities=21%  Similarity=0.300  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW--KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      ++.+|+|+|.|.+|+.+++++...|+ +|++.+....  ..+.++. +....+...+   ...   +      ..+|.++
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~---~~~---~------~~~d~vi   69 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPGLDKLPE-AVERHTGSLN---DEW---L------MAADLIV   69 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTTGGGSCT-TSCEEESBCC---HHH---H------HHCSEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchhHHHHhh-ccceeecccc---hhh---h------ccCCEEE
Confidence            47889999999999999999999999 9999987543  2222222 2222232222   111   1      1678888


Q ss_pred             EcCCCh
Q 025336          147 ECTGVP  152 (254)
Q Consensus       147 d~~g~~  152 (254)
                      -+-|-+
T Consensus        70 ~SPGi~   75 (93)
T d2jfga1          70 ASPGIA   75 (93)
T ss_dssp             ECTTSC
T ss_pred             ECCCCC
Confidence            877765

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.47  E-value=0.00031  Score=53.04  Aligned_cols=80  Identities=16%  Similarity=0.233  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhhC--
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGITH--  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~--  138 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+.    +.|...   ..|..+  .++....+.+...  
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC--HHHHHHHHHHHHHHh
Confidence            5889999986 8999999999999999 9999999988776543    344322   234433  2333333333322  


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      +.++|+++++.|.
T Consensus        84 ~~~idilvnnAG~   96 (259)
T d2ae2a_          84 HGKLNILVNNAGI   96 (259)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCceEEEECCce
Confidence            2269999999885

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00041  Score=52.65  Aligned_cols=42  Identities=19%  Similarity=0.176  Sum_probs=37.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      +|+++||+|+ +++|++.++.+...|+ +|+.+++++++.+.+.
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVV   55 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6899999987 8999999999999999 9999999998887763

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.47  E-value=0.00063  Score=51.02  Aligned_cols=168  Identities=16%  Similarity=0.122  Sum_probs=95.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhh-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      +++.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|...   ..|..+  .++..+.+.+.. ..
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH   85 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            4678899986 8999999998889999 999999998877654    3345332   224443  233333333322 22


Q ss_pred             CCccEEEEcCCChh-------------------------HHHHHHHHc--ccCCcEEEEEccCCC-ceee----ccH---
Q 025336          140 MGVDYCFECTGVPS-------------------------LLSEALETT--KVGKGKVIVIGVGVD-TMVP----LNV---  184 (254)
Q Consensus       140 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l--~~~~G~~v~~g~~~~-~~~~----~~~---  184 (254)
                      .++|+++++.|...                         ..+.++..+  +.+ |++|.+++..+ ...+    +..   
T Consensus        86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~~~~~~~~Y~asKa  164 (251)
T d2c07a1          86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY-GRIINISSIVGLTGNVGQANYSSSKA  164 (251)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCCTTCHHHHHHHH
T ss_pred             CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCC-eEEEEECCHHhcCCCCCCHHHHHHHH
Confidence            38999999887511                         223344444  345 99999886543 1111    000   


Q ss_pred             ----------HHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHcCC
Q 025336          185 ----------IALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP  245 (254)
Q Consensus       185 ----------~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  245 (254)
                                ..+..+++++-....+...+   ....++..+.+.+.. .+.    +....+|+.++..+|.+.
T Consensus       165 al~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~-pl~----R~~~pedvA~~v~fL~S~  233 (251)
T d2c07a1         165 GVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNI-PAG----RMGTPEEVANLACFLSSD  233 (251)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTC-TTS----SCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhcC-CCC----CCcCHHHHHHHHHHHhCc
Confidence                      01334567776665443322   122344444444332 122    223467888888877543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.46  E-value=0.00042  Score=48.40  Aligned_cols=87  Identities=18%  Similarity=0.249  Sum_probs=60.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC-ceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|.|+|+|.+|...+..++..|. +|++.++++++.+.+++.|. +...+..+           .+   ...|+||-|+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~-----------~~---~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS-----------LL---QTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG-----------GG---TTCSEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc-----------cc---cccccccccCc
Confidence            58899999999999988899999 99999999999999888874 33332211           11   27899999887


Q ss_pred             Chh---HHHHHHHHcccCCcEEEEEcc
Q 025336          151 VPS---LLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       151 ~~~---~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...   .++.+...+.++ -.++.+++
T Consensus        67 ~~~~~~vl~~l~~~l~~~-~iv~~~~s   92 (165)
T d2f1ka2          67 IQLILPTLEKLIPHLSPT-AIVTDVAS   92 (165)
T ss_dssp             HHHHHHHHHHHGGGSCTT-CEEEECCS
T ss_pred             Hhhhhhhhhhhhhhcccc-cceeeccc
Confidence            542   233333444554 45555543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=0.00039  Score=53.33  Aligned_cols=105  Identities=12%  Similarity=0.095  Sum_probs=71.3

Q ss_pred             hHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHH
Q 025336           58 FGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELV  133 (254)
Q Consensus        58 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i  133 (254)
                      +..+.++.++++|++||=+|.|- |..+..+|+..|+ +|++++.+++..+.+++    .|....+....   .+.    
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~---~d~----  120 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGW----  120 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE---CCG----
T ss_pred             HHHHHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh---hcc----
Confidence            34455889999999999999763 5677889999999 99999999988777654    44322111111   111    


Q ss_pred             HHhhCCCCccEEEE-----cCCC----------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          134 KGITHGMGVDYCFE-----CTGV----------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       134 ~~~~~~~~~d~v~d-----~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       +...+ .||.|+.     .++.          +..+..+.+.|+|+ |++++-..
T Consensus       121 -~~~~~-~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~i  173 (291)
T d1kpia_         121 -EEFDE-PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTI  173 (291)
T ss_dssp             -GGCCC-CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEEE
T ss_pred             -ccccc-ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEEE
Confidence             11233 7998874     3332          23578889999999 99986443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.45  E-value=0.00034  Score=49.62  Aligned_cols=92  Identities=17%  Similarity=0.147  Sum_probs=60.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeC-------CCCCCCchHHHHHHHhhCCCCcc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN-------PDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~-------~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      .+|.|+|+|.+|++.+..+...|. +|.+.++++++.+.+++.+......       .......+..+.+      ...|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~------~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV------KDAD   74 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH------TTCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh------cCCC
Confidence            589999999999999999999999 9999999999998887655221110       0000001222222      2789


Q ss_pred             EEEEcCCChh---HHHHHHHHcccCCcEEE
Q 025336          144 YCFECTGVPS---LLSEALETTKVGKGKVI  170 (254)
Q Consensus       144 ~v~d~~g~~~---~~~~~~~~l~~~~G~~v  170 (254)
                      ++|-++....   .++.+...+.++ -.++
T Consensus        75 ~iii~v~~~~~~~~~~~i~~~l~~~-~~iv  103 (184)
T d1bg6a2          75 VILIVVPAIHHASIAANIASYISEG-QLII  103 (184)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTT-CEEE
T ss_pred             EEEEEEchhHHHHHHHHhhhccCCC-CEEE
Confidence            9999998652   233344455554 4433

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=9.3e-05  Score=56.76  Aligned_cols=102  Identities=12%  Similarity=0.137  Sum_probs=70.9

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CC-ceE-eCCCCCCCchHHHH
Q 025336           59 GAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GM-TDF-INPDDEPNKSISEL  132 (254)
Q Consensus        59 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~-~~v-~~~~~~~~~~~~~~  132 (254)
                      ..+.++.++++|++||=+|+|- |..++.+++..|+ +|++++.+++..+++++.    |- +.+ +..     .++   
T Consensus        52 ~~~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~-----~d~---  121 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL-----AGW---  121 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE-----SCG---
T ss_pred             HHHHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH-----hhh---
Confidence            3455788999999999999874 7888899999999 999999999988887652    21 111 111     111   


Q ss_pred             HHHhhCCCCccEEEE-----cCCC---hhHHHHHHHHcccCCcEEEEEcc
Q 025336          133 VKGITHGMGVDYCFE-----CTGV---PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       133 i~~~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       +++ ++ .||.++.     .++.   ...+..+.+.|+|+ |++++-..
T Consensus       122 -~~~-~~-~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~~i  167 (285)
T d1kpga_         122 -EQF-DE-PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI  167 (285)
T ss_dssp             -GGC-CC-CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             -hcc-cc-cccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEEEE
Confidence             111 23 7888763     3332   23577888899999 99886443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.41  E-value=0.00098  Score=44.57  Aligned_cols=73  Identities=18%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|+|.|.|.+|...++.+...|. .|++++.++++.+.+++ ++...+. |..+   .+   .+++. +-..+|.++-++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~---~~---~l~~~-~i~~a~~vv~~t   73 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK---IK---TLEDA-GIEDADMYIAVT   73 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS---HH---HHHHT-TTTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhhhccCcccc---hh---hhhhc-ChhhhhhhcccC
Confidence            58999999999999999999999 99999999999988765 5654333 2222   33   23332 334789999888


Q ss_pred             CCh
Q 025336          150 GVP  152 (254)
Q Consensus       150 g~~  152 (254)
                      .+.
T Consensus        74 ~~d   76 (132)
T d1lssa_          74 GKE   76 (132)
T ss_dssp             SCH
T ss_pred             CcH
Confidence            775

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=3.5e-05  Score=56.95  Aligned_cols=115  Identities=17%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             ccccchhhhhhHHHHHh--cCCCCCCEEEEEcCC--HHHHHHHHHHHHcCC---CeEEEEcCCcccHHHHHhc-------
Q 025336           48 SFLSCGFTTGFGAAWKE--AEVEKGSSVAVLGLG--TVGLGAVDGARMQGA---AKIIGIDKNPWKKEKGEAF-------  113 (254)
Q Consensus        48 a~~~~~~~ta~~~l~~~--~~~~~~~~vlI~G~g--~~G~~~~~~a~~~g~---~~v~~v~~~~~~~~~~~~~-------  113 (254)
                      ..++.+...|. ++ +.  ..++++++||.+|+|  -....+.+++...|+   .+|+.++.+++-.+.+++.       
T Consensus        59 ~~is~P~~~a~-~l-~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~  136 (223)
T d1r18a_          59 VTISAPHMHAF-AL-EYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS  136 (223)
T ss_dssp             EEECCHHHHHH-HH-HHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhhhHHH-HH-HHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh
Confidence            34444544443 33 33  378999999999864  333444445555453   2799999988766666431       


Q ss_pred             --CCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          114 --GMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       114 --g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                        +...+....    .+..   ........||.|+-+.+-+..-+..++.|+++ |+++..
T Consensus       137 ~~~~~nv~~~~----~d~~---~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~p  189 (223)
T d1r18a_         137 MLDSGQLLIVE----GDGR---KGYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP  189 (223)
T ss_dssp             HHHHTSEEEEE----SCGG---GCCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             hcCccEEEEEe----cccc---cccccccceeeEEEEeechhchHHHHHhcCCC-cEEEEE
Confidence              211221111    1111   11112338999997776554557888899999 999763

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.41  E-value=0.0003  Score=53.42  Aligned_cols=80  Identities=20%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcC---CceE--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFG---MTDF--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g---~~~v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++   ....  .|-.+  .++....+.+... ..
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            5889999986 8999999999999999 9999999988877653 333   2222  24333  2333333333221 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus        82 ~iD~lVnnAG~   92 (268)
T d2bgka1          82 KLDIMFGNVGV   92 (268)
T ss_dssp             CCCEEEECCCC
T ss_pred             Ccceecccccc
Confidence            89999998873

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.40  E-value=0.00019  Score=51.35  Aligned_cols=101  Identities=22%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC-ceEeCCCCCCCchHHHHHHHh
Q 025336           62 WKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM-TDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      ....++++|++||=+|+|. |..++.+|+. +. +|++++.+++..+.+++    +|. +.+ ....   .+..+..   
T Consensus        26 l~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v-~~~~---gda~~~~---   95 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNV-TLME---GDAPEAL---   95 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEE---SCHHHHH---
T ss_pred             HHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcce-EEEE---Cchhhcc---
Confidence            3567889999999998753 5555666664 45 89999999998888764    453 222 1111   2332222   


Q ss_pred             hCCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEEc
Q 025336          137 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .....||+++-....   ...++.+.+.++++ |+++...
T Consensus        96 ~~~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  134 (186)
T d1l3ia_          96 CKIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (186)
T ss_dssp             TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cccCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEe
Confidence            233489999854432   23577788889999 9987654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=0.00071  Score=50.13  Aligned_cols=72  Identities=19%  Similarity=0.147  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++   +++.+...+. |.+    ++ .+.+.+.. + ++|+++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~---l~~~~~~~~~~Dv~----~~-~~~~~~~~-g-~iD~lV   71 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDLR----KD-LDLLFEKV-K-EVDILV   71 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCTT----TC-HHHHHHHS-C-CCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHH---HHhcCCcEEEcchH----HH-HHHHHHHh-C-CCcEEE
Confidence            4789999986 8999999999999999 99999888654   4455544332 333    22 33333322 2 799999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      ++.|.
T Consensus        72 nnAG~   76 (234)
T d1o5ia_          72 LNAGG   76 (234)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            99875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=0.00042  Score=51.78  Aligned_cols=80  Identities=15%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-hcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-AFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +|+++||+|+ +++|++.++.+...|+ +|+.+++++++.+.+. +++...   ..|..+  .++..+.+++... ..++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   81 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFGGL   81 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC--HHHHHHHHHHHHHHhCCC
Confidence            5889999986 8999999999999999 9999999998877653 454222   234443  2333333333322 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        82 dilinnAG~   90 (244)
T d1nffa_          82 HVLVNNAGI   90 (244)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEECCcc
Confidence            999999985

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.37  E-value=0.00034  Score=52.66  Aligned_cols=80  Identities=18%  Similarity=0.157  Sum_probs=55.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++...   ..|-.+  .++..+.+.+... -.++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   80 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC--HHHHHHHHHHHHHHcCCc
Confidence            5889999986 8999999999999999 999999998877765 4555322   234333  2333333333221 1279


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        81 DilVnnAg~   89 (254)
T d1hdca_          81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecCcc
Confidence            999999875

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=0.0012  Score=50.90  Aligned_cols=104  Identities=21%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc---------cHHHH----HhcCCceEeCCCCCCCchHHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW---------KKEKG----EAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~---------~~~~~----~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|++.+++.+         ..+.+    +..+.....+..+  .++..+.+.
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~v~   82 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS--VEAGEKLVK   82 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC--GGGHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccch--HHHHHHHHH
Confidence            5888999987 8999999999999999 8998876532         22221    2234444444443  133333333


Q ss_pred             Hhh-CCCCccEEEEcCCChh-------------------------HHHHHHHHcc--cCCcEEEEEccCC
Q 025336          135 GIT-HGMGVDYCFECTGVPS-------------------------LLSEALETTK--VGKGKVIVIGVGV  176 (254)
Q Consensus       135 ~~~-~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~  176 (254)
                      +.. ...++|+++++.|...                         ..+.++..+.  .+ |++|.+++..
T Consensus        83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IV~isS~~  151 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY-GRIIMTASAS  151 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCHH
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCC-cEEEEeCChh
Confidence            322 1237999999988511                         2344555553  34 8999888654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.34  E-value=0.0016  Score=42.17  Aligned_cols=93  Identities=10%  Similarity=-0.043  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccc--HHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWK--KEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .|.+|||.|+|.+|..-++.+...|+ +|++++.....  ..++++-.....-...+  +.++          .++++++
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~--~~dl----------~~~~lv~   77 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLTLVEGPFD--ETLL----------DSCWLAI   77 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCEEEESSCC--GGGG----------TTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCceeeccCCC--HHHh----------CCCcEEe
Confidence            47899999999999999999999999 88887654432  22222222222211111  1211          2789999


Q ss_pred             EcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          147 ECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      -+.+....-.......++. |.+|-+...
T Consensus        78 ~at~d~~~n~~i~~~a~~~-~ilVNv~D~  105 (113)
T d1pjqa1          78 AATDDDTVNQRVSDAAESR-RIFCNVVDA  105 (113)
T ss_dssp             ECCSCHHHHHHHHHHHHHT-TCEEEETTC
T ss_pred             ecCCCHHHHHHHHHHHHHc-CCEEEeCCC
Confidence            9998875545666777777 888765543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=0.00026  Score=52.63  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      ++++.+||=+|+|. |..+..+++ .|+ +|++++.+++..+.+++.+....+....   .++     .. ....||+|+
T Consensus        40 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~---~~l-----~~-~~~~fD~ii  107 (246)
T d2avna1          40 LKNPCRVLDLGGGT-GKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA---EDL-----PF-PSGAFEAVL  107 (246)
T ss_dssp             CCSCCEEEEETCTT-CHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT---TSC-----CS-CTTCEEEEE
T ss_pred             cCCCCEEEEECCCC-chhcccccc-cce-EEEEeecccccccccccccccccccccc---ccc-----cc-cccccccee
Confidence            45678999889874 888888876 588 9999999999999999877655554332   222     11 123799988


Q ss_pred             EcCC------C-hhHHHHHHHHcccCCcEEEEE
Q 025336          147 ECTG------V-PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       147 d~~g------~-~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ....      + ...+..+.+.|+++ |.++..
T Consensus       108 ~~~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~  139 (246)
T d2avna1         108 ALGDVLSYVENKDKAFSEIRRVLVPD-GLLIAT  139 (246)
T ss_dssp             ECSSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eecchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence            5432      2 23577888999999 987753

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.31  E-value=0.0018  Score=44.84  Aligned_cols=110  Identities=18%  Similarity=0.162  Sum_probs=70.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      +|-|+|.|.+|...++-+...|. +|++.++++++.+.+++.++.. .       .+..+.++      ..|++|-|+..
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~-~-------~~~~e~~~------~~d~ii~~v~~   66 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET-A-------STAKAIAE------QCDVIITMLPN   66 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-C-------SSHHHHHH------HCSEEEECCSS
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhh-c-------ccHHHHHh------CCCeEEEEcCC
Confidence            47889999999999988888999 9999999999999998887642 2       11222221      57888888876


Q ss_pred             hhHHHHH-------HHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEee
Q 025336          152 PSLLSEA-------LETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGT  197 (254)
Q Consensus       152 ~~~~~~~-------~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~  197 (254)
                      +..++..       ...+.++ -.++.++........--...+..+++++...
T Consensus        67 ~~~v~~v~~~~~~~~~~~~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vda  118 (161)
T d1vpda2          67 SPHVKEVALGENGIIEGAKPG-TVLIDMSSIAPLASREISDALKAKGVEMLDA  118 (161)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred             HHHHHHHHhCCcchhhccCCC-CEEEECCCCCHHHHHHHHHHHHHcCCceecc
Confidence            6555543       3345555 5666665543311111112233455665543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.31  E-value=0.00069  Score=45.44  Aligned_cols=73  Identities=21%  Similarity=0.287  Sum_probs=55.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +++|.|.|.+|..+++.+...|. +|++++.++++.+.++..|...++ |..+   .+....+    +-..+|.++-+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~gd~~~---~~~l~~a----~i~~a~~vi~~~~   73 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANATE---ENELLSL----GIRNFEYVIVAIG   73 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEECCTTC---TTHHHHH----TGGGCSEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceeeeccc---chhhhcc----CCccccEEEEEcC
Confidence            47788999999999999999999 899999999999999888865444 2222   4433322    2237888888777


Q ss_pred             Ch
Q 025336          151 VP  152 (254)
Q Consensus       151 ~~  152 (254)
                      ..
T Consensus        74 ~~   75 (134)
T d2hmva1          74 AN   75 (134)
T ss_dssp             SC
T ss_pred             ch
Confidence            54

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.30  E-value=0.00029  Score=53.08  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=56.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +|+++||+|+ +++|++.++.+...|+ +|+.+++++++.+.+ +++|...   ..|-.+  .++..+.+.+... ..++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD--QASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC--HHHHHHHHHHHHHHhCCc
Confidence            5788999986 8999999999999999 999999998877754 4566433   224443  2333333333221 1289


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        81 DilVnnAg~   89 (256)
T d1k2wa_          81 DILVNNAAL   89 (256)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEeeccc
Confidence            999999885

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.30  E-value=0.0012  Score=49.65  Aligned_cols=103  Identities=17%  Similarity=0.257  Sum_probs=65.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CCcccHHH----HHhcCCceE-e--CCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGID-KNPWKKEK----GEAFGMTDF-I--NPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~-~~~~~~~~----~~~~g~~~v-~--~~~~~~~~~~~~~i~~~~~-  138 (254)
                      .|+++||+|+ +++|.+.++.+...|+ +|+... ++++..+.    +++.|.+.. +  |..+  .++..+.+.+... 
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~--~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK--PSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCC--HHHHHHHHHHHHHH
Confidence            5889999986 8999999999999999 887754 44444443    344665432 2  3332  2333333332221 


Q ss_pred             CCCccEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccC
Q 025336          139 GMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       139 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ..++|+++++.|...                         ..+.++..++.. |.++.+.+.
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s~  142 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSI  142 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Ccccccccc
Confidence            127999999998521                         345666677777 777766543

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.30  E-value=0.00029  Score=52.87  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=53.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCCcccHHHHHhcCCc--eE--eCCCCC-CCchHHHHHHHhhCCCCcc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAA-KIIGIDKNPWKKEKGEAFGMT--DF--INPDDE-PNKSISELVKGITHGMGVD  143 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~-~v~~v~~~~~~~~~~~~~g~~--~v--~~~~~~-~~~~~~~~i~~~~~~~~~d  143 (254)
                      .+|||+|+ +++|.+.++.+...|+. +|+.+.+++++.+.+++....  ++  .|..+. +...+.+.+.+..+..++|
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~id   83 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLS   83 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            68999987 89999998887777862 688888999888887765322  12  244430 0112233333333344699


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +++++.|.
T Consensus        84 ilinnAG~   91 (250)
T d1yo6a1          84 LLINNAGV   91 (250)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcCcc
Confidence            99999884

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.28  E-value=0.0013  Score=49.25  Aligned_cols=75  Identities=19%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC----CceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG----MTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +.||+|+ +++|++.++.+...|+ +|++.+++.++.+.++..+    ...+.+..+  ...+.+.+.+.. | ++|+++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~--~~~~~~~~~~~~-G-~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE--PAELIEAVTSAY-G-QVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS--HHHHHHHHHHHH-S-CCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH--HHHHHHHHHHHc-C-CCCEEE
Confidence            6789987 8999999999999999 9999999988888776532    222333222  233444444433 2 799999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      ++.|.
T Consensus        77 nNAg~   81 (252)
T d1zmta1          77 SNDIF   81 (252)
T ss_dssp             EECCC
T ss_pred             ECCcC
Confidence            87763

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.26  E-value=0.00061  Score=51.09  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCC--c-eE--eCCCCCCCchHHHHHHHhhC-CC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGM--T-DF--INPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~--~-~v--~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      +|+++||+|+ +++|++.++.+...|+ +|+.+++++++.+.+.+ ++.  . ..  .|-.+  .++..+.+.+... ..
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence            5788999986 8999999999999999 99999999888776543 321  1 12  24333  2222222322211 12


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus        82 ~iDiLVnnAg~   92 (251)
T d1zk4a1          82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CceEEEecccc
Confidence            89999999875

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.25  E-value=0.00036  Score=53.21  Aligned_cols=79  Identities=19%  Similarity=0.146  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ +++|...   ..|..+  .++..+.+.+... -.++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i   80 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS--LEDQKQAASRCVARFGKI   80 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc--HHHHHHHHHHHHHHhCCc
Confidence            5889999986 8999999999999999 999999998887665 3455322   224443  1233333332211 1279


Q ss_pred             cEEEEcCC
Q 025336          143 DYCFECTG  150 (254)
Q Consensus       143 d~v~d~~g  150 (254)
                      |+++++.|
T Consensus        81 dilvnnAG   88 (276)
T d1bdba_          81 DTLIPNAG   88 (276)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            99999887

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.25  E-value=0.00027  Score=52.44  Aligned_cols=101  Identities=19%  Similarity=0.203  Sum_probs=68.2

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHH
Q 025336           60 AAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELV  133 (254)
Q Consensus        60 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i  133 (254)
                      .|....++++|++||=+|+|. |..+..+++. +. +|+++|.+++-.+.+++    .+.+.  ++..+.   .++    
T Consensus         7 ~l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~---~~~----   76 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESL----   76 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBC----
T ss_pred             HHHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhccccccccccccccc---ccc----
Confidence            356788999999999999874 7777777774 66 89999999988777754    33322  111111   110    


Q ss_pred             HHhhCCCCccEEEEcCCC------hhHHHHHHHHcccCCcEEEEEc
Q 025336          134 KGITHGMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                       .+.+ ..||+|+-+-.-      ...+..+.+.|+|+ |+++...
T Consensus        77 -~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~~  119 (234)
T d1xxla_          77 -PFPD-DSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLVD  119 (234)
T ss_dssp             -CSCT-TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             -cccc-cccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEEE
Confidence             1112 379999864321      23588889999999 9987753

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00042  Score=52.14  Aligned_cols=80  Identities=16%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-G  139 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  139 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|...   ..|-.+  .++....+.+... -
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~--~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5889999986 8999999999999999 999999998776654    3455432   223333  2333333332221 1


Q ss_pred             CCccEEEEcCCC
Q 025336          140 MGVDYCFECTGV  151 (254)
Q Consensus       140 ~~~d~v~d~~g~  151 (254)
                      .++|+++++.|.
T Consensus        87 g~iDilvnnAG~   98 (255)
T d1fmca_          87 GKVDILVNNAGG   98 (255)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEeeeCCcC
Confidence            279999999875

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.22  E-value=0.0011  Score=49.85  Aligned_cols=84  Identities=23%  Similarity=0.280  Sum_probs=54.5

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH-------HHHHhcCCceE---eCCCCCCCchHHHHHH
Q 025336           66 EVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK-------EKGEAFGMTDF---INPDDEPNKSISELVK  134 (254)
Q Consensus        66 ~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~-------~~~~~~g~~~v---~~~~~~~~~~~~~~i~  134 (254)
                      ..+|+.++||+|+ +++|+..++.+...|+++|+.+.++....       +.++..|....   .|..+  ..+....+.
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d--~~~~~~~~~   82 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD--RESVRELLG   82 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch--HHHHHHhhc
Confidence            4678899999986 99999999888888986677777654222       22334565322   24433  233333334


Q ss_pred             HhhCCCCccEEEEcCCC
Q 025336          135 GITHGMGVDYCFECTGV  151 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~  151 (254)
                      ++....++|.++.+.|.
T Consensus        83 ~i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          83 GIGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             TSCTTSCEEEEEECCCC
T ss_pred             ccccccccccccccccc
Confidence            44444478999998875

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.22  E-value=0.0019  Score=46.45  Aligned_cols=110  Identities=21%  Similarity=0.247  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|+|.|.|.+|..+++++...|+ +|++.+.+.++.+....+|+.. +...     +       +.. ..+|+.+-|
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~-~~~~-----~-------~~~-~~~DI~iPc   90 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA-VALE-----D-------VLS-TPCDVFAPC   90 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-CCGG-----G-------GGG-CCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhcccc-cCcc-----c-------ccc-ccceeeecc
Confidence            68899999999999999999999999 9999999999988888888753 3222     1       112 288999987


Q ss_pred             CCChhHHHHHHHHcccCCcEEEEEccCCCceeecc-HH-HHHhCCCEEEeee
Q 025336          149 TGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLN-VI-ALACGGRTLKGTT  198 (254)
Q Consensus       149 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~-~~~~~~~~i~g~~  198 (254)
                      ..+...-....+.++   .+++ ++.... +.+.+ .. .+..+++.+.+-.
T Consensus        91 A~~~~I~~~~a~~i~---ak~i-~e~AN~-p~~~~~~~~~L~~rgI~~iPD~  137 (201)
T d1c1da1          91 AMGGVITTEVARTLD---CSVV-AGAANN-VIADEAASDILHARGILYAPDF  137 (201)
T ss_dssp             SCSCCBCHHHHHHCC---CSEE-CCSCTT-CBCSHHHHHHHHHTTCEECCHH
T ss_pred             cccccccHHHHhhhh---hhee-eccCCC-CcchhhHHHHhcccceEEEehh
Confidence            765434445555564   3444 444433 23322 22 3556788776643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.17  E-value=9.5e-05  Score=56.66  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=69.3

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELV  133 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i  133 (254)
                      |.....++++++||=+|+|. |..+..+++..|+ +|++++.++...+.+++    .|..   .++..+-   .++    
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~---~~l----  129 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI----  129 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccc---ccc----
Confidence            34566889999999999874 7778888888898 99999999988877765    2321   1221111   111    


Q ss_pred             HHhhCCCCccEEEEcCC-----C-hhHHHHHHHHcccCCcEEEEEcc
Q 025336          134 KGITHGMGVDYCFECTG-----V-PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       134 ~~~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       .+ ....||+|+-.-.     . ...+..+.+.|+|+ |+++....
T Consensus       130 -~~-~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~  173 (282)
T d2o57a1         130 -PC-EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  173 (282)
T ss_dssp             -SS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -cc-cccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence             11 2237999985322     1 23578899999999 99887643

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00072  Score=51.38  Aligned_cols=100  Identities=23%  Similarity=0.328  Sum_probs=63.5

Q ss_pred             CCEE-EEEcC-CHHHHHHHH-HHHHcCCCeEEEEcCCcccHHHHH----hcCCc-e--EeCCCCCCCchH---HHHHHHh
Q 025336           70 GSSV-AVLGL-GTVGLGAVD-GARMQGAAKIIGIDKNPWKKEKGE----AFGMT-D--FINPDDEPNKSI---SELVKGI  136 (254)
Q Consensus        70 ~~~v-lI~G~-g~~G~~~~~-~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~-~--v~~~~~~~~~~~---~~~i~~~  136 (254)
                      |.+| ||+|+ +++|+.+++ +++.-|+ +|+.+++++++.+.+.    +.+.. .  ..|..+  .++.   .+.+.+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~--~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD--LQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCC--HHHHHHHHHHHHHh
Confidence            5677 66686 899998775 5666688 9999999988876543    33432 2  234443  1222   2333332


Q ss_pred             hCCCCccEEEEcCCChh-------------------------HHHHHHHHcccCCcEEEEEccC
Q 025336          137 THGMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      . + ++|+++++.|...                         ..+.++..+++. |+++.+++.
T Consensus        79 ~-g-~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS~  139 (275)
T d1wmaa1          79 Y-G-GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSSI  139 (275)
T ss_dssp             H-S-SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCH
T ss_pred             c-C-CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccccc
Confidence            2 2 7999999988510                         233455567777 999888764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.17  E-value=0.0011  Score=50.69  Aligned_cols=80  Identities=13%  Similarity=0.055  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-----hcCCce-Ee--CCCCCCCchHHHHHHHhh-C
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-----AFGMTD-FI--NPDDEPNKSISELVKGIT-H  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-----~~g~~~-v~--~~~~~~~~~~~~~i~~~~-~  138 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.     +.|... .+  |..+  .++....+.... .
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~--~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD--PDMVQNTVSELIKV  100 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhhhhhhh
Confidence            5799999986 9999999999999999 9999999987765432     234332 22  3333  122222222221 2


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus       101 ~g~iDilvnnAg~  113 (294)
T d1w6ua_         101 AGHPNIVINNAAG  113 (294)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             ccccchhhhhhhh
Confidence            2389999999885

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.15  E-value=0.0015  Score=49.08  Aligned_cols=80  Identities=19%  Similarity=0.178  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----c--CCce---EeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----F--GMTD---FINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~--g~~~---v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      +|+++||+|+ +++|++.++.+...|+ +|+.+++++++.+.+.+    .  +...   ..|..+  .++....+.+...
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC--HHHHHHHHHHHHH
Confidence            5788999986 8999999999999999 99999999887765432    2  2221   124443  2333333333221


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       -.++|+++++.|.
T Consensus        80 ~~G~iDiLVnnAG~   93 (258)
T d1iy8a_          80 RFGRIDGFFNNAGI   93 (258)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HhCCCCEEEECCcc
Confidence             1279999998873

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.001  Score=49.96  Aligned_cols=80  Identities=18%  Similarity=0.208  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-c----C-Cce---EeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-F----G-MTD---FINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~----g-~~~---v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ +    + ...   ..|-.+  .++..+.+.+...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   78 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC--HHHHHHHHHHHHH
Confidence            4789999986 8999999999999999 99999999887765432 1    1 111   224443  2333333333221


Q ss_pred             -CCCccEEEEcCCC
Q 025336          139 -GMGVDYCFECTGV  151 (254)
Q Consensus       139 -~~~~d~v~d~~g~  151 (254)
                       -.++|+++++.|.
T Consensus        79 ~~G~iDilVnnAg~   92 (254)
T d2gdza1          79 HFGRLDILVNNAGV   92 (254)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCcCeecccccc
Confidence             1289999999985

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.15  E-value=0.002  Score=48.31  Aligned_cols=79  Identities=15%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-CC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-GM  140 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~  140 (254)
                      |+..||+|+ +++|++.++.+...|+ +|+.+++++++.+.+    ++.|...   ..|-.+  .++....+.+... -.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            566799986 8999999999999999 999999998776654    3345432   224443  2333333333221 22


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ++|+++++.|.
T Consensus        79 ~iDilVnnAG~   89 (257)
T d2rhca1          79 PVDVLVNNAGR   89 (257)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            79999999875

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=8.7e-05  Score=55.40  Aligned_cols=76  Identities=14%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhC-CCCccEEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITH-GMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  146 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+..    ...|..+  .++..+.+.+... ..++|+++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~--~~~v~~~~~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTD--SDAVDRAFTAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTC--HHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCC--HHHHHHHHHHHHHhcCCceEEE
Confidence            6889999987 8999999999999999 99999998776543221    2234443  1233333332221 12799999


Q ss_pred             EcCCC
Q 025336          147 ECTGV  151 (254)
Q Consensus       147 d~~g~  151 (254)
                      +++|.
T Consensus        79 nnAG~   83 (237)
T d1uzma1          79 SNAGL   83 (237)
T ss_dssp             EECSC
T ss_pred             eeecc
Confidence            99875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.0011  Score=46.50  Aligned_cols=77  Identities=16%  Similarity=0.106  Sum_probs=51.9

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cC---CceEeCCCCCCCchHHHHHHHh
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FG---MTDFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g---~~~v~~~~~~~~~~~~~~i~~~  136 (254)
                      |....-..++.+|+|+|+|+++.+++..+...+. +++++.|+.++.+.+.+ ++   ....+...+            .
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~-~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~------------~   75 (171)
T d1p77a1           9 LQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELAERFQPYGNIQAVSMDS------------I   75 (171)
T ss_dssp             HHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG------------C
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCc-eeeeccchHHHHHHHHHHHhhccccchhhhcc------------c
Confidence            4333334578899999999999999888776554 99999999888776533 32   212221111            1


Q ss_pred             hCCCCccEEEEcCCC
Q 025336          137 THGMGVDYCFECTGV  151 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~  151 (254)
                       .-..+|++++|+..
T Consensus        76 -~~~~~diiIN~tp~   89 (171)
T d1p77a1          76 -PLQTYDLVINATSA   89 (171)
T ss_dssp             -CCSCCSEEEECCCC
T ss_pred             -cccccceeeecccc
Confidence             12389999999875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.12  E-value=0.00068  Score=49.95  Aligned_cols=102  Identities=26%  Similarity=0.246  Sum_probs=68.0

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ....++||++||=+|+|+ |..+..+++..|. .+|++++.+++.++.+++.    +....+....   ... .... . 
T Consensus        67 ~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~---~~~-~~~~-~-  139 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA---TKP-EEYR-A-  139 (227)
T ss_dssp             CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT---TCG-GGGT-T-
T ss_pred             cccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC---CCc-cccc-c-
Confidence            567899999999999875 8888999998874 4899999999988887653    2211121111   111 0011 1 


Q ss_pred             CCCCccEEEEcCCCh----hHHHHHHHHcccCCcEEEEE
Q 025336          138 HGMGVDYCFECTGVP----SLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       138 ~~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ....+|+++..+..+    ..+..+.+.|+++ |+++++
T Consensus       140 ~~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~  177 (227)
T d1g8aa_         140 LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA  177 (227)
T ss_dssp             TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             cccceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence            113788888554432    2467888899999 988765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.12  E-value=0.0025  Score=44.42  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcCC-ceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|+|+|.|.+|...+..++..|. .+|++.+++++..+.+++.+. +......+           ... ....|+++-|+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~-----------~~~-~~~~dlIila~   70 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA-----------KVE-DFSPDFVMLSS   70 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG-----------GGG-GTCCSEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh-----------hhh-ccccccccccC
Confidence            69999999999999988998885 379999999999999999885 44443221           111 12689999988


Q ss_pred             CChh---HHHHHHHHcccCCcEEEEEccCCC
Q 025336          150 GVPS---LLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       150 g~~~---~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ....   .++.+...+.++ -.++.+++...
T Consensus        71 p~~~~~~vl~~l~~~~~~~-~ii~d~~s~k~  100 (171)
T d2g5ca2          71 PVRTFREIAKKLSYILSED-ATVTDQGSVKG  100 (171)
T ss_dssp             CHHHHHHHHHHHHHHSCTT-CEEEECCSCCT
T ss_pred             Cchhhhhhhhhhhcccccc-ccccccccccH
Confidence            8543   344555567776 67777776544

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.0016  Score=48.77  Aligned_cols=80  Identities=16%  Similarity=0.320  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEe--CCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-G--TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFI--NPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g--~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~--~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+..+++++..+.+++    .+....+  |..+  .++....+.+... 
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   83 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ--DEELDALFAGVKEA   83 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCC--HHHHHHHHHHHHHh
Confidence            5889999986 5  799999999999999 89988888765554432    3333333  3332  2333332322211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        84 ~g~iDilVnnag~   96 (256)
T d1ulua_          84 FGGLDYLVHAIAF   96 (256)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             cCCceEEEecccc
Confidence            1279999998874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.10  E-value=0.00068  Score=51.09  Aligned_cols=80  Identities=15%  Similarity=0.197  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-----HhcCCce---EeCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-----EAFGMTD---FINPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+     ++.|...   ..|..+  .++....+.+... 
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN--TDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHH
Confidence            5788999986 8999999999999999 999999998776543     2345432   224443  2333333333321 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        85 ~g~iDilVnnAg~   97 (260)
T d1h5qa_          85 LGPISGLIANAGV   97 (260)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             hCCCcEecccccc
Confidence            2389999998874

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.10  E-value=0.00076  Score=50.87  Aligned_cols=80  Identities=14%  Similarity=0.113  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc-cHH----HHHhcCCceE---eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW-KKE----KGEAFGMTDF---INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~-~~~----~~~~~g~~~v---~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.++++.+ +.+    .+++.|....   .|-.+  .++..+.+.+... 
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~   82 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            5788999986 8999999999999999 9999988754 333    2344564322   24433  2333333333211 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        83 ~G~iDiLVnnAG~   95 (261)
T d1geea_          83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEeecccee
Confidence            1279999999875

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.09  E-value=0.0012  Score=50.17  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC--ce----EeCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM--TD----FINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~--~~----v~~~~~~~~~~~~~~i~~~~  137 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.|.  ..    ..|-.+  .++..+.+.+..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   79 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL   79 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC--HHHHHHHHHHHH
Confidence            5889999986 8999999999999999 9999999988776553    3332  11    224443  233333333322


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . ..++|+++++.|.
T Consensus        80 ~~~G~iDilVnnAG~   94 (274)
T d1xhla_          80 AKFGKIDILVNNAGA   94 (274)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCceEEEeeccc
Confidence            1 1279999998874

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00019  Score=53.19  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce--EeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD--FINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      .+|.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++.....  -+....   .+.......+..+ .||.+
T Consensus        52 ~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK---GLWEDVAPTLPDG-HFDGI  125 (229)
T ss_dssp             TTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE---SCHHHHGGGSCTT-CEEEE
T ss_pred             cCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhccccccccc---ccccccccccccc-cccce
Confidence            5788999999764 7778888887666 8999999999888887643211  011111   2233333333333 79888


Q ss_pred             E-EcCCCh----------hHHHHHHHHcccCCcEEEEE
Q 025336          146 F-ECTGVP----------SLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       146 ~-d~~g~~----------~~~~~~~~~l~~~~G~~v~~  172 (254)
                      + |.+...          ..+..+.+.|+|+ |+++.+
T Consensus       126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~  162 (229)
T d1zx0a1         126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC  162 (229)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred             eecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence            5 655431          2456788899999 998764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.06  E-value=0.0009  Score=50.77  Aligned_cols=80  Identities=11%  Similarity=0.130  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC--c----eEeCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM--T----DFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~--~----~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+    .+.  .    ...|-.+  .++....+.+..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC--HHHHHHHHHHHH
Confidence            5788999986 8999999999999999 99999999888776532    332  1    1224443  233333333322


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . ..++|+++++.|.
T Consensus        81 ~~~g~iDilvnnAG~   95 (272)
T d1xkqa_          81 KQFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCceEEEeCCcc
Confidence            1 1279999999874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.0029  Score=50.47  Aligned_cols=106  Identities=21%  Similarity=0.194  Sum_probs=69.1

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc-----------C----CceEeCCCCCC
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF-----------G----MTDFINPDDEP  125 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~-----------g----~~~v~~~~~~~  125 (254)
                      +.+..++++|+++|=+|+|. |..+.++|+..|+++|++++.++...+.+++.           |    ........+.-
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~  286 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  286 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence            34788999999999899874 99999999999987899999998877777531           1    11111111100


Q ss_pred             CchHHHHHHHhhCCCCccEEEEc-C-CCh---hHHHHHHHHcccCCcEEEEEc
Q 025336          126 NKSISELVKGITHGMGVDYCFEC-T-GVP---SLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       126 ~~~~~~~i~~~~~~~~~d~v~d~-~-g~~---~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ..+.....  +   ..+|+++-. . -.+   ..+..+++.|++| |++|..-
T Consensus       287 ~~~~~d~~--~---~~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~  333 (406)
T d1u2za_         287 DNNRVAEL--I---PQCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK  333 (406)
T ss_dssp             TCHHHHHH--G---GGCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             hccccccc--c---ccceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence            01111111  1   167777742 2 222   2466788889999 9998754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.04  E-value=0.0035  Score=42.84  Aligned_cols=83  Identities=18%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|.++|+|.+|.+.++-+...|..++++.++++++.+.+++ +|.. +.+..+    .       .   ...|++|=|+-
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~----~-------v---~~~Div~lavk   66 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP----E-------L---HSDDVLILAVK   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC----C-------C---CTTSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc----c-------c---cccceEEEecC
Confidence            58899999999988774444453399999999998887654 6654 333222    1       1   25789988887


Q ss_pred             ChhHHHHHHHHcccCCcEEEE
Q 025336          151 VPSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~  171 (254)
                      . ..+...++-+.+. +.+++
T Consensus        67 P-~~~~~v~~~l~~~-~~~vi   85 (152)
T d1yqga2          67 P-QDMEAACKNIRTN-GALVL   85 (152)
T ss_dssp             H-HHHHHHHTTCCCT-TCEEE
T ss_pred             H-HHHHHhHHHHhhc-ccEEe
Confidence            4 3567777777766 66544

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0019  Score=49.58  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH-h----c----CCce---EeCCCCCCCchHHHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE-A----F----GMTD---FINPDDEPNKSISELVKG  135 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~-~----~----g~~~---v~~~~~~~~~~~~~~i~~  135 (254)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +    +    +...   ..|..+  .++....+.+
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~   87 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLVKS   87 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC--HHHHHHHHHH
Confidence            6899999986 8999999999999999 9999999987765542 1    1    2221   123333  2333333333


Q ss_pred             hhC-CCCccEEEEcCCC
Q 025336          136 ITH-GMGVDYCFECTGV  151 (254)
Q Consensus       136 ~~~-~~~~d~v~d~~g~  151 (254)
                      ... ..++|+++++.|.
T Consensus        88 ~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCeEEEEeeccc
Confidence            221 1279999999875

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.03  E-value=0.0015  Score=48.95  Aligned_cols=81  Identities=16%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce----EeCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD----FINPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~----v~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +|+++||+|+ +++|.+.+......|+ +|+++.++.++.+.+.+    .+...    ..|... +..+..+.+.+... 
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTV-PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS-CHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCC-CHHHHHHHHHHHHHH
Confidence            5889999986 8999999988899999 78777677666554432    22211    223321 11223333333221 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ..++|+++++.|.
T Consensus        82 ~g~iDilvnnAG~   94 (254)
T d1sbya1          82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEeCCCC
Confidence            1279999999986

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.98  E-value=0.00065  Score=49.97  Aligned_cols=100  Identities=19%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVK  134 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~  134 (254)
                      +.+..+++++++||=+|+| .|..+..+++. |. +|++++.+++-.+.+++    .+.+.  ++..+.   .++     
T Consensus         7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~---~~l-----   75 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   75 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccc---ccc-----
Confidence            3477899999999999987 47777677654 67 89999999987777654    34332  221111   111     


Q ss_pred             HhhCCCCccEEEEcCC-----C-hhHHHHHHHHcccCCcEEEEEc
Q 025336          135 GITHGMGVDYCFECTG-----V-PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .+.. ..||+|+-.-.     . ...+..+.+.|+|+ |+++...
T Consensus        76 ~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~  118 (231)
T d1vl5a_          76 PFTD-ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD  118 (231)
T ss_dssp             CSCT-TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cccc-cccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEe
Confidence            1122 37999985432     2 24678999999999 9988754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.94  E-value=0.0027  Score=47.09  Aligned_cols=97  Identities=24%  Similarity=0.298  Sum_probs=65.3

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCc-eEeCCCCCCCchHHHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMT-DFINPDDEPNKSISELVKG  135 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~i~~  135 (254)
                      +.......+..+||-+|+|. |..+..+++ .|+ +|++++.+++-.+.+++.    +.. .++..+          +.+
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d----------~~~   99 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGD----------VLE   99 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESC----------GGG
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehh----------hhh
Confidence            34555667778999999875 777777776 688 999999999888887653    322 122211          122


Q ss_pred             hhCCCCccEEEEcCCC------h---hHHHHHHHHcccCCcEEEE
Q 025336          136 ITHGMGVDYCFECTGV------P---SLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~------~---~~~~~~~~~l~~~~G~~v~  171 (254)
                      +.-...||+|+...+.      +   ..+..+.+.|+|+ |.++.
T Consensus       100 l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii  143 (251)
T d1wzna1         100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT  143 (251)
T ss_dssp             CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             cccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence            2233479998864321      1   2567888899999 98875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.93  E-value=0.0028  Score=47.60  Aligned_cols=106  Identities=24%  Similarity=0.281  Sum_probs=65.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc-ccHHHHH-----hcCCceE---eCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP-WKKEKGE-----AFGMTDF---INPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~-~~~~~~~-----~~g~~~v---~~~~~~~~~~~~~~i~~~~~  138 (254)
                      +|+++||+|+ +++|++.++.+...|+ +|+.+++++ ++.+.++     ..|....   .|-.+  .++..+.+.+...
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~   79 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK--GEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS--HHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            5788999986 8999999999999999 999998864 4444332     2343322   23333  2333333332221


Q ss_pred             -CCCccEEEEcCCChh-------------------------HHHHHHHHccc-CCcEEEEEccCCC
Q 025336          139 -GMGVDYCFECTGVPS-------------------------LLSEALETTKV-GKGKVIVIGVGVD  177 (254)
Q Consensus       139 -~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~~  177 (254)
                       -.++|+++++.|...                         ..+.+++.+.. ++|+++.+++..+
T Consensus        80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  145 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHG  145 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccc
Confidence             127999999988511                         23344555543 2289998876543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.90  E-value=0.0023  Score=46.39  Aligned_cols=102  Identities=16%  Similarity=0.021  Sum_probs=65.8

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ...++||++||=+|+|+ |..+..+++..+..+|++++.+++..+.+++    .+-...+..+.   .+... .  ....
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~---~~~~~-~--~~~~  123 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWK-Y--SGIV  123 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGG-T--TTTC
T ss_pred             cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec---cCccc-c--cccc
Confidence            56789999999999875 7778888887775589999999988887754    33222221111   11100 0  0111


Q ss_pred             CCccEEEEcCCCh----hHHHHHHHHcccCCcEEEEEc
Q 025336          140 MGVDYCFECTGVP----SLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       140 ~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ..+|+++......    ..+..+.+.++++ |++++.-
T Consensus       124 ~~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  160 (209)
T d1nt2a_         124 EKVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIMV  160 (209)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ceEEEEEecccChhhHHHHHHHHHHHhccC-CeEEEEE
Confidence            2577777544322    2466777899999 9987753

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.88  E-value=0.00066  Score=50.77  Aligned_cols=78  Identities=18%  Similarity=0.288  Sum_probs=50.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHH---HcCCCeEEEEcCCcccHHHHHhc---CCc-e--EeCCCCCCCchHHH---HHHHhh
Q 025336           71 SSVAVLGL-GTVGLGAVDGAR---MQGAAKIIGIDKNPWKKEKGEAF---GMT-D--FINPDDEPNKSISE---LVKGIT  137 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~---~~g~~~v~~v~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~---~i~~~~  137 (254)
                      ++|||+|+ +++|++.++.+.   ..|+ +|+.+++++++.+.++++   +.. .  ..|..+  .++...   .+++..
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   79 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEGVT   79 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc--HHHHHHHHhhhHHHh
Confidence            47999987 899999886554   4578 999999999887766432   222 2  234443  233333   333333


Q ss_pred             CCCCccEEEEcCCC
Q 025336          138 HGMGVDYCFECTGV  151 (254)
Q Consensus       138 ~~~~~d~v~d~~g~  151 (254)
                      ...++|+++++.|.
T Consensus        80 ~~~~iDiLvnNAg~   93 (248)
T d1snya_          80 KDQGLNVLFNNAGI   93 (248)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             hcCCcceEEeeccc
Confidence            44479999998874

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.85  E-value=0.0093  Score=41.11  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=38.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT  116 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~  116 (254)
                      +|.++|.|.+|...+.-+...|+ +|.+.++++++.+.++..+..
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~   46 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGAS   46 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcc
Confidence            68899999999988887788899 999999999999888877754

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.83  E-value=0.0022  Score=47.25  Aligned_cols=103  Identities=19%  Similarity=0.116  Sum_probs=65.4

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC----CceEeCCCCCCCchHHHHHHHhhC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG----MTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ....+++|++||=+|+|. |..+..+++.....+|++++.+++.++.+++..    ....+....   ..... ..  ..
T Consensus        68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~---~~~~~-~~--~~  140 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQE-YA--NI  140 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGG-GT--TT
T ss_pred             HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee---ccCcc-cc--cc
Confidence            567899999999999864 777788888654458999999999888876532    112221111   11111 01  11


Q ss_pred             CCCccEEEEcCCCh----hHHHHHHHHcccCCcEEEEEc
Q 025336          139 GMGVDYCFECTGVP----SLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       139 ~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ...+|+++......    ..+..+.+.|+++ |++++.-
T Consensus       141 ~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~~  178 (230)
T d1g8sa_         141 VEKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIAI  178 (230)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEEe
Confidence            12456666554422    2367778889999 9887653

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.83  E-value=0.001  Score=50.18  Aligned_cols=80  Identities=14%  Similarity=0.133  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC--c--e--EeCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM--T--D--FINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~--~--~--v~~~~~~~~~~~~~~i~~~~  137 (254)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+.  .  .  ..|..+  .++..+.+.+..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   80 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC--HHHHHHHHHHHH
Confidence            5788899986 8999999999999999 9999999988776653    2331  1  1  224443  123333333322


Q ss_pred             C-CCCccEEEEcCCC
Q 025336          138 H-GMGVDYCFECTGV  151 (254)
Q Consensus       138 ~-~~~~d~v~d~~g~  151 (254)
                      . -.++|+++++.|.
T Consensus        81 ~~~g~iDilvnnAG~   95 (264)
T d1spxa_          81 GKFGKLDILVNNAGA   95 (264)
T ss_dssp             HHHSCCCEEEECCC-
T ss_pred             HHhCCCCEeeccccc
Confidence            1 1289999999874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0059  Score=41.96  Aligned_cols=92  Identities=24%  Similarity=0.291  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .-.|++++|.|-|-+|.-.++.++.+|+ +|++++.++.+.-.+.--|.. +.        .+.+.+      ...|+++
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~-v~--------~~~~a~------~~adivv   84 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYE-VT--------TMDEAC------QEGNIFV   84 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CHHHHT------TTCSEEE
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceE-ee--------ehhhhh------hhccEEE
Confidence            4489999999999999999999999999 999999988665444444533 21        111111      2678999


Q ss_pred             EcCCChh-HHHHHHHHcccCCcEEEEEccC
Q 025336          147 ECTGVPS-LLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       147 d~~g~~~-~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      -++|... .-..-++.|+++ ..++-.|..
T Consensus        85 taTGn~~vI~~eh~~~MKdg-aIL~N~Ghf  113 (163)
T d1li4a1          85 TTTGCIDIILGRHFEQMKDD-AIVCNIGHF  113 (163)
T ss_dssp             ECSSCSCSBCHHHHTTCCTT-EEEEECSSS
T ss_pred             ecCCCccchhHHHHHhccCC-eEEEEeccc
Confidence            9999754 345777788887 555555544

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.81  E-value=0.0074  Score=44.70  Aligned_cols=163  Identities=16%  Similarity=0.077  Sum_probs=88.9

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-CCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGID-KNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-GMG  141 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~-~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~  141 (254)
                      .+||+|+ +++|++.++.+...|+ +|+..+ ++++..+.+    ++.|...   ..|..+  .++..+.+.+... ..+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHSSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHHHHHHcCC
Confidence            5678886 8999999999999999 887764 455555443    3355432   224443  2333333333221 238


Q ss_pred             ccEEEEcCCChh-------------------------HHHHHHHHc--ccCCcEEEEEccCCC-ceee-ccH--------
Q 025336          142 VDYCFECTGVPS-------------------------LLSEALETT--KVGKGKVIVIGVGVD-TMVP-LNV--------  184 (254)
Q Consensus       142 ~d~v~d~~g~~~-------------------------~~~~~~~~l--~~~~G~~v~~g~~~~-~~~~-~~~--------  184 (254)
                      +|+++++.|...                         ..+.++..+  +.+ |++|.+++..+ ...+ ...        
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~~~~~~~~Y~asKaal  158 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVVGLIGNIGQANYAAAKAGV  158 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcChhhcCCCCCCHHHHHHHHHH
Confidence            999999987511                         234455555  345 99999887543 1111 000        


Q ss_pred             --------HHHHhCCCEEEeeecCCCCC---CCCHHHHHHHHhCCCCCCCCceEEEeecccHHHHHHHHc
Q 025336          185 --------IALACGGRTLKGTTFGGIKT---KSDLPILLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLK  243 (254)
Q Consensus       185 --------~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  243 (254)
                              ..+..+++++-....+...+   ....++..+.+.+.. .+.    +....+|+.++..+|.
T Consensus       159 ~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~-pl~----R~~~p~dvA~~v~fLa  223 (244)
T d1edoa_         159 IGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTI-PLG----RTGQPENVAGLVEFLA  223 (244)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSC-TTC----SCBCHHHHHHHHHHHH
T ss_pred             HHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcC-CCC----CCcCHHHHHHHHHHHH
Confidence                    02334567777666543322   112223333333321 122    2234678888888773

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.79  E-value=0.0021  Score=49.96  Aligned_cols=105  Identities=25%  Similarity=0.198  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh-CCC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT-HGM  140 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~-~~~  140 (254)
                      .+++|++||=.++|. |..++.+++ .|+.+|++++.+++..+.+++    .|...-+....   .+..+.+..+. .+.
T Consensus       142 ~~~~g~~VLDl~~g~-G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~---~d~~~~~~~~~~~~~  216 (324)
T d2as0a2         142 WVQPGDRVLDVFTYT-GGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV---GSAFEEMEKLQKKGE  216 (324)
T ss_dssp             GCCTTCEEEETTCTT-THHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHTTC
T ss_pred             hcCCCCeeecccCcc-cchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee---chhhhhhHHHHhccC
Confidence            357899998776532 344444444 477689999999998888765    45421111111   34444444332 345


Q ss_pred             CccEEEEcCC---C------------hhHHHHHHHHcccCCcEEEEEccCC
Q 025336          141 GVDYCFECTG---V------------PSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       141 ~~d~v~d~~g---~------------~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .||+|+--..   .            ...+..++++++|+ |.++.+....
T Consensus       217 ~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s~  266 (324)
T d2as0a2         217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCSQ  266 (324)
T ss_dssp             CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECCT
T ss_pred             CCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCCc
Confidence            8999984221   1            11456777889999 9999887654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.78  E-value=0.0047  Score=46.14  Aligned_cols=77  Identities=17%  Similarity=0.101  Sum_probs=51.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH----HhcCCce---EeCCCCCCCchHHHHHHHhhC-CCCc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG----EAFGMTD---FINPDDEPNKSISELVKGITH-GMGV  142 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  142 (254)
                      .+||+|+ +++|++.++.+...|+ +|+.+++++++.+.+    ++.|...   ..|-.+  .++....+.+... -.++
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHTTCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHhCCc
Confidence            4588886 8999999988888999 999999998877654    3345432   224443  2333333333321 2379


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+++++.|.
T Consensus        80 DilVnnAG~   88 (255)
T d1gega_          80 DVIVNNAGV   88 (255)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecccc
Confidence            999999875

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.69  E-value=0.0027  Score=48.44  Aligned_cols=97  Identities=14%  Similarity=0.124  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC---------c-eEeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM---------T-DFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~---------~-~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .-++|||+|+|. |..+-.++++.+..++.+++.+++-.+.++++-.         . .++.      .|..+.+++...
T Consensus        80 ~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~------~Da~~~l~~~~~  152 (290)
T d1xj5a_          80 NPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNAAE  152 (290)
T ss_dssp             CCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTSCT
T ss_pred             CCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE------ccHHHHHhhccc
Confidence            446899998654 5566677888787689999999998888877431         1 1221      445566655443


Q ss_pred             CCCccEEE-EcCCC---------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       ..||+|+ |....         ...++.+.++|+++ |.++.-..
T Consensus       153 -~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~  196 (290)
T d1xj5a_         153 -GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQAE  196 (290)
T ss_dssp             -TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             -cCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEecC
Confidence             3899888 55432         22578888999999 98887543

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.65  E-value=0.015  Score=40.41  Aligned_cols=99  Identities=21%  Similarity=0.224  Sum_probs=63.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEc-CCc-ccHHHHHhcCCceEeCCCCCCCchHHHHHHHhh---C------C
Q 025336           72 SVAVLGLGTVGLGAVDGARMQG-AAKIIGID-KNP-WKKEKGEAFGMTDFINPDDEPNKSISELVKGIT---H------G  139 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~-~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~---~------~  139 (254)
                      +|.|.|-|-+|+..++.+.... . +++++- .++ +....+..++.+......    ... ....+..   .      -
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~   77 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASE----EFI-PRFEKEGFEVAGTLNDLL   77 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSG----GGH-HHHHHHTCCCSCBHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccc----cce-eeecccCccccchhhhhh
Confidence            6889999999999998877543 4 666653 222 344456666654433221    111 1111100   0      1


Q ss_pred             CCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       140 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .++|+|+||+|.-...+.+-..+..+ -+.|..+.+..
T Consensus        78 ~~vDvViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~~~  114 (172)
T d2czca2          78 EKVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEKA  114 (172)
T ss_dssp             TTCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTSCG
T ss_pred             ccCCEEEECCCCCCCHHHHHHHHHcC-CCEEEECCCCc
Confidence            27999999999876777888888888 88888887654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0019  Score=44.78  Aligned_cols=88  Identities=17%  Similarity=0.180  Sum_probs=56.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce-----EeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD-----FINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~-----v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +|+|+|+|.+|.+....+...|. +|..+++++++.+..+..+.+.     .+...      ..+.+      ..+|++|
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~D~ii   68 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTAN------DPDFL------ATSDLLL   68 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEES------CHHHH------HTCSEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccc------hhhhh------cccceEE
Confidence            68999999999998888888999 9999999887665443333211     11111      11111      1789999


Q ss_pred             EcCCChhHHHHHHH----HcccCCcEEEEEcc
Q 025336          147 ECTGVPSLLSEALE----TTKVGKGKVIVIGV  174 (254)
Q Consensus       147 d~~g~~~~~~~~~~----~l~~~~G~~v~~g~  174 (254)
                      -++-... ++..++    .+.++ ..++.+..
T Consensus        69 i~vka~~-~~~~~~~l~~~~~~~-~~Iv~~qN   98 (167)
T d1ks9a2          69 VTLKAWQ-VSDAVKSLASTLPVT-TPILLIHN   98 (167)
T ss_dssp             ECSCGGG-HHHHHHHHHTTSCTT-SCEEEECS
T ss_pred             Eeecccc-hHHHHHhhccccCcc-cEEeeccC
Confidence            9998763 344444    44455 55666543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.61  E-value=0.027  Score=38.05  Aligned_cols=89  Identities=19%  Similarity=0.245  Sum_probs=58.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCCccc---HHHHHhcCCceEeCCCCCCCchHHHHH-----------
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQ--GAAKIIGIDKNPWK---KEKGEAFGMTDFINPDDEPNKSISELV-----------  133 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~--g~~~v~~v~~~~~~---~~~~~~~g~~~v~~~~~~~~~~~~~~i-----------  133 (254)
                      .+|.|+|+ |++|..++++.+..  .+ +|++..+...-   .+.++++.+..++-.++    .....+           
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~----~~~~~l~~~~~~~~~~v   77 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADP----SLYNDLKEALAGSSVEA   77 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCG----GGHHHHHHHTTTCSSEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccH----HHHHHHHHHhhhccccc
Confidence            57999998 99999999999975  46 77777666432   22346677776554332    122222           


Q ss_pred             -------HHhhCCCCccEEEEcCCChhHHHHHHHHcccC
Q 025336          134 -------KGITHGMGVDYCFECTGVPSLLSEALETTKVG  165 (254)
Q Consensus       134 -------~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~  165 (254)
                             .+... ..+|+++.++.+...+.-.+.++..+
T Consensus        78 ~~g~~~l~~~~~-~~~D~vv~Ai~G~~GL~~tl~ai~~g  115 (150)
T d1r0ka2          78 AAGADALVEAAM-MGADWTMAAIIGCAGLKATLAAIRKG  115 (150)
T ss_dssp             EESHHHHHHHHT-SCCSEEEECCCSGGGHHHHHHHHHTT
T ss_pred             ccCccchheecc-cccceeeeecCchhHHHHHHHHHhcC
Confidence                   22222 25788888776666777777777765

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0068  Score=45.14  Aligned_cols=82  Identities=18%  Similarity=0.221  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh-CCC
Q 025336           69 KGSSVAVLGL-G--TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT-HGM  140 (254)
Q Consensus        69 ~~~~vlI~G~-g--~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~-~~~  140 (254)
                      +|+++||+|+ +  ++|.+.+..+...|+ +|+.++++++..+.+++    .+....+.....+..+......+.. ...
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            6899999986 5  689999999999999 89999998766555433    3433333222211233333333332 233


Q ss_pred             CccEEEEcCCC
Q 025336          141 GVDYCFECTGV  151 (254)
Q Consensus       141 ~~d~v~d~~g~  151 (254)
                      ..|+.+++.+.
T Consensus        83 ~~d~~v~~a~~   93 (258)
T d1qsga_          83 KFDGFVHSIGF   93 (258)
T ss_dssp             SEEEEEECCCC
T ss_pred             ccceEEEeecc
Confidence            78999988754

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.60  E-value=0.011  Score=43.57  Aligned_cols=103  Identities=15%  Similarity=0.097  Sum_probs=64.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCC------eEEEEcCCcccHHHHH----hcCCce---EeCCCCCCCchHHHHHHHhh
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAA------KIIGIDKNPWKKEKGE----AFGMTD---FINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~------~v~~v~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~  137 (254)
                      .|||+|+ +++|++.++.+...|++      .|+..++++++.+.+.    +.|...   ..|..+  .++..+.+.+..
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD--MADVRRLTTHIV   80 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHH
Confidence            4788886 89999999888888983      2888889888776553    345332   224443  233333333322


Q ss_pred             -CCCCccEEEEcCCChh-------------------------HHHHHHHHcc--cCCcEEEEEccCCC
Q 025336          138 -HGMGVDYCFECTGVPS-------------------------LLSEALETTK--VGKGKVIVIGVGVD  177 (254)
Q Consensus       138 -~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~~  177 (254)
                       .-.++|+++++.|...                         ..+.++..+.  .+ |+++.+++..+
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Ii~isS~~~  147 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS-GHIFFITSVAA  147 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGG
T ss_pred             HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCC-CceEEEechhh
Confidence             1237999999988511                         2344555553  35 89998876543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0045  Score=45.38  Aligned_cols=108  Identities=7%  Similarity=-0.047  Sum_probs=65.4

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-------------eEeCCCCCCCchH
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-------------DFINPDDEPNKSI  129 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-------------~v~~~~~~~~~~~  129 (254)
                      ....+.++.+||..|+|. |..+..+|+ .|+ +|+++|.+++-.+.+++....             ...........-.
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  115 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY  115 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence            334567889999999875 777777776 699 999999999888877652211             0000000000000


Q ss_pred             HHHHHHh--hCCCCccEEEEcCCC--------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          130 SELVKGI--THGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       130 ~~~i~~~--~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...+..+  .....+|+|+++..-        +..+..+.++++|+ |++++...
T Consensus       116 ~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~~  169 (229)
T d2bzga1         116 CCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCVL  169 (229)
T ss_dssp             ESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence            0001111  122378999986531        23567888999999 98766543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.59  E-value=0.0044  Score=46.69  Aligned_cols=80  Identities=13%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh---cC-CceE--eCCCCCCCchHHHHHHHhhC-
Q 025336           69 KGSSVAVLGL-G--TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA---FG-MTDF--INPDDEPNKSISELVKGITH-  138 (254)
Q Consensus        69 ~~~~vlI~G~-g--~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~---~g-~~~v--~~~~~~~~~~~~~~i~~~~~-  138 (254)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+.++++++..+.+++   .+ ...+  .+..+  ..+..+.+.+... 
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   80 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK--EEHFKSLYNSVKKD   80 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccc--hhhHHHHHHHHHHH
Confidence            5899999985 5  799999999999999 99999998654444432   22 2222  23332  1333333322221 


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      -..+|+++.+.|.
T Consensus        81 ~g~id~lV~nag~   93 (274)
T d2pd4a1          81 LGSLDFIVHSVAF   93 (274)
T ss_dssp             TSCEEEEEECCCC
T ss_pred             cCCCCeEEeeccc
Confidence            2379999988874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.55  E-value=0.016  Score=40.36  Aligned_cols=43  Identities=16%  Similarity=0.215  Sum_probs=37.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG  114 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g  114 (254)
                      .+|-++|.|.+|..++.-+...|+ +|++.++++++.+.+.+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~   45 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANE   45 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhc
Confidence            468899999999998888888999 9999999999988876654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.017  Score=44.76  Aligned_cols=104  Identities=18%  Similarity=0.198  Sum_probs=68.1

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc-----------C----CceEeCCCCCC
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF-----------G----MTDFINPDDEP  125 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~-----------g----~~~v~~~~~~~  125 (254)
                      +....+++++++||=+|+|. |..+.++|+..++.++++++.+++..+.+++.           |    .-.++..+- .
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~-~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-L  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT-T
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc-c
Confidence            44788999999999999874 88899999999987899999999877776431           2    111221111 0


Q ss_pred             CchHHHHHHHhhCCCCccEEEEc-C-CCh---hHHHHHHHHcccCCcEEEEEc
Q 025336          126 NKSISELVKGITHGMGVDYCFEC-T-GVP---SLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       126 ~~~~~~~i~~~~~~~~~d~v~d~-~-g~~---~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ..++.+.+.      .+|+++-. . -.+   ..+....+.|++| |++|..-
T Consensus       221 ~~~~~~~~~------~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~  266 (328)
T d1nw3a_         221 SEEWRERIA------NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK  266 (328)
T ss_dssp             SHHHHHHHH------HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             ccccccccC------cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence            122222221      45777732 2 122   2356677789999 9998754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.55  E-value=0.01  Score=40.44  Aligned_cols=85  Identities=14%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|.++|+|.+|.+.+.-....|. ++++.++++++.+.+ +++|...+        .+..+.+.      ..|+||-|+-
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~--------~~~~~~~~------~~dvIilavk   66 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYA--------MSHQDLID------QVDLVILGIK   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBC--------SSHHHHHH------TCSEEEECSC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeee--------chhhhhhh------ccceeeeecc
Confidence            57889999999998887777787 899999998887765 55675432        11222221      6889998886


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEc
Q 025336          151 VPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .. .++..++.+.++ -.++.+.
T Consensus        67 p~-~~~~vl~~l~~~-~~iis~~   87 (152)
T d2ahra2          67 PQ-LFETVLKPLHFK-QPIISMA   87 (152)
T ss_dssp             GG-GHHHHHTTSCCC-SCEEECC
T ss_pred             hH-hHHHHhhhcccc-eeEeccc
Confidence            54 678888888776 6665444

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.53  E-value=0.0043  Score=45.28  Aligned_cols=72  Identities=19%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAA-KIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~-~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .+|||+|+ |.+|..+++.+...|.. .|+...+++++...+.. +...+ .|..+   .+.   +.+...  ++|.++.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~---~~~---~~~~~~--~~d~vi~   74 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITD---ADS---INPAFQ--GIDALVI   74 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTS---HHH---HHHHHT--TCSEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeecc---ccc---cccccc--cceeeEE
Confidence            58999986 99999999999988862 46666677665544322 22222 23332   222   222222  7899998


Q ss_pred             cCCC
Q 025336          148 CTGV  151 (254)
Q Consensus       148 ~~g~  151 (254)
                      +.+.
T Consensus        75 ~a~~   78 (252)
T d2q46a1          75 LTSA   78 (252)
T ss_dssp             CCCC
T ss_pred             EEee
Confidence            8763

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.52  E-value=0.018  Score=39.34  Aligned_cols=95  Identities=17%  Similarity=0.223  Sum_probs=55.7

Q ss_pred             CEEEEEcCCHHHH-HHHHHHHHcCCCeEEEE-cCCcc--cHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           71 SSVAVLGLGTVGL-GAVDGARMQGAAKIIGI-DKNPW--KKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        71 ~~vlI~G~g~~G~-~~~~~a~~~g~~~v~~v-~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      =+|.|+|+|.+|. ...++.+.....+++++ +++.+  +..+++++|.....       . ..+.+.+.....++|+||
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~-------~-~~d~l~~~~~~~~iDiVf   76 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------A-GVEGLIKLPEFADIDFVF   76 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------S-HHHHHHHSGGGGGEEEEE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc-------c-ceeeeeecccccccCEEE
Confidence            3689999999987 56788776544366666 44443  34567788865322       2 222333322223799999


Q ss_pred             EcCCChhHHHHH--HHHcccCCcEEEEEcc
Q 025336          147 ECTGVPSLLSEA--LETTKVGKGKVIVIGV  174 (254)
Q Consensus       147 d~~g~~~~~~~~--~~~l~~~~G~~v~~g~  174 (254)
                      +++......+..  .+.+..+ -.+++...
T Consensus        77 ~ATpag~h~~~~~~~~aa~~G-~~VID~s~  105 (157)
T d1nvmb1          77 DATSASAHVQNEALLRQAKPG-IRLIDLTP  105 (157)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEECST
T ss_pred             EcCCchhHHHhHHHHHHHHcC-CEEEEccc
Confidence            998754344433  4445544 44555443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.0013  Score=50.38  Aligned_cols=98  Identities=15%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhc----CCc-----eEeCCCCCCCchHHHHHHH
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAF----GMT-----DFINPDDEPNKSISELVKG  135 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~----g~~-----~v~~~~~~~~~~~~~~i~~  135 (254)
                      .+.+++.+||-+|+|. |..+..+++. |+ +|++++.+++-++.+++.    +..     ..+..     .++...-..
T Consensus        52 l~~~~~~~vLD~GcG~-G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  123 (292)
T d1xvaa_          52 LRQHGCHRVLDVACGT-GVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE-----ANWLTLDKD  123 (292)
T ss_dssp             HHHTTCCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE-----CCGGGHHHH
T ss_pred             hhhcCCCEEEEecCCC-cHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeee-----ccccccccc
Confidence            3445678999888874 7888888875 88 999999999988877642    211     01110     111111122


Q ss_pred             hhCCCCccEEEEcCCC--------------hhHHHHHHHHcccCCcEEEE
Q 025336          136 ITHGMGVDYCFECTGV--------------PSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~  171 (254)
                      ......||.|+.....              ...+..+.+.|+|+ |.++.
T Consensus       124 ~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~  172 (292)
T d1xvaa_         124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI  172 (292)
T ss_dssp             SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred             cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence            3334489999853211              12578888999999 98876

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.46  E-value=0.0043  Score=40.36  Aligned_cols=67  Identities=7%  Similarity=0.182  Sum_probs=46.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      .++..++|+|.|+|.+|.=+++.+..+|. +|..+.+.+.            ++..-+   ++..+.+.+.....++++.
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~------------il~~~d---~~~~~~~~~~l~~~gV~i~   81 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNR------------ILRKFD---ESVINVLENDMKKNNINIV   81 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSS------------SCTTSC---HHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhcc------------cccccc---HHHHHHHHHHHHhCCCEEE
Confidence            34445789999999999999999999999 9999976642            122222   5555655554433477776


Q ss_pred             EEc
Q 025336          146 FEC  148 (254)
Q Consensus       146 ~d~  148 (254)
                      .++
T Consensus        82 ~~~   84 (117)
T d1onfa2          82 TFA   84 (117)
T ss_dssp             CSC
T ss_pred             ECC
Confidence            653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.41  E-value=0.0075  Score=44.11  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHhh--
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGIT--  137 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~--  137 (254)
                      .+.....+||-+|.+ +|..++.+|+.+.- .+++.++.+++..+.+++    .|...-+....   .+..+.+.++.  
T Consensus        55 ~~~~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~---g~a~~~L~~l~~~  130 (227)
T d1susa1          55 LKLINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIKD  130 (227)
T ss_dssp             HHHHTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHC
T ss_pred             HHhcCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee---hHHHHHHHHHHhc
Confidence            344456799999864 47788888886642 399999999998888765    45433222222   33444444432  


Q ss_pred             --CCCCccEEE-EcCCC--hhHHHHHHHHcccCCcEEEEE
Q 025336          138 --HGMGVDYCF-ECTGV--PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       138 --~~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~  172 (254)
                        ....||+|| |+--.  ...++.+++.++++ |.++.=
T Consensus       131 ~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~D  169 (227)
T d1susa1         131 EKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYD  169 (227)
T ss_dssp             GGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEE
T ss_pred             cccCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEc
Confidence              223799999 54433  23578999999998 887653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0034  Score=40.46  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=45.6

Q ss_pred             CCCC-CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           67 VEKG-SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        67 ~~~~-~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      +.++ .+|.|+|+|-+|+++++-|+.+|. ++++.+.+++.-  +.......+ .++++   .+....+...   .++|+
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~~P--A~~va~~~i~~~~~d---~~~l~~~~~~---~~~Dv   77 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYADAP--AMHVAHRSHVINMLD---GDALRRVVEL---EKPHY   77 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTTCG--GGGGSSEEEECCTTC---HHHHHHHHHH---HCCSE
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCCCc--hhhcCCeEEECCCCC---HHHHHHHHHh---hCCce
Confidence            3444 469999999999999999999999 999998876532  333443333 35554   4333332221   26677


Q ss_pred             E
Q 025336          145 C  145 (254)
Q Consensus       145 v  145 (254)
                      +
T Consensus        78 i   78 (111)
T d1kjqa2          78 I   78 (111)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0039  Score=46.28  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=39.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-HhcCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAFGM  115 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~g~  115 (254)
                      +|.++||+|+ +++|.+.++-+...|+ +|+.+++++++.+.+ ++++.
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            6889999986 8999999999999999 999999998887764 44553

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.33  E-value=0.0022  Score=45.59  Aligned_cols=36  Identities=19%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      +++|+|+|+|+.|+.++..++..|+..|+++++++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            578999999999999999999999855888887754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.31  E-value=0.049  Score=36.70  Aligned_cols=87  Identities=14%  Similarity=0.083  Sum_probs=58.0

Q ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCC-CccEEEEc
Q 025336           71 SSVAVLG-LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGM-GVDYCFEC  148 (254)
Q Consensus        71 ~~vlI~G-~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~-~~d~v~d~  148 (254)
                      .+|.|+| .|.+|...+..++..|+ +|.+.+++++........+++.++....  .......+.+..... .=.+++|+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~   86 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP--INLTLETIERLKPYLTENMLLADL   86 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc--hhhheeeeecccccccCCceEEEe
Confidence            5799999 69999999999999999 9999999887766665566666554432  244444444443321 22477787


Q ss_pred             CCChhHHHHHHH
Q 025336          149 TGVPSLLSEALE  160 (254)
Q Consensus       149 ~g~~~~~~~~~~  160 (254)
                      .+....+...+.
T Consensus        87 ~Svk~~~~~~~~   98 (152)
T d2pv7a2          87 TSVKREPLAKML   98 (152)
T ss_dssp             CSCCHHHHHHHH
T ss_pred             cccCHHHHHHHH
Confidence            765433333333

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.043  Score=37.07  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCCcccHH---HHHhcCCceEeCCCCCCCchHH---------------
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQ--GAAKIIGIDKNPWKKE---KGEAFGMTDFINPDDEPNKSIS---------------  130 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~--g~~~v~~v~~~~~~~~---~~~~~g~~~v~~~~~~~~~~~~---------------  130 (254)
                      +|.|+|+ |++|..++.+.+..  .+ +|++......-..   .++++.+..++-.++   ....               
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~---~~~~~l~~~l~~~~~~~~~   78 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDE---ASAKLLKTMLQQQGSRTEV   78 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSH---HHHHHHHHHHHHTTCCCEE
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccH---HHHHHHHHHhhhhcccccc
Confidence            6889998 99999999999976  35 7777766543222   235577776654432   2111               


Q ss_pred             ----HHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccC
Q 025336          131 ----ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG  165 (254)
Q Consensus       131 ----~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~  165 (254)
                          +.+.++.....+|+++.++.+...+.-.+..++.+
T Consensus        79 ~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~g  117 (151)
T d1q0qa2          79 LSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAG  117 (151)
T ss_dssp             EESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTT
T ss_pred             ccChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcC
Confidence                12222233346788888777766777777777765

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.26  E-value=0.007  Score=45.28  Aligned_cols=96  Identities=18%  Similarity=0.129  Sum_probs=63.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHHHHhhC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+++|++||-.|+|. |..++.+|+.-.+ +|++++.+++..+.+++    .|.+   .++..+.   .       ++..
T Consensus       104 ~~~~g~~VlD~~aG~-G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---~-------~~~~  171 (260)
T d2frna1         104 VAKPDELVVDMFAGI-GHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---R-------DFPG  171 (260)
T ss_dssp             HCCTTCEEEETTCTT-TTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---T-------TCCC
T ss_pred             hcCCccEEEECcceE-cHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---H-------Hhcc
Confidence            367899999887653 5566677776445 99999999998888764    3432   2333221   1       2223


Q ss_pred             CCCccEEE-EcC-CChhHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCF-ECT-GVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~-d~~-g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...+|.|+ +-. .+...++.+++.++++ |.+.....
T Consensus       172 ~~~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~~  208 (260)
T d2frna1         172 ENIADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHNT  208 (260)
T ss_dssp             CSCEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEec
Confidence            34688665 432 3344688899999998 98766543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.23  E-value=0.013  Score=42.37  Aligned_cols=93  Identities=20%  Similarity=0.245  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++++++||-+|+|. |..+..+++ .|. +|+++|.+++..+.+++    .+.. ..+....   .++     .. ....
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l-----~~-~~~~  102 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKL-----SF-EDKT  102 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSC-----CS-CTTC
T ss_pred             cCCCCEEEEECCCc-chhhhhHhh-hhc-ccccccccccchhhhhhhhcccccccccccccc---ccc-----cc-cCcC
Confidence            56888999999875 777788876 477 99999999998888764    2321 1221111   111     01 2237


Q ss_pred             ccEEEEcCCC-----h---hHHHHHHHHcccCCcEEEEE
Q 025336          142 VDYCFECTGV-----P---SLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       142 ~d~v~d~~g~-----~---~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ||+|+-...-     .   ..+..+.+.|+|+ |++++.
T Consensus       103 fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~  140 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY  140 (226)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ceEEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence            9998853321     1   2477888899999 998764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.21  E-value=0.015  Score=39.71  Aligned_cols=92  Identities=25%  Similarity=0.328  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +-.|.+++|.|-|-+|.-.++-+|.+|+ +|++++.++-+.-.+.--|.. +.        +..+.+      ...|+++
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf~-v~--------~~~~a~------~~aDi~v   83 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-VV--------TLDEIV------DKGDFFI   83 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-EC--------CHHHHT------TTCSEEE
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCCc-cC--------chhHcc------ccCcEEE
Confidence            4589999999999999999999999999 999999998655444333432 22        111111      2679999


Q ss_pred             EcCCChhH-HHHHHHHcccCCcEEEEEccC
Q 025336          147 ECTGVPSL-LSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       147 d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      -++|.... -..-++.++++ ..+.-.|-.
T Consensus        84 TaTGn~~vI~~~h~~~MKdg-aIl~N~GHf  112 (163)
T d1v8ba1          84 TCTGNVDVIKLEHLLKMKNN-AVVGNIGHF  112 (163)
T ss_dssp             ECCSSSSSBCHHHHTTCCTT-CEEEECSST
T ss_pred             EcCCCCccccHHHHHHhhCC-eEEEecccc
Confidence            99998653 45667888887 666665544

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.18  E-value=0.034  Score=38.79  Aligned_cols=97  Identities=21%  Similarity=0.236  Sum_probs=57.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcC-Ccc-cHHHHHhcCCceEeCCCC--------CC-CchHHHHHHHhhCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQG-AAKIIGIDK-NPW-KKEKGEAFGMTDFINPDD--------EP-NKSISELVKGITHG  139 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~-~~~-~~~~~~~~g~~~v~~~~~--------~~-~~~~~~~i~~~~~~  139 (254)
                      +|.|.|-|-+|+..++.+.... . +++++.. ++. ....+...+.........        .. ..++.+..      
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~------   75 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI------   75 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH------
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh------
Confidence            5889999999999999988654 5 7777633 222 333333333322211110        00 01111111      


Q ss_pred             CCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          140 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       140 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .++|+|+||+|.-...+.+-.++..+ -+++..+...
T Consensus        76 ~~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~~~  111 (178)
T d1b7go1          76 KTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGEK  111 (178)
T ss_dssp             HHCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTSC
T ss_pred             hcCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECCCC
Confidence            17899999999865667777778766 6777765544

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.17  E-value=0.047  Score=36.17  Aligned_cols=75  Identities=20%  Similarity=0.116  Sum_probs=43.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGL-GTVGLGAVDGAR-MQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~-~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|.|.|+ |-+|+..++... ..++ ++.+.....+.....                          .. .++|+++|.+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~~~~~~~~--------------------------~~-~~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDAGDPLSLL--------------------------TD-GNTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECTTCCTHHH--------------------------HT-TTCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCchhhh--------------------------cc-ccCCEEEEcc
Confidence            5889996 999999888766 4556 655542211111111                          11 2677777777


Q ss_pred             CChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          150 GVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       150 g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      -.. .....++.+... |.=+++|.++
T Consensus        53 ~p~-~~~~~~~~~~~~-~~~~ViGTTG   77 (135)
T d1yl7a1          53 HPD-VVMGNLEFLIDN-GIHAVVGTTG   77 (135)
T ss_dssp             CTT-THHHHHHHHHHT-TCEEEECCCC
T ss_pred             cHH-HHHHHHHHHHhc-CCCEEEeccc
Confidence            655 344444444444 5555666654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.005  Score=43.33  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      .....+|+|+|+|+.|+.++..+...|. +|+..++.++
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~   77 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSE   77 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCc
Confidence            3456899999999999999999999999 9999987653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.13  E-value=0.018  Score=40.95  Aligned_cols=89  Identities=20%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|+..+++++.+|+ +|++.++.......  ..+.    ..     .++.+.+.      ..|+++-+
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~--~~~~----~~-----~~l~~~l~------~sDii~~~  103 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELE--KKGY----YV-----DSLDDLYK------QADVISLH  103 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHH--HTTC----BC-----SCHHHHHH------HCSEEEEC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccccccc--ccee----ee-----cccccccc------cccccccc
Confidence            47899999999999999999999999 99999776543322  1121    11     22333332      56888877


Q ss_pred             CCChh-H----HHHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPS-L----LSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~-~----~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +.... +    -...++.++++ ..+|-.+...
T Consensus       104 ~plt~~T~~li~~~~l~~mk~~-a~lIN~sRG~  135 (197)
T d1j4aa1         104 VPDVPANVHMINDESIAKMKQD-VVIVNVSRGP  135 (197)
T ss_dssp             SCCCGGGTTCBSHHHHHHSCTT-EEEEECSCGG
T ss_pred             CCccccccccccHHHHhhhCCc-cEEEecCchh
Confidence            65321 1    24667888887 7777776653

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.12  E-value=0.035  Score=38.48  Aligned_cols=100  Identities=22%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC-C-cccHHHHHhcCCceEeCCCCCCCchHHH---------HHHHhhCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDK-N-PWKKEKGEAFGMTDFINPDDEPNKSISE---------LVKGITHGM  140 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~-~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~---------~i~~~~~~~  140 (254)
                      +|.|.|-|-+|+.+++.+...+--+++++-. + ......+..++.+......+   .....         .+.++.  .
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~v~g~~~~~~--~   77 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPE---RVKLFEKAGIEVAGTVDDML--D   77 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGG---GHHHHHHTTCCCCEEHHHHH--H
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccc---cceeecccCcccCCChhHhh--c
Confidence            6889999999999999887555226666532 2 23344555566544332221   11000         001111  2


Q ss_pred             CccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       141 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ++|+|+||+|.-...+.+-..+..+ -+.+..+.+..
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~~~  113 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKG-IKAIFQGGEKH  113 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTSCH
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcC-CCEEEECCCCc
Confidence            7999999999865667777788877 78777766543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0059  Score=40.02  Aligned_cols=62  Identities=16%  Similarity=0.283  Sum_probs=43.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      ++++|+|+|.+|+=+++++..+|. +|..+.+.++            ++..-+   ++..+.+.+.....|+++.+++
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~~------------~l~~~d---~ei~~~l~~~l~~~GV~i~~~~   85 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQ------------IGASMD---GEVAKATQKFLKKQGLDFKLST   85 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS------------SSSSSC---HHHHHHHHHHHHHTTCEEECSE
T ss_pred             CeEEEECCCchHHHHHHHHHhhCc-ceeEEEeccc------------cchhhh---hhhHHHHHHHHHhccceEEeCC
Confidence            689999999999999999999999 9999966542            122222   4555555544333467777654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.07  E-value=0.0056  Score=45.29  Aligned_cols=89  Identities=16%  Similarity=0.124  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      ++.+||=+|+|. |..+..+++ .|. +|+++|.+++-++.+++    .+.. .++.. +         +..+.....||
T Consensus        37 ~~~~vLDiGCG~-G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~-d---------~~~~~~~~~fD  103 (246)
T d1y8ca_          37 VFDDYLDLACGT-GNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQ-D---------ISNLNINRKFD  103 (246)
T ss_dssp             CTTEEEEETCTT-STTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECC-C---------GGGCCCSCCEE
T ss_pred             CCCeEEEEeCcC-CHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeecc-c---------hhhhccccccc
Confidence            457899999874 777777765 477 89999999998887764    3322 22321 1         12222234899


Q ss_pred             EEEEcCCC------h----hHHHHHHHHcccCCcEEEE
Q 025336          144 YCFECTGV------P----SLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       144 ~v~d~~g~------~----~~~~~~~~~l~~~~G~~v~  171 (254)
                      +|+...+.      .    ..+..+.+.|+|+ |.++.
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~  140 (246)
T d1y8ca_         104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF  140 (246)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred             ccceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence            99853221      1    1466777889999 98774

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.06  E-value=0.015  Score=44.70  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC--ccc---HHHHHhcCCceEe--CCCCCCCchHHHHHHHhhCCCCc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN--PWK---KEKGEAFGMTDFI--NPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~--~~~---~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      .+|||+|+ |-+|..+++.+...|. +|+++++-  ..+   .+.+...+.-.++  |-.+  ..++.+.+..    .++
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~--~~~l~~~~~~----~~~   73 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN--KNDVTRLITK----YMP   73 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHH----HCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCC--HHHHHHHHHh----cCC
Confidence            36999987 9999999999988899 99998642  222   2233333322222  3332  1223333322    278


Q ss_pred             cEEEEcCCC
Q 025336          143 DYCFECTGV  151 (254)
Q Consensus       143 d~v~d~~g~  151 (254)
                      |+||.+.+.
T Consensus        74 d~Vih~aa~   82 (338)
T d1orra_          74 DSCFHLAGQ   82 (338)
T ss_dssp             SEEEECCCC
T ss_pred             ceEEeeccc
Confidence            999998863

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.06  E-value=0.01  Score=38.42  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=43.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      ++++|+|+|.+|.=+++.+..+|. +|..+.+.++=            +..-+   ++..+.+.+.....|+++.+++.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~i------------l~~~d---~~~~~~l~~~l~~~GI~i~~~~~   85 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGEI------------LSGFE---KQMAAIIKKRLKKKGVEVVTNAL   85 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS------------STTSC---HHHHHHHHHHHHHTTCEEEESEE
T ss_pred             CeEEEECCCccceeeeeeeccccc-EEEEEEeccee------------ccccc---chhHHHHHHHHHhcCCEEEcCCE
Confidence            689999999999999999999999 99999766431            11112   44555555443334777777543

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.026  Score=42.64  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=44.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEE---cCCcccHHHH----Hhc---CCc-e--EeCCCCCCCchHHHHHHHhh
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGI---DKNPWKKEKG----EAF---GMT-D--FINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v---~~~~~~~~~~----~~~---g~~-~--v~~~~~~~~~~~~~~i~~~~  137 (254)
                      .|||+|+ +++|.+.++.+...|+ +|+.+   .++.++.+.+    +++   +.. .  ..|..+  .++....+.+..
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga-~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~   80 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD--SKSVAAARERVT   80 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC--HHHHHHHHHTCT
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCC-CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc--hHhhhhhhhhcc
Confidence            3567786 8999999998888998 54433   3443333322    232   222 1  234443  233444444444


Q ss_pred             CCCCccEEEEcCCC
Q 025336          138 HGMGVDYCFECTGV  151 (254)
Q Consensus       138 ~~~~~d~v~d~~g~  151 (254)
                      . ..+|+++++.|.
T Consensus        81 ~-g~idilvnnag~   93 (285)
T d1jtva_          81 E-GRVDVLVCNAGL   93 (285)
T ss_dssp             T-SCCSEEEECCCC
T ss_pred             c-cchhhhhhcccc
Confidence            4 489999998875

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0056  Score=39.71  Aligned_cols=33  Identities=27%  Similarity=0.224  Sum_probs=30.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ++|+|+|+|.+|+=+++.++.+|. +|..+.+.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            689999999999999999999999 999997764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.03  E-value=0.0038  Score=47.13  Aligned_cols=95  Identities=15%  Similarity=0.046  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC-----C-----ceEeCCCCCCCchHHHHHHHhhC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG-----M-----TDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g-----~-----~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ..++|||+|+|. |..+-.++++.+..+|.+++.+++-.+.++++-     +     ..++.      .|....+++  .
T Consensus        75 ~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~------~D~~~~l~~--~  145 (274)
T d1iy9a_          75 NPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV------DDGFMHIAK--S  145 (274)
T ss_dssp             SCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE------SCSHHHHHT--C
T ss_pred             CcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEe------chHHHHHhh--c
Confidence            457899998764 666777888887779999999999888887742     1     11221      334455554  2


Q ss_pred             CCCccEEE-EcCC---------ChhHHHHHHHHcccCCcEEEEEc
Q 025336          139 GMGVDYCF-ECTG---------VPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       139 ~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ...+|+|+ |...         ....++.+.+.|+++ |.++.-.
T Consensus       146 ~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~  189 (274)
T d1iy9a_         146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (274)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEec
Confidence            34899998 5432         123578889999999 9988754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.004  Score=37.14  Aligned_cols=36  Identities=19%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccH
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKK  107 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~  107 (254)
                      ++|.|+|+|-+|++.++-++.+|. ++++.+.+++.-
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCCc
Confidence            368999999999999999999999 999998775543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0074  Score=42.94  Aligned_cols=40  Identities=25%  Similarity=0.348  Sum_probs=35.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      ++|.|+|+|.+|...++++...|+ +|+..+.+++..+.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHH
Confidence            579999999999999999999999 9999999998766553

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.91  E-value=0.0072  Score=47.04  Aligned_cols=47  Identities=28%  Similarity=0.285  Sum_probs=39.2

Q ss_pred             hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           64 EAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      ...+++|++|||+|+ |-+|..+++.+...|+ +|+++.++.++.+.++
T Consensus         5 ~~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             TCSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            345678999999987 9999999998888899 9999888877666554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.90  E-value=0.01  Score=42.31  Aligned_cols=94  Identities=24%  Similarity=0.348  Sum_probs=59.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceE-eCCCCCCCchHHHHHHHhhCCCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDF-INPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      +++| +||-+|+| .|..+..+++ .|+ +|++++.+++..+.+++    .+.+.+ +...+         +.+......
T Consensus        29 ~~~g-rvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d---------~~~~~~~~~   95 (198)
T d2i6ga1          29 VAPG-RTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVD---------LNTLTFDGE   95 (198)
T ss_dssp             SCSC-EEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECC---------TTTCCCCCC
T ss_pred             CCCC-cEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhhee---------ccccccccc
Confidence            3444 89999987 5777777765 588 99999999988887654    343321 11111         011112237


Q ss_pred             ccEEEEcCC-----C---hhHHHHHHHHcccCCcEEEEEcc
Q 025336          142 VDYCFECTG-----V---PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       142 ~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ||+|+...-     .   ...+..+.+.++++ |.++....
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  135 (198)
T d2i6ga1          96 YDFILSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVAA  135 (198)
T ss_dssp             EEEEEEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             ccEEEEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            999986331     1   13567788889999 99887644

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.87  E-value=0.017  Score=37.51  Aligned_cols=41  Identities=20%  Similarity=0.206  Sum_probs=35.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +.....++++|+|.|+|.+|+=++..++.+|. +|..+.+.+
T Consensus        15 ~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          15 EELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            45566778999999999999999999999999 899987664

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0096  Score=44.10  Aligned_cols=36  Identities=28%  Similarity=0.400  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +..+|+|+|+|++|..++..+-..|.++++.+|.+.
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            357899999999999999999999999999998765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.86  E-value=0.0095  Score=38.97  Aligned_cols=62  Identities=11%  Similarity=0.083  Sum_probs=42.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      ++++|+|+|.+|+=+++.++.+|. +|..+.+++    .++         .-+   ++..+.+.+.....|+++..++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~----~l~---------~~D---~~~~~~l~~~l~~~Gv~i~~~~~   82 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI----LLR---------GFD---QDMANKIGEHMEEHGIKFIRQFV   82 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS----SST---------TSC---HHHHHHHHHHHHHTTEEEEESCE
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech----hhc---------cCC---HHHHHHHHHHHHHCCCEEEECCE
Confidence            579999999999999999999999 888886541    111         122   45555555544444777776543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.86  E-value=0.012  Score=38.18  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .++++|+|+|.+|+=+++.++.+|. +|..+.+.+
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            3789999999999999999999999 898886653

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=95.84  E-value=0.014  Score=44.79  Aligned_cols=95  Identities=13%  Similarity=0.085  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC------C-----ceEeCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG------M-----TDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g------~-----~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ..++|||+|+|. |..+-++++.....+|.+++.+++-.+.++++-      +     -.++.      .|..+.+++  
T Consensus        77 ~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~------~Da~~~l~~--  147 (312)
T d1uira_          77 EPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI------DDARAYLER--  147 (312)
T ss_dssp             CCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE------SCHHHHHHH--
T ss_pred             CcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE------chHHHHhhh--
Confidence            457899998764 666667777766559999999999888887632      1     11221      455566654  


Q ss_pred             CCCCccEEE-EcC---CC---------hhHHHHHHHHcccCCcEEEEEc
Q 025336          138 HGMGVDYCF-ECT---GV---------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       138 ~~~~~d~v~-d~~---g~---------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .+..||+|| |..   +.         ...++.+.+.|+++ |.++.-.
T Consensus       148 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~~  195 (312)
T d1uira_         148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQT  195 (312)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEec
Confidence            234899998 542   21         12467888999999 9887643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.82  E-value=0.022  Score=44.20  Aligned_cols=76  Identities=18%  Similarity=0.058  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-Hhc----CCceE-eCCCCCCCchHHHHHHHhhCCCC
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-EAF----GMTDF-INPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-~~~----g~~~v-~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++.+|||+|+ |-+|..+++.+...|. +|+++++++.+...+ +..    +...+ .|-.+   .+....+.+   ...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d---~~~l~~~~~---~~~   79 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD---QNKLLESIR---EFQ   79 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC---HHHHHHHHH---HHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeeccC---hHhhhhhhh---hch
Confidence            5789999986 9999999999999999 999999877544322 211    12222 23333   333332222   227


Q ss_pred             ccEEEEcCCC
Q 025336          142 VDYCFECTGV  151 (254)
Q Consensus       142 ~d~v~d~~g~  151 (254)
                      +|+++.+++.
T Consensus        80 ~~~v~~~aa~   89 (356)
T d1rkxa_          80 PEIVFHMAAQ   89 (356)
T ss_dssp             CSEEEECCSC
T ss_pred             hhhhhhhhcc
Confidence            8899988864

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.82  E-value=0.0075  Score=44.72  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ..++|+|+|+|+.|++++..++..|. +|++.++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            35789999999999999999999999 999998764

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.76  E-value=0.011  Score=43.59  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      -+|.+|+|.|.|.+|..+++++...|+ +|++++..
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeecc
Confidence            478999999999999999999999999 88887543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.76  E-value=0.018  Score=41.97  Aligned_cols=110  Identities=22%  Similarity=0.207  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      -.|.+|+|.|.|.+|..+++++...|+ ++++++.+..+.+.+.. .|.. .++..     +       +.. ..+|+.+
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~-~~~~~-----~-------~~~-~~cDIl~  101 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD-AVAPN-----A-------IYG-VTCDIFA  101 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE-ECCGG-----G-------TTT-CCCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc-ccCCc-----c-------ccc-ccccEec
Confidence            368899999999999999999999999 99999988887776543 5554 22221     1       112 2789988


Q ss_pred             EcCCChhHHHHHHHHcccCCcEEEEEccCCCceeec-cH-HHHHhCCCEEEee
Q 025336          147 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPL-NV-IALACGGRTLKGT  197 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~-~~~~~~~~~i~g~  197 (254)
                      =|.-+...-+.....++-   + ++++.... +++. .. ..+..+++.+.+.
T Consensus       102 PcA~~~~I~~~~~~~l~a---k-~Ive~ANn-~~t~~ea~~~L~~rGI~~iPD  149 (230)
T d1leha1         102 PCALGAVLNDFTIPQLKA---K-VIAGSADN-QLKDPRHGKYLHELGIVYAPD  149 (230)
T ss_dssp             ECSCSCCBSTTHHHHCCC---S-EECCSCSC-CBSSHHHHHHHHHHTCEECCH
T ss_pred             ccccccccChHHhhccCc---c-EEEecccC-CCCCchHHHHHHhhCcEEEee
Confidence            877654333344445533   3 33444322 1221 11 2255567766653

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.76  E-value=0.036  Score=39.16  Aligned_cols=92  Identities=14%  Similarity=0.184  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.++.|+|.|.+|+..+++++..|+ +|+..++...........+...   .     .++.+.+.      ..|+|..+
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~---~-----~~l~~ll~------~sD~v~l~  110 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQATF---H-----DSLDSLLS------VSQFFSLN  110 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCEE---C-----SSHHHHHH------HCSEEEEC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhcccccc---c-----CCHHHHHh------hCCeEEec
Confidence            47899999999999999999999999 9999987665444333322211   1     22333222      56787765


Q ss_pred             CCC-hhH----HHHHHHHcccCCcEEEEEccCC
Q 025336          149 TGV-PSL----LSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ... +.+    -...++.++++ ..+|-++...
T Consensus       111 ~plt~~T~~li~~~~l~~mk~~-a~lIN~sRG~  142 (191)
T d1gdha1         111 APSTPETRYFFNKATIKSLPQG-AIVVNTARGD  142 (191)
T ss_dssp             CCCCTTTTTCBSHHHHTTSCTT-EEEEECSCGG
T ss_pred             CCCCchHhheecHHHhhCcCCc-cEEEecCCcc
Confidence            542 211    23677788887 7777776653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.75  E-value=0.012  Score=44.46  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC-------------c---eEeCCCCCCCchHHH
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM-------------T---DFINPDDEPNKSISE  131 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~-------------~---~v~~~~~~~~~~~~~  131 (254)
                      .+.++|||+|+|. |..+-.++++ ...+|.+++.+++-.+.++++-.             +   .++.      .|...
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~------~Da~~  142 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI------GDGFE  142 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE------SCHHH
T ss_pred             CCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE------ChHHH
Confidence            4457899998653 4444555665 44589999999998888876321             0   1221      34455


Q ss_pred             HHHHhhCCCCccEEE-EcCCC---------hhHHHHHHHHcccCCcEEEEEc
Q 025336          132 LVKGITHGMGVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       132 ~i~~~~~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      .+++  . +.||+|+ |....         ...++.+.+.|+++ |.++.-.
T Consensus       143 ~l~~--~-~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~  190 (276)
T d1mjfa_         143 FIKN--N-RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA  190 (276)
T ss_dssp             HHHH--C-CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             HHhc--c-CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEec
Confidence            5543  3 4899998 55432         12477888999999 9887644

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.73  E-value=0.054  Score=36.56  Aligned_cols=40  Identities=18%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA  112 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~  112 (254)
                      +|-|+|.|.+|+..+.-++..|. +|++.++.+++....+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~   41 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERA   41 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHhh
Confidence            57889999999999999999999 88888777666555443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.71  E-value=0.038  Score=38.43  Aligned_cols=43  Identities=23%  Similarity=0.250  Sum_probs=37.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM  115 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~  115 (254)
                      +|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence            47789999999999888888999 99999999999988866543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0093  Score=39.18  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=30.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ++++|+|+|.+|+=+++.++.+|. +|..+.+++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            689999999999999999999999 999997764

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.046  Score=35.87  Aligned_cols=72  Identities=15%  Similarity=0.159  Sum_probs=45.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGI-DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|.|+|+ |-+|++..+++...+. +++.. +.+..                     ..          -..+|+++|.+
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~~---------------------~~----------~~~~DVvIDFS   49 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNGV---------------------EE----------LDSPDVVIDFS   49 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTEE---------------------EE----------CSCCSEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCcH---------------------HH----------hccCCEEEEec
Confidence            5889996 9999999999999998 65543 21110                     00          01568888877


Q ss_pred             CChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          150 GVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       150 g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ... .+...++.+... +.=+++|..+-
T Consensus        50 ~p~-~~~~~l~~~~~~-~~p~ViGTTG~   75 (128)
T d1vm6a3          50 SPE-ALPKTVDLCKKY-RAGLVLGTTAL   75 (128)
T ss_dssp             CGG-GHHHHHHHHHHH-TCEEEECCCSC
T ss_pred             CHH-HHHHHHHHHHhc-CCCEEEEcCCC
Confidence            766 344444444444 55566666543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.69  E-value=0.031  Score=39.52  Aligned_cols=98  Identities=16%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc----eEeCCCCCCCchHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT----DFINPDDEPNKSISEL  132 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~----~v~~~~~~~~~~~~~~  132 (254)
                      |.....+.++++||-+|+|. |..++.+++ .+. +|++++.+++..+.+++    .+..    .++..+      ..+ 
T Consensus        44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d------~~~-  113 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD------LYE-  113 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECS------TTT-
T ss_pred             HHHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcc------hhh-
Confidence            44677788999999998764 566666665 455 89999999988888764    2321    122111      111 


Q ss_pred             HHHhhCCCCccEEEEcC---CCh----hHHHHHHHHcccCCcEEEEE
Q 025336          133 VKGITHGMGVDYCFECT---GVP----SLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~---g~~----~~~~~~~~~l~~~~G~~v~~  172 (254)
                        .. ....||+|+-..   .+.    ..++.+.+.|+++ |+++..
T Consensus       114 --~~-~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  156 (194)
T d1dusa_         114 --NV-KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV  156 (194)
T ss_dssp             --TC-TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             --hh-ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence              11 234899999522   122    2367778889999 987653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.68  E-value=0.041  Score=38.95  Aligned_cols=91  Identities=18%  Similarity=0.252  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++..... .....+...   .     .++.+.+.      ..|++.-+
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-~~~~~~~~~---~-----~~l~~ll~------~sD~i~~~  111 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQR---V-----STLQDLLF------HSDCVTLH  111 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEE---C-----SSHHHHHH------HCSEEEEC
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCccccc-chhhhcccc---c-----cchhhccc------cCCEEEEe
Confidence            57899999999999999999999999 999997764432 222333221   1     22333222      45777765


Q ss_pred             CCC-hhH----HHHHHHHcccCCcEEEEEccCC
Q 025336          149 TGV-PSL----LSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +.. +.+    -...+..++++ ..+|-.+...
T Consensus       112 ~plt~~T~~li~~~~l~~mk~~-a~lIN~sRG~  143 (193)
T d1mx3a1         112 CGLNEHNHHLINDFTVKQMRQG-AFLVNTARGG  143 (193)
T ss_dssp             CCCCTTCTTSBSHHHHTTSCTT-EEEEECSCTT
T ss_pred             ecccccchhhhhHHHHhccCCC-CeEEecCCce
Confidence            542 111    23566778887 7777777654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.64  E-value=0.0074  Score=45.66  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +++|+|+|+|+.|+.++..++..|. +|++++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            5789999999999999999999999 999998754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.013  Score=42.57  Aligned_cols=104  Identities=15%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHHh--
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKGI--  136 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~--  136 (254)
                      ..+....++||-+|.+ .|..++.+|+.+. -.+++.++.+++..+.+++    .|....+....   .+..+.+.++  
T Consensus        54 L~~~~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~---Gda~e~l~~~~~  129 (219)
T d2avda1          54 LARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDELLA  129 (219)
T ss_dssp             HHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHH
T ss_pred             HHHccCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE---eehhhcchhhhh
Confidence            3444556799999965 3777788888653 1389999999998887765    34322222222   3344444332  


Q ss_pred             -hCCCCccEEEEcCCC---hhHHHHHHHHcccCCcEEEEE
Q 025336          137 -THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       137 -~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  172 (254)
                       .....||+||--...   ...++.+++.++++ |.++.=
T Consensus       130 ~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~D  168 (219)
T d2avda1         130 AGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVL  168 (219)
T ss_dssp             TTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             hcccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEe
Confidence             223379999843332   23477899999998 877653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=95.60  E-value=0.019  Score=44.14  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHHHhh-CC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVKGIT-HG  139 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~~-~~  139 (254)
                      ..+|++||=.++|. |..++.+++  |.++|++++.+++..+.+++    .|.+.  ++.      .+..+.++.+. .+
T Consensus       143 ~~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~------~d~~~~~~~~~~~~  213 (318)
T d1wxxa2         143 RFRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLE------ANAFDLLRRLEKEG  213 (318)
T ss_dssp             GCCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE------SCHHHHHHHHHHTT
T ss_pred             HhCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceee------ccHHHHhhhhHhhh
Confidence            34789999886543 344455554  33489999999998888864    45432  222      33333333332 34


Q ss_pred             CCccEEE-E--cCCC------------hhHHHHHHHHcccCCcEEEEEccCC
Q 025336          140 MGVDYCF-E--CTGV------------PSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       140 ~~~d~v~-d--~~g~------------~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ..||+|+ |  +.+.            ...+..+++.++|+ |.++.+....
T Consensus       214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~scs~  264 (318)
T d1wxxa2         214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCSH  264 (318)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECCT
T ss_pred             cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCCc
Confidence            4899998 3  2211            12455778889999 9998887654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=95.58  E-value=0.0043  Score=45.31  Aligned_cols=96  Identities=20%  Similarity=0.179  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHH---cCCCeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARM---QGAAKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~---~g~~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ++++.+||-+|+|. |..+..+++.   .++ +|+++|.+++-.+.+++.    +....+....   .+.    ... ..
T Consensus        37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~---~d~----~~~-~~  106 (225)
T d1im8a_          37 VTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILC---NDI----RHV-EI  106 (225)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEEC---SCT----TTC-CC
T ss_pred             cCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhcc---chh----hcc-cc
Confidence            57889999999764 6777777774   467 999999999988888752    3211111111   111    111 12


Q ss_pred             CCccEEEEcCCC--------hhHHHHHHHHcccCCcEEEEEc
Q 025336          140 MGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       140 ~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ..+|+++-+..-        ...+..+.+.|+|+ |.++...
T Consensus       107 ~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~  147 (225)
T d1im8a_         107 KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSE  147 (225)
T ss_dssp             CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ccceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeeccc
Confidence            256766643221        13588899999999 9998764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.54  E-value=0.042  Score=40.79  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCcccHH-HH-HhcCCce---EeCCCCC-CCchHHHHHHHh-hC
Q 025336           69 KGSSVAVLGL-G--TVGLGAVDGARMQGAAKIIGIDKNPWKKE-KG-EAFGMTD---FINPDDE-PNKSISELVKGI-TH  138 (254)
Q Consensus        69 ~~~~vlI~G~-g--~~G~~~~~~a~~~g~~~v~~v~~~~~~~~-~~-~~~g~~~---v~~~~~~-~~~~~~~~i~~~-~~  138 (254)
                      +|+++||+|+ |  ++|.+.++-+...|+ +|+.+++++++.. .+ ++++...   ..|..+. +..+..+.+.+. ..
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~~   83 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   83 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcccc
Confidence            6889999984 4  599999999999999 8999988876653 23 3444321   2233320 012233333332 23


Q ss_pred             CCCccEEEEcCCC
Q 025336          139 GMGVDYCFECTGV  151 (254)
Q Consensus       139 ~~~~d~v~d~~g~  151 (254)
                      ...+|+++++.|.
T Consensus        84 ~~~ld~~i~~ag~   96 (268)
T d2h7ma1          84 GNKLDGVVHSIGF   96 (268)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             CCCcceeeecccc
Confidence            3478999998873

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.54  E-value=0.032  Score=41.35  Aligned_cols=35  Identities=11%  Similarity=0.118  Sum_probs=29.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK  107 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~  107 (254)
                      +.||+|+ +++|.+.++.+...|+ +|+.++++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHH
Confidence            4578886 8999999999999999 999999886543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.53  E-value=0.011  Score=38.58  Aligned_cols=64  Identities=14%  Similarity=0.164  Sum_probs=44.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      .++++|+|+|.+|+=++++...+|. +|.++.++++-+            ..-+   ++..+.+.+.....|+++..++.
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~~l------------~~~d---~~~~~~l~~~l~~~GI~i~~~~~   88 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASEIV------------PTMD---AEIRKQFQRSLEKQGMKFKLKTK   88 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSSSS------------TTSC---HHHHHHHHHHHHHSSCCEECSEE
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccccC------------chhh---hcchhhhhhhhhcccceEEcCCc
Confidence            4689999999999999999999999 999997764322            1122   44555554444334677776543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.53  E-value=0.014  Score=44.38  Aligned_cols=95  Identities=14%  Similarity=0.119  Sum_probs=63.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC----------ceEeCCCCCCCchHHHHHHHhhCC
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM----------TDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~----------~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      -++|||+|+|. |..+-.++++.+..+|.+++.+++-.+.++++..          -.++.      .|..+.+++.  .
T Consensus        90 pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~~--~  160 (295)
T d1inla_          90 PKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI------ANGAEYVRKF--K  160 (295)
T ss_dssp             CCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHGGGC--S
T ss_pred             CceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh------hhHHHHHhcC--C
Confidence            47899998754 5556677787776689999999998888876421          02221      4455555542  3


Q ss_pred             CCccEEE-EcCCC----------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          140 MGVDYCF-ECTGV----------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       140 ~~~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ..||+|+ |+...          ...+..+.+.|+++ |.++.-..
T Consensus       161 ~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~~  205 (295)
T d1inla_         161 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAETE  205 (295)
T ss_dssp             SCEEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             CCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEecC
Confidence            4899998 54321          22467888899999 98887543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.52  E-value=0.061  Score=33.25  Aligned_cols=72  Identities=15%  Similarity=0.277  Sum_probs=50.4

Q ss_pred             CCCCCEEEEEcCCHHHHHH-HHHHHHcCCCeEEEEcCCc-ccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           67 VEKGSSVAVLGLGTVGLGA-VDGARMQGAAKIIGIDKNP-WKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~-~~~a~~~g~~~v~~v~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+...+|.++|-|++|+.+ +++++..|+ +|.+.|... ...+.+++.|......+..   ..       +   .+.|+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~---~~-------i---~~~d~   70 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE---EH-------I---EGASV   70 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG---GG-------G---TTCSE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc---cc-------C---CCCCE
Confidence            3456789999988889776 799999999 999998864 3445667788764443332   11       1   26788


Q ss_pred             EEEcCCCh
Q 025336          145 CFECTGVP  152 (254)
Q Consensus       145 v~d~~g~~  152 (254)
                      ++-+.+-+
T Consensus        71 vV~S~AI~   78 (96)
T d1p3da1          71 VVVSSAIK   78 (96)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCcC
Confidence            88766543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.51  E-value=0.066  Score=32.57  Aligned_cols=67  Identities=15%  Similarity=0.274  Sum_probs=47.0

Q ss_pred             EEEEEcCCHHHHHH-HHHHHHcCCCeEEEEcCCc-ccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGLGTVGLGA-VDGARMQGAAKIIGIDKNP-WKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~g~~G~~~-~~~a~~~g~~~v~~v~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|-++|-|++|+.+ +++++..|+ .|.+.|..+ +..+.+++.|.......+.   +.+          .+.|+++-+.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~---~~i----------~~~d~vV~Ss   68 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSA---DNW----------YDPDLVIKTP   68 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCT---TSC----------CCCSEEEECT
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecc---ccc----------CCCCEEEEec
Confidence            56777988889864 688999999 999999876 4555688899764433322   221          2688888766


Q ss_pred             CCh
Q 025336          150 GVP  152 (254)
Q Consensus       150 g~~  152 (254)
                      .-+
T Consensus        69 AI~   71 (89)
T d1j6ua1          69 AVR   71 (89)
T ss_dssp             TCC
T ss_pred             CcC
Confidence            543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.023  Score=42.94  Aligned_cols=97  Identities=12%  Similarity=0.063  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC----------ceEeCCCCCCCchHHHHHHHhh
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM----------TDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~----------~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ..-++|||+|+|. |..+-.++++.+..+|++++-+++-.+.++++-.          ..++.      .|....+++ +
T Consensus        77 ~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~------~Da~~~l~~-~  148 (285)
T d2o07a1          77 PNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ-N  148 (285)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT-C
T ss_pred             cCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE------ccHHHHHhc-C
Confidence            3457899998754 5666677787777799999999998888876421          11221      345555654 2


Q ss_pred             CCCCccEEE-EcCCC---------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          138 HGMGVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       138 ~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                       ...||+|+ |....         ...++.+.+.|+++ |.++.-..
T Consensus       149 -~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~  193 (285)
T d2o07a1         149 -QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQGE  193 (285)
T ss_dssp             -SSCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEecc
Confidence             34899998 54321         12467788899999 98886543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.004  Score=47.96  Aligned_cols=97  Identities=21%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHH---HHhcCC-c--eEeCCCCCCCchHHHHHH
Q 025336           61 AWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEK---GEAFGM-T--DFINPDDEPNKSISELVK  134 (254)
Q Consensus        61 l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~---~~~~g~-~--~v~~~~~~~~~~~~~~i~  134 (254)
                      +.....+.++++||-+|+| .|.+++.+|+ .|+++|++++.++.-...   .++.+. +  .++..+.   .       
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~---~-------   94 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI---E-------   94 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT---T-------
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH---H-------
Confidence            3344456789999999976 4666665555 587799999988753222   223332 1  2232221   1       


Q ss_pred             Hhh-CCCCccEEEE-cCC----ChhHHHH----HHHHcccCCcEEE
Q 025336          135 GIT-HGMGVDYCFE-CTG----VPSLLSE----ALETTKVGKGKVI  170 (254)
Q Consensus       135 ~~~-~~~~~d~v~d-~~g----~~~~~~~----~~~~l~~~~G~~v  170 (254)
                      ++. ....+|+|+- ..+    .+..++.    .-+.|+|+ |+++
T Consensus        95 ~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~-G~ii  139 (311)
T d2fyta1          95 EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG-GSVY  139 (311)
T ss_dssp             TSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE-EEEE
T ss_pred             HhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCC-cEEe
Confidence            111 2348999984 222    2222333    33568998 9876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.47  E-value=0.024  Score=36.98  Aligned_cols=71  Identities=20%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      ...-.++.+|+|+|+|.+|+-+++.+..+|. +|..+++.+.-+      +     ..-+   ++..+.+.+.....+++
T Consensus        24 ~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~~~l------~-----~~~d---~~~~~~~~~~l~~~gv~   88 (123)
T d1nhpa2          24 KTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDRPL------G-----VYLD---KEFTDVLTEEMEANNIT   88 (123)
T ss_dssp             HHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTT------T-----TTCC---HHHHHHHHHHHHTTTEE
T ss_pred             HhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecCccc------c-----cccc---hhhHHHHHHHhhcCCeE
Confidence            3334467899999999999999999999999 899996664211      1     0111   44555555544444777


Q ss_pred             EEEEcC
Q 025336          144 YCFECT  149 (254)
Q Consensus       144 ~v~d~~  149 (254)
                      +.+++.
T Consensus        89 ~~~~~~   94 (123)
T d1nhpa2          89 IATGET   94 (123)
T ss_dssp             EEESCC
T ss_pred             EEeCce
Confidence            776543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=95.46  E-value=0.0062  Score=41.49  Aligned_cols=84  Identities=6%  Similarity=-0.092  Sum_probs=51.1

Q ss_pred             EEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCChh
Q 025336           74 AVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  153 (254)
Q Consensus        74 lI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  153 (254)
                      -++|+|.+|...++.++..+. .+.+..+++++.+.+.+.+.....+..+            .  -...|+||-|+... 
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~-~~~v~~R~~~~~~~l~~~~~~~~~~~~~------------~--~~~~DiVil~v~d~-   66 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYE-IGYILSRSIDRARNLAEVYGGKAATLEK------------H--PELNGVVFVIVPDR-   66 (153)
T ss_dssp             EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC------------C--CC---CEEECSCTT-
T ss_pred             EEEeCcHHHHHHHHHHHhCCC-EEEEEeCChhhhcchhhcccccccchhh------------h--hccCcEEEEeccch-
Confidence            467999999998887765443 3456789999888877665433322221            1  12678999999775 


Q ss_pred             HHHHHHHHcccCCcE-EEEEcc
Q 025336          154 LLSEALETTKVGKGK-VIVIGV  174 (254)
Q Consensus       154 ~~~~~~~~l~~~~G~-~v~~g~  174 (254)
                      .+...+..++.. ++ ++.++.
T Consensus        67 ~i~~v~~~l~~~-~~ivi~~s~   87 (153)
T d2i76a2          67 YIKTVANHLNLG-DAVLVHCSG   87 (153)
T ss_dssp             THHHHHTTTCCS-SCCEEECCS
T ss_pred             hhhHHHhhhccc-ceeeeeccc
Confidence            567777777654 44 444443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.42  E-value=0.011  Score=41.86  Aligned_cols=84  Identities=10%  Similarity=0.015  Sum_probs=55.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCC------ceEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGM------TDFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .+|.|+|+|..|.+.+.++-..|. +|...+++++..+.+...+.      +..+..+-....++.+.+      .+.|+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~------~~ad~   80 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY------NGAEI   80 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH------TTCSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhcc------CCCCE
Confidence            369999999999999998888888 89999999888887754321      111110000001223322      16799


Q ss_pred             EEEcCCChhHHHHHHHHc
Q 025336          145 CFECTGVPSLLSEALETT  162 (254)
Q Consensus       145 v~d~~g~~~~~~~~~~~l  162 (254)
                      ++-++... .+...++.+
T Consensus        81 iiiavPs~-~~~~~~~~~   97 (189)
T d1n1ea2          81 ILFVIPTQ-FLRGFFEKS   97 (189)
T ss_dssp             EEECSCHH-HHHHHHHHH
T ss_pred             EEEcCcHH-HHHHHHHHH
Confidence            99999876 566666544

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.39  E-value=0.017  Score=40.34  Aligned_cols=50  Identities=18%  Similarity=0.083  Sum_probs=36.2

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           60 AAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        60 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      +|.....--++.+|||+|+|+++.+++..+..  ..++.++.|+.++.+.+.
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~--~~~i~I~nR~~~ka~~l~   57 (177)
T d1nvta1           8 ALEEEIGRVKDKNIVIYGAGGAARAVAFELAK--DNNIIIANRTVEKAEALA   57 (177)
T ss_dssp             HHHHHHCCCCSCEEEEECCSHHHHHHHHHHTS--SSEEEEECSSHHHHHHHH
T ss_pred             HHHHhCCCcCCCEEEEECCcHHHHHHHHHHcc--ccceeeehhhhhHHHHHH
Confidence            34333333478899999999999988766543  348999999988877653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.021  Score=42.81  Aligned_cols=95  Identities=17%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCce-EeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTD-FINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ..++.+||=+|+|. |..+..+++.. +. +++++|.+++..+.+++..... .+..+.   .++     .+ ....||+
T Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~---~~l-----~~-~~~sfD~  150 (268)
T d1p91a_          82 DDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PF-SDTSMDA  150 (268)
T ss_dssp             CTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SB-CTTCEEE
T ss_pred             CCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeeh---hhc-----cC-CCCCEEE
Confidence            35677899888764 77777787765 45 8999999999888887644322 111111   111     11 1237999


Q ss_pred             EEEcCCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          145 CFECTGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       145 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      |+..-... .+..+.+.|+|+ |.++....
T Consensus       151 v~~~~~~~-~~~e~~rvLkpg-G~l~~~~p  178 (268)
T d1p91a_         151 IIRIYAPC-KAEELARVVKPG-GWVITATP  178 (268)
T ss_dssp             EEEESCCC-CHHHHHHHEEEE-EEEEEEEE
T ss_pred             EeecCCHH-HHHHHHHHhCCC-cEEEEEee
Confidence            99655443 678999999999 99887653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.37  E-value=0.02  Score=37.46  Aligned_cols=63  Identities=10%  Similarity=0.099  Sum_probs=44.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .++++|+|+|.+|+=+++..+.+|. +|..+.+.++            ++...+   ++..+.+.+.....++.+..++
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~~------------il~~~d---~~~~~~l~~~l~~~gv~~~~~~   88 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMDG------------LMQGAD---RDLVKVWQKQNEYRFDNIMVNT   88 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSSS------------SSTTSC---HHHHHHHHHHHGGGEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeecc------------ccccch---hhHHHHHHHHHHHcCcccccCc
Confidence            4789999999999999999999999 9999966532            222222   5556656554444456555544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.36  E-value=0.044  Score=38.57  Aligned_cols=92  Identities=13%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+.++.|+|.|.+|...++.++.+|. +|+..++........+..+....        .++.+.+      ...|+|.-+
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~--------~~l~~~l------~~sD~v~~~  107 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATREDMY------PVCDVVTLN  107 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHG------GGCSEEEEC
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccccccc--------CCHHHHH------Hhccchhhc
Confidence            57899999999999999999999999 99999887666555555443211        1122211      156777765


Q ss_pred             CCChh-----HHHHHHHHcccCCcEEEEEccCC
Q 025336          149 TGVPS-----LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~~~-----~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ....+     .-...+..++++ ..+|-++...
T Consensus       108 ~plt~~T~~li~~~~l~~mk~g-a~lIN~aRG~  139 (188)
T d2naca1         108 CPLHPETEHMINDETLKLFKRG-AYIVNTARGK  139 (188)
T ss_dssp             SCCCTTTTTCBSHHHHTTSCTT-EEEEECSCGG
T ss_pred             ccccccchhhhHHHHHHhCCCC-CEEEecCchh
Confidence            54211     123666777776 6666666543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.35  E-value=0.05  Score=41.49  Aligned_cols=102  Identities=13%  Similarity=0.023  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--eEeCCCCC--CCchHHHHHHHhhCCCCccE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--DFINPDDE--PNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~v~~~~~~--~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ..++|||+|+|. |..+-.++++....+|.+++.+++-.+.++++-..  ..++....  -..|..+.+++ + ...||+
T Consensus       106 ~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~-~~~yDv  182 (312)
T d2b2ca1         106 DPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-H-KNEFDV  182 (312)
T ss_dssp             SCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-C-TTCEEE
T ss_pred             CCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-C-CCCCCE
Confidence            446899998764 55666778877766999999999988888875321  01111100  01455666655 2 348999


Q ss_pred             EE-EcCCC---------hhHHHHHHHHcccCCcEEEEEcc
Q 025336          145 CF-ECTGV---------PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       145 v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      |+ |....         ...++.+.++|+++ |.++.-+.
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~  221 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQGE  221 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEE-EEEEEECC
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence            99 43321         12366778899999 99887653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.33  E-value=0.024  Score=42.28  Aligned_cols=31  Identities=16%  Similarity=0.305  Sum_probs=28.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      +|||+|+ |-+|..++..++..|. +|++++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeech
Confidence            5899987 9999999999999999 99998765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.32  E-value=0.017  Score=42.22  Aligned_cols=37  Identities=22%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      +...+|+|+|+|+.|+.++..++..|. +|++++.+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence            467899999999999999999999999 9999987654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.31  E-value=0.059  Score=37.73  Aligned_cols=91  Identities=24%  Similarity=0.272  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+.++.|+|.|.+|+..+++++..|+ +|++.++...+... ...+...         .++.+.+.      ..|+|.-+
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~~---------~~l~ell~------~sDiv~~~  105 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIEL---------LSLDDLLA------RADFISVH  105 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCEE---------CCHHHHHH------HCSEEEEC
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCcee---------ccHHHHHh------hCCEEEEc
Confidence            57899999999999999999999999 99999876544332 2333221         12222222      56888876


Q ss_pred             CCC-hhH----HHHHHHHcccCCcEEEEEccCCC
Q 025336          149 TGV-PSL----LSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       149 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +.. +.+    -...+..++++ ..+|-++...-
T Consensus       106 ~Plt~~T~~lin~~~l~~mk~~-a~lIN~sRG~i  138 (184)
T d1ygya1         106 LPKTPETAGLIDKEALAKTKPG-VIIVNAARGGL  138 (184)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-EEEEECSCTTS
T ss_pred             CCCCchhhhhhhHHHHhhhCCC-ceEEEecchhh
Confidence            653 211    23677778887 78777776543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=95.28  E-value=0.11  Score=35.70  Aligned_cols=95  Identities=16%  Similarity=0.220  Sum_probs=56.0

Q ss_pred             CCCCCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC-ceEeCCCCCCCchHHHHHHHhhC
Q 025336           66 EVEKGSSVAVLGL--GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM-TDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        66 ~~~~~~~vlI~G~--g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.+|.+||=.++  |.+|   +. |...|+ +|+.++.+++..+.+++    ++. +.+.....   ..+.... .. .
T Consensus        38 ~~~~g~~vLDl~~G~G~~~---i~-a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~---d~~~~~~-~~-~  107 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVG---LE-AASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV---EVFLPEA-KA-Q  107 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHH---HH-HHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH---HHHHHHH-HH-T
T ss_pred             cccCCCeEEEeccccchhh---hh-hhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh---hcccccc-cc-c
Confidence            4678889998854  5554   33 334688 89999999988887754    453 34544332   2222222 22 3


Q ss_pred             CCCccEEE-E---cCCChhHHHHHHH--HcccCCcEEEE
Q 025336          139 GMGVDYCF-E---CTGVPSLLSEALE--TTKVGKGKVIV  171 (254)
Q Consensus       139 ~~~~d~v~-d---~~g~~~~~~~~~~--~l~~~~G~~v~  171 (254)
                      +..||+|| |   ..+....+..++.  .++++ |.++.
T Consensus       108 ~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi  145 (171)
T d1ws6a1         108 GERFTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL  145 (171)
T ss_dssp             TCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred             CCccceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence            34899998 3   1233334444443  47777 76654

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=95.17  E-value=0.24  Score=37.08  Aligned_cols=56  Identities=16%  Similarity=0.242  Sum_probs=40.9

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---CcccHHHHHhcCCceEe
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK---NPWKKEKGEAFGMTDFI  119 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~---~~~~~~~~~~~g~~~v~  119 (254)
                      ....+.++..|....+|+.|++++..++.+|. +++++..   ++.+.+.++.+|+..++
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~k~~~~~~~GA~v~~  111 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGY-RMKLLMPDNMSQERRAAMRAYGAELIL  111 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEEEESCCCHHHHHHHHHTTCEEEE
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCc-ceEeeeccCchhhhhHHHHHhCCCcce
Confidence            45556667666555779999999999999999 5544433   45677888889987543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.13  E-value=0.026  Score=36.71  Aligned_cols=68  Identities=22%  Similarity=0.376  Sum_probs=47.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      .++++++++|+|+|.+|.=++..++..|. +|..+++++.=+      .     ..-+   +...+.+.+.....|+++.
T Consensus        26 ~~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~~l------~-----~~~~---~~~~~~~~~~l~~~GV~i~   90 (121)
T d1d7ya2          26 GLRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPRLM------S-----RAAP---ATLADFVARYHAAQGVDLR   90 (121)
T ss_dssp             HCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTT------T-----TTSC---HHHHHHHHHHHHTTTCEEE
T ss_pred             hhhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccccc------c-----ccCC---HHHHHHHHHHHHHCCcEEE
Confidence            35677899999999999999999999999 999997765311      0     0112   4555555555444577777


Q ss_pred             EEc
Q 025336          146 FEC  148 (254)
Q Consensus       146 ~d~  148 (254)
                      .++
T Consensus        91 ~~~   93 (121)
T d1d7ya2          91 FER   93 (121)
T ss_dssp             ESC
T ss_pred             eCC
Confidence            654

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.28  Score=37.93  Aligned_cols=56  Identities=18%  Similarity=0.238  Sum_probs=41.7

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---CcccHHHHHhcCCceEe
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK---NPWKKEKGEAFGMTDFI  119 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~---~~~~~~~~~~~g~~~v~  119 (254)
                      ....++++..|+...+|+.|.+++..|+.+|. +.+++..   ++++.+.++.+|++.+.
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi-~~~iv~p~~~~~~k~~~i~~~GA~vv~  148 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGY-RCIIVMPEKMSSEKVDVLRALGAEIVR  148 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccC-CeEEEeeccchHHHHHHHHhcCCeEEE
Confidence            44556677766665779999999999999999 5555433   44688888999987544

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.035  Score=43.27  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=27.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ..+||+|+ |-+|..++..+...|. +|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            56889986 9999999999999999 999998843

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.08  E-value=0.0035  Score=48.49  Aligned_cols=92  Identities=22%  Similarity=0.238  Sum_probs=53.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC-c--eEeCCCCCCCchHHHHHHHhhC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM-T--DFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~-~--~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      .+.+|++||-+|+|. |.+++.+++ .|+++|++++.++. ...++    ..+. +  .++..+.   .++     + ..
T Consensus        30 ~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~---~~~-----~-~~   97 (316)
T d1oria_          30 HLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKV---EEV-----E-LP   97 (316)
T ss_dssp             HHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCT---TTC-----C-CS
T ss_pred             ccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccH---HHc-----c-cc
Confidence            456899999999874 666665555 68778999998763 33332    2332 2  1222221   111     0 12


Q ss_pred             CCCccEEEE-cCCC----h----hHHHHHHHHcccCCcEEE
Q 025336          139 GMGVDYCFE-CTGV----P----SLLSEALETTKVGKGKVI  170 (254)
Q Consensus       139 ~~~~d~v~d-~~g~----~----~~~~~~~~~l~~~~G~~v  170 (254)
                      ...+|+++. ..+.    +    ..+...-+.|+|+ |+++
T Consensus        98 ~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii  137 (316)
T d1oria_          98 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF  137 (316)
T ss_dssp             SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             cceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence            347999974 2221    1    2334455789999 9876

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=95.07  E-value=0.012  Score=42.86  Aligned_cols=94  Identities=12%  Similarity=0.037  Sum_probs=58.4

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCce--EeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTD--FINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      .+..++.+||=+|+|. |..+..++ ..|. +|++++.+++..+.+++...+.  ++...-   .       .......|
T Consensus        16 ~~~~~~~~VLDiGcG~-G~~~~~l~-~~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~---~-------~~~~~~~f   82 (225)
T d2p7ia1          16 TPFFRPGNLLELGSFK-GDFTSRLQ-EHFN-DITCVEASEEAISHAQGRLKDGITYIHSRF---E-------DAQLPRRY   82 (225)
T ss_dssp             GGGCCSSCEEEESCTT-SHHHHHHT-TTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCG---G-------GCCCSSCE
T ss_pred             hhhCCCCcEEEEeCCC-cHHHHHHH-HcCC-eEEEEeCcHHHhhhhhcccccccccccccc---c-------cccccccc
Confidence            3444677899998764 66666555 4577 8999999999999987643322  222111   1       11223479


Q ss_pred             cEEEEcC-----CCh-hHHHHHH-HHcccCCcEEEEE
Q 025336          143 DYCFECT-----GVP-SLLSEAL-ETTKVGKGKVIVI  172 (254)
Q Consensus       143 d~v~d~~-----g~~-~~~~~~~-~~l~~~~G~~v~~  172 (254)
                      |+|+-.-     ..+ ..+..+. ++++++ |.++..
T Consensus        83 D~I~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~  118 (225)
T d2p7ia1          83 DNIVLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV  118 (225)
T ss_dssp             EEEEEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred             ccccccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence            9998432     122 2345555 578998 887764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.019  Score=41.86  Aligned_cols=75  Identities=20%  Similarity=0.264  Sum_probs=46.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcCCceE-eCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      ++.+|||+|+ |-+|...++.+...|. .+|+++++++.+...-..-..... .|..+     . +.+.+..  .++|++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~-----~-~~~~~~~--~~~d~v   84 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK-----L-DDYASAF--QGHDVG   84 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG-----G-GGGGGGG--SSCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccc-----c-ccccccc--cccccc
Confidence            3468999997 9999999988887774 479999887644332111112222 22222     1 1122221  379999


Q ss_pred             EEcCCC
Q 025336          146 FECTGV  151 (254)
Q Consensus       146 ~d~~g~  151 (254)
                      +.|+|.
T Consensus        85 i~~~~~   90 (232)
T d2bkaa1          85 FCCLGT   90 (232)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            999885

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.03  E-value=0.018  Score=40.51  Aligned_cols=39  Identities=28%  Similarity=0.314  Sum_probs=34.0

Q ss_pred             EEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           72 SVAVL-GLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        72 ~vlI~-G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      +|.|+ |+|++|.+.++.+...|+ +|++.++++++.+.+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~   41 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKA   41 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            57888 569999999999999999 9999999998877653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0044  Score=47.68  Aligned_cols=31  Identities=26%  Similarity=0.391  Sum_probs=27.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      .+|||+|+ |-+|..++..+...|. +|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            57999987 9999999998888999 9999875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.059  Score=41.42  Aligned_cols=73  Identities=14%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEe--CCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFI--NPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +|||+|+ |-+|..+++.+...|.-+|++++....+...+....--..+  |..+  ..++.+.+.+     ++|+|+.+
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~--~~~~~~~~~~-----~~d~Vih~   74 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI--HSEWIEYHVK-----KCDVVLPL   74 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTT--CSHHHHHHHH-----HCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCC--hHHHHHHHHh-----CCCccccc
Confidence            5999987 99999999888777843899998766555444332211122  2222  1333333322     78999998


Q ss_pred             CCC
Q 025336          149 TGV  151 (254)
Q Consensus       149 ~g~  151 (254)
                      ++.
T Consensus        75 a~~   77 (342)
T d2blla1          75 VAI   77 (342)
T ss_dssp             BCC
T ss_pred             ccc
Confidence            874

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=95.00  E-value=0.13  Score=39.32  Aligned_cols=101  Identities=17%  Similarity=0.148  Sum_probs=63.9

Q ss_pred             cCCCCCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC--c--eEeCCCCCCCchHHHHHH
Q 025336           65 AEVEKGSSVAVLGL--GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM--T--DFINPDDEPNKSISELVK  134 (254)
Q Consensus        65 ~~~~~~~~vlI~G~--g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~--~--~v~~~~~~~~~~~~~~i~  134 (254)
                      ..+.+|++||=..+  |+.++.    |...|++.|+.++.++...+.+++    .|.  +  .++.      .+..+.++
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~----aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~------~d~~~~l~  209 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVA----AAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV------MDVFDYFK  209 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHH----HHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE------SCHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHHH----HHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE------ccHHHHHH
Confidence            45678999998843  555432    234688789999999998888764    232  1  1232      33444444


Q ss_pred             Hhh-CCCCccEEEEc---CCC------------hhHHHHHHHHcccCCcEEEEEccCC
Q 025336          135 GIT-HGMGVDYCFEC---TGV------------PSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       135 ~~~-~~~~~d~v~d~---~g~------------~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ... .+..||+|+--   .+.            ...+..++++++|+ |.++.+....
T Consensus       210 ~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~scs~  266 (317)
T d2b78a2         210 YARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTNAA  266 (317)
T ss_dssp             HHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEECCT
T ss_pred             HHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCCc
Confidence            332 34589999832   111            12566788899999 9998877654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=94.99  E-value=0.035  Score=41.79  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhc----CCceEeCCCCCCCchHHHHHHHhhCC
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAF----GMTDFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      .++.+..+||=+|+|. |..+..+++..+. .+|+++|.+++..+.+++.    +.+.-+...+     .    .++.-.
T Consensus        23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d-----~----~~~~~~   92 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD-----A----TEIELN   92 (281)
T ss_dssp             SCCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESC-----T----TTCCCS
T ss_pred             hccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccc-----c----cccccc
Confidence            3567788999999874 8888888886542 2899999999888887652    3322121111     1    111112


Q ss_pred             CCccEEEEcCC-----C-hhHHHHHHHHcccCCcEEEEEc
Q 025336          140 MGVDYCFECTG-----V-PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       140 ~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ..||+|+....     . ...++.+.+.++|+ |++++..
T Consensus        93 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~  131 (281)
T d2gh1a1          93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE  131 (281)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             CCceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence            37999986432     2 23578899999999 9988764

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.1  Score=39.26  Aligned_cols=102  Identities=15%  Similarity=0.209  Sum_probs=61.4

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCceEe-CCCCCCCchHHHHHHHhhC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTDFI-NPDDEPNKSISELVKGITH  138 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~v~-~~~~~~~~~~~~~i~~~~~  138 (254)
                      ...+++|++||=.-|++=|.. ++++....-.+|++.+.++.|...++    ++|...++ ...+   .....    ...
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt-~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~---~~~~~----~~~  168 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKT-THILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQ----WCG  168 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHH-HHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHH----HHT
T ss_pred             ccCccccceeEeccCccccch-hhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc---cccch----hcc
Confidence            456789999998743332332 23333333348999999999987764    47765332 2222   11111    123


Q ss_pred             CCCccEEE-E--cCCCh-------------------------hHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCF-E--CTGVP-------------------------SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...||.|+ |  |+|..                         ..+..+++.++++ |++|....
T Consensus       169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvYsTC  231 (284)
T d1sqga2         169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYATC  231 (284)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEES
T ss_pred             cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEEeee
Confidence            34799888 6  76651                         1466777789998 88776543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.95  E-value=0.063  Score=40.33  Aligned_cols=35  Identities=20%  Similarity=0.193  Sum_probs=29.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      ..+|||+|+ |-+|...+..+...|. +|+++++++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCc
Confidence            457999987 9999999998888998 8999888653

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.17  Score=32.84  Aligned_cols=89  Identities=19%  Similarity=0.248  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCH--H---------HHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGLGT--V---------GLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~g~--~---------G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      .-++|||+|+|+  +         +..++..+|..|+ +++.+.++++....-... +|+++-..= +.+++.+.+++  
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfePl-t~e~v~~Ii~~--   80 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEPI-HWEVVRKIIEK--   80 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSCC-CHHHHHHHHHH--
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeecC-CHHHHHHHHHH--
Confidence            447899999864  2         3455666778899 899999998876432222 344442211 22344444433  


Q ss_pred             CCCCccEEEEcCCChhHHHHHHHHccc
Q 025336          138 HGMGVDYCFECTGVPSLLSEALETTKV  164 (254)
Q Consensus       138 ~~~~~d~v~d~~g~~~~~~~~~~~l~~  164 (254)
                        .++|.++-+.|+...++.+.++...
T Consensus        81 --E~pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          81 --ERPDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             --HCCSEEECSSSHHHHHHHHHHHHHT
T ss_pred             --hCcCCeEEEeeeehHhHHHHHHHHc
Confidence              2889999999987666666665443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.92  E-value=0.031  Score=42.98  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=28.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      .++||+|+ |-+|..++..+...|. +|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence            47899987 9999999999999999 99999874

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.056  Score=41.61  Aligned_cols=72  Identities=18%  Similarity=0.132  Sum_probs=44.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc----ccHHHHHhc---CCceE-eCCCCCCCchHHHHHHHhhCCCCc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP----WKKEKGEAF---GMTDF-INPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~----~~~~~~~~~---g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      +|||+|+ |-+|+.++..+...|. +|+++++..    +.....+.+   ....+ .|-.+  .+.+.+.+++    .++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~l~~~~~~----~~~   74 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN--EALMTEILHD----HAI   74 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC--HHHHHHHHHH----TTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC--HHHHHHHHhc----cCC
Confidence            5999987 9999999999999999 899987522    222222222   22222 23333  1223233332    279


Q ss_pred             cEEEEcCC
Q 025336          143 DYCFECTG  150 (254)
Q Consensus       143 d~v~d~~g  150 (254)
                      |+||.+++
T Consensus        75 d~ViHlAa   82 (338)
T d1udca_          75 DTVIHFAG   82 (338)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCC
Confidence            99999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.90  E-value=0.015  Score=41.00  Aligned_cols=40  Identities=33%  Similarity=0.390  Sum_probs=34.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      ++|.|+|+|.+|...+.++...|+ +|+..+.+++..+.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~   44 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGL   44 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhh
Confidence            569999999999998888888999 9999999988766553

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.89  E-value=0.015  Score=42.65  Aligned_cols=38  Identities=18%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHH
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKE  108 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~  108 (254)
                      ++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~   39 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREGED   39 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccccc
Confidence            357899986 8999999999999999 9999998876543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=94.88  E-value=0.32  Score=33.52  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=76.5

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHcCCC-eEEEE-cCCcccHHH-HHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           72 SVAVLGLGTVGLG-AVDGARMQGAA-KIIGI-DKNPWKKEK-GEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        72 ~vlI~G~g~~G~~-~~~~a~~~g~~-~v~~v-~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +|.|+|.|.+|.- .+...+...-. +++++ ++++++.+. .+.++...++       .++.+.+.    ...+|+|+-
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~-------~~~~ell~----~~~id~v~I   73 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF-------DSYEELLE----SGLVDAVDL   73 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE-------SCHHHHHH----SSCCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee-------eeeecccc----ccccceeec
Confidence            5789999999964 46666654431 56644 566665554 4557765554       22333332    237999999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEccCCC-ceeec-cHHHHH-hCCCEE-EeeecCCCCCCCCHHHHHHHHhCCCC
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVPL-NVIALA-CGGRTL-KGTTFGGIKTKSDLPILLDKCKNKEF  220 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~-~~~~~~-~~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~  220 (254)
                      |+......+.+..++..  |+=|.+.-+.. +.... ....+. .++..+ .+...........+..+.+++++|++
T Consensus        74 ~tp~~~h~~~~~~al~~--gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~i  148 (181)
T d1zh8a1          74 TLPVELNLPFIEKALRK--GVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKP  148 (181)
T ss_dssp             CCCGGGHHHHHHHHHHT--TCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred             ccccccccccccccccc--chhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCC
Confidence            98877667777777776  45555554432 11110 111122 234333 33332111112447788889999885

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.84  E-value=0.033  Score=36.83  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=33.8

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ..++++.+|+|+|+|.+|.=++..++..|. +|..+++.+
T Consensus        30 ~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          30 RQLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             HhhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            345567899999999999999999999999 999997765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.83  E-value=0.021  Score=43.58  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .....+|+|+|+|..|+.++..+...|. +|++++.++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3445689999999999999998888999 999998764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.82  E-value=0.17  Score=33.93  Aligned_cols=39  Identities=38%  Similarity=0.443  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCccc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWK  106 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~  106 (254)
                      ..+.+|.|+|+|.+|..++..+...+. .+++.+|.++++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            356789999999999998888887774 479999988765

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=94.81  E-value=0.081  Score=36.38  Aligned_cols=100  Identities=17%  Similarity=0.177  Sum_probs=56.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc--ccHHHHHhc----CC---c------e-EeCCCCC---CCchHHHH
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP--WKKEKGEAF----GM---T------D-FINPDDE---PNKSISEL  132 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~--~~~~~~~~~----g~---~------~-v~~~~~~---~~~~~~~~  132 (254)
                      +|.|.|-|-+|+++.+.+...+. +++++-...  +.+.++-++    |.   .      . .++.+..   ...+.. .
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~-~   79 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK-E   79 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG-G
T ss_pred             EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChH-H
Confidence            57899999999999999888888 777763322  233333222    21   0      0 1111000   001110 1


Q ss_pred             HHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          133 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       133 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +. +. ..++|+|+||+|.-...+.+...+..+ .+-|+++.+.
T Consensus        80 i~-W~-~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~  120 (168)
T d2g82a1          80 IP-WA-EAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAPA  120 (168)
T ss_dssp             CC-TG-GGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             Cc-cc-ccCCceeEeccccccchHHhhhhhccc-cceeeecccc
Confidence            11 11 128999999999765667777777766 5555555544

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.79  E-value=0.075  Score=41.21  Aligned_cols=73  Identities=15%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc-eEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +.-+|||+|+ |-+|..++..+...|. +|+++++.+............ ...|..+     ..... +..  .++|.|+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~D~~~-----~~~~~-~~~--~~~d~Vi   84 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMTEDMFCDEFHLVDLRV-----MENCL-KVT--EGVDHVF   84 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSCGGGTCSEEEECCTTS-----HHHHH-HHH--TTCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccchhhhcccCcEEEeechh-----HHHHH-HHh--hcCCeEe
Confidence            5678999986 9999999999999999 999987654332111111111 1233332     32222 222  2789999


Q ss_pred             EcCC
Q 025336          147 ECTG  150 (254)
Q Consensus       147 d~~g  150 (254)
                      .+.+
T Consensus        85 h~a~   88 (363)
T d2c5aa1          85 NLAA   88 (363)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            8774

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.73  E-value=0.063  Score=39.71  Aligned_cols=42  Identities=12%  Similarity=0.051  Sum_probs=32.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHH-HHH--HcCCCeEEEEcCCcccHHHHH
Q 025336           69 KGSSVAVLGL-GTVGLGAVD-GAR--MQGAAKIIGIDKNPWKKEKGE  111 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~-~a~--~~g~~~v~~v~~~~~~~~~~~  111 (254)
                      .|+.++|+|+ +++|.+.++ +++  ..|+ +|+.+++++++.+.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK   50 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence            3566778887 899998765 555  3688 9999999998877653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.33  Score=32.36  Aligned_cols=94  Identities=10%  Similarity=0.018  Sum_probs=57.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHH----HHHhcCCceEe-CCCCCCCchHHHHHHHhhCCCCccE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKE----KGEAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~----~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      .++|+|.|.|.+|..+++.+...|. ++++++.++++..    .++..|...+. |..+   ++   .+++. +-...|.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d---~~---~L~~a-~i~~a~~   74 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIPGDSND---SS---VLKKA-GIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS---HH---HHHHH-TTTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcEEEEccCcc---hH---HHHHh-ccccCCE
Confidence            3579999999999999999999999 8888888875432    22334554333 2222   32   33333 3337899


Q ss_pred             EEEcCCChhH-HH--HHHHHcccCCcEEEEE
Q 025336          145 CFECTGVPSL-LS--EALETTKVGKGKVIVI  172 (254)
Q Consensus       145 v~d~~g~~~~-~~--~~~~~l~~~~G~~v~~  172 (254)
                      ++-+++.... +.  ...+.+.+. -+++..
T Consensus        75 vi~~~~~d~~n~~~~~~~r~~~~~-~~iia~  104 (153)
T d1id1a_          75 ILALSDNDADNAFVVLSAKDMSSD-VKTVLA  104 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred             EEEccccHHHHHHHHHHHHHhCCC-CceEEE
Confidence            9988876432 11  223334555 555544

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.68  E-value=0.03  Score=39.25  Aligned_cols=86  Identities=21%  Similarity=0.253  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .|.+|.|+|.|.+|...+++++.+|+ +|++.++++...       .....       .++.+.+      ...|+++-+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~~-------~~~~~-------~~l~ell------~~sDiv~~~   99 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEG-------PWRFT-------NSLEEAL------REARAAVCA   99 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCCS-------SSCCB-------SCSHHHH------TTCSEEEEC
T ss_pred             cCceEEEeccccccccceeeeecccc-cccccccccccc-------ceeee-------echhhhh------hccchhhcc
Confidence            57899999999999999999999999 999998765321       11111       1222222      167888876


Q ss_pred             CCC-hhH----HHHHHHHcccCCcEEEEEccCC
Q 025336          149 TGV-PSL----LSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +.. +.+    -...+..++++ ..+|-++...
T Consensus       100 ~pl~~~t~~li~~~~l~~mk~~-ailIN~~RG~  131 (181)
T d1qp8a1         100 LPLNKHTRGLVKYQHLALMAED-AVFVNVGRAE  131 (181)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-CEEEECSCGG
T ss_pred             cccccccccccccceeeecccc-ceEEeccccc
Confidence            643 211    14677788888 8888877543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.67  E-value=0.075  Score=37.73  Aligned_cols=40  Identities=25%  Similarity=0.422  Sum_probs=35.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA  112 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~  112 (254)
                      +|.|+|+|-+|+.++..+...|. +|+++|.++++.+.+.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            58899999999998888888999 99999999998888765

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.67  E-value=0.036  Score=39.36  Aligned_cols=49  Identities=24%  Similarity=0.355  Sum_probs=36.0

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG  114 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g  114 (254)
                      ....+ .|++||=.|+|+ |.+++. +...|+++|++++.+++..+.+++.-
T Consensus        43 ~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~   91 (197)
T d1ne2a_          43 NDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNC   91 (197)
T ss_dssp             HHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHC
T ss_pred             HcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHcc
Confidence            44555 589999998763 554443 44567768999999999988888754

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.65  E-value=0.026  Score=40.23  Aligned_cols=88  Identities=25%  Similarity=0.213  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+.+|.|+|.|.+|+.++++++..|+ +|++.++...+...   ..    +..     .++.+.+.      ..|++.-+
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~---~~----~~~-----~~l~~l~~------~~D~v~~~  104 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKGDH---PD----FDY-----VSLEDLFK------QSDVIDLH  104 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSSCC---TT----CEE-----CCHHHHHH------HCSEEEEC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccchhhh---cc----hhH-----HHHHHHHH------hcccceee
Confidence            46799999999999999999999999 99999876433110   00    111     12222221      45777765


Q ss_pred             CCC-hhH----HHHHHHHcccCCcEEEEEccCC
Q 025336          149 TGV-PSL----LSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      +.. +.+    -...+..++++ ..+|-.+...
T Consensus       105 ~plt~~T~~li~~~~l~~mk~~-a~lIN~aRG~  136 (199)
T d1dxya1         105 VPGIEQNTHIINEAAFNLMKPG-AIVINTARPN  136 (199)
T ss_dssp             CCCCGGGTTSBCHHHHHHSCTT-EEEEECSCTT
T ss_pred             ecccccccccccHHHhhccCCc-eEEEecccHh
Confidence            543 211    24667778887 7777776643

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.60  E-value=0.21  Score=35.44  Aligned_cols=97  Identities=13%  Similarity=0.020  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      +..||=+|.|. |..++.+|+..--..+++++.++.....+.    +.+.+++--..    .+.......+ ....+|.|
T Consensus        30 ~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~----~Da~~l~~~~-~~~~~d~v  103 (204)
T d2fcaa1          30 NPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLN----IDADTLTDVF-EPGEVKRV  103 (204)
T ss_dssp             CCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEEC----CCGGGHHHHC-CTTSCCEE
T ss_pred             CceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcc----cchhhhhccc-Cchhhhcc
Confidence            34566668775 888999999764449999999988777653    45655432122    1222222223 33378887


Q ss_pred             EEcCCC--------------hhHHHHHHHHcccCCcEEEEEc
Q 025336          146 FECTGV--------------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       146 ~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      +-....              +..++.+.+.|+|+ |.+.+..
T Consensus       104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~T  144 (204)
T d2fcaa1         104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFKT  144 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEEE
T ss_pred             ccccccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence            754332              24688899999999 9987764

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.60  E-value=0.23  Score=34.04  Aligned_cols=98  Identities=20%  Similarity=0.293  Sum_probs=60.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---CcccHHHHHhc----CC---c-------eEeCCC------CCCCch
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDK---NPWKKEKGEAF----GM---T-------DFINPD------DEPNKS  128 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~---~~~~~~~~~~~----g~---~-------~v~~~~------~~~~~~  128 (254)
                      +|.|.|-|-+|+++.+.+...+. +++++-.   +.+.+.++-++    |.   +       .+++.+      ..++.+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            58899999999999999988888 6766632   22445554332    21   1       111111      001111


Q ss_pred             HHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       129 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      + . +.+    .++|+|+||+|.-...+.+...+..+ .+-|++..+..
T Consensus        81 i-~-W~~----~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP~~  122 (169)
T d1dssg1          81 I-P-WSK----AGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAPSA  122 (169)
T ss_dssp             C-C-HHH----HTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSCCS
T ss_pred             C-C-ccc----cCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCCcc
Confidence            1 0 111    28999999999866677888888877 66666665543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.55  E-value=0.0067  Score=47.05  Aligned_cols=93  Identities=23%  Similarity=0.252  Sum_probs=52.2

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCC-c--eEeCCCCCCCchHHHHHHHhh
Q 025336           65 AEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGM-T--DFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        65 ~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~-~--~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ....+|++||-+|+|. |.++..++ ..|+++|++++.++ ..+.++    ..+. +  .++..+.   .++     .+ 
T Consensus        34 ~~~~~~~~VLDlGcGt-G~ls~~aa-~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~---~~l-----~~-  101 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGT-GILSMFAA-KHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL---EDV-----HL-  101 (328)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHH-HTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TTS-----CC-
T ss_pred             cccCCcCEEEEeCCCC-CHHHHHHH-HhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh---hhc-----cC-
Confidence            3456899999999763 65555444 46877999998875 344443    3342 1  1232221   111     11 


Q ss_pred             CCCCccEEEEcC-C----Chh----HHHHHHHHcccCCcEEE
Q 025336          138 HGMGVDYCFECT-G----VPS----LLSEALETTKVGKGKVI  170 (254)
Q Consensus       138 ~~~~~d~v~d~~-g----~~~----~~~~~~~~l~~~~G~~v  170 (254)
                      ....+|+++... +    .+.    .+...-+.|+|+ |+++
T Consensus       102 ~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii  142 (328)
T d1g6q1_         102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF  142 (328)
T ss_dssp             SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             cccceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence            234799987522 2    111    233344689998 9875

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.51  E-value=0.34  Score=33.11  Aligned_cols=96  Identities=20%  Similarity=0.252  Sum_probs=56.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc---CCCeEEEEcC--CcccHHHHHhc----CC---c---------------eEeCCCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQ---GAAKIIGIDK--NPWKKEKGEAF----GM---T---------------DFINPDDE  124 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~---g~~~v~~v~~--~~~~~~~~~~~----g~---~---------------~v~~~~~~  124 (254)
                      +|.|.|-|-+|+++.+.+...   .. +|+++-.  +.+.+.++-++    |.   +               .++..++ 
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~-   79 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD-   79 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS-
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCC-
Confidence            688999999999999877642   35 6777622  22334443221    21   1               1111111 


Q ss_pred             CCchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          125 PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       125 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                       +.++  .+.+.    ++|+|+||+|.-...+.+...+..+ -+-|++..+..
T Consensus        80 -p~~i--~W~~~----gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSAP~k  124 (169)
T d1hdgo1          80 -PSKL--PWKDL----GVDFVIESTGVFRNREKAELHLQAG-AKKVIITAPAK  124 (169)
T ss_dssp             -GGGS--CHHHH----TCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCCB
T ss_pred             -hhhC--Ccccc----CCCEEEEecceeccccchhhhccCC-CceEEEecccC
Confidence             1111  11111    8999999999765667777788776 65566655543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.48  E-value=0.079  Score=36.89  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEEEE-cCCcccHHH-HHhcCCc---eEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           72 SVAVLGLGTVGLGAVDGARMQ-GAAKIIGI-DKNPWKKEK-GEAFGMT---DFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v-~~~~~~~~~-~~~~g~~---~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      +|.|+|.|.+|...++..+.. ++ +++++ ++++++.+. +++++..   .++       .++.+.+.    ...+|+|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~----~~~iD~v   70 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIH-------GSYESLLE----DPEIDAL   70 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEE-------SSHHHHHH----CTTCCEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeec-------CcHHHhhh----cccccee
Confidence            578999999998888877765 56 77755 556655444 4555532   233       23333332    2389999


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +-++......+.+..++..+  .=+.+.-+
T Consensus        71 ~I~tp~~~h~~~~~~~l~~g--~~v~~EKP   98 (184)
T d1ydwa1          71 YVPLPTSLHVEWAIKAAEKG--KHILLEKP   98 (184)
T ss_dssp             EECCCGGGHHHHHHHHHTTT--CEEEECSS
T ss_pred             eecccchhhcchhhhhhhcc--ceeecccc
Confidence            99998877788888888864  44555543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.45  E-value=0.022  Score=41.82  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .|+|+|+|..|+.++..++..|.++|++.++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            489999999999999999999974699997764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.44  E-value=0.019  Score=43.27  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .|+|+|+|+.|++++..++..|. +|+++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            48999999999999999999999 899998865

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.41  E-value=0.035  Score=40.63  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      ...+|+|+|+|..|++++..+...|. +|.++++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            34579999999999999999999999 99999864

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.053  Score=40.58  Aligned_cols=104  Identities=11%  Similarity=-0.022  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-------CCCeEEEEcCCcccHHHHHhc-C-----CceEeCCCCCCCchHHHHHH
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQ-------GAAKIIGIDKNPWKKEKGEAF-G-----MTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~-------g~~~v~~v~~~~~~~~~~~~~-g-----~~~v~~~~~~~~~~~~~~i~  134 (254)
                      ++.-+||-+|+|. |..+..+++.+       +. ++++++.++...+.+++. .     ....++....+.+++.....
T Consensus        39 ~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~-~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          39 KSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             CSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEE-EEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCce-EEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            4444788888753 44444444421       23 678999998888877652 1     11122222201122222222


Q ss_pred             HhhCCCCccEEEEcCC-----C-hhHHHHHHHHcccCCcEEEEEcc
Q 025336          135 GITHGMGVDYCFECTG-----V-PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .......||+|+-.-.     . ...+..+.+.|+|+ |.+++...
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~~  161 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIVV  161 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEEe
Confidence            2223448999986332     2 34688999999999 98876643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.40  E-value=0.029  Score=41.67  Aligned_cols=34  Identities=18%  Similarity=0.285  Sum_probs=29.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      .|+|+|+|+.|++++.+++..|..+|.+++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            5899999999999999999999657888877643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.39  E-value=0.037  Score=35.50  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=29.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ++++|+|+|.+|.=+++.++.+|. +|..+++.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            689999999999999999999999 999996664

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.38  E-value=0.16  Score=34.55  Aligned_cols=130  Identities=12%  Similarity=0.093  Sum_probs=74.0

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCCeEEEEcCCcccHHHH-HhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           72 SVAVLGLGTVGLG-AVDGARMQ-GAAKIIGIDKNPWKKEKG-EAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        72 ~vlI~G~g~~G~~-~~~~a~~~-g~~~v~~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +|.|+|+|.+|.- .....+.. +. ++++++.++++.+.+ +.++...+++..+       +    +.. ..+|+|+-|
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~----ll~-~~iD~V~I~   69 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTDYR-------D----VLQ-YGVDAVMIH   69 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSSTT-------G----GGG-GCCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhcccccccccHH-------H----hcc-cccceeccc
Confidence            5789999999954 55566544 45 777777777766654 4567554432211       1    112 279999999


Q ss_pred             CCChhHHHHHHHHcccCCcEEEEEccCCC-ceee-ccHHHH-HhCCCEE-EeeecCCCCCCCCHHHHHHHHhCCCC
Q 025336          149 TGVPSLLSEALETTKVGKGKVIVIGVGVD-TMVP-LNVIAL-ACGGRTL-KGTTFGGIKTKSDLPILLDKCKNKEF  220 (254)
Q Consensus       149 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~-~~~~~~-~~~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~  220 (254)
                      +......+.+..++..+  +=|.+.-+.. +... .....+ -.++..+ .|..    .....+.++.+.+..|++
T Consensus        70 tp~~~H~~~~~~al~~g--k~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~----r~~~~~~~~~~~~~~G~i  139 (167)
T d1xeaa1          70 AATDVHSTLAAFFLHLG--IPTFVDKPLAASAQECENLYELAEKHHQPLYVGFN----GFDAMVQDWLQVAAAGKL  139 (167)
T ss_dssp             SCGGGHHHHHHHHHHTT--CCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECG----THHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccc--cccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEeC----cCCHHHHHHHHHhhcCCC
Confidence            98877778888888865  4455544332 1110 111111 1234433 2321    112346667777777774

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.037  Score=42.27  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      ++..+|+|+|+|..|+.++..+...|. +|++.+.++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            456789999999999999999999999 999997654

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.31  E-value=0.27  Score=35.65  Aligned_cols=118  Identities=18%  Similarity=0.143  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEcCC------cccHHH-----H-HhcCCceEeCCCCCCCchHHHHHH
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGA-RMQGAAKIIGIDKN------PWKKEK-----G-EAFGMTDFINPDDEPNKSISELVK  134 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a-~~~g~~~v~~v~~~------~~~~~~-----~-~~~g~~~v~~~~~~~~~~~~~~i~  134 (254)
                      -++.+|+|.|.|.+|..+++++ +..|+ ++++++.+      ++.++.     . +..+.  +..+.....-+ .+.+.
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~--~~~~~~~~~~~-~~~~~  104 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVSDSRGGIYNPEGFDVEELIRYKKEHGT--VVTYPKGERIT-NEELL  104 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEEETTEEEECTTCCCHHHHHHHHHHSSC--STTCSSCEEEC-HHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEeecCCCcEEeccccchHHHHHHHHhhcc--eeccccceeec-ccccc
Confidence            4688999999999999999887 57899 88877532      222211     1 11221  11111100001 11121


Q ss_pred             HhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCCceeeccHH-HHHhCCCEEEeee
Q 025336          135 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDTMVPLNVI-ALACGGRTLKGTT  198 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~  198 (254)
                         . ..+|+.+=|.-....-....+.+...    ++++.... +.+.... .|..+++.+.+-.
T Consensus       105 ---~-~~~DI~~PcA~~~~I~~~~a~~l~~~----~I~e~AN~-p~t~~a~~~L~~rgI~~~PD~  160 (234)
T d1b26a1         105 ---E-LDVDILVPAALEGAIHAGNAERIKAK----AVVEGANG-PTTPEADEILSRRGILVVPDI  160 (234)
T ss_dssp             ---T-SCCSEEEECSCTTCBCHHHHTTCCCS----EEECCSSS-CBCHHHHHHHHHTTCEEECHH
T ss_pred             ---c-cccceeecchhcccccHHHHHHhhhc----eEeecCCC-CCCHHHHHHHHHCCeEEechH
Confidence               2 28999998876543445555566543    33444443 2222222 2556788877644

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=94.29  E-value=0.052  Score=40.16  Aligned_cols=102  Identities=10%  Similarity=-0.143  Sum_probs=66.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC-CceEeCCCCCCCchHHHHHHHhh-CCC
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG-MTDFINPDDEPNKSISELVKGIT-HGM  140 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~i~~~~-~~~  140 (254)
                      ......++.+||=+|+|. |..+..+++..+. +|++++.+++-.+.+++.- ....++...   .+.    .++. ...
T Consensus        87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~---~d~----~~~~~~~~  157 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFIL---ASM----ETATLPPN  157 (254)
T ss_dssp             HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEE---SCG----GGCCCCSS
T ss_pred             hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEE---ccc----cccccCCC
Confidence            444556778899999875 8888888877666 8999999999888887642 111122111   111    1121 223


Q ss_pred             CccEEEEcCC-----Ch---hHHHHHHHHcccCCcEEEEEcc
Q 025336          141 GVDYCFECTG-----VP---SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       141 ~~d~v~d~~g-----~~---~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .||+|+-.-.     .+   ..+..+.+.|+++ |.++....
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e~  198 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKEN  198 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEec
Confidence            7999985332     11   2477888899999 99887543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.28  E-value=0.15  Score=35.38  Aligned_cols=85  Identities=9%  Similarity=-0.057  Sum_probs=49.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHHHHhcCCceE----eCCCC-CCCchHHHHHHHhhCCCCccE
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW--KKEKGEAFGMTDF----INPDD-EPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~~~~~g~~~v----~~~~~-~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      +|.|+|+|..|.+.+..+...|. +|....+..+  ..+..........    +.... ....+..+.+      ...|+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~ad~   74 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL------ENAEV   74 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH------TTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH------hccch
Confidence            58899999999998888888888 8988866433  2333322111000    00000 0012232222      27899


Q ss_pred             EEEcCCChhHHHHHHHHccc
Q 025336          145 CFECTGVPSLLSEALETTKV  164 (254)
Q Consensus       145 v~d~~g~~~~~~~~~~~l~~  164 (254)
                      ++-++... .+...++.+.+
T Consensus        75 Ii~avps~-~~~~~~~~l~~   93 (180)
T d1txga2          75 VLLGVSTD-GVLPVMSRILP   93 (180)
T ss_dssp             EEECSCGG-GHHHHHHHHTT
T ss_pred             hhcccchh-hhHHHHHhhcc
Confidence            99999876 45655554443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.25  E-value=0.18  Score=38.13  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=33.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc--cHHHHHhcC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW--KKEKGEAFG  114 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~--~~~~~~~~g  114 (254)
                      .+|||+|+ |-+|..++..+...|+ +|+++++...  ..+.++.++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~   46 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELG   46 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhc
Confidence            47999987 9999999998888899 9999987543  334455544

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.21  E-value=0.15  Score=39.14  Aligned_cols=31  Identities=26%  Similarity=0.211  Sum_probs=27.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      ..|||+|+ |-+|..++..+...|. +|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC
Confidence            46899987 9999999999888999 8999865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.20  E-value=0.033  Score=42.65  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      ..+|+|+|||..|+.++..+...|. +|++++.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCCC
Confidence            4689999999999999999888899 9999977753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.19  E-value=0.14  Score=38.00  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWK  106 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~  106 (254)
                      .+|||+|+ |-+|..++..+...|. +|++++++...
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~   39 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTA   39 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCcc
Confidence            57999997 9999999999999999 89999887543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.10  E-value=0.18  Score=38.71  Aligned_cols=38  Identities=18%  Similarity=0.195  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccH
Q 025336           69 KGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKK  107 (254)
Q Consensus        69 ~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~  107 (254)
                      +..+|||+|+ |.+|..++..+...|. +|+++.++..+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchh
Confidence            4578999987 9999999999999999 899998876654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.04  E-value=0.24  Score=38.67  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=28.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      |.+|||+|+ |-+|..+++.+...|. +|+++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iDn   33 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVDN   33 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEec
Confidence            678999987 9999999999999999 9999863

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.90  E-value=0.036  Score=40.55  Aligned_cols=32  Identities=41%  Similarity=0.507  Sum_probs=28.3

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      |+|+|+|+.|+.++..+...|. +|+++++++.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            7899999999998888888999 9999987654

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.90  E-value=0.24  Score=37.86  Aligned_cols=37  Identities=19%  Similarity=0.118  Sum_probs=29.2

Q ss_pred             CCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCcccH
Q 025336           70 GSSVAVLGL---GTVGLGAVDGARMQGAAKIIGIDKNPWKK  107 (254)
Q Consensus        70 ~~~vlI~G~---g~~G~~~~~~a~~~g~~~v~~v~~~~~~~  107 (254)
                      ++..||+|+   .++|.+.++.+...|+ +|+.+.++.+..
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~   41 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYN   41 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhh
Confidence            456788884   3899999999999999 888887665433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.89  E-value=0.1  Score=35.11  Aligned_cols=67  Identities=13%  Similarity=0.165  Sum_probs=43.0

Q ss_pred             CCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHHHHhhCC
Q 025336           69 KGSSVAVLGL--GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        69 ~~~~vlI~G~--g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      +|.+||=+++  |.+|+   .. ...|+++|+.++.+++-.+.+++    ++..   .++.      .+..+.+... . 
T Consensus        14 ~g~~vlDl~~GtG~~~i---ea-~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~------~D~~~~l~~~-~-   81 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAI---EA-VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK------MEAERAIDCL-T-   81 (152)
T ss_dssp             CSCEEEEETCTTCHHHH---HH-HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC------SCHHHHHHHB-C-
T ss_pred             CCCeEEEcCCccCHHHH---HH-HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc------cccccccccc-c-
Confidence            6888888854  55554   33 34688899999999887776654    4542   2332      3444445432 3 


Q ss_pred             CCccEEEE
Q 025336          140 MGVDYCFE  147 (254)
Q Consensus       140 ~~~d~v~d  147 (254)
                      ..||+||-
T Consensus        82 ~~fDiIf~   89 (152)
T d2esra1          82 GRFDLVFL   89 (152)
T ss_dssp             SCEEEEEE
T ss_pred             cccceeEe
Confidence            38999984

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=93.87  E-value=0.037  Score=40.78  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      |+|+|+|+.|++++-.+...|. +|++++++++
T Consensus         7 ViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           7 NIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            8899999999999988888999 8999988764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.85  E-value=0.045  Score=40.29  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      .|||+|+ +++|++.++.+...|+ +|+.++++++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~   36 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence            5788886 8999999999999999 9999987654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=93.81  E-value=0.024  Score=41.95  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=58.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc-eEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT-DFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++++++||=+|+|. |..+..+++. |..+|+++|.+++.++.+++    .+.. .+.-..    .+...  .....+..
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~----~D~~~--~~~~~~~~   93 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA----QDSYG--RHMDLGKE   93 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEE----SCTTT--SCCCCSSC
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEE----cchhh--hccccccc
Confidence            56889999999764 6666677665 44489999999998888864    2321 111000    00000  00112347


Q ss_pred             ccEEEEcCCC------h----hHHHHHHHHcccCCcEEEEE
Q 025336          142 VDYCFECTGV------P----SLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       142 ~d~v~d~~g~------~----~~~~~~~~~l~~~~G~~v~~  172 (254)
                      ||+|+..-.-      .    ..+..+.+.|+|+ |.++..
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g-G~~i~~  133 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG-GYFIMT  133 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC-CEEEEE
Confidence            9999854321      1    2455667789999 988753

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.80  E-value=0.034  Score=39.89  Aligned_cols=31  Identities=32%  Similarity=0.303  Sum_probs=27.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|+.|+.++..+..+|. +|++++..+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            7889999999999999999999 899987653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.77  E-value=0.079  Score=35.89  Aligned_cols=41  Identities=20%  Similarity=0.175  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHH
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKE  108 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~  108 (254)
                      ++..+|.|+|+|.+|..++.++...+..+++.++.++++.+
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~   45 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE   45 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence            45678999999999998888888888768999988876543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.038  Score=38.31  Aligned_cols=29  Identities=21%  Similarity=0.256  Sum_probs=26.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      |+|+|+|+.|+.++..+.+.|. +|+++++
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            7899999999999999999999 8888864

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=93.63  E-value=0.46  Score=35.87  Aligned_cols=57  Identities=16%  Similarity=0.198  Sum_probs=40.6

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC--CcccHHHHHhcCCceEe
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK--NPWKKEKGEAFGMTDFI  119 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~--~~~~~~~~~~~g~~~v~  119 (254)
                      ....+.++..|+...+|+-|+++...++.+|.+-++++..  ++.+.+.++.+|+..+.
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEe
Confidence            4455677776665567999999999999999954444433  34577777888886553

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=93.63  E-value=0.11  Score=38.71  Aligned_cols=36  Identities=14%  Similarity=0.152  Sum_probs=27.2

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-cccHHH
Q 025336           73 VAVLGL-GTVGLGAVDGARMQGAAKIIGIDKN-PWKKEK  109 (254)
Q Consensus        73 vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~-~~~~~~  109 (254)
                      +||+|+ +++|.+.++.+...|+ +|+..+++ +++.+.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~   42 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA   42 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHH
Confidence            467786 8999999999999999 88776554 344433

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.012  Score=42.61  Aligned_cols=98  Identities=10%  Similarity=-0.082  Sum_probs=63.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcC----CceEeCCCCCCCchHHHHHHHhh-CCC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFG----MTDFINPDDEPNKSISELVKGIT-HGM  140 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~i~~~~-~~~  140 (254)
                      ...++.+||-+|+|. |..+..+++..+. +|++++.+++-.+.+++..    ...+ ....   .+.    .++. ...
T Consensus        57 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~-~f~~---~d~----~~~~~~~~  126 (222)
T d2ex4a1          57 NKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVR-NYFC---CGL----QDFTPEPD  126 (222)
T ss_dssp             -CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEE-EEEE---CCG----GGCCCCSS
T ss_pred             CCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccc-cccc---ccc----cccccccc
Confidence            456778899999874 7777777766666 8999999999888887632    1111 1111   111    1111 234


Q ss_pred             CccEEEEcC-----CCh---hHHHHHHHHcccCCcEEEEEcc
Q 025336          141 GVDYCFECT-----GVP---SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       141 ~~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .||+|+...     ..+   ..+..+.+.|+++ |.++....
T Consensus       127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~~  167 (222)
T d2ex4a1         127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKDN  167 (222)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEEc
Confidence            799998633     222   3577888899999 99887643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.58  E-value=0.034  Score=37.56  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      .|.+|||+|+|.+|.--+..+...|+ +|+++..
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            58899999999999999999999999 8888854

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.54  E-value=0.067  Score=34.59  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +.+.+++|.|+|.+|.=+++.+...|. +|..+.+++
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            345789999999999999999999999 999997664

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.021  Score=40.14  Aligned_cols=36  Identities=25%  Similarity=0.165  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      ++..|+|+|+|+.|+.++..+.+.|. +|+++++...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeecc
Confidence            44579999999999999999999999 8888865543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.086  Score=42.11  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      +.+|||+|+|++|.-++..+-..|.+++..+|.+.=
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            467999999999999999999999999999988653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.46  E-value=0.067  Score=36.66  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAA-KIIGIDKNP  104 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~-~v~~v~~~~  104 (254)
                      .|.+|+|+|+|.+|+.+++.++..+.. +|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            478999999999999999888887742 788887665

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.45  E-value=0.032  Score=40.21  Aligned_cols=98  Identities=21%  Similarity=0.173  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh----cCCceEeCCCCCCCchHHHHHHH---hhCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA----FGMTDFINPDDEPNKSISELVKG---ITHG  139 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~---~~~~  139 (254)
                      .+..+||-+|.+. |..++.+|+.+.. .+|+.++.+++..+.+++    .|...-+....   .+..+.+.+   ....
T Consensus        55 ~kpk~ILEiGt~~-G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~---Gd~~e~l~~l~~~~~~  130 (214)
T d2cl5a1          55 YSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILN---GASQDLIPQLKKKYDV  130 (214)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHGGGHHHHSCC
T ss_pred             hCCCEEEEEccCc-hhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeee---ccccccccchhhcccc
Confidence            3457899999643 6677778876532 399999999988887754    45322121222   333333333   2233


Q ss_pred             CCccEEEEcCCChh-----HHHHHHHHcccCCcEEE
Q 025336          140 MGVDYCFECTGVPS-----LLSEALETTKVGKGKVI  170 (254)
Q Consensus       140 ~~~d~v~d~~g~~~-----~~~~~~~~l~~~~G~~v  170 (254)
                      ..||++|--.....     .+...++.++++ |.++
T Consensus       131 ~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-GvIv  165 (214)
T d2cl5a1         131 DTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TVLL  165 (214)
T ss_dssp             CCEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EEEE
T ss_pred             cccceeeecccccccccHHHHHHHhCccCCC-cEEE
Confidence            47998883332221     133445668897 7644

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.45  E-value=0.037  Score=41.40  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=28.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +|+|+|+|..|+.++..+...|. +|++.++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            48999999999999999999999 899998753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.34  E-value=0.18  Score=33.57  Aligned_cols=93  Identities=16%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcC-Cc-----e-EeCCCCCCCchHHHHHHHhhCCCC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFG-MT-----D-FINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g-~~-----~-v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++|.|+|+ |.+|..++.++...+. .+++.++.++.+. .+..+- +.     . .+.  .   .+..+.+      .+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~-~a~Dl~~~~~~~~~~~~~~--~---~~~~~~~------~~   68 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAADLSHIETRATVKGYLG--P---EQLPDCL------KG   68 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHHHHTTSSSSCEEEEEES--G---GGHHHHH------TT
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch-hhHHHhhhhhhcCCCeEEc--C---CChHHHh------CC
Confidence            46899996 9999999999988885 6788888876433 233321 11     1 121  1   3333333      27


Q ss_pred             ccEEEEcCCChh---------------HHHHHH---HHcccCCcEEEEEccCC
Q 025336          142 VDYCFECTGVPS---------------LLSEAL---ETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       142 ~d~v~d~~g~~~---------------~~~~~~---~~l~~~~G~~v~~g~~~  176 (254)
                      .|+|+-+.|.+.               .++...   ....|. +.++..+.+.
T Consensus        69 aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~-~iiivvtNPv  120 (144)
T d1mlda1          69 CDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPD-AMICIISNPV  120 (144)
T ss_dssp             CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEECSSCH
T ss_pred             CCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCC-eEEEEecCch
Confidence            899999888421               122222   223666 8888877653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.46  Score=30.33  Aligned_cols=85  Identities=18%  Similarity=0.066  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCH-----------HHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhh
Q 025336           69 KGSSVAVLGLGT-----------VGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        69 ~~~~vlI~G~g~-----------~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ..++|||+|+|+           .+..+++.+|..|+ +++.+.++++....--.. +|+++-..= +.+.+.+.++.  
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVstd~d~-aD~lYfepl-t~e~v~~Ii~~--   77 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVSTDYDT-SDRLYFEPV-TLEDVLEIVRI--   77 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTTSTTS-SSEEECCCC-SHHHHHHHHHH--
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhcChhh-cCceEEccC-CHHHHHHHHHH--
Confidence            346899999874           23455666778899 999998988876422111 344442211 12333333333  


Q ss_pred             CCCCccEEEEcCCChhHHHHHHH
Q 025336          138 HGMGVDYCFECTGVPSLLSEALE  160 (254)
Q Consensus       138 ~~~~~d~v~d~~g~~~~~~~~~~  160 (254)
                        .++|.++-..|+...++.+..
T Consensus        78 --E~p~~ii~~~GGQtalnla~~   98 (121)
T d1a9xa4          78 --EKPKGVIVQYGGQTPLKLARA   98 (121)
T ss_dssp             --HCCSEEECSSSTHHHHTTHHH
T ss_pred             --hCCCEEEeehhhhhHHHHHHH
Confidence              267888888888744444443

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.42  Score=32.52  Aligned_cols=98  Identities=20%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCc--ccHHHHHh----cC---Cc-------eEeCCC------CCCCch
Q 025336           72 SVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNP--WKKEKGEA----FG---MT-------DFINPD------DEPNKS  128 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~--~~~~~~~~----~g---~~-------~v~~~~------~~~~~~  128 (254)
                      +|.|.|-|-+|+++.+.+.... . +++++-...  +.+.++-+    .|   .+       .+++.+      ..++.+
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            5789999999999999887553 5 666663322  22333322    12   11       111111      001111


Q ss_pred             HHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       129 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +  .+.+    .++|+|+||+|.-...+.+...+..+ .+-|+++.+..
T Consensus        82 i--~W~~----~gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP~~  123 (166)
T d1gado1          82 L--KWDE----VGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPSK  123 (166)
T ss_dssp             G--CHHH----HTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCCS
T ss_pred             C--Cccc----cCCCEEEEccccccCHHHHHHHhcCC-CceEEeecccc
Confidence            1  0111    18999999999765667777888776 66666665543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.17  E-value=0.1  Score=35.25  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      -+++|+|+|+|.+|.=++..+..+|++.|+.+.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            46689999999999999999999999778787554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=93.16  E-value=0.039  Score=38.13  Aligned_cols=82  Identities=20%  Similarity=0.188  Sum_probs=51.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|.|+|.|.+|...+...+.. ++ +++++.....+.     .....+..+.+     .    ... . ..+|+|+.|++
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~-----~~~~~~~~~~~-----~----~~~-~-~~~D~Vvi~tp   67 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATL-----DTKTPVFDVAD-----V----DKH-A-DDVDVLFLCMG   67 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCC-----SSSSCEEEGGG-----G----GGT-T-TTCSEEEECSC
T ss_pred             eEEEECChHHHHHHHHHHHhCCCc-EEEEEEeccccc-----ccccccccchh-----h----hhh-c-cccceEEEeCC
Confidence            588999999999888877754 56 666553332211     11111222111     1    111 1 27899999998


Q ss_pred             ChhHHHHHHHHcccCCcEEEE
Q 025336          151 VPSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~  171 (254)
                      .....+.+.+++..+ -.++.
T Consensus        68 ~~~h~~~a~~aL~aG-~~vv~   87 (170)
T d1f06a1          68 SATDIPEQAPKFAQF-ACTVD   87 (170)
T ss_dssp             TTTHHHHHHHHHTTT-SEEEC
T ss_pred             CcccHHHHHHHHHCC-CcEEE
Confidence            876788888999886 56554

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.08  E-value=0.16  Score=32.34  Aligned_cols=65  Identities=9%  Similarity=0.038  Sum_probs=42.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAA--KIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~--~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      .++++|.|+|.+|.=++..+..+|.+  +|..+.+.+.            ++..-+   ++..+.+.+.....|+++.++
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~------------iL~~~d---~~~~~~l~~~l~~~GV~v~~~   84 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM------------ILRGFD---HTLREELTKQLTANGIQILTK   84 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS------------SSTTSC---HHHHHHHHHHHHHTTCEEEES
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch------------hhcccc---hHHHHHHHHHHHhcCcEEEcC
Confidence            47899999999998888777766642  6888865431            222222   555555555444457888876


Q ss_pred             cC
Q 025336          148 CT  149 (254)
Q Consensus       148 ~~  149 (254)
                      +.
T Consensus        85 ~~   86 (117)
T d1aoga2          85 EN   86 (117)
T ss_dssp             CC
T ss_pred             CE
Confidence            43

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.07  E-value=0.1  Score=38.53  Aligned_cols=34  Identities=32%  Similarity=0.469  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      -+|.+|+|.|.|.+|..+++++...|+ +|++++.
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavsD   67 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLSG   67 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            478899999999999999999999999 8888743

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=93.05  E-value=0.38  Score=32.88  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=57.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcC---CcccHHHHHhc----CC---c-------eEeCCCCC---CCchHH
Q 025336           72 SVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDK---NPWKKEKGEAF----GM---T-------DFINPDDE---PNKSIS  130 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~---~~~~~~~~~~~----g~---~-------~v~~~~~~---~~~~~~  130 (254)
                      +|.|.|-|-+|+++.+.+... .. +++++-.   +.+.+.++-++    |.   +       .+++....   ...+. 
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p-   80 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP-   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG-
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh-
Confidence            588999999999999877755 46 7776622   23444454332    21   1       01111100   00110 


Q ss_pred             HHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          131 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       131 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ..+ .+ ...++|+|+||+|.-...+.+...+..+ -+-|++..+..
T Consensus        81 ~~i-~W-~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSaP~~  124 (169)
T d1u8fo1          81 SKI-KW-GDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAPSA  124 (169)
T ss_dssp             GGC-CT-TTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESSCCS
T ss_pred             hhC-Cc-cccCCCEEEEecceeccHHHHHHHHhcC-CceEeeccccc
Confidence            011 11 1238999999999765667777778777 66666665544

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.05  E-value=0.059  Score=40.90  Aligned_cols=33  Identities=30%  Similarity=0.274  Sum_probs=29.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      .|+|+|||..|++++..++..|. ++++.++.++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCC
Confidence            58999999999999999999999 8999987653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.053  Score=38.74  Aligned_cols=30  Identities=27%  Similarity=0.424  Sum_probs=27.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      |+|+|+|+.|+.++..+..+|. +|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7888999999999999999999 89999764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.00  E-value=0.24  Score=32.23  Aligned_cols=61  Identities=21%  Similarity=0.195  Sum_probs=47.9

Q ss_pred             HHhcCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           62 WKEAEVEKGSSVAVL-GLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        62 ~~~~~~~~~~~vlI~-G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      ....++..-+.+++. ..-..-.++++++|.+|..++++...+++..+.++++|++.++++.
T Consensus        58 l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~  119 (132)
T d1lssa_          58 LEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE  119 (132)
T ss_dssp             HHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred             hhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence            366777777766655 3445557888999999988899988888889999999999998654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.00  E-value=0.14  Score=32.69  Aligned_cols=63  Identities=8%  Similarity=0.042  Sum_probs=39.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHc---CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQ---GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~---g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      .++++|+|+|.+|.=+++++..+   |. +|..+.+++.            ++..-+   ++..+.+++.....++++..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~~------------il~~~d---~~~~~~~~~~l~~~GI~v~~   81 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGDM------------ILRGFD---SELRKQLTEQLRANGINVRT   81 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSSS------------SSTTSC---HHHHHHHHHHHHHTTEEEEE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhccccc-ccceeccccc------------cccccc---chhhHHHHHHHhhCcEEEEc
Confidence            36899999999998877765544   67 8888866532            111122   44555555443334666666


Q ss_pred             Ec
Q 025336          147 EC  148 (254)
Q Consensus       147 d~  148 (254)
                      ++
T Consensus        82 ~~   83 (117)
T d1feca2          82 HE   83 (117)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=92.98  E-value=0.63  Score=30.84  Aligned_cols=38  Identities=21%  Similarity=0.229  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccH
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKK  107 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~  107 (254)
                      ..+|.|+|+|.+|..++..+...|. .+++.+|.++++.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            4589999999999998888887773 4899999887543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.89  E-value=0.065  Score=38.70  Aligned_cols=31  Identities=32%  Similarity=0.377  Sum_probs=27.8

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|..|+.++..+...|. +|.++++++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            7899999999999888888999 999998864

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.011  Score=40.66  Aligned_cols=98  Identities=17%  Similarity=0.127  Sum_probs=52.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      +|.|.|+ |-+|++.++.+... ++ ++++....+.....-+..|...-.....   -.....+.+.  -..+|+++|.+
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~~~g~d~~~~~~~~~~~---~~~~~~~~~~--~~~~DViIDFs   79 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTG---VTVQSSLDAV--KDDFDVFIDFT   79 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCS---CCEESCSTTT--TTSCSEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecccchhccchhhhhhccccCC---ceeeccHHHH--hcccceEEEec
Confidence            5788896 99999999988865 56 5555433222111111111000000000   0000000011  12789999998


Q ss_pred             CChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          150 GVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       150 g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      ... .....++.+... |.=+++|..+-
T Consensus        80 ~p~-~~~~~~~~a~~~-~~~~ViGTTG~  105 (162)
T d1diha1          80 RPE-GTLNHLAFCRQH-GKGMVIGTTGF  105 (162)
T ss_dssp             CHH-HHHHHHHHHHHT-TCEEEECCCCC
T ss_pred             cHH-HHHHHHHHHHhc-cceeEEecCCC
Confidence            876 556666666666 77788887654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.3  Score=33.23  Aligned_cols=96  Identities=18%  Similarity=0.183  Sum_probs=62.8

Q ss_pred             ccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC
Q 025336           48 SFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        48 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                      ..+|++....+..|....---.|.+|+|.|- ..+|.-+..++...|+ +|+.....                   +   
T Consensus        15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~-------------------t---   71 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRF-------------------T---   71 (166)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSS-------------------C---
T ss_pred             CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhc-cccccccc-------------------c---
Confidence            3556665555555543333347999999995 6899999999999999 77766222                   1   


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      .+..+.++      ..|+++-++|.+..+.  -..++++ ..++.+|..
T Consensus        72 ~~l~~~~~------~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~  111 (166)
T d1b0aa1          72 KNLRHHVE------NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN  111 (166)
T ss_dssp             SCHHHHHH------HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred             chhHHHHh------hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence            22333222      6788888888765433  2356676 777787764

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.83  E-value=0.079  Score=39.83  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      +|.+|+|.|.|.+|..+++++...|+ +|++++.
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGE   67 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEc
Confidence            57899999999999999999999999 8888853

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.81  E-value=0.068  Score=38.58  Aligned_cols=31  Identities=32%  Similarity=0.382  Sum_probs=27.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|+.|+.++..+.+.|. +|+++++.+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            7888999999999999999999 899997654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.80  E-value=0.062  Score=38.52  Aligned_cols=30  Identities=20%  Similarity=0.231  Sum_probs=27.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      ++|+|+|+.|+.++..+..+|. +|.+++..
T Consensus         8 lvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           8 LLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            7889999999999999999999 89999764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.80  E-value=0.067  Score=38.18  Aligned_cols=31  Identities=29%  Similarity=0.314  Sum_probs=27.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|+.|+.++..+.+.|. +|.++++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN   36 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecCC
Confidence            7888999999999999999999 899987653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.055  Score=40.99  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=28.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .|+|+|||..|+.++..+...|. +|.+++.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            37899999999999999888898 999998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.64  E-value=0.066  Score=37.00  Aligned_cols=31  Identities=23%  Similarity=0.253  Sum_probs=26.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      ++++|+|+|+|.+|.-++..++.+|. ++.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCC-ceEEE
Confidence            56899999999999999999999998 44333

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.51  E-value=0.078  Score=38.10  Aligned_cols=31  Identities=26%  Similarity=0.302  Sum_probs=27.3

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|+.|+.++..+..+|. +|++++..+
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~-kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            7889999999999999999999 899887653

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.51  E-value=0.47  Score=32.28  Aligned_cols=96  Identities=19%  Similarity=0.174  Sum_probs=57.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcC---CcccHHHHHhc----CC---c-------eE--------eCCCCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDK---NPWKKEKGEAF----GM---T-------DF--------INPDDEP  125 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~---~~~~~~~~~~~----g~---~-------~v--------~~~~~~~  125 (254)
                      +|.|.|-|-+|+++.+.+... .. +++++-.   +.+.+.++-++    |.   .       .+        +..++  
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~-~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~--   78 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDI-EVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD--   78 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS--
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCc-EEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCC--
Confidence            578999999999999988744 45 6666632   23455555332    21   0       11        11111  


Q ss_pred             CchHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          126 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       126 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      +.++.  +.+    .++|+|+||+|.-...+.+...+..+ .+-|++..+..
T Consensus        79 p~~i~--W~~----~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~k  123 (166)
T d2b4ro1          79 PSQIP--WGK----CQVDVVCESTGVFLTKELASSHLKGG-AKKVIMSAPPK  123 (166)
T ss_dssp             GGGCC--HHH----HTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCCS
T ss_pred             hHHcc--ccc----cCCCEEEEecccccchhhhhhhhccC-CCEEEEecccc
Confidence            11111  111    18999999999765666777778776 65566655443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.14  Score=35.92  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+.+|.|+|.|.+|...+++++..|+ +|+..++......       ......     .++.+.++      ..|++.-+
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~-------~~~~~~-----~~l~ell~------~sDii~i~  103 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLPL-------GNATQV-----QHLSDLLN------MSDVVSLH  103 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCCC-------TTCEEC-----SCHHHHHH------HCSEEEEC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccccchh-------hhhhhh-----hhHHHHHh------hccceeec
Confidence            57899999999999999999999999 9999977543221       011111     22333222      46788776


Q ss_pred             CCC-hh----HHHHHHHHcccCCcEEEEEccCC
Q 025336          149 TGV-PS----LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       149 ~g~-~~----~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ..- +.    .-...++.++++ ..+|-.+...
T Consensus       104 ~plt~~T~~li~~~~l~~mk~~-a~lIN~aRG~  135 (188)
T d1sc6a1         104 VPENPSTKNMMGAKEISLMKPG-SLLINASRGT  135 (188)
T ss_dssp             CCSSTTTTTCBCHHHHHHSCTT-EEEEECSCSS
T ss_pred             ccCCcchhhhccHHHHhhCCCC-CEEEEcCcHH
Confidence            652 21    124777888887 7777777654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.38  E-value=0.65  Score=30.68  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccH
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKK  107 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~  107 (254)
                      .+|.|+|+|.+|..++..+...+. .+++.++.++++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~   39 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV   39 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence            368899999999998888887775 4799998887554

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.54  Score=32.10  Aligned_cols=96  Identities=22%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             ccccchhhhhhHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCC
Q 025336           48 SFLSCGFTTGFGAAWKEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPN  126 (254)
Q Consensus        48 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~  126 (254)
                      +.+|++....+..|....---.|.+|+|+|. ..+|.-+..++...|+ .|.......                      
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t----------------------   73 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT----------------------   73 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC----------------------
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEeccc----------------------
Confidence            4566666666655543333347999999996 6899999999999999 887763321                      


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      .+..+.+      +..|+++-++|.+..+.  -..++++ -.++++|..
T Consensus        74 ~~l~~~~------~~aDivi~a~G~~~~i~--~~~vk~g-~iviDvgi~  113 (170)
T d1a4ia1          74 AHLDEEV------NKGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN  113 (170)
T ss_dssp             SSHHHHH------TTCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred             ccHHHHH------hhccchhhccccccccc--cccccCC-CeEeccCcc
Confidence            2222221      16778888888764332  2356776 777777754

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.18  E-value=1.3  Score=33.45  Aligned_cols=55  Identities=25%  Similarity=0.253  Sum_probs=39.2

Q ss_pred             HhcCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcC---CcccHHHHHhcCCceE
Q 025336           63 KEAEVEKGSSVAVL-GLGTVGLGAVDGARMQGAAKIIGIDK---NPWKKEKGEAFGMTDF  118 (254)
Q Consensus        63 ~~~~~~~~~~vlI~-G~g~~G~~~~~~a~~~g~~~v~~v~~---~~~~~~~~~~~g~~~v  118 (254)
                      ....++.+...+|. .+|+.|.+++..++.+|. +++++..   ++.+.+.++.+|++.+
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~-~~~iv~p~~~~~~k~~~i~~~Ga~vi  115 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGY-KLIITMPASMSTERRIILLAFGVELV  115 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhcc-ceEEeehhhhhhhhhhhhhccCcceE
Confidence            44556666555555 569999999999999999 5444432   4567778888998644

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.11  E-value=0.084  Score=37.69  Aligned_cols=30  Identities=33%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      |+|+|+|+.|+.++..+.+.|. +|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            7888999999999999999999 89998764

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=92.04  E-value=0.24  Score=34.07  Aligned_cols=100  Identities=25%  Similarity=0.355  Sum_probs=54.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC----CCeEEEEcC--CcccHHHHHhc----C---Cc-------eEeCCCCC---CCch
Q 025336           72 SVAVLGLGTVGLGAVDGARMQG----AAKIIGIDK--NPWKKEKGEAF----G---MT-------DFINPDDE---PNKS  128 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g----~~~v~~v~~--~~~~~~~~~~~----g---~~-------~v~~~~~~---~~~~  128 (254)
                      +|.|.|-|-+|+++.+.+...+    . +|+++-.  +.+.+.++-++    |   ..       .+++.+..   ...+
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~-~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDI-EIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCe-EEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            5789999999999998776432    3 5666532  22333333221    1   11       11111100   0011


Q ss_pred             HHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          129 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       129 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .. .+ .+ ...++|+|+||+|.-...+.+...+..+ .+-|++..+.
T Consensus        82 p~-~i-~W-~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP~  125 (173)
T d1obfo1          82 PA-QL-PW-GALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAPG  125 (173)
T ss_dssp             GG-GS-CT-TTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSCC
T ss_pred             HH-HC-cc-cccccceEEEecccccCHHHHHHHhccC-CcceEEecCC
Confidence            10 01 01 1238999999999755567777788777 6666666554

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.03  E-value=0.093  Score=36.74  Aligned_cols=32  Identities=16%  Similarity=0.085  Sum_probs=27.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      ..|+|+|+|+.|+.++..+.+.|. +++++++.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGW   37 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEee
Confidence            468999999999999999999999 78888654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.97  E-value=0.91  Score=29.07  Aligned_cols=93  Identities=12%  Similarity=0.052  Sum_probs=59.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  151 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  151 (254)
                      .++|.|.|.+|+.+++.++  +. .+++++.++++.+.++..|...+. .+    ..-.+.+++. +-..++.++-+...
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~-Gd----~~~~~~L~~a-~i~~A~~vi~~~~~   72 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVH-GD----PTRVSDLEKA-NVRGARAVIVNLES   72 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEE-SC----TTSHHHHHHT-TCTTCSEEEECCSS
T ss_pred             EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCccccc-cc----cCCHHHHHHh-hhhcCcEEEEeccc
Confidence            5788899999998877664  44 677888999988888888865443 22    1222344443 33378888887776


Q ss_pred             hhH---HHHHHHHcccCCcEEEEEcc
Q 025336          152 PSL---LSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       152 ~~~---~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...   +-...+.+.|. .+++....
T Consensus        73 d~~n~~~~~~~r~~~~~-~~iia~~~   97 (129)
T d2fy8a1          73 DSETIHCILGIRKIDES-VRIIAEAE   97 (129)
T ss_dssp             HHHHHHHHHHHHHHCSS-SCEEEECS
T ss_pred             hhhhHHHHHHHHHHCCC-ceEEEEEc
Confidence            422   22344456666 66665543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=91.95  E-value=0.078  Score=40.67  Aligned_cols=31  Identities=32%  Similarity=0.358  Sum_probs=25.6

Q ss_pred             EEEEcCCHHHHHHHHHHH-----HcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGAR-----MQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~-----~~g~~~v~~v~~~~  104 (254)
                      |+|.|+|++|++++.++.     ..|. +|+++++.+
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            889999999998877763     5789 899998754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.1  Score=37.23  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=27.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      ++|+|+|+.|+.++..+.++|. +|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6788999999999999999999 89998764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=91.90  E-value=0.066  Score=39.48  Aligned_cols=101  Identities=13%  Similarity=0.055  Sum_probs=61.0

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCC-ceEeCCCCCCCchHHHHHHHhh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGM-TDFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ....+.+..+||=+|+|. |..+..+++...-.++++++. ++..+.+++    .|. +.+ ....   .++.    +..
T Consensus        74 ~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv-~~~~---~D~~----~~~  143 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRV-DVVE---GDFF----EPL  143 (253)
T ss_dssp             HHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTE-EEEE---CCTT----SCC
T ss_pred             hhcCCccCCEEEEeCCCC-CHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccch-hhcc---ccch----hhc
Confidence            455667778999998764 888889998774338888876 444555443    332 111 1110   1110    111


Q ss_pred             CCCCccEEEEcCC-----Ch---hHHHHHHHHcccCCcEEEEEccC
Q 025336          138 HGMGVDYCFECTG-----VP---SLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       138 ~~~~~d~v~d~~g-----~~---~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      . .++|+|+-..-     .+   ..+..+.+.|+|+ |++++....
T Consensus       144 ~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG-G~l~i~e~~  187 (253)
T d1tw3a2         144 P-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHERD  187 (253)
T ss_dssp             S-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred             c-cchhheeeccccccCCchhhHHHHHHHHHhcCCC-cEEEEEecc
Confidence            2 37899884322     12   2467888899999 999887543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=91.81  E-value=0.1  Score=38.53  Aligned_cols=31  Identities=13%  Similarity=0.142  Sum_probs=27.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|.+|+.++-.+...|. +|+++++.+
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8899999999998888888898 999998754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.79  E-value=0.61  Score=30.76  Aligned_cols=35  Identities=29%  Similarity=0.334  Sum_probs=26.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCccc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWK  106 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~  106 (254)
                      +|.|+|+|.+|..++..+...+. .+++.+|.++++
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            68889999999998888887774 479999887765

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.79  E-value=0.44  Score=36.75  Aligned_cols=74  Identities=14%  Similarity=0.084  Sum_probs=42.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc--ccHHHHHhcC-C-c-e--EeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP--WKKEKGEAFG-M-T-D--FINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~--~~~~~~~~~g-~-~-~--v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      +|||+|+ |-+|..++..+...|...|++++...  .+.+..+.+. . . .  ..|-.+   .+....+.+   ...+|
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~l~~~~~---~~~~d   75 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD---SAEITRIFE---QYQPD   75 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC---HHHHHHHHH---HHCCS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCC---HHHHHHHHH---hCCCC
Confidence            6999986 99999999999888985566665422  1222222221 1 1 1  123333   332222222   12789


Q ss_pred             EEEEcCCC
Q 025336          144 YCFECTGV  151 (254)
Q Consensus       144 ~v~d~~g~  151 (254)
                      +||++++.
T Consensus        76 ~VihlAa~   83 (361)
T d1kewa_          76 AVMHLAAE   83 (361)
T ss_dssp             EEEECCSC
T ss_pred             EEEECccc
Confidence            99998763

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.72  E-value=1  Score=30.75  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC--cccHHHHHhc----C---Cc-------e-EeCCCC------CCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAA--KIIGIDKN--PWKKEKGEAF----G---MT-------D-FINPDD------EPN  126 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~--~v~~v~~~--~~~~~~~~~~----g---~~-------~-v~~~~~------~~~  126 (254)
                      +|.|.|-|-+|+++.+.+....-.  +++++-..  .+.+.++-++    |   .+       . +++...      .++
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~p   81 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNP   81 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSCG
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCCh
Confidence            578999999999999977644321  55555222  2233333221    2   11       1 111110      011


Q ss_pred             chHHHHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCC
Q 025336          127 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       127 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .++  .+.+    .++|+|+||+|.-...+.+...+..+ -+-|++..+.
T Consensus        82 ~~i--~W~~----~gvDiViEcTG~f~~~~~~~~hl~~G-akkViiSAP~  124 (172)
T d1rm4a1          82 VNL--PWGD----MGIDLVIEGTGVFVDRDGAGKHLQAG-AKKVLITAPG  124 (172)
T ss_dssp             GGS--CHHH----HTCCEEEECSSSCCBHHHHHHHHHTT-CSCEEESSCC
T ss_pred             HHC--Chhh----cCCCEEEecCceEccHHHHHHHHhcC-CceEEeeccc
Confidence            111  0111    18999999999754567777778776 6445555544

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.68  E-value=0.14  Score=36.03  Aligned_cols=39  Identities=28%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA  112 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~  112 (254)
                      +|.|+|.|-+|+..+.++ ..|. +|+++|.++++.+.++.
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            578899999999877655 5699 99999999999888764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.68  E-value=0.22  Score=33.42  Aligned_cols=47  Identities=11%  Similarity=0.058  Sum_probs=38.1

Q ss_pred             hhhhHHHHHhcCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVL--GLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~--G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .|....|  ..+..+++.++|+  |+|-+|+-+++.+..+|+ +|..+.+.+
T Consensus        26 ~t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          26 LTPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             ECHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             ECHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            3566655  4566778888887  779999999999999999 999997764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.68  E-value=0.24  Score=33.20  Aligned_cols=39  Identities=10%  Similarity=0.077  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccH
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKK  107 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~  107 (254)
                      |..+|.|+|+|.+|..++.++...+..+++..|.++++.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            456899999999999988888888888999998877653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.1  Score=39.88  Aligned_cols=31  Identities=23%  Similarity=0.376  Sum_probs=27.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|..|+.++..++..|. +|++.++++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            7899999999999999999999 899997654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.54  E-value=0.1  Score=39.23  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025336           69 KGSSVAVLGL-G--TVGLGAVDGARMQGAAKIIGIDKNPW  105 (254)
Q Consensus        69 ~~~~vlI~G~-g--~~G~~~~~~a~~~g~~~v~~v~~~~~  105 (254)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+..+++++
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchh
Confidence            5889999986 4  799999999999999 8988877643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.48  E-value=0.099  Score=37.71  Aligned_cols=30  Identities=27%  Similarity=0.359  Sum_probs=27.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      |+|+|+|+.|+.++..+.+.|. +|.+++..
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCC-CEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            7889999999999999999999 89999754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.46  E-value=0.71  Score=34.92  Aligned_cols=102  Identities=22%  Similarity=0.293  Sum_probs=60.7

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHH----hcCCceEeCCCCCCCchHHHHHHHhhC
Q 025336           64 EAEVEKGSSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGE----AFGMTDFINPDDEPNKSISELVKGITH  138 (254)
Q Consensus        64 ~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~i~~~~~  138 (254)
                      ...+++|++||=.-+++ |.=+++++..++ -..+++.+.++.|...++    ++|...++....   +...  + ... 
T Consensus       111 ~l~~~~g~~vlD~CAap-GgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~---d~~~--~-~~~-  182 (313)
T d1ixka_         111 ALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS---SSLH--I-GEL-  182 (313)
T ss_dssp             HHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS---CGGG--G-GGG-
T ss_pred             cccCCccceeeecccch-hhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccc---cccc--c-ccc-
Confidence            45678999988763332 222334444333 236999999998887764    467655443332   1110  0 111 


Q ss_pred             CCCccEEE-E--cCCCh-------------------------hHHHHHHHHcccCCcEEEEEcc
Q 025336          139 GMGVDYCF-E--CTGVP-------------------------SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       139 ~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ...||.|+ |  |+|..                         ..+..+++.++++ |++|....
T Consensus       183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g-G~lVYsTC  245 (313)
T d1ixka_         183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYSTC  245 (313)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC-cEEEEeec
Confidence            23789887 5  66641                         1567888899998 98766543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.43  E-value=0.13  Score=36.89  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=26.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHH--cCCCeEEEEcCCcc
Q 025336           72 SVAVLGLGTVGLGAVDGARM--QGAAKIIGIDKNPW  105 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~--~g~~~v~~v~~~~~  105 (254)
                      +|+|+|+|+.|+.++..++.  .|+ +|++.+..+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence            79999999999999886654  467 8998877653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.39  E-value=0.12  Score=39.01  Aligned_cols=31  Identities=45%  Similarity=0.641  Sum_probs=27.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|..|+.++.-+...|. +|+++++.+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            8999999999999988889999 899997754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.31  E-value=0.34  Score=34.66  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=36.5

Q ss_pred             hHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           58 FGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        58 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      +.++....+--.+.+|++.|+|+.|...+++....+.++++.+|+.
T Consensus        14 l~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          14 LNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            3444434444467899999999999999999998999899999875

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=91.28  E-value=0.45  Score=33.98  Aligned_cols=92  Identities=18%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             EEEEEcCCHHHH-HHHHHHH-HcCCCeEEEE-cCCcccHHH-HHhcCCc--eEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           72 SVAVLGLGTVGL-GAVDGAR-MQGAAKIIGI-DKNPWKKEK-GEAFGMT--DFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        72 ~vlI~G~g~~G~-~~~~~a~-~~g~~~v~~v-~~~~~~~~~-~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      +|.|+|+|.+|. ..+...+ .-+. +++++ ++++++.+. +++++..  .+..+++         +.++.....+|+|
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d---------~~ell~~~~iD~V  104 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN---------FDKIAKDPKIDAV  104 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS---------GGGGGGCTTCCEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc---------hhhhcccccceee
Confidence            678899999986 3444444 3366 66644 666666554 4566642  2333332         2233333489999


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      +-|+......+.+.+++..  |+=+.+.-+
T Consensus       105 ~I~tp~~~H~~~~~~al~~--gk~v~~EKP  132 (221)
T d1h6da1         105 YIILPNSLHAEFAIRAFKA--GKHVMCEKP  132 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHT--TCEEEECSS
T ss_pred             eeccchhhhhhHHHHhhhc--chhhhcCCC
Confidence            9999887677888888876  455555543

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.03  E-value=0.48  Score=34.38  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=28.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGAR-MQGAAKIIGIDKN  103 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~-~~g~~~v~~v~~~  103 (254)
                      -+|.+|+|.|.|.+|..+++++. ..|+ +|+++..+
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~-kvv~vsD~   65 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVSDS   65 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEECS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCc-ceeecccc
Confidence            36899999999999999999775 5788 88877443

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.94  E-value=0.96  Score=35.20  Aligned_cols=54  Identities=24%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---CcccHHHHHhcCCceEeC
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK---NPWKKEKGEAFGMTDFIN  120 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~---~~~~~~~~~~~g~~~v~~  120 (254)
                      +++++.+|.-..+|+.|++++..++.+|. +++++..   ++++.+.++.+|++.+..
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGi-k~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGY-RARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTC-EEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCC-CEEEEeeccccccccccccccCcceeec
Confidence            46677654444569999999999999999 5555533   446777788999876543

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=90.77  E-value=0.39  Score=32.88  Aligned_cols=100  Identities=17%  Similarity=0.293  Sum_probs=54.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHH---HHHhc----C---Cc-------eEeCCCCC---CCchHH
Q 025336           72 SVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKE---KGEAF----G---MT-------DFINPDDE---PNKSIS  130 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~---~~~~~----g---~~-------~v~~~~~~---~~~~~~  130 (254)
                      +|.|.|-|-+|+++.+.+... .. +++++- +....+   ++-++    |   ..       .+++.+..   ...+..
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~-~ivaIN-d~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~   80 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDI-EVVAVN-DLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE   80 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTE-EEEEEE-CSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEc-CCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHH
Confidence            578999999999999877644 35 666663 223333   33221    1   00       01111000   001111


Q ss_pred             HHHHHhhCCCCccEEEEcCCChhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          131 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       131 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      + +. +. ..++|+|+||+|.-...+.+...+..+ -+-|++..+..
T Consensus        81 ~-i~-W~-~~~vDiViEcTG~f~t~~~~~~hl~~g-akkViiSap~~  123 (171)
T d3cmco1          81 N-LA-WG-EIGVDIVVESTGRFTKREDAAKHLEAG-AKKVIISAPAK  123 (171)
T ss_dssp             G-CC-TG-GGTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCCB
T ss_pred             H-cc-cc-ccCCcEEEEecCccCCHHHHHHHHhCC-CceEEEecccc
Confidence            1 00 11 127999999999765667777778776 55555555443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.72  E-value=0.1  Score=37.60  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=27.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-------CCeEEEEcCCcc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQG-------AAKIIGIDKNPW  105 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g-------~~~v~~v~~~~~  105 (254)
                      -+|+|+|+|+.|++++..+...|       + +|.+.++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCCC
Confidence            37999999999999998887776       4 6888877653

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=90.58  E-value=0.24  Score=36.62  Aligned_cols=62  Identities=18%  Similarity=0.251  Sum_probs=38.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  150 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  150 (254)
                      +|||+|+ |-+|..++..+...|.  +++++......          ..|..+  ...+.+.+++.    ++|+||++++
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~--~v~~~~~~~~~----------~~Dl~~--~~~~~~~i~~~----~~D~Vih~Aa   63 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN--LIALDVHSKEF----------CGDFSN--PKGVAETVRKL----RPDVIVNAAA   63 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE--EEEECTTCSSS----------CCCTTC--HHHHHHHHHHH----CCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC--EEEEECCCccc----------cCcCCC--HHHHHHHHHHc----CCCEEEEecc
Confidence            5999987 9999999887777665  55554443221          112222  12333334332    7899999886


Q ss_pred             C
Q 025336          151 V  151 (254)
Q Consensus       151 ~  151 (254)
                      .
T Consensus        64 ~   64 (298)
T d1n2sa_          64 H   64 (298)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=90.56  E-value=1.1  Score=30.57  Aligned_cols=74  Identities=11%  Similarity=0.230  Sum_probs=42.7

Q ss_pred             CCCEEEEEcCCHHHHH---HHHHHHHcC--CCeEEEEcCCcccHHHHH--------hcCCceEeCCCCCCCchHHHHHHH
Q 025336           69 KGSSVAVLGLGTVGLG---AVDGARMQG--AAKIIGIDKNPWKKEKGE--------AFGMTDFINPDDEPNKSISELVKG  135 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~---~~~~a~~~g--~~~v~~v~~~~~~~~~~~--------~~g~~~v~~~~~~~~~~~~~~i~~  135 (254)
                      |+-+|.|+|+|++|..   ...+++..+  ..+++.+|.++++.+...        .++...-+...    .+..+.+  
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~----td~~eaL--   74 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT----MNLDDVI--   74 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE----SCHHHHH--
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe----CChhhcc--
Confidence            4567899999988854   333444222  238999999988765421        23333222111    2233333  


Q ss_pred             hhCCCCccEEEEcCCCh
Q 025336          136 ITHGMGVDYCFECTGVP  152 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~~  152 (254)
                          .+.|+|+.+++..
T Consensus        75 ----~dad~Vv~~~~~g   87 (171)
T d1obba1          75 ----IDADFVINTAMVG   87 (171)
T ss_dssp             ----TTCSEEEECCCTT
T ss_pred             ----cCCCeEeeecccc
Confidence                2789999887643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.55  E-value=0.16  Score=37.56  Aligned_cols=31  Identities=32%  Similarity=0.419  Sum_probs=26.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|.+|+.++..+...|. +|+++++.+
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            7899999999998888888899 899997753

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.52  E-value=2.5  Score=31.33  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=38.6

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC--CcccHHHHHhcCCce
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK--NPWKKEKGEAFGMTD  117 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~--~~~~~~~~~~~g~~~  117 (254)
                      ....++++..|...++|+.|.+++..++.+|.+-++.+..  ++.+.+.++.+|++.
T Consensus        54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v  110 (302)
T d1fcja_          54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANL  110 (302)
T ss_dssp             HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             HcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccce
Confidence            4556677776666677999999999999999843333322  345666777777654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.38  E-value=0.3  Score=34.40  Aligned_cols=68  Identities=21%  Similarity=0.328  Sum_probs=40.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+|||+|+ |-+|..+++.+...|. .+|++..+++...     . . . +....   .++.+....+ . ..+|.|+.|
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-----~-~-~-~~~~~---~d~~~~~~~~-~-~~~d~vi~~   69 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-----H-P-R-LDNPV---GPLAELLPQL-D-GSIDTAFCC   69 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-----C-T-T-EECCB---SCHHHHGGGC-C-SCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-----c-c-c-ccccc---cchhhhhhcc-c-cchheeeee
Confidence            68999997 9999999998887885 2556554442110     0 0 1 11111   2333322222 2 268999999


Q ss_pred             CCC
Q 025336          149 TGV  151 (254)
Q Consensus       149 ~g~  151 (254)
                      +|.
T Consensus        70 ~g~   72 (212)
T d2a35a1          70 LGT   72 (212)
T ss_dssp             CCC
T ss_pred             eee
Confidence            876

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=1.1  Score=33.84  Aligned_cols=51  Identities=18%  Similarity=0.182  Sum_probs=36.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---CcccHHHHHhcCCceEe
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK---NPWKKEKGEAFGMTDFI  119 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~---~~~~~~~~~~~g~~~v~  119 (254)
                      .+...|+...+|+.|.+++..++..|. +++++..   +.++.+.++.+|++.++
T Consensus        73 ~~~~~vv~assGN~g~a~A~~a~~~g~-~~~i~~p~~~~~~k~~~l~~~Ga~vi~  126 (331)
T d1tdja1          73 QKAHGVITASAGNHAQGVAFSSARLGV-KALIVMPTATADIKVDAVRGFGGEVLL  126 (331)
T ss_dssp             SCSSSCEEEECSSSHHHHHHHHHHTTC-CEEEECCSSCCHHHHHHHHHHSCEEEC
T ss_pred             CCCCeeeecccchhHHHHHHhhccccc-cceeeccccchhHHHHHHHhcCCEEEE
Confidence            344555555679999999999999999 4544433   34577778889987544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=90.28  E-value=0.27  Score=34.54  Aligned_cols=90  Identities=23%  Similarity=0.217  Sum_probs=58.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           67 VEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        67 ~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +.++++||=+|+|. |..+..+     . ++++++.+++..+.+++.+...+. ...   .++     .. ....||+|+
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~~~~-~d~---~~l-----~~-~~~~fD~I~   96 (208)
T d1vlma_          34 LLPEGRGVEIGVGT-GRFAVPL-----K-IKIGVEPSERMAEIARKRGVFVLK-GTA---ENL-----PL-KDESFDFAL   96 (208)
T ss_dssp             HCCSSCEEEETCTT-STTHHHH-----T-CCEEEESCHHHHHHHHHTTCEEEE-CBT---TBC-----CS-CTTCEEEEE
T ss_pred             hCCCCeEEEECCCC-ccccccc-----c-eEEEEeCChhhccccccccccccc-ccc---ccc-----cc-ccccccccc
Confidence            45667899998763 5544443     2 578999999999999887654322 111   111     01 223799998


Q ss_pred             EcCC-----C-hhHHHHHHHHcccCCcEEEEEcc
Q 025336          147 ECTG-----V-PSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       147 d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ..-.     . ...+..+.+.|+|+ |+++....
T Consensus        97 ~~~~l~h~~d~~~~l~~~~~~L~pg-G~l~i~~~  129 (208)
T d1vlma_          97 MVTTICFVDDPERALKEAYRILKKG-GYLIVGIV  129 (208)
T ss_dssp             EESCGGGSSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccccccccccchhhhhhcCCCC-ceEEEEec
Confidence            6432     2 23578889999999 98877653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.28  E-value=0.16  Score=33.92  Aligned_cols=90  Identities=16%  Similarity=0.083  Sum_probs=49.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCC--CeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGA--AKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~--~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +|.|+|+ |-+|+-.++++.....  .++..+..+...-......+.+..+       .+..    . ..-.+.|++|-+
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~-------~~~~----~-~~~~~~d~vf~a   71 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV-------GDVD----S-FDFSSVGLAFFA   71 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEEC-------EEGG----G-CCGGGCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchh-------ccch----h-hhhccceEEEec
Confidence            6899998 9999999999874432  2555543322111111111111111       1110    0 112378999999


Q ss_pred             CCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          149 TGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       149 ~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .+...+.+..-.....+ .++++.+.
T Consensus        72 ~p~~~s~~~~~~~~~~g-~~VID~Ss   96 (144)
T d2hjsa1          72 AAAEVSRAHAERARAAG-CSVIDLSG   96 (144)
T ss_dssp             SCHHHHHHHHHHHHHTT-CEEEETTC
T ss_pred             CCcchhhhhccccccCC-ceEEeech
Confidence            98875555555556665 67666554

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=90.24  E-value=0.44  Score=35.72  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=26.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      .+|||+|+ |-+|..+++.+...|. .+++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~   34 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   34 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecC
Confidence            47999987 9999999999999998 7776643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.024  Score=41.88  Aligned_cols=45  Identities=20%  Similarity=0.093  Sum_probs=31.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA  112 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~  112 (254)
                      ...++.+||=+|+|. |.....+++. ++.+|++++.++...+.+++
T Consensus        48 ~~~~g~~vLDlGcG~-G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          48 GGLQGDTLIDIGSGP-TIYQVLAACD-SFQDITLSDFTDRNREELEK   92 (257)
T ss_dssp             TSCCEEEEEESSCTT-CCGGGTTGGG-TEEEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCC-CHhHHHHhcc-ccCcEEEecCCHHHHHHHHH
Confidence            345677888888764 5444444444 44489999999998888865

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.20  E-value=0.19  Score=37.69  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=26.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      .|+|+|+|.+|++++..+...|.++|++++++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            489999999999877666667864698987753

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.16  E-value=1.2  Score=30.85  Aligned_cols=107  Identities=21%  Similarity=0.221  Sum_probs=64.0

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHh----cCCc-eEeCCCCCCCchHHHHHHHh
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEA----FGMT-DFINPDDEPNKSISELVKGI  136 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~  136 (254)
                      ....+++++.++=.+.|. |-.+-.+++.. +. +|+++|++++..+.+++    ++.. ..+..+-   .++...+...
T Consensus        17 ~~l~~~~~~~~lD~t~G~-Gghs~~il~~~~~~-~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f---~~~~~~~~~~   91 (192)
T d1m6ya2          17 EFLKPEDEKIILDCTVGE-GGHSRAILEHCPGC-RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLKTL   91 (192)
T ss_dssp             HHHCCCTTCEEEETTCTT-SHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHHHT
T ss_pred             HhhCCCCCCEEEEecCCC-cHHHHHHHhcCCCC-eEEEeechHHHHHHHHHhhccccccccchhHHH---hhHHHHHHHc
Confidence            445677888664333343 33344555544 55 99999999999988865    3322 2333332   4454445554


Q ss_pred             hCCCCccEEEEcCCC-h--------------hHHHHHHHHcccCCcEEEEEccCC
Q 025336          137 THGMGVDYCFECTGV-P--------------SLLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       137 ~~~~~~d~v~d~~g~-~--------------~~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      .. ..+|.|+=-.|- .              ..+..+.+.+.++ |+++++....
T Consensus        92 ~~-~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~f~s  144 (192)
T d1m6ya2          92 GI-EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVISFHS  144 (192)
T ss_dssp             TC-SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEESSH
T ss_pred             CC-CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeecccc
Confidence            33 389888632332 1              2466777788998 9988776543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.12  E-value=0.24  Score=34.34  Aligned_cols=93  Identities=17%  Similarity=0.108  Sum_probs=56.2

Q ss_pred             CCCCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHHHHhh
Q 025336           67 VEKGSSVAVL--GLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELVKGIT  137 (254)
Q Consensus        67 ~~~~~~vlI~--G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~  137 (254)
                      ..+|.+||=+  |.|++|+-    |...|+.+|+.++.+++..+.+++    ++..   .++.      .+..+.+.++.
T Consensus        39 ~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~------~D~~~~l~~~~  108 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK------MDANRALEQFY  108 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE------SCHHHHHHHHH
T ss_pred             hcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccc------ccchhhhhhhc
Confidence            3468888877  44777763    334788889999999988888764    3432   2332      44555555432


Q ss_pred             -CCCCccEEEEcCC----C-hhHHHHHHH--HcccCCcEEE
Q 025336          138 -HGMGVDYCFECTG----V-PSLLSEALE--TTKVGKGKVI  170 (254)
Q Consensus       138 -~~~~~d~v~d~~g----~-~~~~~~~~~--~l~~~~G~~v  170 (254)
                       .+..||+||-.-.    . ...++.+..  .+.++ |.++
T Consensus       109 ~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~-giIi  148 (182)
T d2fhpa1         109 EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNE-AVIV  148 (182)
T ss_dssp             HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEE-EEEE
T ss_pred             ccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCC-EEEE
Confidence             3448999983221    1 223444443  36777 7655

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.03  E-value=0.16  Score=38.50  Aligned_cols=31  Identities=42%  Similarity=0.669  Sum_probs=27.4

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|..|+.++--+...|. +|+++++.+
T Consensus        22 VvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~   52 (317)
T d1qo8a2          22 VLVVGAGSAGFNASLAAKKAGA-NVILVDKAP   52 (317)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8899999999999888888899 899997654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.00  E-value=0.2  Score=38.22  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=26.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNP  104 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~  104 (254)
                      .+|+|+|+|+.|++++..++..|. .+|++.++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            579999999999988866654442 2899987774

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.22  Score=38.07  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=28.3

Q ss_pred             EE-EEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SV-AVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~v-lI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      +| ||+|+ |-+|..++..+...|+ +|+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            57 99987 9999999999998999 999998854

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=89.61  E-value=0.18  Score=38.21  Aligned_cols=31  Identities=45%  Similarity=0.716  Sum_probs=27.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|..|+.++..+...|. +|+++++.+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8999999999999888888999 899998754

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=89.52  E-value=0.19  Score=38.31  Aligned_cols=31  Identities=29%  Similarity=0.383  Sum_probs=27.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|+.|+.++-.|...|. +|++++..+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            8899999999999999999999 899997654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.51  E-value=1.1  Score=30.29  Aligned_cols=72  Identities=15%  Similarity=0.115  Sum_probs=41.6

Q ss_pred             CCCEEEEEcCCHHHH--HHHHHHHH-cC--CCeEEEEcCCcccHHHHH--------hcCCc-eEeCCCCCCCchHHHHHH
Q 025336           69 KGSSVAVLGLGTVGL--GAVDGARM-QG--AAKIIGIDKNPWKKEKGE--------AFGMT-DFINPDDEPNKSISELVK  134 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~--~~~~~a~~-~g--~~~v~~v~~~~~~~~~~~--------~~g~~-~v~~~~~~~~~~~~~~i~  134 (254)
                      +.-+|.|+|+|++|.  +...+++. ..  ..+++.+|.++++.+...        ..+.. .+...     .+..+.+ 
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal-   75 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAF-   75 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHH-
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhcc-
Confidence            344688999876653  23344432 22  138999999998876321        13333 22222     2233332 


Q ss_pred             HhhCCCCccEEEEcCCC
Q 025336          135 GITHGMGVDYCFECTGV  151 (254)
Q Consensus       135 ~~~~~~~~d~v~d~~g~  151 (254)
                           .+.|+|+.++|.
T Consensus        76 -----~~AD~Vvitag~   87 (167)
T d1u8xx1          76 -----TDVDFVMAHIRV   87 (167)
T ss_dssp             -----SSCSEEEECCCT
T ss_pred             -----CCCCEEEECCCc
Confidence                 289999999985

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.50  E-value=1.4  Score=27.88  Aligned_cols=91  Identities=23%  Similarity=0.236  Sum_probs=59.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      +.++.+|+|.|- |..|+.-.+..+.+|. ++++-....+.-...  .| -.|+|       ...+.+++ +   ++|.-
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m~~yGT-~iVaGVtPgkgG~~~--~g-iPVf~-------tV~eAv~~-~---~~d~S   68 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQMLTYGT-KIVAGVTPGKGGMEV--LG-VPVYD-------TVKEAVAH-H---EVDAS   68 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECTTCTTCEE--TT-EEEES-------SHHHHHHH-S---CCSEE
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCC-ceEeeeecCCCCcEE--EC-CchHh-------hHHHHHHh-c---CCeEE
Confidence            356779999995 9999999999999999 777765543321111  11 22443       24444443 2   56777


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEEc
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      +-.+..+.....++..+..+ -+++.+=
T Consensus        69 vIfVPp~~a~dAi~EAi~ag-I~liv~I   95 (121)
T d1oi7a1          69 IIFVPAPAAADAALEAAHAG-IPLIVLI   95 (121)
T ss_dssp             EECCCHHHHHHHHHHHHHTT-CSEEEEC
T ss_pred             EEeeCHHHHHHHHHHHHhCC-CcEEEEe
Confidence            76777666667777788776 6665553

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.26  E-value=0.23  Score=36.38  Aligned_cols=30  Identities=30%  Similarity=0.450  Sum_probs=27.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      ++|+|+|+.|+.++..+.+.|. +|..+++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            6788999999999999999999 89999764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=89.15  E-value=0.42  Score=35.40  Aligned_cols=73  Identities=16%  Similarity=0.166  Sum_probs=41.9

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCc--ccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEcC
Q 025336           73 VAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNP--WKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  149 (254)
Q Consensus        73 vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  149 (254)
                      |||+|+ |-+|..++..+...|..+|++++.-.  .+.............+.     .+....+........++.++-+.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~a   76 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK-----EDFLIQIMAGEEFGDVEAIFHEG   76 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH-----HHHHHHHHTTCCCSSCCEEEECC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccc-----hHHHHHHhhhhcccchhhhhhhc
Confidence            799986 99999999888888975788875322  22323333332222221     23333333333334677777654


Q ss_pred             C
Q 025336          150 G  150 (254)
Q Consensus       150 g  150 (254)
                      +
T Consensus        77 a   77 (307)
T d1eq2a_          77 A   77 (307)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=0.22  Score=36.74  Aligned_cols=45  Identities=13%  Similarity=0.008  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh
Q 025336           66 EVEKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA  112 (254)
Q Consensus        66 ~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~  112 (254)
                      +..+|.++|=+|+|+ |...+..+...+. +|++++-++...+.+++
T Consensus        51 g~~~g~~vLDiGcG~-g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          51 GEVSGRTLIDIGSGP-TVYQLLSACSHFE-DITMTDFLEVNRQELGR   95 (263)
T ss_dssp             SCSCCSEEEEETCTT-CCGGGTTGGGGCS-EEEEECSCHHHHHHHHH
T ss_pred             CCCCCcEEEEeccCC-CHHHHHHhcccCC-eEEEEeCCHHHHHHHHH
Confidence            445688999999875 4433333333344 89999999998888875

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.11  E-value=0.24  Score=38.75  Aligned_cols=31  Identities=23%  Similarity=0.467  Sum_probs=24.6

Q ss_pred             EEEEcCCHHHHHHHHHHHH------cCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARM------QGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~------~g~~~v~~v~~~~  104 (254)
                      |+|+|+|+.|++++..+.+      .|. +|+++++..
T Consensus        35 ViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~   71 (380)
T d2gmha1          35 VVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   71 (380)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             EEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence            8899999999887654443      789 999998764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=88.64  E-value=2.3  Score=28.43  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccH
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKK  107 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~  107 (254)
                      +..+|.|+|+|.+|..++..+...|. .+++.+|.++++.
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            45689999999999999988888875 5799998876544

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=88.48  E-value=0.48  Score=31.27  Aligned_cols=38  Identities=16%  Similarity=0.202  Sum_probs=30.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHH
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKE  108 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~  108 (254)
                      .+|.|+|+|.+|..++-++...+..+++.++.++++.+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~   39 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQ   39 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccch
Confidence            36889999999998887777777668999988776533

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.42  E-value=0.81  Score=35.54  Aligned_cols=98  Identities=17%  Similarity=0.070  Sum_probs=63.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCceE--------------eCCCCCCCchHHH
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTDF--------------INPDDEPNKSISE  131 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~v--------------~~~~~~~~~~~~~  131 (254)
                      +.+|| -+.+++|.-.+++++..|..+|++.|.+++-.+.+++    .+....              +....   .+.-.
T Consensus        46 ~~~vL-D~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~---~Da~~  121 (375)
T d2dula1          46 PKIVL-DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINH---DDANR  121 (375)
T ss_dssp             CSEEE-ESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEE---SCHHH
T ss_pred             CCEEE-EcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeeh---hhhhh
Confidence            44443 3445668889999999998899999999998888865    221110              10111   22222


Q ss_pred             HHHHhhCCCCccEEE-EcCCCh-hHHHHHHHHcccCCcEEEEEcc
Q 025336          132 LVKGITHGMGVDYCF-ECTGVP-SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       132 ~i~~~~~~~~~d~v~-d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .+.+  .+..||+|. |.-|.+ +.++.++++++.+ |-+.+...
T Consensus       122 ~~~~--~~~~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vTaT  163 (375)
T d2dula1         122 LMAE--RHRYFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVTAT  163 (375)
T ss_dssp             HHHH--STTCEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             hhHh--hcCcCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEEec
Confidence            2222  344799775 888863 4688999999988 87766543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.40  E-value=0.32  Score=37.11  Aligned_cols=31  Identities=19%  Similarity=0.409  Sum_probs=28.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      .+|||+|+ |-+|..++..+...|. +|+++++
T Consensus        17 k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          17 KVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            57999987 9999999999999999 9999976

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.42  Score=31.25  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=40.4

Q ss_pred             CCCCEEEEEcCCHHHHHHH-HH---HHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCcc
Q 025336           68 EKGSSVAVLGLGTVGLGAV-DG---ARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVD  143 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~-~~---a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  143 (254)
                      +++++++|+|+|.+|.=++ .+   ++..|. +|+.+.+.+.-+.        ..+   +   ++..+.+.+.....|+.
T Consensus        35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~~l~--------~~~---~---~~~~~~~~~~l~~~GV~   99 (137)
T d1m6ia2          35 REVKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKGNMG--------KIL---P---EYLSNWTMEKVRREGVK   99 (137)
T ss_dssp             HHCSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSSTTT--------TTS---C---HHHHHHHHHHHHTTTCE
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccccCCc--------ccC---C---HHHHHHHHHHHHhCCcE
Confidence            4568999999999885433 23   356788 8998866543221        011   1   44555555544445777


Q ss_pred             EEEEcC
Q 025336          144 YCFECT  149 (254)
Q Consensus       144 ~v~d~~  149 (254)
                      +.+++.
T Consensus       100 ~~~~~~  105 (137)
T d1m6ia2         100 VMPNAI  105 (137)
T ss_dssp             EECSCC
T ss_pred             EEeCCE
Confidence            776543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.31  E-value=0.26  Score=36.53  Aligned_cols=31  Identities=26%  Similarity=0.399  Sum_probs=26.0

Q ss_pred             EEEEcCCHHHHHHHH-HHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVD-GARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~-~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|+.|+.++. +++..|. +|.++++.+
T Consensus        36 ViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          36 VVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             EEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            899999999998765 5666799 999998764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.12  E-value=2.3  Score=27.69  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHH
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKE  108 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~  108 (254)
                      +|.|+|+|.+|..++..+...+. .++..+|.++++.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~   39 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAE   39 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccccc
Confidence            57888999999988877776664 48999988875443

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=2  Score=27.04  Aligned_cols=90  Identities=23%  Similarity=0.286  Sum_probs=56.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      +.+..+|+|.|- |.-|..-.+..+.+|. +|++-....+.-+.  -.| -.|+|+       ..+.+++ +   ++|.-
T Consensus         3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT-~vVaGVtPgkgG~~--~~g-iPVf~s-------V~eAv~~-~---~~~~S   67 (119)
T d2nu7a1           3 IDKNTKVICQGFTGSQGTFHSEQAIAYGT-KMVGGVTPGKGGTT--HLG-LPVFNT-------VREAVAA-T---GATAS   67 (119)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECTTCTTEE--ETT-EEEESS-------HHHHHHH-H---CCCEE
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCC-ceEEEEccCCCCcc--cCC-CchhhH-------HHHHHHH-h---CCCeE
Confidence            356789999996 9999999999999999 77766454322111  112 235532       3344444 2   45666


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      +-.+..+.....++..+..+ =+++.+
T Consensus        68 vIfVPp~~a~dA~~EAi~ag-I~~iV~   93 (119)
T d2nu7a1          68 VIYVPAPFCKDSILEAIDAG-IKLIIT   93 (119)
T ss_dssp             EECCCGGGHHHHHHHHHHTT-CSEEEE
T ss_pred             EEeccHHHHHHHHHHHHHCC-CCEEEE
Confidence            65666665667777777766 555554

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=87.99  E-value=0.33  Score=35.59  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=27.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      -++|+|+|+.|+.++..+..+|. +|.+++..+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            38888999999999999999999 888887654

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.91  E-value=0.82  Score=35.30  Aligned_cols=32  Identities=25%  Similarity=0.214  Sum_probs=25.0

Q ss_pred             CCEEEEEcC-CHHHHHHHH-HHHHcCCCeEEEEcC
Q 025336           70 GSSVAVLGL-GTVGLGAVD-GARMQGAAKIIGIDK  102 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~-~a~~~g~~~v~~v~~  102 (254)
                      +-+|||+|+ |-+|..++. |++..|. +|+++|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~-~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC-EEEEEec
Confidence            347999987 999987765 5567888 9999863

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=87.71  E-value=1.3  Score=29.54  Aligned_cols=87  Identities=15%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             EEEEEcCCHHHHH-HHHHHHH-cCCCeEEEE-cCCcccHHH-HHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEE
Q 025336           72 SVAVLGLGTVGLG-AVDGARM-QGAAKIIGI-DKNPWKKEK-GEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  147 (254)
Q Consensus        72 ~vlI~G~g~~G~~-~~~~a~~-~g~~~v~~v-~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  147 (254)
                      +|.|+|.|.+|.- .+...+. -++ +++++ ++++++.+. ++.++.. .++       +..+ +   ..  .+|+|+-
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~-~i~~v~d~~~~~~~~~~~~~~~~-~~~-------~~~~-l---~~--~~D~V~I   67 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPICESWRIP-YAD-------SLSS-L---AA--SCDAVFV   67 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHHHHHHTCC-BCS-------SHHH-H---HT--TCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEechhHhhhhhhhccccc-ccc-------cchh-h---hh--hcccccc
Confidence            5789999999964 5665554 466 66554 555665544 4566654 221       1211 2   11  6899999


Q ss_pred             cCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          148 CTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       148 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      |+......+.+..++..+  +=|.+.-+
T Consensus        68 ~tp~~~h~~~~~~al~~g--k~V~~EKP   93 (164)
T d1tlta1          68 HSSTASHFDVVSTLLNAG--VHVCVDKP   93 (164)
T ss_dssp             CSCTTHHHHHHHHHHHTT--CEEEEESS
T ss_pred             cccchhcccccccccccc--ceeecccc
Confidence            998776777888888765  44555443

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.65  Score=37.95  Aligned_cols=38  Identities=16%  Similarity=0.214  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccH
Q 025336           70 GSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKK  107 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~  107 (254)
                      ..+|+|+|+|++|.-++.-+-..|.++++.+|.+.-..
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~   62 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG   62 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCCh
Confidence            46899999999999888888888998999987765333

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.28  E-value=0.39  Score=36.64  Aligned_cols=31  Identities=29%  Similarity=0.220  Sum_probs=27.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      ++|||+|+ |-+|..++..+...|. +|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            58999987 9999999999988999 8998863

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.28  E-value=3.5  Score=28.90  Aligned_cols=105  Identities=14%  Similarity=0.012  Sum_probs=58.9

Q ss_pred             HHHHHhcCCCCCCEEEEE-cC---CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHH-------HhcCCceEeCCCCCCCc
Q 025336           59 GAAWKEAEVEKGSSVAVL-GL---GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKG-------EAFGMTDFINPDDEPNK  127 (254)
Q Consensus        59 ~~l~~~~~~~~~~~vlI~-G~---g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~-------~~~g~~~v~~~~~~~~~  127 (254)
                      ..+.+..+-.+..+|+|+ |.   |+=|.++.+.++..|+ +|.++-..+++....       ++++.. .++..+   .
T Consensus        29 ~~i~~~~~~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~  103 (211)
T d2ax3a2          29 LAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVK-DVLVVFLGKKKTPDCEYNYGLYKKFGGK-VVEQFE---P  103 (211)
T ss_dssp             HHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSS-EEEEEECCSSCCHHHHHHHHHHHHTTCC-EESCCC---G
T ss_pred             HHHHHhcccccCCcEEEEECCCCCchhHHHHHHHHHhcCC-eeEEEecCccCCcHHHHHHHHHHHcCCc-cccccc---c
Confidence            333333332345678777 64   5666788888888898 777665443322222       233433 233221   1


Q ss_pred             hHHHHHHHhhCCCCccEEEEcCCC-------hhHHHHHHHHcccCCcEEEEEccCCC
Q 025336          128 SISELVKGITHGMGVDYCFECTGV-------PSLLSEALETTKVGKGKVIVIGVGVD  177 (254)
Q Consensus       128 ~~~~~i~~~~~~~~~d~v~d~~g~-------~~~~~~~~~~l~~~~G~~v~~g~~~~  177 (254)
                      .         ....+|+++|+.-+       ...+..+.+.++.....++.+..+++
T Consensus       104 ~---------~~~~~dlIIDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPSG  151 (211)
T d2ax3a2         104 S---------ILNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSG  151 (211)
T ss_dssp             G---------GGGGCSEEEEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCTT
T ss_pred             c---------cccCceEEEEecccCCccccchHHHHHHHHHHHhhccceeeeccCcc
Confidence            1         01278999998843       12456666666655256777777766

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=87.12  E-value=0.69  Score=31.87  Aligned_cols=67  Identities=15%  Similarity=0.100  Sum_probs=42.4

Q ss_pred             CCCEEEEEc--CCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHHHhhCCC
Q 025336           69 KGSSVAVLG--LGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        69 ~~~~vlI~G--~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      .+.+||=++  .|++|+   + |...|+.+|+.++.+++..+.+++    ++...  ++.      .+....+..  .+.
T Consensus        43 ~~~~vLDlfaGsG~~gi---e-alsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~------~d~~~~l~~--~~~  110 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGL---E-ALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVN------SNAMSFLAQ--KGT  110 (183)
T ss_dssp             TTCEEEETTCTTCHHHH---H-HHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEEC------SCHHHHHSS--CCC
T ss_pred             chhhhhhhhccccceee---e-EEecCcceeEEEEEeechhhHHHHHHhhccccceeeee------ecccccccc--ccc
Confidence            566777664  466654   3 445788899999999988887764    44322  332      334444433  234


Q ss_pred             CccEEEE
Q 025336          141 GVDYCFE  147 (254)
Q Consensus       141 ~~d~v~d  147 (254)
                      .||+||-
T Consensus       111 ~fDlIf~  117 (183)
T d2fpoa1         111 PHNIVFV  117 (183)
T ss_dssp             CEEEEEE
T ss_pred             ccCEEEE
Confidence            8999994

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.90  E-value=0.61  Score=30.92  Aligned_cols=37  Identities=35%  Similarity=0.522  Sum_probs=29.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCCcccH
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQG-AAKIIGIDKNPWKK  107 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~  107 (254)
                      .+|.|+|+|.+|..++..+...| +.+++.++.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            57889999999998888777776 35889998887653

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.87  E-value=2.8  Score=28.94  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=25.5

Q ss_pred             CccEEEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          141 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       141 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++|+|+||+|.-...+.+...+..+ -+-|++..+
T Consensus       103 gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP  136 (190)
T d1k3ta1         103 GVEYVIESTGLFTAKAAAEGHLRGG-ARKVVISAP  136 (190)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSC
T ss_pred             CCcEEEEecccccccccchhhcccC-cceeeeccC
Confidence            8999999999765667777788776 655666544

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=86.66  E-value=0.76  Score=30.18  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=30.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccHH
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKKE  108 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~  108 (254)
                      +|.|+|+|.+|...+..+...+. .++...|.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            57889999999998888887774 48999998877654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.61  E-value=0.39  Score=32.18  Aligned_cols=91  Identities=21%  Similarity=0.111  Sum_probs=53.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC--CeEEEEcCCcccHHH-HHhcCCce-EeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           70 GSSVAVLGL-GTVGLGAVDGARMQGA--AKIIGIDKNPWKKEK-GEAFGMTD-FINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        70 ~~~vlI~G~-g~~G~~~~~~a~~~g~--~~v~~v~~~~~~~~~-~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      |-+|.|+|+ |-+|.-+++++.....  .++... .+.+.... ........ ..+..+   .          .....|+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~-~s~~s~G~~~~~~~~~~~~~~~~~---~----------~~~~~d~   66 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYL-ASARSAGKSLKFKDQDITIEETTE---T----------AFEGVDI   66 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEE-ECGGGTTCEEEETTEEEEEEECCT---T----------TTTTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEe-cccccccccccccCCcccccccch---h----------hhhhhhh
Confidence            347999998 9999999999987643  133333 22221111 00011111 111111   1          1237899


Q ss_pred             EEEcCCChhHHHHHHHHcccCCcEEEEEccC
Q 025336          145 CFECTGVPSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       145 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ++-+.+...+.+...+....+ -++++.+..
T Consensus        67 ~f~~~~~~~s~~~~~~~~~~~-~~VIDlSsd   96 (154)
T d2gz1a1          67 ALFSAGSSTSAKYAPYAVKAG-VVVVDNTSY   96 (154)
T ss_dssp             EEECSCHHHHHHHHHHHHHTT-CEEEECSST
T ss_pred             hhhccCccchhhHHhhhcccc-ceehhcChh
Confidence            999998876666666677777 788888754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=86.33  E-value=2.9  Score=29.24  Aligned_cols=145  Identities=14%  Similarity=0.069  Sum_probs=70.1

Q ss_pred             CCCEEE-EEcCCHHH------HHHHHHHHHcCCCeEEEEcCCcccHHHH-------HhcCCceEeCCCCCCCchHHHH--
Q 025336           69 KGSSVA-VLGLGTVG------LGAVDGARMQGAAKIIGIDKNPWKKEKG-------EAFGMTDFINPDDEPNKSISEL--  132 (254)
Q Consensus        69 ~~~~vl-I~G~g~~G------~~~~~~a~~~g~~~v~~v~~~~~~~~~~-------~~~g~~~v~~~~~~~~~~~~~~--  132 (254)
                      +..+|+ +.|..++|      .+|.++. ..|. +|..+..+-.|..-.       +.++.........   .+..+.  
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~-~~g~-kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~---~~~~~~~~   82 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYK-GKGR-RPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG---ESPESIRR   82 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHH-HTTC-CEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTT---CCHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH-HCCC-cEEEEecccccchHHHHHHHHHHhcCCcccccccc---chhhHHHH
Confidence            344554 45754444      4444443 4577 777776766554433       3345543333322   333322  


Q ss_pred             -HHHhhCCCCccEEE-EcCCChh-------HHHHHHHHcccCCcEEEEEccCCCceeeccHHHHHhCCCEEEeeecCCCC
Q 025336          133 -VKGITHGMGVDYCF-ECTGVPS-------LLSEALETTKVGKGKVIVIGVGVDTMVPLNVIALACGGRTLKGTTFGGIK  203 (254)
Q Consensus       133 -i~~~~~~~~~d~v~-d~~g~~~-------~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  203 (254)
                       ...+.....+|+|+ |+.|-..       .+....+...+. =.+++.....+ ...+.....+++.+.+.+..+....
T Consensus        83 ~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~-~~llv~~a~~~-~~~~~~~~~f~~~~~~~~~I~TKlD  160 (207)
T d1ls1a2          83 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPD-EVLLVLDAMTG-QEALSVARAFDEKVGVTGLVLTKLD  160 (207)
T ss_dssp             HHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCS-EEEEEEEGGGT-HHHHHHHHHHHHHTCCCEEEEECGG
T ss_pred             HHHHHHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCc-eEEEEeccccc-hhHHHHHHHHHhhCCCCeeEEeecC
Confidence             22222223778875 9999532       233444556665 45555544443 1122222222233455555544444


Q ss_pred             CCCCHHHHHHHHhCCCC
Q 025336          204 TKSDLPILLDKCKNKEF  220 (254)
Q Consensus       204 ~~~~~~~~~~~~~~~~~  220 (254)
                      ....+-.++.+.....+
T Consensus       161 e~~~~G~~l~~~~~~~~  177 (207)
T d1ls1a2         161 GDARGGAALSARHVTGK  177 (207)
T ss_dssp             GCSSCHHHHHHHHHHCC
T ss_pred             ccccchHHHHHHHHHCC
Confidence            45556667776655443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=86.09  E-value=0.64  Score=32.07  Aligned_cols=70  Identities=16%  Similarity=0.129  Sum_probs=44.4

Q ss_pred             CCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCc---eEeCCCCCCCchHHHHHHHhhCC
Q 025336           69 KGSSVAVL--GLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMT---DFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        69 ~~~~vlI~--G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      .+.++|=+  |.|++|+-|+    ..|+..|+.++.+.+..+.+++    ++..   ..+..     .+..+.++.....
T Consensus        43 ~~~~vLDlFaGsG~~glEal----SRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~-----~d~~~~l~~~~~~  113 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEAL----SRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN-----QSSLDFLKQPQNQ  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHH----HTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC-----SCHHHHTTSCCSS
T ss_pred             ccceEeecccCccceeeeee----eecceeeEEeecccchhhhHhhHHhhhccccccccccc-----ccccccccccccC
Confidence            56677766  5588886443    7799899999999988777654    4431   22211     3344444443344


Q ss_pred             CCccEEEE
Q 025336          140 MGVDYCFE  147 (254)
Q Consensus       140 ~~~d~v~d  147 (254)
                      ..||+||=
T Consensus       114 ~~fDlIFl  121 (183)
T d2ifta1         114 PHFDVVFL  121 (183)
T ss_dssp             CCEEEEEE
T ss_pred             CcccEEEe
Confidence            47999983

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.06  E-value=3.7  Score=30.28  Aligned_cols=47  Identities=11%  Similarity=0.150  Sum_probs=33.8

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcC--CcccHHHHHhcCCceEe
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDK--NPWKKEKGEAFGMTDFI  119 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~--~~~~~~~~~~~g~~~v~  119 (254)
                      |....+|+.|.++...++.+|.+-++.+..  ++.|.+.++.+|++.++
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~  106 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVL  106 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEE
Confidence            333356999999999999999854444432  45678888889987543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.03  E-value=5.3  Score=29.79  Aligned_cols=101  Identities=17%  Similarity=0.110  Sum_probs=58.2

Q ss_pred             CCCCCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce-EeCCCCCCCchHHHHHHHhh-
Q 025336           66 EVEKGSSVAVLGL--GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD-FINPDDEPNKSISELVKGIT-  137 (254)
Q Consensus        66 ~~~~~~~vlI~G~--g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~~i~~~~-  137 (254)
                      +..++.+||=+.+  |+.++   .++ ..|+ +|+.|+.++.-.+.+++    .|.+. -+..-.   .|..+.+.+.. 
T Consensus       129 ~~~~~~rVLdlf~~tG~~sl---~aa-~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~---~D~~~~l~~~~~  200 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVASL---VAA-AAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC---EDAMKFIQREER  200 (309)
T ss_dssp             HSSSCCEEEEETCTTCHHHH---HHH-HTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC---SCHHHHHHHHHH
T ss_pred             hccCCCeEEEecCCCcHHHH---HHH-hCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEe---CCHHHhHHHHhh
Confidence            3457889997754  54444   333 3588 89999999998888875    23211 111112   44555554432 


Q ss_pred             CCCCccEEEEc---C--CC-----------hhHHHHHHHHcccCCcEEEEEccC
Q 025336          138 HGMGVDYCFEC---T--GV-----------PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       138 ~~~~~d~v~d~---~--g~-----------~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      .+..||+||--   .  +.           ...+..+..++.++ |.++++...
T Consensus       201 ~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~-g~~ll~t~~  253 (309)
T d2igta1         201 RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK-ALGLVLTAY  253 (309)
T ss_dssp             HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT-CCEEEEEEC
T ss_pred             cCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCC-CCEEEEecC
Confidence            34589999831   1  11           11233455678888 866555443

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=85.94  E-value=0.6  Score=33.61  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=28.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWK  106 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~  106 (254)
                      |+|+|+|+.|.-|+-.+.++|+ +++.++.+.+.
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~-ktllit~~~~~   37 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGV-RVGLLTQSLDA   37 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESCGGG
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEEeccch
Confidence            7888999999999999999999 77777666433

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.89  E-value=0.29  Score=32.91  Aligned_cols=39  Identities=18%  Similarity=0.317  Sum_probs=31.4

Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC
Q 025336           55 TTGFGAAWKEAEVEKGSSVAVLGLGTVGLGAVDGARMQGAA   95 (254)
Q Consensus        55 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~g~~   95 (254)
                      .+++..|  ......|++|+|+|+|.+|.-++..+.+.|+.
T Consensus        16 ~~a~d~L--~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          16 LSYLDVL--RDKAPVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             EEHHHHH--TSCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             EEHHHHh--hCccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            3455444  34567899999999999999999999999983

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.87  E-value=3.5  Score=27.62  Aligned_cols=97  Identities=11%  Similarity=0.046  Sum_probs=48.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC--CC-eEEEEcCCcccHHHHHhcCCce--------EeCCCCCCCchHHHHHHHhhCCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQG--AA-KIIGIDKNPWKKEKGEAFGMTD--------FINPDDEPNKSISELVKGITHGM  140 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g--~~-~v~~v~~~~~~~~~~~~~g~~~--------v~~~~~~~~~~~~~~i~~~~~~~  140 (254)
                      +|.++|.|.+|...+++.....  .. ++.++..+.. .- ....|.+.        -.........+............
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER-SL-ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSP   83 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB-EE-ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeee-ee-ecccccchHhhhhhhhhhhhcccccccHHHHHHHhccCC
Confidence            4778899999999988776432  21 4555533211 10 00001000        00000000011222222233344


Q ss_pred             CccEEEEcCCChhHHHHHHHHcccCCcEEEE
Q 025336          141 GVDYCFECTGVPSLLSEALETTKVGKGKVIV  171 (254)
Q Consensus       141 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  171 (254)
                      ..++++||.++....+.....+..+ =.+|.
T Consensus        84 ~~~vivd~t~~~~~~~~~~~aL~~G-~hVVT  113 (168)
T d1ebfa1          84 KPVILVDNTSSAYIAGFYTKFVENG-ISIAT  113 (168)
T ss_dssp             SCEEEEECSCCHHHHTTHHHHHHTT-CEEEC
T ss_pred             CceEEEEecCChHHHHHHHHHHHcC-CeEEe
Confidence            6789999999887666666777765 44443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.68  E-value=1.2  Score=31.13  Aligned_cols=43  Identities=26%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA  112 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~  112 (254)
                      -+|.+||=.|+|. |.+++.++ ..|+.+|++++.+++..+.+++
T Consensus        45 l~g~~vLDlg~Gt-G~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~   87 (201)
T d1wy7a1          45 IEGKVVADLGAGT-GVLSYGAL-LLGAKEVICVEVDKEAVDVLIE   87 (201)
T ss_dssp             STTCEEEEETCTT-CHHHHHHH-HTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECcCcc-hHHHHHHH-HcCCCEEEEEcCcHHHHHHHHH
Confidence            3688999887653 44444443 4676699999999988888765

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=85.54  E-value=1.2  Score=31.90  Aligned_cols=96  Identities=11%  Similarity=0.091  Sum_probs=54.5

Q ss_pred             CEEEEEcCCH----HHHHHHHHHHHc--CCCeEEEE-cCCcccHH-HHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           71 SSVAVLGLGT----VGLGAVDGARMQ--GAAKIIGI-DKNPWKKE-KGEAFGMTDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        71 ~~vlI~G~g~----~G~~~~~~a~~~--g~~~v~~v-~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      =+|.|+|.|.    ++..-+...+..  ++ +++++ +++.++.+ ++++++....-.+.     ++.+.+    ....+
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~----~~~~i   86 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQLQLKHATGFD-----SLESFA----QYKDI   86 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHTTCTTCEEES-----CHHHHH----HCTTC
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhcccccceeec-----chhhcc----ccccc
Confidence            3688999765    344444444443  45 67754 55555544 45667643322222     233322    22389


Q ss_pred             cEEEEcCCChhHHHHHHHHcccCC----cEEEEEccCC
Q 025336          143 DYCFECTGVPSLLSEALETTKVGK----GKVIVIGVGV  176 (254)
Q Consensus       143 d~v~d~~g~~~~~~~~~~~l~~~~----G~~v~~g~~~  176 (254)
                      |+|+.|+......+.+..++..+.    ++=|.+.-+-
T Consensus        87 D~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPl  124 (237)
T d2nvwa1          87 DMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWAL  124 (237)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSS
T ss_pred             ceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccc
Confidence            999999987766777777776420    3456665543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.38  E-value=2.1  Score=28.12  Aligned_cols=60  Identities=13%  Similarity=0.062  Sum_probs=45.9

Q ss_pred             HhcCCCCCCEEEEE-cCCHHHHHHHHHHHHcC-CCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           63 KEAEVEKGSSVAVL-GLGTVGLGAVDGARMQG-AAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        63 ~~~~~~~~~~vlI~-G~g~~G~~~~~~a~~~g-~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      ..+++...+.+++. +.-..-..++..+|.++ ..++++...+++..+.+++.|++.++.+.
T Consensus        65 ~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~  126 (153)
T d1id1a_          65 KKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQ  126 (153)
T ss_dssp             HHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHH
T ss_pred             HHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECHH
Confidence            67788777777766 34455567778888764 33789988899999999999999998654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=85.22  E-value=0.47  Score=33.57  Aligned_cols=93  Identities=11%  Similarity=0.077  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHHh----cCCc--eEeCCCCCCCchHHHHHHHhhCCCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGEA----FGMT--DFINPDDEPNKSISELVKGITHGMG  141 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~  141 (254)
                      ++++++=+|+|+ |.=.+-+|-.. .. +++.++....|..+++.    +|-+  .+++.+.   +       +......
T Consensus        65 ~~~~ilDiGsGa-G~PGi~laI~~p~~-~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~---E-------~~~~~~~  132 (207)
T d1jsxa_          65 QGERFIDVGTGP-GLPGIPLSIVRPEA-HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---E-------EFPSEPP  132 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---T-------TSCCCSC
T ss_pred             cCCceeeeeccC-Cceeeehhhhcccc-eEEEEecchHHHHHHHHHHHHcCCcceeeeccch---h-------hhccccc
Confidence            456888777532 33334444433 35 99999999999999864    6643  3554443   2       2223337


Q ss_pred             ccEEEE-cCCCh-hHHHHHHHHcccCCcEEEEEcc
Q 025336          142 VDYCFE-CTGVP-SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       142 ~d~v~d-~~g~~-~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      ||+|.- +++.. ..++.+...+.++ |+++.+-.
T Consensus       133 fD~V~sRA~~~~~~ll~~~~~~l~~~-g~~~~~KG  166 (207)
T d1jsxa_         133 FDGVISRAFASLNDMVSWCHHLPGEQ-GRFYALKG  166 (207)
T ss_dssp             EEEEECSCSSSHHHHHHHHTTSEEEE-EEEEEEES
T ss_pred             cceehhhhhcCHHHHHHHHHHhcCCC-cEEEEECC
Confidence            898874 55442 2455666678888 98887754

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.19  E-value=2.1  Score=28.12  Aligned_cols=91  Identities=15%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             EEEEEcC-CHHHHHHHHH-HHHc--CCCeEEEEcCCcccHHHHHhcC-CceEeCCCCCCCchHHHHHHHhhCCCCccEEE
Q 025336           72 SVAVLGL-GTVGLGAVDG-ARMQ--GAAKIIGIDKNPWKKEKGEAFG-MTDFINPDDEPNKSISELVKGITHGMGVDYCF  146 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~-a~~~--g~~~v~~v~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  146 (254)
                      +|.|+|+ |-+|+-.+++ +.+.  -..++.....+...-......+ ...+.+..+     ..    .+   .++|++|
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~-----~~----~~---~~~DivF   70 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFD-----LE----AL---KALDIIV   70 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTC-----HH----HH---HTCSEEE
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccc-----hh----hh---hcCcEEE
Confidence            6889998 9999999975 4433  2225555543322111110011 111111111     11    11   2899999


Q ss_pred             EcCCChhHHHHHHHHcccCC-cEEEEEcc
Q 025336          147 ECTGVPSLLSEALETTKVGK-GKVIVIGV  174 (254)
Q Consensus       147 d~~g~~~~~~~~~~~l~~~~-G~~v~~g~  174 (254)
                      -|++...+.+..-+....++ ..++..+.
T Consensus        71 ~a~~~~~s~~~~~~~~~~g~~~~VID~Ss   99 (146)
T d1t4ba1          71 TCQGGDYTNEIYPKLRESGWQGYWIDAAS   99 (146)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             EecCchHHHHhhHHHHhcCCCeecccCCc
Confidence            99998744344444444331 23555554

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=85.01  E-value=0.33  Score=35.62  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=59.9

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCcccHHHHH----hcCC-ceE-eCCCCCCCchHHHHHHH
Q 025336           63 KEAEVEKGSSVAVLGLGTVGLGAVDGARMQ-GAAKIIGIDKNPWKKEKGE----AFGM-TDF-INPDDEPNKSISELVKG  135 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~g~~G~~~~~~a~~~-g~~~v~~v~~~~~~~~~~~----~~g~-~~v-~~~~~~~~~~~~~~i~~  135 (254)
                      ....+....+||=+|+|. |..+..+++.. +. ++++++. ++-.+.++    +.|. +.+ +...+     ..+   .
T Consensus        75 ~~~d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d-----~~~---~  143 (256)
T d1qzza2          75 DAYDWSAVRHVLDVGGGN-GGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGD-----FFK---P  143 (256)
T ss_dssp             HTSCCTTCCEEEEETCTT-SHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC-----TTS---C
T ss_pred             hcCCCccCCEEEEECCCC-CHHHHHHHHhhcCc-EEEEecC-hHHHHHHHHHHhhcCCcceeeeeeee-----ccc---c
Confidence            444566778899888764 88999999976 55 8899886 44444443    2332 211 11111     100   1


Q ss_pred             hhCCCCccEEEEcC-----CCh---hHHHHHHHHcccCCcEEEEEcc
Q 025336          136 ITHGMGVDYCFECT-----GVP---SLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       136 ~~~~~~~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      . . .++|+++-..     ..+   ..+..+.+.|+|+ |+++++..
T Consensus       144 ~-p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg-G~llI~d~  187 (256)
T d1qzza2         144 L-P-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPG-GRLLVLDR  187 (256)
T ss_dssp             C-S-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             c-c-ccchhhhccccccccCcHHHHHHHHHHHhhcCCc-ceeEEEEe
Confidence            1 2 2688887432     111   2467888899999 99998765

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.98  E-value=0.81  Score=32.42  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=27.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH--------------------HcCCCeEEEEcCC
Q 025336           69 KGSSVAVLGLGTVGLGAVDGAR--------------------MQGAAKIIGIDKN  103 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~--------------------~~g~~~v~~v~~~  103 (254)
                      .+++|+|+|+|.+++-++..+.                    ..|+++|..+.+.
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            5789999999999998877665                    5677677777654

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.89  E-value=3.3  Score=26.45  Aligned_cols=90  Identities=19%  Similarity=0.192  Sum_probs=54.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEE
Q 025336           67 VEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  145 (254)
Q Consensus        67 ~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  145 (254)
                      +.++.+|++.|- |.-|..-.+..+.+|- ++++-....+.-+..  .| -.|+|.       ..+.+++ +   ++|.-
T Consensus        12 i~k~TrVivQGiTG~~G~~ht~~m~~YGT-~iVaGVtPgKgG~~~--~g-iPVf~t-------V~eA~~~-~---~~daS   76 (130)
T d1euca1          12 VDKNTKVICQGFTGKQGTFHSQQALEYGT-NLVGGTTPGKGGKTH--LG-LPVFNT-------VKEAKEQ-T---GATAS   76 (130)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECTTCTTCEE--TT-EEEESS-------HHHHHHH-H---CCCEE
T ss_pred             EcCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEeeccCCCCccc--cC-ccchhh-------HHHHHHh-c---CCcEE
Confidence            567889999996 9999999999999999 777664443211110  11 124422       3333333 2   45555


Q ss_pred             EEcCCChhHHHHHHHHcccCCcEEEEE
Q 025336          146 FECTGVPSLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       146 ~d~~g~~~~~~~~~~~l~~~~G~~v~~  172 (254)
                      +-.+..+.....+++.+..+ =+++++
T Consensus        77 vIfVPp~~a~dAi~EAi~ag-I~liV~  102 (130)
T d1euca1          77 VIYVPPPFAAAAINEAIDAE-VPLVVC  102 (130)
T ss_dssp             EECCCHHHHHHHHHHHHHTT-CSEEEE
T ss_pred             EEecCHHHHHHHHHHHHhCC-CCEEEE
Confidence            55666555556666666665 555444

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.79  E-value=3.7  Score=27.55  Aligned_cols=70  Identities=14%  Similarity=0.008  Sum_probs=39.0

Q ss_pred             EEEEEcCCHHH--HHHHHHHHHcC---CCeEEEEcCCccc--HHHHH--------hcCCc-eEeCCCCCCCchHHHHHHH
Q 025336           72 SVAVLGLGTVG--LGAVDGARMQG---AAKIIGIDKNPWK--KEKGE--------AFGMT-DFINPDDEPNKSISELVKG  135 (254)
Q Consensus        72 ~vlI~G~g~~G--~~~~~~a~~~g---~~~v~~v~~~~~~--~~~~~--------~~g~~-~v~~~~~~~~~~~~~~i~~  135 (254)
                      +|.|+|+|++|  .....+++...   ..+++.++.++++  .+.+.        .++.+ .+..+.     +..+.+  
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~t-----d~~~al--   75 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTL-----DRRRAL--   75 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEES-----CHHHHH--
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecC-----Cchhhc--
Confidence            57888987554  55566665432   2378888887654  32222        12332 222222     222222  


Q ss_pred             hhCCCCccEEEEcCCCh
Q 025336          136 ITHGMGVDYCFECTGVP  152 (254)
Q Consensus       136 ~~~~~~~d~v~d~~g~~  152 (254)
                          .+.|+|+.+++.+
T Consensus        76 ----~gaDvVv~ta~~~   88 (169)
T d1s6ya1          76 ----DGADFVTTQFRVG   88 (169)
T ss_dssp             ----TTCSEEEECCCTT
T ss_pred             ----CCCCEEEEccccC
Confidence                2889999999854

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.69  E-value=0.79  Score=32.74  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc
Q 025336           69 KGSSVAVLGLGTVGLGAVDGARMQ   92 (254)
Q Consensus        69 ~~~~vlI~G~g~~G~~~~~~a~~~   92 (254)
                      .+++|+|+|+|.+++=++..+...
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcC
Confidence            589999999999999999888763

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.69  E-value=4.1  Score=27.79  Aligned_cols=105  Identities=22%  Similarity=0.327  Sum_probs=64.4

Q ss_pred             HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCc--eEeCCCCCCCchHHHHHHHhhCC
Q 025336           63 KEAEVEKGSSVAVLGL-GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMT--DFINPDDEPNKSISELVKGITHG  139 (254)
Q Consensus        63 ~~~~~~~~~~vlI~G~-g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~  139 (254)
                      ....+++|..+ |-+. |+=|+ .-.+++. +. +|+++|++++....++..-..  ..+..+-   .++.+.+..... 
T Consensus        12 ~~l~~~~g~~~-vD~T~G~GGh-s~~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f---~~~~~~l~~~~~-   83 (182)
T d1wg8a2          12 DLLAVRPGGVY-VDATLGGAGH-ARGILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALGV-   83 (182)
T ss_dssp             HHHTCCTTCEE-EETTCTTSHH-HHHHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTTC-
T ss_pred             HhcCCCCCCEE-EEeCCCCcHH-HHHHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHH---HHHHHHHHHcCC-
Confidence            34457788754 4543 44344 3344443 55 899999999988888764322  2333332   555555555433 


Q ss_pred             CCccEEEEcCCChh---------------HHHHHHHHcccCCcEEEEEccCC
Q 025336          140 MGVDYCFECTGVPS---------------LLSEALETTKVGKGKVIVIGVGV  176 (254)
Q Consensus       140 ~~~d~v~d~~g~~~---------------~~~~~~~~l~~~~G~~v~~g~~~  176 (254)
                      ..+|.|+=-.|-+.               .++.....+.++ |++++.....
T Consensus        84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~fhs  134 (182)
T d1wg8a2          84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAFHS  134 (182)
T ss_dssp             SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEECSH
T ss_pred             CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEeccc
Confidence            37988873334321               367778889998 9988876543

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.62  E-value=0.66  Score=32.94  Aligned_cols=30  Identities=30%  Similarity=0.327  Sum_probs=24.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      |+|+|+|+.|+.++..+..+|.++|.+++.
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            678899999999988888888756777754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=84.60  E-value=1.2  Score=28.50  Aligned_cols=60  Identities=15%  Similarity=0.085  Sum_probs=43.7

Q ss_pred             HhcCCCCCCEEEEE-cCC-HHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCC
Q 025336           63 KEAEVEKGSSVAVL-GLG-TVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPD  122 (254)
Q Consensus        63 ~~~~~~~~~~vlI~-G~g-~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~  122 (254)
                      ...++...+.+++. +.- ..-.++...++..+..++++...+++..+.++.+|++.++...
T Consensus        58 ~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~  119 (134)
T d2hmva1          58 LSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE  119 (134)
T ss_dssp             HHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHH
T ss_pred             hccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChH
Confidence            45566666665554 443 4445566667788877899888888889999999999998654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.44  E-value=2.2  Score=32.14  Aligned_cols=101  Identities=19%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCcccHHHH----HhcCCceEeCCCCCCCchHHHHHHHhhCCCCc
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGAR-MQGAAKIIGIDKNPWKKEKG----EAFGMTDFINPDDEPNKSISELVKGITHGMGV  142 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~-~~g~~~v~~v~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  142 (254)
                      +...++.|+|+|..+..-++... ....++|.+.++++++.+..    +..+.....+.        .+.+      .+.
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~--------~~a~------~~a  188 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP--------AEEA------SRC  188 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC--------HHHH------TSS
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch--------hhhh------ccc
Confidence            44567889999999988776666 56678999999998876544    23444333211        1122      278


Q ss_pred             cEEEEcCCChh-HHHHHHHHcccCCcEEEEEccCCCceeeccHH
Q 025336          143 DYCFECTGVPS-LLSEALETTKVGKGKVIVIGVGVDTMVPLNVI  185 (254)
Q Consensus       143 d~v~d~~g~~~-~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~  185 (254)
                      |+|+-|+.+.. .+..  +.++++ -.+..+|........++..
T Consensus       189 DiV~taT~s~~P~~~~--~~l~~G-~hv~~iGs~~p~~~Eld~~  229 (320)
T d1omoa_         189 DVLVTTTPSRKPVVKA--EWVEEG-THINAIGADGPGKQELDVE  229 (320)
T ss_dssp             SEEEECCCCSSCCBCG--GGCCTT-CEEEECSCCSTTCCCBCHH
T ss_pred             cEEEEeccCcccccch--hhcCCC-CeEeecCCccccccccCHH
Confidence            99998776532 2221  357887 7888888765533445444

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=84.14  E-value=4.6  Score=27.43  Aligned_cols=97  Identities=22%  Similarity=0.273  Sum_probs=55.3

Q ss_pred             CCCCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           67 VEKGSSVAVLGL--GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        67 ~~~~~~vlI~G~--g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ++++.+||=+|+  |+--+.+.+..  ....++++++..+-+     .......+...- ........+.......++|+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~--~~~~~v~~vDl~~~~-----~i~~~~~~~~d~-~~~~~~~~~~~~~~~~~~Dl   91 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQI--GGKGRIIACDLLPMD-----PIVGVDFLQGDF-RDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHH--CTTCEEEEEESSCCC-----CCTTEEEEESCT-TSHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCeEEEEeccCCcceEEEEeec--cccceEEEeeccccc-----ccCCceEeeccc-ccchhhhhhhhhccCcceeE
Confidence            578899988885  65545444432  223478888766522     111112221111 12444555555555558999


Q ss_pred             EE-E----cCCCh------------hHHHHHHHHcccCCcEEEEE
Q 025336          145 CF-E----CTGVP------------SLLSEALETTKVGKGKVIVI  172 (254)
Q Consensus       145 v~-d----~~g~~------------~~~~~~~~~l~~~~G~~v~~  172 (254)
                      |+ |    ++|..            ..+..+.+.++++ |.+|+=
T Consensus        92 VlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g-G~fV~K  135 (180)
T d1ej0a_          92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVK  135 (180)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCC-CcEEEE
Confidence            98 3    33432            1466778889999 988853

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.11  E-value=1.6  Score=30.55  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHH----hcCCce--EeCCCCCCCchHHHHHHHhhCCCCccE
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGE----AFGMTD--FINPDDEPNKSISELVKGITHGMGVDY  144 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~----~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~  144 (254)
                      ..||=+|.|. |..++.+|+..--..+++++.++.....+.    +.+..+  ++..+.   .++.    +......+|.
T Consensus        33 plvLdIGcG~-G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da---~~l~----~~~~~~~~~~  104 (204)
T d1yzha1          33 PIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDLT----DYFEDGEIDR  104 (204)
T ss_dssp             CEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCGG----GTSCTTCCSE
T ss_pred             CeEEEEeccC-CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCH---HHHh----hhccCCceeh
Confidence            4566668775 899999999874449999999988777653    344432  232221   2222    2223337888


Q ss_pred             EEEcCCC--------------hhHHHHHHHHcccCCcEEEEEc
Q 025336          145 CFECTGV--------------PSLLSEALETTKVGKGKVIVIG  173 (254)
Q Consensus       145 v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g  173 (254)
                      ++-....              +..+..+.+.|+++ |.+....
T Consensus       105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg-G~l~i~T  146 (204)
T d1yzha1         105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN-GEIHFKT  146 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             hcccccccccchhhhhhhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence            7755443              34678889999999 9987654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=83.75  E-value=0.51  Score=33.84  Aligned_cols=32  Identities=28%  Similarity=0.287  Sum_probs=25.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |+|+|+|+-|+.++..+.+.|.++|.+++..+
T Consensus         6 vvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            67889999999988888888875677776543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.57  E-value=0.72  Score=30.82  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=24.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGAAKIIGIDKN  103 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~  103 (254)
                      .+|+|+|+|.+|.-+++.++. +. +|.++++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CC-CEEEEecc
Confidence            479999999999887766654 56 78888654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=83.51  E-value=0.45  Score=36.14  Aligned_cols=31  Identities=23%  Similarity=0.240  Sum_probs=26.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025336           73 VAVLGLGTVGLGAVDGARMQGAAKIIGIDKNP  104 (254)
Q Consensus        73 vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~~~  104 (254)
                      |||+|+|..|+.++--+...|. +|+++++.+
T Consensus        10 VlVVG~G~AGl~AAl~aa~~G~-~V~lleK~~   40 (330)
T d1neka2          10 AVVIGAGGAGMRAALQISQSGQ-TCALLSKVF   40 (330)
T ss_dssp             CEEECCSHHHHHHHHHHHHTTC-CCEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence            7899999999998888888899 888887654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=83.18  E-value=0.8  Score=31.58  Aligned_cols=93  Identities=17%  Similarity=0.135  Sum_probs=49.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcC-CcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQ-GAAKIIGIDK-NPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~-g~~~v~~v~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      +|.|+|+ |-+|+-+++++... .. ++..+.. +...........-....+...  .....    + ..-.+.|++|-|
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~--~~~~~----~-~~~~~~Dvvf~a   78 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPN--LVAVK----D-ADFSNVDAVFCC   78 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCC--CBCGG----G-CCGGGCSEEEEC
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCcccccccccccccccc--chhhh----h-hhhcccceeeec
Confidence            5789997 99999999998854 34 5544422 222221111110000000000  00000    0 011379999999


Q ss_pred             CCChhHHHHHHHHcccCCcEEEEEcc
Q 025336          149 TGVPSLLSEALETTKVGKGKVIVIGV  174 (254)
Q Consensus       149 ~g~~~~~~~~~~~l~~~~G~~v~~g~  174 (254)
                      .....+ ......+... +..+....
T Consensus        79 lp~~~s-~~~~~~l~~~-~~~v~~~~  102 (183)
T d2cvoa1          79 LPHGTT-QEIIKGLPQE-LKIVDLSA  102 (183)
T ss_dssp             CSSSHH-HHHHHTSCSS-CEEEECSS
T ss_pred             cccchH-HHHHHHHHhc-Ccccccch
Confidence            998744 4555667777 87776654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=83.07  E-value=3.8  Score=29.18  Aligned_cols=109  Identities=13%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             hhhHHHHHhcCCCCCCEEEEEcC--CHHHHHHHHHHHHcCC-CeEEEEcCCcccHHHHHh-cCCceEeCCCCCCCchHHH
Q 025336           56 TGFGAAWKEAEVEKGSSVAVLGL--GTVGLGAVDGARMQGA-AKIIGIDKNPWKKEKGEA-FGMTDFINPDDEPNKSISE  131 (254)
Q Consensus        56 ta~~~l~~~~~~~~~~~vlI~G~--g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~  131 (254)
                      .+|+.+....++   ++||=+|.  |....+..++++..+. .+++.++.+.++...... ..--.++.... +.....+
T Consensus        70 ~~~~eli~~~KP---k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs-~~~~~~~  145 (232)
T d2bm8a1          70 AVYHDMLWELRP---RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDC-SDLTTFE  145 (232)
T ss_dssp             HHHHHHHHHHCC---SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCS-SCSGGGG
T ss_pred             HHHHHHHHHhCC---CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeeccc-ccHHHHH
Confidence            355555444433   57888894  7777777788887663 389999987655433221 22222332221 1123322


Q ss_pred             HHHHhhCCCCccE-EEEcCCChh-HHH--HHHHHcccCCcEEEEEc
Q 025336          132 LVKGITHGMGVDY-CFECTGVPS-LLS--EALETTKVGKGKVIVIG  173 (254)
Q Consensus       132 ~i~~~~~~~~~d~-v~d~~g~~~-~~~--~~~~~l~~~~G~~v~~g  173 (254)
                         .+... .+|. ++|..-... .+.  ...+.++++ |.+++-.
T Consensus       146 ---~l~~~-~~dlIfID~~H~~~~v~~~~~~~~lLk~G-G~iIveD  186 (232)
T d2bm8a1         146 ---HLREM-AHPLIFIDNAHANTFNIMKWAVDHLLEEG-DYFIIED  186 (232)
T ss_dssp             ---GGSSS-CSSEEEEESSCSSHHHHHHHHHHHTCCTT-CEEEECS
T ss_pred             ---HHHhc-CCCEEEEcCCcchHHHHHHHHHhcccCcC-CEEEEEc
Confidence               22222 4454 456442221 111  234678888 8776643

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.02  E-value=0.26  Score=31.86  Aligned_cols=81  Identities=12%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHH-HcCCCeEEEE-cCCcccHHHHHhcCCceEeCCCCCCCchHHHHHHHhhCCCCccEEEEc
Q 025336           71 SSVAVLGLGTVGLGAVDGAR-MQGAAKIIGI-DKNPWKKEKGEAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  148 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~-~~g~~~v~~v-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  148 (254)
                      .+|+|+|+|..|.+++...+ ..++ ++++. +.++++...  ...--.|+..     +++.+    +... ..++++-+
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~-~iv~fiDdd~~k~G~--~I~Gi~V~~~-----~~l~~----~~~~-~i~iai~~   70 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESF-ELRGFFDVDPEKVGR--PVRGGVIEHV-----DLLPQ----RVPG-RIEIALLT   70 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSE-EEEEEEESCTTTTTC--EETTEEEEEG-----GGHHH----HSTT-TCCEEEEC
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCc-EEEEEEeCchHhcCC--EECCEEEecH-----HHHHH----HHhh-cccEEEEe
Confidence            47999999999997776443 4466 66655 334333221  1222234432     23332    2222 67888888


Q ss_pred             CCChhHHHHHHHHcccC
Q 025336          149 TGVPSLLSEALETTKVG  165 (254)
Q Consensus       149 ~g~~~~~~~~~~~l~~~  165 (254)
                      +... ..+...+.+-..
T Consensus        71 i~~~-~~~~I~d~l~~~   86 (126)
T d2dt5a2          71 VPRE-AAQKAADLLVAA   86 (126)
T ss_dssp             SCHH-HHHHHHHHHHHH
T ss_pred             CCHH-HHHHHHHHHHHc
Confidence            8876 445665555544

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.00  E-value=0.69  Score=34.73  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=26.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHH--HcCCCeEEEEcCCc
Q 025336           70 GSSVAVLGLGTVGLGAVDGAR--MQGAAKIIGIDKNP  104 (254)
Q Consensus        70 ~~~vlI~G~g~~G~~~~~~a~--~~g~~~v~~v~~~~  104 (254)
                      +..|+|+|+|+.|+.++..+.  ..|. +|+++++..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~-~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSV   85 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEEcCC
Confidence            344999999999998776555  3588 899997764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=82.88  E-value=0.29  Score=33.64  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGA   94 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~   94 (254)
                      .+|+|+|+|.+|.-++..++..|.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~   27 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGY   27 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCC
Confidence            349999999999999888888887

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.41  E-value=0.6  Score=28.97  Aligned_cols=34  Identities=21%  Similarity=0.016  Sum_probs=20.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025336           68 EKGSSVAVLGLGTVGLGAVDGARMQGAAKIIGIDK  102 (254)
Q Consensus        68 ~~~~~vlI~G~g~~G~~~~~~a~~~g~~~v~~v~~  102 (254)
                      -+|++|||+|+|..|.-.+..+..... +++.+.+
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak-~v~~~~~   63 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAK-HPIYQSL   63 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcC-EEEEEEe
Confidence            478999999998777654433333333 4443333

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=82.27  E-value=0.2  Score=37.96  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=20.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCC
Q 025336           72 SVAVLGL-GTVGLGAVDGARMQGA   94 (254)
Q Consensus        72 ~vlI~G~-g~~G~~~~~~a~~~g~   94 (254)
                      +|||+|+ |-+|..+++.+...|.
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~   25 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAY   25 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC
Confidence            6999986 9999999998887775

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=82.02  E-value=1.4  Score=33.35  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=24.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEc
Q 025336           71 SSVAVLGL-GTVGLGAVDGARMQGAA-KIIGID  101 (254)
Q Consensus        71 ~~vlI~G~-g~~G~~~~~~a~~~g~~-~v~~v~  101 (254)
                      .+|||+|+ |-+|..++..+...|.. +|++.+
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            47999987 99999999888877862 455554

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=81.98  E-value=1.5  Score=31.57  Aligned_cols=97  Identities=11%  Similarity=0.054  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCCcccHHHHHh----cCCce--EeCCCCCCCchHHHHHHHh-hC
Q 025336           68 EKGSSVAVLGL--GTVGLGAVDGARMQGAAKIIGIDKNPWKKEKGEA----FGMTD--FINPDDEPNKSISELVKGI-TH  138 (254)
Q Consensus        68 ~~~~~vlI~G~--g~~G~~~~~~a~~~g~~~v~~v~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~-~~  138 (254)
                      ..+.+++=+|+  |--|.   -++-...-.+++.++.+..|..+++.    +|-..  ++..+.   ++    +... ..
T Consensus        69 ~~~~~ilDiGSGaGfPGi---~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~---E~----~~~~~~~  138 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSL---PIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA---ET----FGQRKDV  138 (239)
T ss_dssp             GGCCEEEEECSSSCTTHH---HHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH---HH----HTTCTTT
T ss_pred             cCCCeEEeecCCCchHHH---HHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehh---hh----ccccccc
Confidence            35678887875  44443   44444433389999999999999864    56433  443331   11    1110 11


Q ss_pred             CCCccEEEE-cCCC-hhHHHHHHHHcccCCcEEEEEccC
Q 025336          139 GMGVDYCFE-CTGV-PSLLSEALETTKVGKGKVIVIGVG  175 (254)
Q Consensus       139 ~~~~d~v~d-~~g~-~~~~~~~~~~l~~~~G~~v~~g~~  175 (254)
                      ...||+|.- +++. +..++.+...++++ |+++.+=..
T Consensus       139 ~~~~D~v~sRAva~l~~ll~~~~~~l~~~-g~~i~~KG~  176 (239)
T d1xdza_         139 RESYDIVTARAVARLSVLSELCLPLVKKN-GLFVALKAA  176 (239)
T ss_dssp             TTCEEEEEEECCSCHHHHHHHHGGGEEEE-EEEEEEECC
T ss_pred             cccceEEEEhhhhCHHHHHHHHhhhcccC-CEEEEECCC
Confidence            237899985 4443 33566777788888 988877543

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.92  E-value=1.5  Score=29.43  Aligned_cols=36  Identities=22%  Similarity=0.441  Sum_probs=29.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCccc
Q 025336           71 SSVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWK  106 (254)
Q Consensus        71 ~~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~  106 (254)
                      .+|.|+|+|.+|..++..+...|. .+++.+|.++++
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~   56 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDK   56 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchh
Confidence            579999999999999988887775 478999888654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.78  E-value=1  Score=32.04  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGAA--KIIGIDKN  103 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~~--~v~~v~~~  103 (254)
                      +|+|+|+|+.|+.++..|.++|.+  +|..++..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            588999999999888877766642  67777653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.93  E-value=1.4  Score=28.94  Aligned_cols=36  Identities=17%  Similarity=0.118  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCcccH
Q 025336           72 SVAVLGLGTVGLGAVDGARMQGA-AKIIGIDKNPWKK  107 (254)
Q Consensus        72 ~vlI~G~g~~G~~~~~~a~~~g~-~~v~~v~~~~~~~  107 (254)
                      +|.|+|+|.+|..++-.+...|. .+++.+|.++++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   38 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLA   38 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchh
Confidence            57888999999988877776664 5799998887653

>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.03  E-value=2.2  Score=29.14  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=29.3

Q ss_pred             cCCCCCCEEEEE----cCCHHHHHHHHHHHHcCCCeEEEE
Q 025336           65 AEVEKGSSVAVL----GLGTVGLGAVDGARMQGAAKIIGI  100 (254)
Q Consensus        65 ~~~~~~~~vlI~----G~g~~G~~~~~~a~~~g~~~v~~v  100 (254)
                      ..+.+|++|||.    ..|++-.+++++++..|+ +|+.+
T Consensus       113 ~~i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga-~vvg~  151 (178)
T d1zn7a1         113 DALEPGQRVVVVDDLLATGGTMNAACELLGRLQA-EVLEC  151 (178)
T ss_dssp             TSSCTTCEEEEEEEEESSSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             CcccCCCeEEEehhhhhhchHHHHHHHHHHHCCC-EEEEE
Confidence            346789999988    348999999999999999 77655