Citrus Sinensis ID: 025361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWVCYLKASELYI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccEEEEEEEEEccccccEEEEEEccccccEEEcccccEEccccEEEEEEEEEcccccccccccccccccEEEEEEEEEcccccccHHHHccccccccEEEEEEEEEccccccccHHHHHHHHHccHHHHHHHccccccccccccccccEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEccccccccccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEcccccccHHHHccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEHHHHHHHHcHccc
Coil and Loop (DISEMBL)
maiadrksasdskgwgffklpfrqsgnssnttstsssashqhqnqsnqqvegskthgsssvsSVARsllpkrrrlkldpanklyfpyeagKQVRSAIKIKNtskshvafkfqttapkscfmrppgailapgeSLIATVFKFvelpennekpmyqksRDKFKIISMKVkadvdyvpelfdeQKDQTAAEQILRVVflnperpepALEKLKRQLADADAAVAarkkppedtgpriigegLVIDEWVCYLKASELYI
Flexible Loop (DISEMBL)
maiadrksasdskgwgfFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQqvegskthgsssvssvarsllpkrrrlkldpanklyfpyeagkqvrSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVelpennekpmyqksrdkFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVaarkkppedtgpriigeglviDEWVCYLKASELYI
Low Complexity Region (SEG)
MAIADRKSASDSKGWGFFKLPFRqsgnssnttstsssashqhqnqsnqqVEGSKTHGsssvssvArsllpkrrrlklDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLadadaavaaRKKPPEDTGPRIIGEGLVIDEWVCYLKASELYI
Disordered region (IsUnstruct)
**************WGFFK************************************************************ANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP*************KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL***********************************RIIGEGLVIDEWVCYLKASE***
Disordered Region (DISOPRED)
***************************************************************************KLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP*********KSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF******************************************LVIDEWVCYLKASELYI
Disordered Region (DISEMBL)
***********SKGWGFFKLPFRQ******************************************SLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQ****************DTGPRIIGEGLVIDEWVCYLKASELYI
Disordered Region (DISPRO)
***********SKGWGFFKLPFR********************************************LLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWVCYLKASELYI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWVCYLKASELYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q8VYN2	295	Vesicle-associated protei	yes	no	0.956	0.823	0.630	4e-92
Q8LPQ7	287	Vesicle-associated protei	no	no	0.956	0.846	0.624	5e-77
Q1ECE0	266	Vesicle-associated protei	no	no	0.933	0.890	0.646	1e-74
Q9LVU1	220	Vesicle-associated protei	no	no	0.448	0.518	0.330	7e-09
Q8VZ95	256	Vesicle-associated protei	no	no	0.480	0.476	0.292	7e-09
Q9SHC8	239	Vesicle-associated protei	no	no	0.480	0.510	0.3	1e-08
Q84WW5	239	Vesicle-associated protei	no	no	0.464	0.493	0.296	3e-08
Q9SYC9	571	Vesicle-associated protei	no	no	0.476	0.211	0.282	2e-06
B9DHD7	386	Vesicle-associated protei	no	no	0.456	0.300	0.314	4e-06
P40075	244	Vesicle-associated membra	yes	no	0.275	0.286	0.4	4e-05

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  337 bits (865), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 174/276 (63%), Positives = 199/276 (72%), Gaps = 33/276 (11%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSA--------------------- 38
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 39  ---------SHQHQNQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANKLYFPY 87
                         N  +    G   H   S SVSSVA+S LP +RRLKLDP+ KLYFPY
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEKLYFPY 120

Query: 88  EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 147
           E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PEN
Sbjct: 121 EPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPEN 180

Query: 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEK 207
           NEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  PALEK
Sbjct: 181 NEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEK 240

Query: 208 LKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEW 243
           LKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEW
Sbjct: 241 LKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEW 276

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  287 bits (735), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 168/269 (62%), Positives = 195/269 (72%), Gaps = 26/269 (9%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSAS---------HQHQNQSNQQ-- 49
           MA+ + KS SD + WG FKLPFR S + + + S+SSS +         H +QN  +Q   
Sbjct: 1   MALTEDKSDSDGRRWGKFKLPFRNSNSQAPSASSSSSMATSSSSVTSSHLNQNYIHQSRH 60

Query: 50  --------VEG-SKTHGSS-----SVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRS 95
                   VEG  + H  S     S+SSVARSLLP +RRLKLDP+ KLYFPYE GKQVRS
Sbjct: 61  FQYHGPPVVEGLGQNHHQSAATIPSMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRS 120

Query: 96  AIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQK 155
           AIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFVE PENNEKPM QK
Sbjct: 121 AIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVEPPENNEKPMEQK 180

Query: 156 SRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADA 215
           S  KFKI+S+K+K   DY+PELF+EQKD  + EQ++RVVFL+PE P   +EKLK QLA+A
Sbjct: 181 SGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPNSMMEKLKSQLAEA 240

Query: 216 DAAVAARKKPPED-TGPRIIGEGLVIDEW 243
           DAA  ARKK  E   GP+ IGEGLVIDEW
Sbjct: 241 DAADEARKKASEGIVGPKPIGEGLVIDEW 269

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  279 bits (714), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/252 (64%), Positives = 196/252 (77%), Gaps = 15/252 (5%)

Query: 1   MAIADRKSASDSKGWGFFKL-PFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSS 59
           M I DR++ S  K    F+L PF Q        ST+SS+S Q+ NQ+ +   G++    S
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQR------RSTTSSSSTQNPNQNYRSRHGNRNTDIS 54

Query: 60  SVS-------SVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQ 112
           +VS       SVARSLLP RRRL+LDP++ LYFPYE GKQVRSAIK+KNTSKSH AFKFQ
Sbjct: 55  AVSKPPLTMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQ 114

Query: 113 TTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK-PMYQKSRDKFKIISMKVKADV 171
           TTAPKSC+MRPPG +LAPGES+ ATVFKFVE PENNEK P+ QKS+ KFKI+S+KVK  V
Sbjct: 115 TTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGV 174

Query: 172 DYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGP 231
           +YVPELFDEQKDQ A EQ+LRV+F++ +RP  ALEKLKRQL +A+AAV ARKKPP +TGP
Sbjct: 175 EYVPELFDEQKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGP 234

Query: 232 RIIGEGLVIDEW 243
           R++GEGLVIDEW
Sbjct: 235 RVVGEGLVIDEW 246

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%)

Query: 81  NKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
           ++L F +E  KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I     
Sbjct: 15  DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIR--- 71

Query: 141 FVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPE-LFDEQKDQTAAEQILRVVFLN 197
            V L    E P   + +DKF + S  V    DVD +P+  F +   +T  E  L+V ++ 
Sbjct: 72  -VTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYIT 130

Query: 198 P 198
           P
Sbjct: 131 P 131

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L ++P + L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P    
Sbjct: 23  LTVEPLD-LQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR--- 78

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQIL 191
            +T    V +    E P   + +DKF +  +     V   +  PE+F ++      E  L
Sbjct: 79  -STCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKL 137

Query: 192 RVVFLNPERP 201
           RV ++ P RP
Sbjct: 138 RVTYVAPPRP 147

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L +DP + L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P  S 
Sbjct: 6   LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64

Query: 135 IATVFKFVELPENNEKPMYQKSRDKF---KIISMKVKADVDYVPELFDEQKDQTAAEQIL 191
                  V +    E P   + +DKF    +++       D   E+F ++      E  L
Sbjct: 65  EV----LVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKL 120

Query: 192 RVVFLNPERP 201
           RVV++ P RP
Sbjct: 121 RVVYVAPPRP 130

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 10/128 (7%)

Query: 82  KLYFPYEAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
           +L FP+E  KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   T   
Sbjct: 13  ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT--- 69

Query: 141 FVELPENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL- 196
            V +    E P+  + +DKF + ++ V       + + E+F+++  +   +  LRVV++ 
Sbjct: 70  -VTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIP 128

Query: 197 -NPERPEP 203
            NP  P P
Sbjct: 129 ANPPSPVP 136

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 10/131 (7%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L +DP + + FP E  K+V  ++ + N ++++VAFK +TT  K  ++RP   ++ P  S 
Sbjct: 177 LIIDPVD-VQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSC 235

Query: 135 IATVFKFVELPENNEKPMYQKSRDKF----KIISMKVKADVDYVPELFDEQKDQTAAEQI 190
              V     +    E P   + RDK     K++  +  A  D   E+F ++    A E  
Sbjct: 236 EVLVI----MQALKEAPADMQCRDKLLFQCKVVEPETTAK-DVTSEMFSKEAGHPAEETR 290

Query: 191 LRVVFLNPERP 201
           L+V+++ P +P
Sbjct: 291 LKVMYVTPPQP 301

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 8/124 (6%)

Query: 83  LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
           L F  +  KQ    +++ NT+  +VAFK +TT+PK   +RP   ++AP  +   TV    
Sbjct: 13  LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI--- 69

Query: 143 ELPENNEKPMYQKSRDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP- 198
            +    E P     +DKF I S  V A   D D    +F + + +   E  LRV  + P 
Sbjct: 70  -MQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPS 128

Query: 199 ERPE 202
           + PE
Sbjct: 129 DSPE 132

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 99  IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ-KSR 157
           I N S   +AFK +TTAPK   +RP  A++APGE++   V  F+ L    E+P    K R
Sbjct: 27  ISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FLGL---TEEPAADFKCR 82

Query: 158 DKFKIISMKVKADVD 172
           DKF +I++    D++
Sbjct: 83  DKFLVITLPSPYDLN 97

Targets proteins containing a FFAT motif to endoplasmic reticulum membranes. Regulates phospholipid biosynthesis by modulating the subcellular localization of the transcriptional repressor OPI1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
224116236	235	predicted protein [Populus trichocarpa]	0.767	0.829	0.862	3e-93
357475961	266	Vesicle-associated membrane protein-asso	0.948	0.906	0.733	2e-92
255567425	281	structural molecule, putative [Ricinus c	0.956	0.864	0.725	3e-92
297804004	300	vesicle-associated membrane family prote	0.956	0.81	0.622	8e-91
359495700	264	PREDICTED: vesicle-associated protein 4-	0.948	0.912	0.777	2e-90
18415696	295	vesicle-associated membrane family prote	0.956	0.823	0.630	2e-90
356521293	269	PREDICTED: vesicle-associated protein 4-	0.944	0.892	0.730	4e-90
363806814	268	uncharacterized protein LOC100801956 [Gl	0.948	0.899	0.708	5e-89
147801604	278	hypothetical protein VITISV_011094 [Viti	0.948	0.866	0.735	1e-87
334186769	314	vesicle-associated membrane family prote	0.956	0.773	0.586	3e-86

>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 170/197 (86%), Positives = 181/197 (91%), Gaps = 2/197 (1%)

Query: 49  QVEGSKT--HGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSH 106
           Q+EGS    H S+SVSSVARSLLP RRRLKLDPA+KLYFPYE GKQVRSAI+IKNTSKSH
Sbjct: 20  QIEGSSNPPHPSNSVSSVARSLLPTRRRLKLDPASKLYFPYEPGKQVRSAIRIKNTSKSH 79

Query: 107 VAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMK 166
           VAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFVELPENNEKPM QKS+ KFKI+S+K
Sbjct: 80  VAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVELPENNEKPMEQKSKVKFKIMSLK 139

Query: 167 VKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPP 226
           VK  +DYVPELFDEQKDQ A EQILRV+FL+PERP PALEKLKRQLADADAAV ARKKPP
Sbjct: 140 VKGVMDYVPELFDEQKDQVAIEQILRVIFLDPERPSPALEKLKRQLADADAAVEARKKPP 199

Query: 227 EDTGPRIIGEGLVIDEW 243
           ED GPRIIGEGLVIDEW
Sbjct: 200 EDAGPRIIGEGLVIDEW 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475961|ref|XP_003608266.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|87240479|gb|ABD32337.1| Major sperm protein [Medicago truncatula] gi|355509321|gb|AES90463.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/248 (73%), Positives = 205/248 (82%), Gaps = 7/248 (2%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQ-----VEGSKT 55
           MA+A+ K  S+ K W FFKLPFR S  SS  T++SS  ++ H +  +       +EGS +
Sbjct: 1   MAVAEPKLHSEPKVWNFFKLPFRNSNTSSTNTTSSSVNNNLHHHHHHNPNSNTPLEGSTS 60

Query: 56  HGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA 115
           H S+SVSSVARSLLP RRRLKLDP+NKLYFPYE GKQVRSAI+IKNTSKS+VAFKFQTTA
Sbjct: 61  HTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSNVAFKFQTTA 120

Query: 116 PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVP 175
           PKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP  +KS  KFKI+S+KVK  +DYVP
Sbjct: 121 PKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKP--EKSGLKFKIMSLKVKGSIDYVP 178

Query: 176 ELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIG 235
           ELFDEQKDQ A EQILRVVFL+PERP P LEKLKRQLADADAA+  RKKP ED GP+IIG
Sbjct: 179 ELFDEQKDQVAVEQILRVVFLDPERPSPILEKLKRQLADADAALEERKKPAEDAGPKIIG 238

Query: 236 EGLVIDEW 243
           EGLVIDEW
Sbjct: 239 EGLVIDEW 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567425|ref|XP_002524692.1| structural molecule, putative [Ricinus communis] gi|223536053|gb|EEF37711.1| structural molecule, putative [Ricinus communis]

 Score =  343 bits (881), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 190/262 (72%), Positives = 207/262 (79%), Gaps = 19/262 (7%)

Query: 1   MAIADR----KSASDS-------------KGWGFFKLPFRQS-GNSSNTTSTSSSASHQH 42
           MAIAD     KS SD              K WGFFKLPFR S GN+  ++S +SS+S  H
Sbjct: 1   MAIADHHSNNKSPSDYNNNSYGNSNSNNNKVWGFFKLPFRGSNGNTVPSSSYTSSSSSTH 60

Query: 43  QNQSNQQVEGSKTHGSSSVSSVARS-LLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKN 101
           Q+ +  Q+EGS  H SS+  S     LLP RRRLKLDPA KLYFPYE GKQVRSAIKIKN
Sbjct: 61  QHSNTAQIEGSNLHASSNSVSSVARSLLPTRRRLKLDPATKLYFPYEPGKQVRSAIKIKN 120

Query: 102 TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK 161
           TSKSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP+ QKS+ KFK
Sbjct: 121 TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPVEQKSKVKFK 180

Query: 162 IISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAA 221
           I+S+KV   +DYVPELF+EQKDQ A EQILRVVFL+PERP PALEKLKRQLADADAAV A
Sbjct: 181 IMSLKVNGMMDYVPELFEEQKDQIAMEQILRVVFLDPERPSPALEKLKRQLADADAAVEA 240

Query: 222 RKKPPEDTGPRIIGEGLVIDEW 243
           RKKPPED GPRIIGEGLVIDEW
Sbjct: 241 RKKPPEDAGPRIIGEGLVIDEW 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804004|ref|XP_002869886.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297315722|gb|EFH46145.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (868), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 175/281 (62%), Positives = 200/281 (71%), Gaps = 38/281 (13%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSASHQHQ---------------- 43
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHGNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 44  -------------------NQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANK 82
                              N  +    G   H   S SVSSVA+S LP +RRLKLDP+ K
Sbjct: 61  QHQQHHHHHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEK 120

Query: 83  LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
           LYFPYE GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFV
Sbjct: 121 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFV 180

Query: 143 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 202
           E PENNEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PERP 
Sbjct: 181 EPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERPN 240

Query: 203 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEW 243
           PAL+KLKRQLA+ADAAV ARKKPPE+TGP+IIGEGLVIDEW
Sbjct: 241 PALDKLKRQLAEADAAVEARKKPPEETGPKIIGEGLVIDEW 281

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495700|ref|XP_002275178.2| PREDICTED: vesicle-associated protein 4-2 [Vitis vinifera] gi|297745648|emb|CBI40859.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/247 (77%), Positives = 212/247 (85%), Gaps = 6/247 (2%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQ----NQSNQQVEGSKTH 56
           MA+ D++S SD K WGFFKLPFR  GN++ T S+SS++   H     NQSN QVEGS  H
Sbjct: 1   MAVPDQRSHSDGKVWGFFKLPFR--GNNTITMSSSSTSHSSHLQHHHNQSNMQVEGSNLH 58

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
            S SVSSVARSLLP RRRL+LDP+NKLYFPYE GKQVRSAI+IKNTSKSHVAFKFQTTAP
Sbjct: 59  PSGSVSSVARSLLPTRRRLRLDPSNKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAP 118

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPE 176
           KSCFMRPPGAILAPGESLIATVFKFVE PENNEKPM QKS+ KFKI+S+KVK  +DYVPE
Sbjct: 119 KSCFMRPPGAILAPGESLIATVFKFVEHPENNEKPMEQKSKVKFKIMSLKVKGPMDYVPE 178

Query: 177 LFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGE 236
           +FDE KDQ A EQILRVVFL+ ERP PAL+KLKRQLA+A+AAV ARKKPPED GPRIIGE
Sbjct: 179 MFDELKDQVAVEQILRVVFLDVERPSPALDKLKRQLAEAEAAVEARKKPPEDAGPRIIGE 238

Query: 237 GLVIDEW 243
           GLVIDEW
Sbjct: 239 GLVIDEW 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415696|ref|NP_567627.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|75161506|sp|Q8VYN2.1|VAP42_ARATH RecName: Full=Vesicle-associated protein 4-2; AltName: Full=Plant VAP homolog 4-2; Short=AtPVA42; AltName: Full=VAMP-associated protein 4-2 gi|17979373|gb|AAL49912.1| putative membrane associated protein [Arabidopsis thaliana] gi|20465773|gb|AAM20375.1| putative membrane associated protein [Arabidopsis thaliana] gi|21592907|gb|AAM64857.1| putative membrane associated protein [Arabidopsis thaliana] gi|332659054|gb|AEE84454.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 174/276 (63%), Positives = 199/276 (72%), Gaps = 33/276 (11%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSA--------------------- 38
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 39  ---------SHQHQNQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANKLYFPY 87
                         N  +    G   H   S SVSSVA+S LP +RRLKLDP+ KLYFPY
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEKLYFPY 120

Query: 88  EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 147
           E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PEN
Sbjct: 121 EPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPEN 180

Query: 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEK 207
           NEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  PALEK
Sbjct: 181 NEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEK 240

Query: 208 LKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEW 243
           LKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEW
Sbjct: 241 LKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEW 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521293|ref|XP_003529291.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 184/252 (73%), Positives = 206/252 (81%), Gaps = 12/252 (4%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQV---------E 51
           MA+AD K  S+ K W FFKLPFR S  ++NTT +S++  H H + ++            E
Sbjct: 1   MAVADPKPHSEPKVWNFFKLPFRHSA-ATNTTPSSANLHHLHHHHNHHHHHHNPNNLPLE 59

Query: 52  GSKTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKF 111
           GS +H S+SVSSVARSLLP RRRLKLDP+NKLYFPYE GKQVRSAI+IKNTSKS VAFKF
Sbjct: 60  GSTSHTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSSVAFKF 119

Query: 112 QTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 171
           QTTAPKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP  +KS  KFKI+S+KVK  +
Sbjct: 120 QTTAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKP--EKSGLKFKIMSLKVKGSI 177

Query: 172 DYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGP 231
           DYVPELFDEQKDQ A EQILRVVFL+PERP PALEKL RQLADADAA+ ARKKP ED GP
Sbjct: 178 DYVPELFDEQKDQVAVEQILRVVFLDPERPCPALEKLNRQLADADAALEARKKPAEDAGP 237

Query: 232 RIIGEGLVIDEW 243
           +IIGEGLVIDEW
Sbjct: 238 KIIGEGLVIDEW 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806814|ref|NP_001242542.1| uncharacterized protein LOC100801956 [Glycine max] gi|255640215|gb|ACU20398.1| unknown [Glycine max]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 177/250 (70%), Positives = 204/250 (81%), Gaps = 9/250 (3%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQ-------VEGS 53
           MA+AD K  S+ K W FFKLPFR S  ++ T S+++     H + ++         +EGS
Sbjct: 1   MAVADPKPHSEPKVWNFFKLPFRHSATTNTTPSSANLHHLHHHHHNHHHDPNNNLPLEGS 60

Query: 54  KTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT 113
            ++ S+SVSSVARSLLP RRRLKLDP+NKLYFPYE GKQVRSAI+IKNTSKS+VAFKFQT
Sbjct: 61  TSNTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSNVAFKFQT 120

Query: 114 TAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDY 173
           TAPKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP  +K+  KFK++S+KVK  +DY
Sbjct: 121 TAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKP--EKTGLKFKVMSLKVKGLIDY 178

Query: 174 VPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRI 233
           VPELFDEQKDQ A EQILRVVFL+PERP PALEKL RQLADA AA+ ARKKP ED GP+I
Sbjct: 179 VPELFDEQKDQVAVEQILRVVFLDPERPCPALEKLNRQLADAGAALEARKKPAEDAGPKI 238

Query: 234 IGEGLVIDEW 243
           IGEGLVIDEW
Sbjct: 239 IGEGLVIDEW 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801604|emb|CAN74544.1| hypothetical protein VITISV_011094 [Vitis vinifera]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 192/261 (73%), Positives = 212/261 (81%), Gaps = 20/261 (7%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQ----NQSNQQVEGSKTH 56
           MA+ D++S SD K WGFFKLPFR  GN++ T S+SS++   H     NQSN QVEGS  H
Sbjct: 1   MAVPDQRSHSDGKVWGFFKLPFR--GNNTITMSSSSTSHSSHLQHHHNQSNMQVEGSNLH 58

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
            S SVSSVARSLLP RRRL+LDP+NKLYFPYE GKQVRSAI+IKNTSKSHVAFKFQTTAP
Sbjct: 59  PSGSVSSVARSLLPTRRRLRLDPSNKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAP 118

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPE 176
           KSCFMRPPGAILAPGESLIATVFKFVE PENNEKPM QKS+ KFKI+S+KVK  +DYVPE
Sbjct: 119 KSCFMRPPGAILAPGESLIATVFKFVEHPENNEKPMEQKSKVKFKIMSLKVKGPMDYVPE 178

Query: 177 LFDEQKDQTAAEQILRVVFLNPERPEP--------------ALEKLKRQLADADAAVAAR 222
           +FDE KDQ A EQILRVVFL+ ERP P              AL+KLKRQLA+A+AAV AR
Sbjct: 179 MFDELKDQVAVEQILRVVFLDVERPSPRMPIYEIXPLYPVKALDKLKRQLAEAEAAVEAR 238

Query: 223 KKPPEDTGPRIIGEGLVIDEW 243
           KKPPED GPRIIGEGLVIDEW
Sbjct: 239 KKPPEDAGPRIIGEGLVIDEW 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186769|ref|NP_001190786.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|332659055|gb|AEE84455.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/295 (58%), Positives = 199/295 (67%), Gaps = 52/295 (17%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSA--------------------- 38
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 39  ---------SHQHQNQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANKLYFPY 87
                         N  +    G   H   S SVSSVA+S LP +RRLKLDP+ KLYFP+
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEKLYFPW 120

Query: 88  -------------------EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAIL 128
                              E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAIL
Sbjct: 121 FVSEDLRSIDTSLKFLSFNEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAIL 180

Query: 129 APGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAE 188
           APGE++IATVFKFVE PENNEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + E
Sbjct: 181 APGETIIATVFKFVEPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKE 240

Query: 189 QILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEW 243
           QILRV+FL+PER  PALEKLKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEW
Sbjct: 241 QILRVIFLDPERSNPALEKLKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEW 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.653	0.624	0.730	6.1e-66
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.653	0.712	0.759	1.5e-65
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.653	0.578	0.712	2e-65
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.480	0.554	0.317	4.5e-11
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.488	0.518	0.308	2.3e-10
TAIR|locus:2101766	256	VAP27-1 "VAMP/SYNAPTOBREVIN-AS	0.452	0.449	0.295	1.7e-09
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.464	0.493	0.296	4.2e-09
UNIPROTKB|Q5F419	151	VAPA "Uncharacterized protein"	0.492	0.827	0.284	2e-08
TAIR|locus:2008231	637	AT1G51270 [Arabidopsis thalian	0.484	0.193	0.283	4.2e-07
TAIR|locus:2025585	386	VAP27-2 "vamp/synaptobrevin-as	0.456	0.300	0.314	9.9e-07

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
 Identities = 122/167 (73%), Positives = 141/167 (84%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP++ LYFPYE GKQVRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ AT
Sbjct:    80 DPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFAT 139

Query:   138 VFKFVELPENNEK-PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL 196
             VFKFVE PENNEK P+ QKS+ KFKI+S+KVK  V+YVPELFDEQKDQ A EQ+LRV+F+
Sbjct:   140 VFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFI 199

Query:   197 NPERPEPALEKLKRQLXXXXXXXXXRKKPPEDTGPRIIGEGLVIDEW 243
             + +RP  ALEKLKRQL         RKKPP +TGPR++GEGLVIDEW
Sbjct:   200 DADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEW 246

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 126/166 (75%), Positives = 141/166 (84%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP +KL+FPYE GKQVRSA+KIKN SKSHVAFKFQTTAPKSCFMRPPG ILAPGES+IAT
Sbjct:    49 DPPSKLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIAT 108

Query:   138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
             VFKFVE PENNEKP+ QK + KFKI+S+KVK  ++YVPELFDEQK+Q A EQILRVVFL+
Sbjct:   109 VFKFVEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLD 168

Query:   198 PERPEPALEKLKRQLXXXXXXXXXRKKPPEDTGPRIIGEGLVIDEW 243
              ER  P ++KLKRQL         RKKPPEDTGPRI+GEGLVIDEW
Sbjct:   169 AERQTPQMDKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLVIDEW 214

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 119/167 (71%), Positives = 132/167 (79%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP+ KLYFPYE GKQVRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IAT
Sbjct:   103 DPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIAT 162

Query:   138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
             VFKFVE PENNEKPM QKS  KFKI+S+K+K   DY+PELF+EQKD  + EQ++RVVFL+
Sbjct:   163 VFKFVEPPENNEKPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLD 222

Query:   198 PERPEPALEKLKRQLXXXXXXXXXRKKPPED-TGPRIIGEGLVIDEW 243
             PE P   +EKLK QL         RKK  E   GP+ IGEGLVIDEW
Sbjct:   223 PENPNSMMEKLKSQLAEADAADEARKKASEGIVGPKPIGEGLVIDEW 269

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 41/129 (31%), Positives = 68/129 (52%)

Query:    81 NKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
             ++L F +E  KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I  V  
Sbjct:    15 DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRV-- 72

Query:   141 FVELPENNEKPMYQKSRDKFKIISMKVK--ADVDYVPE-LFDEQKDQTAAEQILRVVFLN 197
                L    E P   + +DKF + S  V    DVD +P+  F +   +T  E  L+V ++ 
Sbjct:    73 --TLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYIT 130

Query:   198 PERPEPALE 206
             P   + + E
Sbjct:   131 PSTTQRSSE 139

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 41/133 (30%), Positives = 66/133 (49%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP + L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P  S  + 
Sbjct:     9 DPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSS--SE 65

Query:   138 VFKFVELPENNEKPMYQKSRDKFK---IISMKVKADVDYVPELFDEQKDQTAAEQILRVV 194
             V   V +    E P   + +DKF    +++       D   E+F ++      E  LRVV
Sbjct:    66 VL--VTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVV 123

Query:   195 FLNPERP-EPALE 206
             ++ P RP  P  E
Sbjct:   124 YVAPPRPPSPVRE 136

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 36/122 (29%), Positives = 60/122 (49%)

Query:    83 LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
             L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P     +T    V
Sbjct:    30 LQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCEVLV 85

Query:   143 ELPENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFLNPE 199
              +    E P   + +DKF +  +     V   +  PE+F ++      E  LRV ++ P 
Sbjct:    86 TMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPP 145

Query:   200 RP 201
             RP
Sbjct:   146 RP 147

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 38/128 (29%), Positives = 68/128 (53%)

Query:    82 KLYFPYEAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
             +L FP+E  KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   TV  
Sbjct:    13 ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTV-- 70

Query:   141 FVELPENNEKPMYQKSRDKFKIISMKVK---ADVDYVPELFDEQKDQTAAEQILRVVFL- 196
                +    E P+  + +DKF + ++ V       + + E+F+++  +   +  LRVV++ 
Sbjct:    71 --TMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIP 128

Query:   197 -NPERPEP 203
              NP  P P
Sbjct:   129 ANPPSPVP 136

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 37/130 (28%), Positives = 61/130 (46%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP   L F       V + +K++N S   V FK +TTAP+   +RP   I+ PG S+I +
Sbjct:    17 DPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVS 76

Query:   138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
             V     L   +  P  +KS+ KF + ++    ++  +  ++ E K     +  LR VF  
Sbjct:    77 VM----LQPFDYDPN-EKSKHKFMVQTIYAPPNISDMEAVWKEAKPDELMDSKLRCVFEM 131

Query:   198 PERPEPALEK 207
             P   +  + K
Sbjct:   132 PNENDKLVSK 141

GO:0005198 "structural molecule activity" evidence=IEA

TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 38/134 (28%), Positives = 66/134 (49%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP + + FP E  K+V  ++ + N ++++VAFK +TT  K  ++RP   ++ P  S    
Sbjct:   180 DPVD-VQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEVL 238

Query:   138 VFKFVELPENNEKPMYQKSRDKF----KIISMKVKADVDYVPELFDEQKDQTAAEQILRV 193
             V     +    E P   + RDK     K++  +  A  D   E+F ++    A E  L+V
Sbjct:   239 VI----MQALKEAPADMQCRDKLLFQCKVVEPETTAK-DVTSEMFSKEAGHPAEETRLKV 293

Query:   194 VFLNPERP-EPALE 206
             +++ P +P  P  E
Sbjct:   294 MYVTPPQPPSPVQE 307

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 39/124 (31%), Positives = 59/124 (47%)

Query:    83 LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
             L F  +  KQ    +++ NT+  +VAFK +TT+PK   +RP   ++AP  +   TV    
Sbjct:    13 LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI--- 69

Query:   143 ELPENNEKPMYQKSRDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP- 198
              +    E P     +DKF I S  V A   D D    +F + + +   E  LRV  + P 
Sbjct:    70 -MQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPS 128

Query:   199 ERPE 202
             + PE
Sbjct:   129 DSPE 132

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VYN2	VAP42_ARATH	No assigned EC number	0.6304	0.9566	0.8237	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__2171__AT4G21450.1 annotation not avaliable (300 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	2e-26
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	1e-05

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 99.0 bits (247), Expect = 2e-26
 Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 5/110 (4%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L +DP + L+F     KQ  S + + N S   VAFK +TT PK   +RP   IL PGES+
Sbjct: 2   LTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESV 61

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 184
             T+ +    P + E    +K  DKF I   +   D     E F      
Sbjct: 62  TITITR---QPFDKEPGDPKK--DKFVIQYTEAPDDAKDAKEAFKRAWKN 106

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           +++ P  +  F      + +    ++N S   V FK +TTAPK   +RP   ++ P  ++
Sbjct: 3   VEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTV 60

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 170
              V   +      E     K RDKF I S +    
Sbjct: 61  EVEV---ILQGLTEEPAPDFKCRDKFLIQSYRFDWR 93

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
KOG0439	218	consensus VAMP-associated protein involved in inos	99.96
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.93
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.88
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.29
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	96.31
PF14646	426	MYCBPAP: MYCBP-associated protein family	93.45
PRK09918	230	putative fimbrial chaperone protein; Provisional	93.11
PRK09926	246	putative chaperone protein EcpD; Provisional	91.09
PRK11385	236	putativi pili assembly chaperone; Provisional	89.74
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	89.41
PRK15299	227	fimbrial chaperone protein StiB; Provisional	89.39
PRK15295	226	fimbrial assembly chaperone SthB; Provisional	89.16
PRK15249	253	fimbrial chaperone protein StbB; Provisional	89.12
PRK15211	229	fimbrial chaperone protein PefD; Provisional	88.71
PRK15192	234	fimbrial chaperone BcfG; Provisional	88.21
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	87.58
PRK15246	233	fimbrial assembly chaperone StbE; Provisional	87.08
PRK15188	228	fimbrial chaperone protein BcfB; Provisional	85.23
PRK15208	228	long polar fimbrial chaperone LpfB; Provisional	84.41
COG3121	235	FimC P pilus assembly protein, chaperone PapD [Cel	83.46
PRK15195	229	fimbrial chaperone protein FimC; Provisional	81.95

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.8e-28  Score=213.22  Aligned_cols=172  Identities=34%  Similarity=0.516  Sum_probs=149.6

Q ss_pred             CCCCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCC
Q 025361           69 LPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENN  148 (254)
Q Consensus        69 ~~~~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~  148 (254)
                      +....+|.++|..+|+|.++..+++.+.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|.+   || ..
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~-~~   78 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QP-FE   78 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---cc-Cc
Confidence            456789999998899999999999999999999999999999999999999999999999999999999988   56 44


Q ss_pred             CCCCCCCCCCeEEEEEEEeCCC-CCchhhhhhccC--CCcceeEEEEEEEeCCCCCCchhHHH---HHhhhhHHHHHHHh
Q 025361          149 EKPMYQKSRDKFKIISMKVKAD-VDYVPELFDEQK--DQTAAEQILRVVFLNPERPEPALEKL---KRQLADADAAVAAR  222 (254)
Q Consensus       149 e~p~~~~~kDKFLIqSv~v~~~-~d~~~elFk~~~--~~~i~e~KLrV~fv~p~~ps~~~e~l---~~~L~ea~~~~~~~  222 (254)
                      ..|.+.+|+|||+||++.++.+ .....++|+..+  +..+.+.+++|.|+.|..+....+..   .++....++...+.
T Consensus        79 ~~P~d~~~r~kF~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (218)
T KOG0439|consen   79 KSPPDFKSRHKFLIQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEAT  158 (218)
T ss_pred             cCchhhcccceEEEEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccc
Confidence            5578899999999999999875 677899999988  78899999999999987765555544   66777777888888


Q ss_pred             cCCCCCC---CCceeeeeeeeeehh
Q 025361          223 KKPPEDT---GPRIIGEGLVIDEWV  244 (254)
Q Consensus       223 ~~~~~~~---~~~~~~~~~~~~~~~  244 (254)
                      +......   .+...++.++++||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~  183 (218)
T KOG0439|consen  159 KEASDGEVCVKSKEFGEKLELKEEL  183 (218)
T ss_pred             cccCcccccchhhhhhccccchhhh
Confidence            7777755   466789999999995

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.93  E-value=1.3e-25  Score=198.03  Aligned_cols=119  Identities=22%  Similarity=0.320  Sum_probs=109.0

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCCC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~~  154 (254)
                      |.++|  .+.|..++..+.++.+-|.|++..+|+||||||+|+.||||||.|+|+|++++.|.|+|   |+..+|+-++.
T Consensus         3 veisp--~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVil---q~l~eEpapdf   77 (242)
T COG5066           3 VEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVIL---QGLTEEPAPDF   77 (242)
T ss_pred             eEecC--ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEe---eccccCCCCCc
Confidence            67778  57788788889999999999999999999999999999999999999999999999999   78889998999


Q ss_pred             CCCCeEEEEEEEeCCCC--CchhhhhhccCCCcceeEEEEEEEeCC
Q 025361          155 KSRDKFKIISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFLNP  198 (254)
Q Consensus       155 ~~kDKFLIqSv~v~~~~--d~~~elFk~~~~~~i~e~KLrV~fv~p  198 (254)
                      +|+||||||++..+.+.  .+..++|....+.-+.++||||+|..-
T Consensus        78 KCrdKFLiqs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvyse~  123 (242)
T COG5066          78 KCRDKFLIQSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYSEE  123 (242)
T ss_pred             cccceeEEEEeccChhhccchHHHHHHhhccccchhhheeEEeecc
Confidence            99999999999997654  446999999988889999999999953

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.88  E-value=3.8e-22  Score=155.49  Aligned_cols=102  Identities=28%  Similarity=0.457  Sum_probs=81.7

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCCC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~~  154 (254)
                      |.|+|.+.|.|.++.++...+.|+|+|.++.+||||||||+|.+|+|+|+.|+|.||+++.|.|++   ++.....  ..
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~---~~~~~~~--~~   76 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF---QPFDFEP--SN   76 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTT--TS
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE---EecccCC--CC
Confidence            789999999999999999999999999999999999999999999999999999999999999998   5543322  12


Q ss_pred             CCCCeEEEEEEEeCCCCC----chhhhhhcc
Q 025361          155 KSRDKFKIISMKVKADVD----YVPELFDEQ  181 (254)
Q Consensus       155 ~~kDKFLIqSv~v~~~~d----~~~elFk~~  181 (254)
                      ..+|||+|+++.++++..    ....+|++.
T Consensus        77 ~~~dkf~I~~~~~~~~~~~~~~~~~~~~~~~  107 (109)
T PF00635_consen   77 KKKDKFLIQSIVVPDNATDPKKDFKQIWKNG  107 (109)
T ss_dssp             TSSEEEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred             CCCCEEEEEEEEcCCCccchhhhHHHHHhcc
Confidence            239999999999977653    355666654

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.29  E-value=7.9e-06  Score=63.15  Aligned_cols=66  Identities=27%  Similarity=0.427  Sum_probs=58.1

Q ss_pred             cEEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEcccC--CCceeecCCceeeCCCCEEEEEEEe
Q 025361           74 RLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTA--PKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        74 lL~IdP~~eL~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTa--Pk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      .|.++|. +|.|-.= .|......|+|+|.+..+..|+|+.-.  ...|.|.|..|+|+||+++.+.|++
T Consensus         3 ~l~v~P~-~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~   71 (102)
T PF14874_consen    3 TLEVSPK-ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTF   71 (102)
T ss_pred             EEEEeCC-EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEE
Confidence            5899997 9999654 477888999999999999999997543  5789999999999999999999998

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=96.31  E-value=0.088  Score=41.96  Aligned_cols=62  Identities=21%  Similarity=0.391  Sum_probs=50.8

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccC----C-----CceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA----P-----KSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa----P-----k~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |.|+|. .+.|....   ....++|+|.++.++.+.+.-..    +     .-|.|-|+.-.|+||++..|.|..
T Consensus         2 i~i~~t-rii~~~~~---~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~   72 (122)
T PF00345_consen    2 IQISPT-RIIFNESQ---RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR   72 (122)
T ss_dssp             EEESSS-EEEEETTS---SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred             EEEccE-EEEEeCCC---CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence            578886 78887532   37899999999999999986553    1     268999999999999999999954

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=93.45  E-value=1.6  Score=42.49  Aligned_cols=121  Identities=14%  Similarity=0.293  Sum_probs=77.7

Q ss_pred             EEecCCCceEeecCCCCeEEEEEE-EEcCCCCeEEEEEccc------------CCCceeecCCceeeCCCCEEEEEEEec
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIK-IKNTSKSHVAFKFQTT------------APKSCFMRPPGAILAPGESLIATVFKF  141 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~Lt-L~N~S~~~VAFKVKTT------------aPk~Y~VRP~~GiL~PgeS~~I~Vtl~  141 (254)
                      ..+.+.-.|.|.-.++......|. |.|.+...|-|.-+--            ....|+.....|+|.||++..+.|++ 
T Consensus       231 ~~~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F-  309 (426)
T PF14646_consen  231 PEVSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMF-  309 (426)
T ss_pred             CccCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEE-
Confidence            444555589999999987777777 9999999999884322            24679999999999999999999998 


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCCCCchhHHHHHhhhhHH
Q 025361          142 VELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADAD  216 (254)
Q Consensus       142 v~qp~~~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~~ps~~~e~l~~~L~ea~  216 (254)
                        +|...     ...++...+..-         +.+|.    .....-+|..+-+++..-....+.+++.|+.-.
T Consensus       310 --~s~~~-----Gif~E~W~L~t~---------P~l~~----~~~l~v~L~G~~~~~~~~~~~~~~~~~~l~~k~  364 (426)
T PF14646_consen  310 --KSRKV-----GIFKERWELRTF---------PPLFG----GASLTVRLHGVCTPPDEYLDKRKMLEEELARKE  364 (426)
T ss_pred             --eCCCc-----eEEEEEEEEEEe---------ccccC----CCceEEEEEEEEcCchHhHHHHHHHHHHHHHHH
Confidence              44321     223444444442         22222    112345666666555333334455555554433

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=93.11  E-value=3.2  Score=37.33  Aligned_cols=108  Identities=16%  Similarity=0.147  Sum_probs=66.3

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCC-----CceeecCCceeeCCCCEEEEEEEecccCCCCC
Q 025361           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP-----KSCFMRPPGAILAPGESLIATVFKFVELPENN  148 (254)
Q Consensus        74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaP-----k~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~  148 (254)
                      -|.+.|. .+.|...   +...+++|+|.++.++.........     .-|.|.|+.-.|+||+...|.|.+.  .    
T Consensus        25 ~v~l~~t-Rvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~--~----   94 (230)
T PRK09918         25 GMVPETS-VVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILK--S----   94 (230)
T ss_pred             eEEEccE-EEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEEC--C----
Confidence            3677775 7777643   3368999999998876655533211     3599999999999999999999872  1    


Q ss_pred             CCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCC
Q 025361          149 EKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE  199 (254)
Q Consensus       149 e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~  199 (254)
                      ..|.|.  ---|.+....+++..+.      +..=+.....++++-|-+..
T Consensus        95 ~lp~dr--Es~f~l~v~~IP~~~~~------~~~l~ia~r~~iklfyRP~~  137 (230)
T PRK09918         95 GSPLNT--EHLLRVSFEGVPPKPGG------KNKVVMPIRQDLPVLIQPAA  137 (230)
T ss_pred             CCCCCe--eEEEEEEEEEcCCCCCC------CCEEEEEEEeEEEEEEeCCC
Confidence            112222  12355555556543221      11112334556777776544

>PRK09926 putative chaperone protein EcpD; Provisional

Probab=91.09  E-value=4.6  Score=36.74  Aligned_cols=63  Identities=6%  Similarity=0.185  Sum_probs=48.1

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCC----------ceeecCCceeeCCCCEEEEEEEe
Q 025361           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPK----------SCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk----------~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      -|.|+|. .+.|+...   -..+|+|.|.++.++.--.-....+          -|.|.|+.-.|+||+...|.|.+
T Consensus        26 ~i~l~~T-RvI~~~~~---~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~   98 (246)
T PRK09926         26 DIVISGT-RIIYKSDQ---KDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMY   98 (246)
T ss_pred             eEEeCce-EEEEeCCC---ceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEe
Confidence            4788886 77787532   3689999999988766554332111          39999999999999999999997

>PRK11385 putativi pili assembly chaperone; Provisional

Probab=89.74  E-value=12  Score=34.05  Aligned_cols=61  Identities=20%  Similarity=0.421  Sum_probs=45.6

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcc--c------------CCCceeecCCceeeCCCCEEEEEEE
Q 025361           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT--T------------APKSCFMRPPGAILAPGESLIATVF  139 (254)
Q Consensus        74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKT--T------------aPk~Y~VRP~~GiL~PgeS~~I~Vt  139 (254)
                      -|.+++. .+.|+..   ....+|+|.|.++.+  |=|++  .            ...-|.|.|+.-.|+||+...+.|.
T Consensus        27 ~v~l~~T-RvIy~~~---~~~~sv~l~N~~~~p--~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi  100 (236)
T PRK11385         27 GVVVGGT-RFIFPAD---RESISILLTNTSQES--WLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLL  100 (236)
T ss_pred             eEEeCce-EEEEcCC---CceEEEEEEeCCCCc--EEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEE
Confidence            3667775 7777643   236899999999876  44444  1            1124999999999999999999999


Q ss_pred             e
Q 025361          140 K  140 (254)
Q Consensus       140 l  140 (254)
                      +
T Consensus       101 ~  101 (236)
T PRK11385        101 R  101 (236)
T ss_pred             E
Confidence            7

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=89.41  E-value=1.4  Score=29.87  Aligned_cols=43  Identities=28%  Similarity=0.176  Sum_probs=34.1

Q ss_pred             EEEEcCCCCe-EEEEEcccCCCceeecCCceeeCCCCEEEEEEEe
Q 025361           97 IKIKNTSKSH-VAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        97 LtL~N~S~~~-VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      ++|+|+++.+ +..+|+|+ =+-..+......|+||++..|.|++
T Consensus         2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~y   45 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVTY   45 (45)
T ss_pred             EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEEC
Confidence            5799999865 45667665 4667777888999999999999873

>PRK15299 fimbrial chaperone protein StiB; Provisional

Probab=89.39  E-value=7.3  Score=34.95  Aligned_cols=111  Identities=10%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccC--------CCceeecCCceeeCCCCEEEEEEEecccCC
Q 025361           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA--------PKSCFMRPPGAILAPGESLIATVFKFVELP  145 (254)
Q Consensus        74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa--------Pk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp  145 (254)
                      -|.++|. .+.|....   -..+|+|.|.++.++.-..-...        ..-|.|.|+.-.|+||+...|.|...   .
T Consensus        23 ~i~l~~T-Rvi~~~~~---~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~---~   95 (227)
T PRK15299         23 GINIGTT-RVIFHGDA---KDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT---G   95 (227)
T ss_pred             eEEECce-EEEEeCCC---cEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC---C
Confidence            3777776 77776542   36899999998875444332111        12499999999999999999999872   1


Q ss_pred             CCCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCC
Q 025361          146 ENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE  199 (254)
Q Consensus       146 ~~~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~  199 (254)
                      .  ..|.|.  -.-|.+....+++..+. ..   +..-+.....+|++.|-++.
T Consensus        96 ~--~lP~Dr--Eslf~lnv~eIP~~~~~-~~---~n~l~iavr~riKLfyRP~~  141 (227)
T PRK15299         96 G--NLPEDR--ESLYWLDIKSIPSSNPD-NK---HNTLMLAVKAEFKLIYRPKA  141 (227)
T ss_pred             C--CCCCcc--eEEEEEEeEecCCCCcc-cc---cceEEEEEeeeeeEEEcccc
Confidence            1  112222  12355555555543211 00   00112345667777776543

>PRK15295 fimbrial assembly chaperone SthB; Provisional

Probab=89.16  E-value=8.9  Score=34.52  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=45.5

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcc----cC-----CCceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT----TA-----PKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKT----Ta-----Pk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |.+++. .+.|....   ....|+|.|.++.+  |-|++    ..     ..-|.|.|+.-.|+||+...|.|.+
T Consensus        21 i~l~~T-RvI~~~~~---~~~si~i~N~~~~p--~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~   89 (226)
T PRK15295         21 IVVGGT-RLVFDGNN---DESSINVENKDSKA--NLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIR   89 (226)
T ss_pred             EEeCce-EEEEeCCC---ceeEEEEEeCCCCc--EEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEE
Confidence            677775 77776533   36899999998875  44553    11     1249999999999999999999987

>PRK15249 fimbrial chaperone protein StbB; Provisional

Probab=89.12  E-value=10  Score=34.78  Aligned_cols=62  Identities=15%  Similarity=0.251  Sum_probs=46.2

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccC------C-----CceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA------P-----KSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa------P-----k~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |.|+|. .+.|....   -...|+|.|.++.++....-+.+      |     .-|.|.|+.--|+||+...|.|.+
T Consensus        30 l~l~~T-Rviy~~~~---~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~  102 (253)
T PRK15249         30 VTILGS-RIIYPSTA---SSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIY  102 (253)
T ss_pred             EEeCce-EEEEeCCC---cceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEE
Confidence            778886 77776433   36799999998876554432211      1     139999999999999999999997

>PRK15211 fimbrial chaperone protein PefD; Provisional

Probab=88.71  E-value=9.2  Score=34.65  Aligned_cols=62  Identities=15%  Similarity=0.182  Sum_probs=45.3

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcc---c---CCCceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT---T---APKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKT---T---aPk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |.+++. .+.|+...   -..+|+|.|.++.++.-....   .   ...-|.|.|+.-.|+||+...|.|.+
T Consensus        24 v~l~~T-RvIy~~~~---~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~   91 (229)
T PRK15211         24 FVLNGT-RFIYDEGR---KNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMK   91 (229)
T ss_pred             EEECce-EEEEcCCC---ceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            677775 77776432   368999999998764433221   1   11249999999999999999999997

>PRK15192 fimbrial chaperone BcfG; Provisional

Probab=88.21  E-value=14  Score=33.63  Aligned_cols=60  Identities=12%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEccc----------C----CCceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT----------A----PKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT----------a----Pk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |.++.. .+.|+..   .-..+|+|.|.++.+  |=|++.          .    ..-|.|.|+.-.|+||+...+.|..
T Consensus        24 i~l~~T-RvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~   97 (234)
T PRK15192         24 VVIGGT-RFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVY   97 (234)
T ss_pred             EEeCce-EEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEE
Confidence            555654 6666542   236799999999875  555551          1    1139999999999999999999997

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=87.58  E-value=2.4  Score=33.65  Aligned_cols=67  Identities=15%  Similarity=0.274  Sum_probs=39.0

Q ss_pred             EEecCCCceEee-cCCCC-eEEEEEEEEcCCCCeEEEEEcccCCCceee-cCCce-eeCCCCEEEEEEEec
Q 025361           75 LKLDPANKLYFP-YEAGK-QVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGA-ILAPGESLIATVFKF  141 (254)
Q Consensus        75 L~IdP~~eL~F~-~e~~k-~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~V-RP~~G-iL~PgeS~~I~Vtl~  141 (254)
                      +.+-+..-..|. ...|. +-...|+|.|.+..+..|.|+...+..+.+ .|... -|+||++..+.|++.
T Consensus        13 ~~V~rdr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~   83 (118)
T PF11614_consen   13 LNVLRDRGPLYRELSDGSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT   83 (118)
T ss_dssp             EEEEE-SS---------SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred             EEEEecCCCcEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence            444444333344 33343 456899999999999999999888778888 66555 489999999988873

>PRK15246 fimbrial assembly chaperone StbE; Provisional

Probab=87.08  E-value=21  Score=32.35  Aligned_cols=111  Identities=13%  Similarity=0.222  Sum_probs=65.1

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcc---c-----CC----CceeecCCceeeCCCCEEEEEEEecc
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT---T-----AP----KSCFMRPPGAILAPGESLIATVFKFV  142 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKT---T-----aP----k~Y~VRP~~GiL~PgeS~~I~Vtl~v  142 (254)
                      |.|++. .+.|+..   ....+|+|.|.++.+  |-|++   .     .|    .-|.|.|+.-.|+||+...|.|.+. 
T Consensus        12 v~l~~T-RvI~~~~---~~~~sv~l~N~~~~p--~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~-   84 (233)
T PRK15246         12 VNIDRT-RIIFASD---DVAQSLTLSNDNTTP--MLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS-   84 (233)
T ss_pred             EEECce-EEEEcCC---CceEEEEEEeCCCCc--EEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC-
Confidence            667775 7777653   336899999999875  44443   1     11    1499999999999999999999972 


Q ss_pred             cCCCCCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCC
Q 025361          143 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE  199 (254)
Q Consensus       143 ~qp~~~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~  199 (254)
                      .  . ...|.|.  ---|-+....+++..+....  .+..-+.....+|++-|-+..
T Consensus        85 ~--~-~~LP~DR--ESlf~lnv~~IP~~~~~~~~--~~~~l~iair~rIKlFyRP~~  134 (233)
T PRK15246         85 S--R-QQLATDR--ESLFWLNIYQIPPVTQDIKN--HPRKLVLPLRLRLKILIRPTG  134 (233)
T ss_pred             C--C-CCCCCCc--eEEEEEEEEEcCCCCccccc--ccceEEEEeeeEEEEEECCcc
Confidence            1  0 1112221  12355555666543221000  000112345667777776554

>PRK15188 fimbrial chaperone protein BcfB; Provisional

Probab=85.23  E-value=22  Score=32.31  Aligned_cols=63  Identities=16%  Similarity=0.305  Sum_probs=44.8

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEE-EE-EcccCC---CceeecCCceeeCCCCEEEEEEEe
Q 025361           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVA-FK-FQTTAP---KSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~-~VA-FK-VKTTaP---k~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      -|.+++. .+.|+..   .-..+++|+|.++. +.. .. |.....   .-|.|.|+.-.|+||+...|.|..
T Consensus        28 gi~l~~T-RvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~   96 (228)
T PRK15188         28 GIALGAT-RVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMY   96 (228)
T ss_pred             eEEECcE-EEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            4777776 7777653   23689999999864 333 21 111111   249999999999999999999997

>PRK15208 long polar fimbrial chaperone LpfB; Provisional

Probab=84.41  E-value=20  Score=32.22  Aligned_cols=63  Identities=13%  Similarity=0.267  Sum_probs=44.6

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEE-EE-EcccCC---CceeecCCceeeCCCCEEEEEEEe
Q 025361           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVA-FK-FQTTAP---KSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~-~VA-FK-VKTTaP---k~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      -|.++|. .+.|....   -...|+|.|.+++ ++. +. |.....   .-|.|.|+.-.|+||+...|.|..
T Consensus        22 gv~l~~T-RvI~~~~~---~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~   90 (228)
T PRK15208         22 GVALSST-RVIYDGSK---KEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVN   90 (228)
T ss_pred             cEEeCce-EEEEeCCC---ceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEE
Confidence            3777886 77776532   3689999999864 333 22 111111   139999999999999999999987

>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=83.46  E-value=34  Score=30.90  Aligned_cols=112  Identities=12%  Similarity=0.185  Sum_probs=71.7

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEccc-------CCCceeecCCceeeCCCCEEEEEEEecccCCCC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-------APKSCFMRPPGAILAPGESLIATVFKFVELPEN  147 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT-------aPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~  147 (254)
                      +.+++. .+.|+...   -...|+|.|.++.++.-.+---       ...-|-|.|+.=.|+||+...|.|.+.   .. 
T Consensus        29 v~i~~T-RiI~~~~~---k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~---~~-  100 (235)
T COG3121          29 VVLGGT-RIIYPAGD---KETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYT---GN-  100 (235)
T ss_pred             EEecce-EEEEeCCC---ceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEec---CC-
Confidence            566665 66666443   3689999998888888885433       234599999999999999999999982   21 


Q ss_pred             CCCCCCCCCCCeEEEEEEEeCCCC-CchhhhhhccCCCcceeEEEEEEEeCCCCC
Q 025361          148 NEKPMYQKSRDKFKIISMKVKADV-DYVPELFDEQKDQTAAEQILRVVFLNPERP  201 (254)
Q Consensus       148 ~e~p~~~~~kDKFLIqSv~v~~~~-d~~~elFk~~~~~~i~e~KLrV~fv~p~~p  201 (254)
                      . .|.|.  -.-|.+....+++.. +....   + .-+.....+|++-|-++.-+
T Consensus       101 ~-lP~dr--Eslf~lnv~eIPp~~~~~~~~---n-~lq~a~r~riKlf~RP~~l~  148 (235)
T COG3121         101 K-LPADR--ESLFRLNVDEIPPKSKDDKGP---N-VLQLALRSRIKLFYRPAGLA  148 (235)
T ss_pred             C-CCCCc--eeEEEEEeeecCCCCcccCCc---c-eEEEEeeeeeeEEECcccCC
Confidence            1 12222  345666666665433 11010   0 01345677888888876543

>PRK15195 fimbrial chaperone protein FimC; Provisional

Probab=81.95  E-value=30  Score=31.21  Aligned_cols=61  Identities=16%  Similarity=0.368  Sum_probs=44.3

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEEcc----cC---CCceeecCCceeeCCCCEEEEEEEe
Q 025361           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQT----TA---PKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~-~VAFKVKT----Ta---Pk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      -|.+++. .+.|.....   ...++|.|.++. +..  |++    ..   ..-|.|.|+.--|+||+...|.|..
T Consensus        26 gi~i~~T-RvIy~~~~~---~~si~l~N~~~~~~~L--vQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~   94 (229)
T PRK15195         26 GIALGAT-RVIYPADAK---QTSLAIRNSHTNERYL--VNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIY   94 (229)
T ss_pred             eEEECCe-EEEEeCCCc---eEEEEEEeCCCCccEE--EEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            3677775 777764333   489999999864 333  442    11   1259999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
2rr3_A	130	Solution Structure Of The Complex Between Human Vap		5e-05
3ikk_A	127	Crystal Structure Analysis Of Msp Domain Length = 1		6e-05
2cri_A	147	Solution Structure Of The Msp Domain Of Mouse Vamp-		8e-05
1z9o_A	128	1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp		2e-04
1z9l_A	128	1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp		3e-04

>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP   L F       V + +K++N S   V FK +TTAP+   +RP   I+ PG ++  +
Sbjct: 13  DPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVS 72
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
           V     L   +  P  +KS+ KF + ++    +   +  ++ E K     +  LR VF  
Sbjct: 73  VM----LQPFDYDP-NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEM 127
Query: 198 PE 199
           P 
Sbjct: 128 PN 129

>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           +P ++L F       V + +K+ N +  +V FK +TTAP+   +RP   I+  G S+  +
Sbjct: 13  EPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVS 72
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 195
           V     L   +  P  +KS+ KF + SM    D   +  ++ E K +   +  LR VF
Sbjct: 73  VM----LQPFDYDP-NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 125

>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP + L F       V + +K++N S   V FK +TTAP+   +RP   I+ PG  +  +
Sbjct: 18  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVS 77
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
           V     L   +  P  +KS+ KF + ++    ++  +  ++ E K     +  LR VF  
Sbjct: 78  VM----LQPFDYDP-NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEM 132
Query: 198 PE 199
           P 
Sbjct: 133 PN 134

>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP + L F       V + +K++N S   V FK +TTAP+   +RP   ++ PG  +  +
Sbjct: 14  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVS 73
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 195
           V     L   +  P  +KS+ KF + ++    ++  +  ++ E K     +  LR VF
Sbjct: 74  VM----LQPFDYDP-NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 126

>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP + L F       V + +K++N S   V FK +TTAP+   +RP   ++ PG   I T
Sbjct: 14  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGS--IVT 71
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 195
           V   V L   +  P  +KS+ KF + ++    ++     ++ E K     +  LR VF
Sbjct: 72  V--SVXLQPFDYDP-NEKSKHKFXVQTIFAPPNISDXEAVWKEAKPDELXDSKLRCVF 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
2cri_A	147	Vesicle-associated membrane protein-associated pro	6e-35
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	3e-31
1z9l_A	128	Vesicle-associated membrane protein-associated pro	6e-31
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	3e-22
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	3e-11
1row_A	109	SSP-19, MSP-domain protein like family member; bet	6e-08
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	4e-04

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score =  121 bits (304), Expect = 6e-35
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 62  SSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM 121
           SS +  +    + L LDP + L F       V + +K++N S   V FK +TTAP+   +
Sbjct: 2   SSGSSGMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCV 61

Query: 122 RPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQ 181
           RP   I+ PG            + +  +    +KS+ KF + ++    ++  +  ++ E 
Sbjct: 62  RPNSGIIDPGSI-----VTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEA 116

Query: 182 KDQTAAEQILRVVFLNPERPEPALEKLK 209
           K     +  LR VF  P   +   +   
Sbjct: 117 KPDELMDSKLRCVFEMPNENDKLNDSGP 144

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score =  112 bits (280), Expect = 3e-31
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
           GSS  S      + K   L + PA +LYF      + ++ I + N +K+ VAFK +TTAP
Sbjct: 1   GSSGSSGKKPLSVFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAP 60

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVP- 175
           +   ++P  +   PG S        +++  +    +   ++D+F I++ +++      P 
Sbjct: 61  EKYRVKPSNSSCDPGAS--------IDIIVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPA 112

Query: 176 ---ELFDEQKDQTAAEQILRVVFLNPERPEP 203
              + + E       E  LR   +   +P  
Sbjct: 113 ELSQFWKEVPRNKVMEHRLRCHTVESSKPNS 143

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score =  110 bits (276), Expect = 6e-31
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 70  PKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILA 129
              + L LDP + L F       V + +K++N S   V FK +TTAP+   +RP   ++ 
Sbjct: 6   KHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVID 65

Query: 130 PGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQ 189
           PG  +  +V       +  +    +KS+ KF + ++    ++  +  ++ E K     + 
Sbjct: 66  PGSIVTVSVM-----LQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDS 120

Query: 190 ILRVVF 195
            LR VF
Sbjct: 121 KLRCVF 126

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 87.6 bits (217), Expect = 3e-22
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 65  ARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPP 124
           A+S+ P    +   P+ K+ F      +    IKI N     + +  +TT  +   + PP
Sbjct: 1   AQSVPPGD--INTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPP 58

Query: 125 GAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPELFDEQK 182
             +L P E ++  V          +      + D+  I        A   +  E F  Q 
Sbjct: 59  CGVLDPKEKVLMAVSCDTFNAATED-----LNNDRITIEWTNTPDGAAKQFRREWF--QG 111

Query: 183 DQTAAEQILRVVF 195
           D     + L + +
Sbjct: 112 DGMVRRKNLPIEY 124

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           + +DP     +P   G        I + S S +AFK +++  +   +RP    +      
Sbjct: 11  INVDPP-TGNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 66

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 184
              + +          P      DK  I   +V A+       F     Q
Sbjct: 67  KLDINR---------LPG-PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ 106

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 14/110 (12%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L  DP      P        S  K+ N     + FK +++      + P    + P  S 
Sbjct: 3   LTADPPA-CTVPAAGVS---STHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 58

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 184
              + +              K  DK  +      AD       F      
Sbjct: 59  DVVITR---------TAGAPK-EDKLVVHFASAPADATDAQAAFVAVAPA 98

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 74  RLKLDPANKLYFPYEAGKQVRSA-IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
           R  LD  +KL F     K      + ++N    +  F  +T  P S    P    L  GE
Sbjct: 23  RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIE--PAIGTLNVGE 80

Query: 133 SLIATV 138
           S+   V
Sbjct: 81  SMQLEV 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
2cri_A	147	Vesicle-associated membrane protein-associated pro	100.0
1z9l_A	128	Vesicle-associated membrane protein-associated pro	100.0
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	100.0
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.96
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.95
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.94
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.03
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.75
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	97.59
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	97.26
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	95.31
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	94.51
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	92.31
2xg5_A	218	PAPD, chaperone protein PAPD; chaperone, chaperone	87.47
2co7_B	221	SAFB chaperone, putative fimbriae assembly chapero	83.62
1l4i_A	206	SFAE protein; periplasmic chaperone, immunoglobuli	82.69
4djm_A	239	DRAB; chaperone, PILI; 2.52A {Escherichia coli}	80.39

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=100.00  E-value=2.6e-34  Score=239.05  Aligned_cols=125  Identities=28%  Similarity=0.463  Sum_probs=114.3

Q ss_pred             CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCC
Q 025361           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (254)
Q Consensus        71 ~~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~  150 (254)
                      ..++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|+|   ++...+ 
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~-   86 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD-   86 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC-
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC-
Confidence            4678999998899999999999999999999999999999999999999999999999999999999999   665432 


Q ss_pred             CCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCC
Q 025361          151 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER  200 (254)
Q Consensus       151 p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~~  200 (254)
                       ++++|+|||+||++.++++.+++.++|++..+..++++||||+|+.|..
T Consensus        87 -p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~  135 (147)
T 2cri_A           87 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNE  135 (147)
T ss_dssp             -TTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCC
T ss_pred             -ccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCC
Confidence             3578999999999999988777899999998889999999999987753

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=100.00  E-value=1.6e-33  Score=228.56  Aligned_cols=121  Identities=27%  Similarity=0.457  Sum_probs=111.2

Q ss_pred             CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCC
Q 025361           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (254)
Q Consensus        71 ~~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~  150 (254)
                      ..++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|++   ++.... 
T Consensus         7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~-   82 (128)
T 1z9l_A            7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD-   82 (128)
T ss_dssp             CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC-
T ss_pred             CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC-
Confidence            4578999998899999999999999999999999999999999999999999999999999999999999   665332 


Q ss_pred             CCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEe
Q 025361          151 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL  196 (254)
Q Consensus       151 p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv  196 (254)
                       ++.+|+|||+||++.++++.+++.++|++.++..++++||||+|.
T Consensus        83 -p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~  127 (128)
T 1z9l_A           83 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE  127 (128)
T ss_dssp             -TTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred             -cccccCCEEEEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence             357899999999999998877789999999888999999999995

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=100.00  E-value=1.3e-33  Score=236.77  Aligned_cols=129  Identities=24%  Similarity=0.356  Sum_probs=114.2

Q ss_pred             CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCC
Q 025361           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (254)
Q Consensus        71 ~~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~  150 (254)
                      +.++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|+|   |+.. + 
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~-~-   89 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGL-T-   89 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSS-C-
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCcc-c-
Confidence            5678999999899999999999999999999999999999999999999999999999999999999999   5543 2 


Q ss_pred             CCCCCCCCeEEEEEEEeC--CCC--CchhhhhhccCCCcceeEEEEEEEeCC-CCCCchhHH
Q 025361          151 PMYQKSRDKFKIISMKVK--ADV--DYVPELFDEQKDQTAAEQILRVVFLNP-ERPEPALEK  207 (254)
Q Consensus       151 p~~~~~kDKFLIqSv~v~--~~~--d~~~elFk~~~~~~i~e~KLrV~fv~p-~~ps~~~e~  207 (254)
                         .+|+|||+||++.++  ++.  +++.++|++..+..++++||||+|+++ ++||+++++
T Consensus        90 ---~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g  148 (152)
T 1wic_A           90 ---VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSG  148 (152)
T ss_dssp             ---CCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCC
T ss_pred             ---CCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccccC
Confidence               478999999999998  443  357899999988899999999999976 455656543

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.96  E-value=1.5e-29  Score=205.79  Aligned_cols=118  Identities=18%  Similarity=0.259  Sum_probs=102.2

Q ss_pred             CCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCC
Q 025361           72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP  151 (254)
Q Consensus        72 ~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p  151 (254)
                      ...|.++|.++|.|++++++++++.|+|+|+|+.+||||||||+|++|||||++|+|+||+++.|.|++   |+...++ 
T Consensus         6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~-   81 (126)
T 1msp_A            6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAAT-   81 (126)
T ss_dssp             CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGG-
T ss_pred             CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCC-
Confidence            458999999999999999999999999999999999999999999999999999999999999999999   6655432 


Q ss_pred             CCCCCCCeEEEEEEEeCCCC--CchhhhhhccCCCcceeEEEEEEEe
Q 025361          152 MYQKSRDKFKIISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFL  196 (254)
Q Consensus       152 ~~~~~kDKFLIqSv~v~~~~--d~~~elFk~~~~~~i~e~KLrV~fv  196 (254)
                      . ...+|||+||++.++++.  |+..+||.. ++ .+..++|+|.|.
T Consensus        82 ~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~~-d~-~~~~k~L~V~Yn  125 (126)
T 1msp_A           82 E-DLNNDRITIEWTNTPDGAAKQFRREWFQG-DG-MVRRKNLPIEYN  125 (126)
T ss_dssp             S-CCSSCEEEEEEEECCTTCCSSCCTHHHHS-SS-CCEEEEEEEEEE
T ss_pred             C-ccCCCEEEEEEEECCCCcchhhhHHhhcC-CC-ceEEEEEEEEec
Confidence            2 345999999999999875  565566643 33 578999999995

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.95  E-value=3.6e-27  Score=188.32  Aligned_cols=104  Identities=17%  Similarity=0.198  Sum_probs=91.2

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCCC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~~  154 (254)
                      |.|+|. +|.|.++.+   .+.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|++   |+.       .
T Consensus         3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~   68 (109)
T 1row_A            3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A   68 (109)
T ss_dssp             CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred             EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------C
Confidence            789998 699998743   69999999999999999999999999999999999999999999999   542       3


Q ss_pred             CCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 025361          155 KSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  194 (254)
Q Consensus       155 ~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~  194 (254)
                      .++|||+||++.++++..++.++|++...  ..+.+|++.
T Consensus        69 ~~~dKflvq~~~~~~~~~d~~~~fk~~~~--~g~~~i~l~  106 (109)
T 1row_A           69 PKEDKLVVHFASAPADATDAQAAFVAVAP--AGTVTIPMS  106 (109)
T ss_dssp             CEEEEEEEEEEECCTTCSCHHHHHTTCCC--CEEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCCCCHHHHhhcCCC--CceEEEEEE
Confidence            47999999999998877678999998755  356677664

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.94  E-value=2.1e-26  Score=186.15  Aligned_cols=105  Identities=22%  Similarity=0.318  Sum_probs=92.8

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCC
Q 025361           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY  153 (254)
Q Consensus        74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~  153 (254)
                      ++.++|. +|.|+++.|   ++.|+|+|+++.+||||||||+|+.|||||+.|+|+||++++|.|++   |+.       
T Consensus        10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~-------   75 (116)
T 1m1s_A           10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG-------   75 (116)
T ss_dssp             SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC-------
T ss_pred             eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC-------
Confidence            5889997 999998754   89999999999999999999999999999999999999999999999   543       


Q ss_pred             CCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 025361          154 QKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  194 (254)
Q Consensus       154 ~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~  194 (254)
                      ..++|||+||++.++++..++.++|++...  ..+.+|++.
T Consensus        76 ~~k~DKflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~  114 (116)
T 1m1s_A           76 PPKEDKIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI  114 (116)
T ss_dssp             CSCEEEEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence            246999999999999877667999999765  477788764

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.03  E-value=2.1e-05  Score=62.01  Aligned_cols=78  Identities=19%  Similarity=0.301  Sum_probs=60.6

Q ss_pred             EEecCCCceEeecCC-CCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCC
Q 025361           75 LKLDPANKLYFPYEA-GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY  153 (254)
Q Consensus        75 L~IdP~~eL~F~~e~-~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~  153 (254)
                      |.+ | +.|.|..-. +......|.|+|.++.++.|++++.  .-|.|.|..|.|+||+++.|.|+.   .|...     
T Consensus        26 l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F---~P~~~-----   93 (122)
T 2ys4_A           26 LDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEF---EPQSV-----   93 (122)
T ss_dssp             CCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEE---CCSSS-----
T ss_pred             ECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEE---EcCCC-----
Confidence            444 5 488886553 6678899999999999999999985  469999999999999999999998   55431     


Q ss_pred             CCCCCeEEEEE
Q 025361          154 QKSRDKFKIIS  164 (254)
Q Consensus       154 ~~~kDKFLIqS  164 (254)
                      ......+.|..
T Consensus        94 g~~~~~l~v~~  104 (122)
T 2ys4_A           94 GDHSGRLIVCY  104 (122)
T ss_dssp             BCCCCBCEEEE
T ss_pred             ccEEEEEEEEE
Confidence            33455555543

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.75  E-value=0.00014  Score=59.35  Aligned_cols=68  Identities=16%  Similarity=0.226  Sum_probs=57.1

Q ss_pred             CcEEecCCCceEeec-CCCCeEEEEEEEEcCCCCeEEEEEccc------CCCceeecCCceeeCCCCEEEEEEEec
Q 025361           73 RRLKLDPANKLYFPY-EAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKF  141 (254)
Q Consensus        73 ~lL~IdP~~eL~F~~-e~~k~~~s~LtL~N~S~~~VAFKVKTT------aPk~Y~VRP~~GiL~PgeS~~I~Vtl~  141 (254)
                      .-+.+++. .|.|-. .+++..+..|+|+|++.-+.-|++...      .+.-+.|.|..|.|.||+++.|.|+++
T Consensus        25 P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~   99 (140)
T 3qbt_B           25 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY   99 (140)
T ss_dssp             CCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred             CceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence            45888886 999963 356778999999999999999999753      334588999999999999999999985

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.59  E-value=0.00023  Score=54.40  Aligned_cols=67  Identities=10%  Similarity=0.128  Sum_probs=56.3

Q ss_pred             CcEEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEcccCC---CceeecCCceeeCCCCEEEEEEEe
Q 025361           73 RRLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAP---KSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        73 ~lL~IdP~~eL~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaP---k~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      ..+.+++. .|.|-.- .+......++|+|+++.++.|++.....   ..|.+.|..|.|+||++..|.|++
T Consensus         8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f   78 (112)
T 2e6j_A            8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF   78 (112)
T ss_dssp             CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred             CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence            45888886 7888544 4667889999999999999999964221   469999999999999999999998

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=97.26  E-value=0.00099  Score=62.01  Aligned_cols=69  Identities=17%  Similarity=0.253  Sum_probs=57.4

Q ss_pred             CcEEecCCCceEee-cCCCCeEEEEEEEEcCCCCeEEEEEcccCCC-c-----eeecCCceeeCCCCEEEEEEEecc
Q 025361           73 RRLKLDPANKLYFP-YEAGKQVRSAIKIKNTSKSHVAFKFQTTAPK-S-----CFMRPPGAILAPGESLIATVFKFV  142 (254)
Q Consensus        73 ~lL~IdP~~eL~F~-~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk-~-----Y~VRP~~GiL~PgeS~~I~Vtl~v  142 (254)
                      .-+.+++. .+.|- ..++...+.+|+|+|++.-++.|++.....+ .     +.|.|..|+|.||+++.|.|++.+
T Consensus        28 P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v  103 (366)
T 3qis_A           28 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  103 (366)
T ss_dssp             CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             CeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence            45888886 99994 3467889999999999999999999754222 2     669999999999999999999854

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=95.31  E-value=0.057  Score=46.29  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=55.1

Q ss_pred             EEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |+++|. .+.|.-- .|+.....++++|+++.++-++.-.. |..+.+++..+.|+||++..|.|++
T Consensus         3 i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~   67 (220)
T 2qsv_A            3 LQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL   67 (220)
T ss_dssp             EEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred             eEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence            889996 9999754 35566779999999999999987544 7888889999999999999999998

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=94.51  E-value=0.14  Score=43.83  Aligned_cols=66  Identities=18%  Similarity=0.253  Sum_probs=56.0

Q ss_pred             CCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEE-EEcccCCCceeecCCceeeCCCCEEEEEEEe
Q 025361           72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        72 ~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAF-KVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      ...+.++ . .+.|-.-.|......++|+|+++.++.+ +|+|++ +...+.++.+.|+||++..|.|++
T Consensus       117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~  183 (220)
T 2qsv_A          117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV  183 (220)
T ss_dssp             CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred             CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence            3458888 5 8988733377888999999999998888 888775 678888899999999999999998

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=92.31  E-value=1.9  Score=38.24  Aligned_cols=110  Identities=13%  Similarity=0.162  Sum_probs=66.5

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccC----------CCceeecCCceeeCCCCEEEEEEEecccC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA----------PKSCFMRPPGAILAPGESLIATVFKFVEL  144 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa----------Pk~Y~VRP~~GiL~PgeS~~I~Vtl~v~q  144 (254)
                      |.|+|. .+.|+....   ..+|+|.|.++.++.--+-..+          ..-|.|.|+.-.|+||+...|.|.+.   
T Consensus        30 v~i~~T-RvIy~~~~k---~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~---  102 (257)
T 3q48_A           30 LIAQGT-RVVFPASER---EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYL---  102 (257)
T ss_dssp             -CCSCS-EEEEETTCS---EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEEC---
T ss_pred             EEEcce-EEEEeCCCc---EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEEC---
Confidence            667775 677765332   5899999999887655433211          12399999999999999999999872   


Q ss_pred             CCCCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCC
Q 025361          145 PENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER  200 (254)
Q Consensus       145 p~~~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~~  200 (254)
                      ..  ..|.|..  --|-+....+++..+.     ....-+.....+|++-|-+..-
T Consensus       103 ~~--~LP~DrE--Slf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~~L  149 (257)
T 3q48_A          103 KA--PLPTDRE--SLFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPSQL  149 (257)
T ss_dssp             CC--CCCSSSC--EEEEEEEEEECCC--------------CCEEEEEEEEEECTTC
T ss_pred             CC--CCCCCce--eEEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEecccC
Confidence            11  1122332  3466666666543221     1112234567889998886543

>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A

Probab=87.47  E-value=9.8  Score=32.67  Aligned_cols=109  Identities=15%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEEcccC-------CCceeecCCceeeCCCCEEEEEEEecccCCC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTTA-------PKSCFMRPPGAILAPGESLIATVFKFVELPE  146 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~-~VAFKVKTTa-------Pk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~  146 (254)
                      |.|++. .+.|+....   ..+|+|+|.++. ++.--+-..+       ..-|.|.|+.-.|+||+...|.|.+.   ..
T Consensus         2 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~---~~   74 (218)
T 2xg5_A            2 VSLDRT-RAVFDGSEK---SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTT---PD   74 (218)
T ss_dssp             EEESCS-EEEEETTSS---EEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEEC---GG
T ss_pred             cEeCce-EEEEeCCCC---EEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEec---CC
Confidence            456775 777775433   679999999887 6655543221       23499999999999999999999872   10


Q ss_pred             CCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCC
Q 025361          147 NNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP  198 (254)
Q Consensus       147 ~~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p  198 (254)
                      ....|.|..  .-|-+....+++..+.      ...-+.....+|++-|-+.
T Consensus        75 ~~~lP~DrE--Slf~lnv~eIPp~~~~------~n~lqia~r~rIKlFyRP~  118 (218)
T 2xg5_A           75 ISKLPQDRE--SLFYFNLREIPPRSEK------ANVLQIALQTKIKLFYRPA  118 (218)
T ss_dssp             GGGSCSSSC--EEEEEEEEEECCCCCC------TTEEEEEEEEEEEEEEECG
T ss_pred             CCCCCCCce--EEEEEEeecCCCCCCC------CceEEEEehheeeEEEcCc
Confidence            001123322  3455555555442211      0011234567777777654

>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B

Probab=83.62  E-value=7.3  Score=33.54  Aligned_cols=115  Identities=9%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEccc-----CCCceeecCCceeeCCCCEEEEEEEecccCCCCCC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFKFVELPENNE  149 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT-----aPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e  149 (254)
                      |.|++. .+.|+....   ..+|+|.|.++.++.--+-..     ...-|.|.|+.-.|+||+...|.|.+.   ..  .
T Consensus        14 v~i~~T-RvIy~~~~k---~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~---~~--~   84 (221)
T 2co7_B           14 VKLGAT-RVIYHAGTA---GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT---GG--D   84 (221)
T ss_dssp             CEESCS-EEEEETTSS---CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC---CC--C
T ss_pred             EEEcce-EEEEcCCCC---EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEEC---CC--C
Confidence            556675 677765433   579999999987665444221     123599999999999999999999872   11  1


Q ss_pred             CCCCCCCCCeEEEEEEEeCCCCCchhhhhhc--cCCCcceeEEEEEEEeCCCC
Q 025361          150 KPMYQKSRDKFKIISMKVKADVDYVPELFDE--QKDQTAAEQILRVVFLNPER  200 (254)
Q Consensus       150 ~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~--~~~~~i~e~KLrV~fv~p~~  200 (254)
                      .|.|..  .-|-+....+++..+...+-=.+  ..-+.....+|++-|-+..-
T Consensus        85 lP~DrE--slf~lnv~eIPp~~~~~~~~~~n~~~~lqia~r~rIKlFyRP~~l  135 (221)
T 2co7_B           85 MPTDRE--TLQWVCIKAVPPENEPSDTQAKGATLDLNLSINACDKLIFRPDAV  135 (221)
T ss_dssp             CCSSSC--EEEEEEEEEECCC-----------CEEEEEEEEEEEEEEEECTTS
T ss_pred             CCCCce--EEEEEEeecCCCCcccccccccCcceeEEEEeeeeeeEEEecccc
Confidence            232222  34555555555432110000000  00123456778887776543

>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1

Probab=82.69  E-value=21  Score=30.22  Aligned_cols=112  Identities=12%  Similarity=0.121  Sum_probs=66.0

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCC-CeEEEEEccc-----CCCceeecCCceeeCCCCEEEEEEE-ecccCCCC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSK-SHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVF-KFVELPEN  147 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~-~~VAFKVKTT-----aPk~Y~VRP~~GiL~PgeS~~I~Vt-l~v~qp~~  147 (254)
                      |.+++. .+.|+....   ..+|+|+|.++ .++.--+-..     ...-|.|.|+.-.|+||+...|.|. + ..   .
T Consensus         2 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~-~~---~   73 (206)
T 1l4i_A            2 VALGAT-RVIYPEGQK---QVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA-TN---G   73 (206)
T ss_dssp             EEESCS-EEEEETTCS---EEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC-CT---T
T ss_pred             eEeCce-EEEEeCCCc---EEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec-CC---C
Confidence            456675 777775433   67999999986 6655544221     1134999999999999999999998 6 11   1


Q ss_pred             CCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCC
Q 025361          148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER  200 (254)
Q Consensus       148 ~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~~  200 (254)
                       ..|.|...  -|-+....+++..+...   ....-+.....+|++-|-+..-
T Consensus        74 -~lP~DrEs--lf~lnv~eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~l  120 (206)
T 1l4i_A           74 -QMPEDRES--LFWVNVKAIPAMDKAKT---GENYLQFAIVSRIKLLYRPQGL  120 (206)
T ss_dssp             -CSCSSSCE--EEEEEEEEEECCC-----------CCCEEEEEEEEEEECTTC
T ss_pred             -CCCCCceE--EEEEEeecCCCCccccc---CCceEEEEhhheeeEEEecccc
Confidence             12333333  34444444443221100   0112234567889998876643

>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}

Probab=80.39  E-value=9.3  Score=33.44  Aligned_cols=62  Identities=13%  Similarity=0.229  Sum_probs=44.6

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcc-----cCCCceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT-----TAPKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKT-----TaPk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |.|++. .+.|+....   ..+|+|+|.++.++.--+-.     ....-|.|.|+.-.|+||+...|.|.+
T Consensus        24 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~   90 (239)
T 4djm_A           24 LHLGAT-RVVYNPASS---GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR   90 (239)
T ss_dssp             CEESCS-EEEECTTSS---CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE
T ss_pred             EEEcce-EEEEeCCCC---EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            556665 666664432   47999999988765433221     112349999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	1e-27
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	6e-20
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	5e-19
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	4e-17

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (253), Expect = 1e-27
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
           GSS  S      + K   L + PA +LYF      + ++ I + N +K+ VAFK +TTAP
Sbjct: 1   GSSGSSGKKPLSVFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAP 60

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVP- 175
           +   ++P  +   PG S+   V     L           ++D+F I++ +++      P 
Sbjct: 61  EKYRVKPSNSSCDPGASIDIIVSPHGGLT--------VSAQDRFLIMAAEMEQSSGTGPA 112

Query: 176 ---ELFDEQKDQTAAEQILRVVFLNPERP-EPALE 206
              + + E       E  LR   +   +P    L 
Sbjct: 113 ELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLS 147

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 80.7 bits (199), Expect = 6e-20
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           ++  P  K+ F      +    IK+ N+S   + +  +TT  K   + PP  +L P E++
Sbjct: 7   IQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAV 66

Query: 135 IATVF--KFVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPELFDEQKDQTAAEQI 190
           +  V    F    E+        + D+  +        A   +  E F  Q D     + 
Sbjct: 67  LLAVSCDAFAFGQED-------TNNDRITVEWTNTPDGAAKQFRREWF--QGDGMVRRKN 117

Query: 191 LRVVFL 196
           L + + 
Sbjct: 118 LPIEYN 123

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 77.6 bits (191), Expect = 5e-19
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           + +DP     +P   G    S   I + S S +AFK +++  +   +RP    +      
Sbjct: 4   INVDP-PTGNYPATGGN---STHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 59

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 184
              + +                 DK  I   +V A+       F     Q
Sbjct: 60  KLDINRLPG----------PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ 99

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.6 bits (178), Expect = 4e-17
 Identities = 20/116 (17%), Positives = 31/116 (26%), Gaps = 17/116 (14%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L  DP      P      V S  K+ N     + FK +++      + P    + P  S 
Sbjct: 1   LTADPPA-CTVP---AAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 56

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQI 190
              + +              K  DK  +      AD       F        A  +
Sbjct: 57  DVVITR---------TAGAPK-EDKLVVHFASAPADATDAQAAF---VAVAPAGTV 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.97
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.96
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.91
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.91
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	94.91
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	93.3
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	92.66
d3bwuc1	121	Periplasmic chaperone FimC {Escherichia coli [TaxI	90.18
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	83.6

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-30  Score=216.82  Aligned_cols=127  Identities=24%  Similarity=0.376  Sum_probs=111.5

Q ss_pred             CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCC
Q 025361           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (254)
Q Consensus        71 ~~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~  150 (254)
                      .+.+|.|+|.++|.|.++.++++++.|+|+|.++.+||||||||+|++|+|||+.|+|+||++++|.|++   ++.    
T Consensus        15 ~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~---~~~----   87 (152)
T d1wica_          15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGG----   87 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSS----
T ss_pred             CCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEE---CCC----
Confidence            3678999999899999999999999999999999999999999999999999999999999999999998   332    


Q ss_pred             CCCCCCCCeEEEEEEEeCCCC----CchhhhhhccCCCcceeEEEEEEEeCCCC-CCchh
Q 025361          151 PMYQKSRDKFKIISMKVKADV----DYVPELFDEQKDQTAAEQILRVVFLNPER-PEPAL  205 (254)
Q Consensus       151 p~~~~~kDKFLIqSv~v~~~~----d~~~elFk~~~~~~i~e~KLrV~fv~p~~-ps~~~  205 (254)
                       ...+|+|||+|+++.+++..    +.+.++|+...+..++++||+|+|+.+.. +++++
T Consensus        88 -~~~~~kdKFli~~~~v~~~~~~~~~d~~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~  146 (152)
T d1wica_          88 -LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLML  146 (152)
T ss_dssp             -SCCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCC
T ss_pred             -CcccCCCcEEEEEEEeCCCCCCCccCHHHHhhcCCcCcEEEEEEEEEEeCCCCCCCccc
Confidence             24678999999999997654    24688999988889999999999998754 44443

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2.4e-28  Score=196.86  Aligned_cols=119  Identities=15%  Similarity=0.179  Sum_probs=102.9

Q ss_pred             CcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCC
Q 025361           73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM  152 (254)
Q Consensus        73 ~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~  152 (254)
                      ..|.++|.++|.|++++++.+++.|+|+|+++.+||||||||+|++|+|+|+.|+|+||+++.|.|+|   ++...  .+
T Consensus         5 ~~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~---~~~~~--~~   79 (124)
T d1grwa_           5 GDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSC---DAFAF--GQ   79 (124)
T ss_dssp             CCEEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CCCCG--GG
T ss_pred             CceEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEE---ecCCC--CC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999   55432  24


Q ss_pred             CCCCCCeEEEEEEEeCCCC-CchhhhhhccCCCcceeEEEEEEEeC
Q 025361          153 YQKSRDKFKIISMKVKADV-DYVPELFDEQKDQTAAEQILRVVFLN  197 (254)
Q Consensus       153 ~~~~kDKFLIqSv~v~~~~-d~~~elFk~~~~~~i~e~KLrV~fv~  197 (254)
                      +.+++|||+||++.++++. +.....|.... ..+.+++|+|.|.+
T Consensus        80 ~~~~~dkF~v~~~~~p~~~~~~~~~~w~~~~-~~~~~~~l~V~Y~p  124 (124)
T d1grwa_          80 EDTNNDRITVEWTNTPDGAAKQFRREWFQGD-GMVRRKNLPIEYNP  124 (124)
T ss_dssp             SCCTTCEEEEEEEECCSSCCSSCCGGGGTSS-SCCEEEEEEEEEEC
T ss_pred             cccCCceEEEEEEECCCccHHHHHHHHhccC-CceEEEEEEEEeCC
Confidence            5789999999999997653 33456666544 36789999999974

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=1.7e-24  Score=170.71  Aligned_cols=105  Identities=23%  Similarity=0.317  Sum_probs=90.4

Q ss_pred             CcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCC
Q 025361           73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM  152 (254)
Q Consensus        73 ~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~  152 (254)
                      .+|.|+|. +|.|++++|   .+.++|+|.|+.+||||||||+|++|+|+|+.|+|+||++++|.|++   ++.      
T Consensus         2 ~~L~i~P~-~l~F~~~~g---~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~---~~~------   68 (109)
T d1m1sa_           2 SMINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG------   68 (109)
T ss_dssp             CSEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC------
T ss_pred             ceEEEeCC-EEEeecCCC---cEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEe---CCC------
Confidence            37999997 999998765   67899999999999999999999999999999999999999999998   443      


Q ss_pred             CCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEE
Q 025361          153 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRV  193 (254)
Q Consensus       153 ~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV  193 (254)
                       ...+|||+|+++.++++.+++.++|+..+..  .+..+++
T Consensus        69 -~~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl  106 (109)
T d1m1sa_          69 -PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ--GEIIVKL  106 (109)
T ss_dssp             -CSCEEEEEEEEEEECTTCCCTTHHHHTTCCC--EEEEEEE
T ss_pred             -CCCCCEEEEEEEECCCCCcCHHHHHhcCCCC--CcEEEEE
Confidence             2357999999999999887789999987665  3444443

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=3.6e-24  Score=168.67  Aligned_cols=104  Identities=17%  Similarity=0.211  Sum_probs=89.2

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCCC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~~  154 (254)
                      |.++|. +|.|+...   ..+.|+|+|.|+.+||||||||+|.+|+|+|+.|+|+||+++.|.|++   +|.       .
T Consensus         1 l~~dP~-~~~f~~~~---g~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~---~~~-------~   66 (107)
T d1rowa_           1 LTADPP-ACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A   66 (107)
T ss_dssp             CEEESS-SEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred             CeeCCC-cceeeCCC---CeEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEe---CCC-------C
Confidence            679998 89998664   478999999999999999999999999999999999999999999998   443       2


Q ss_pred             CCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 025361          155 KSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  194 (254)
Q Consensus       155 ~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~  194 (254)
                      ..+|||+||++.++++.+++.++|+.....  .+..|++.
T Consensus        67 ~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl~  104 (107)
T d1rowa_          67 PKEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  104 (107)
T ss_dssp             CEEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCCcCHHHHhhcCCCC--CcEEEEEE
Confidence            358999999999999988889999976543  34455544

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.91  E-value=0.17  Score=38.40  Aligned_cols=62  Identities=11%  Similarity=0.261  Sum_probs=47.4

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEccc-----CCCceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT-----aPk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |.|+.. .+.|....   -...|+|+|.++.++-..+...     ...-|.|.|+.-.|+||+...|.|..
T Consensus         7 v~l~~T-Rvi~~~~~---~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~   73 (128)
T d2co7b1           7 VKLGAT-RVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR   73 (128)
T ss_dssp             CEESCS-EEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred             EEECCe-EEEEcCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEe
Confidence            556775 77776432   3678999999988776665332     23359999999999999999999997

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=93.30  E-value=0.85  Score=34.91  Aligned_cols=62  Identities=15%  Similarity=0.258  Sum_probs=47.7

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCC-------CceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP-------KSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaP-------k~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |.|+.. .+.|+...   -...|+|+|.++.++...+.....       .-|.|.|+.-.|+||+...|.|..
T Consensus         8 v~l~~T-RvIy~~~~---~~~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI~~   76 (141)
T d1p5va1           8 VTIGES-RIIYPLDA---AGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ   76 (141)
T ss_dssp             EEESCS-EEEEETTC---SCEEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEEEE
T ss_pred             eEeCcc-EEEEcCCC---cEEEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEEEe
Confidence            556665 67776432   256899999999988888755432       229999999999999999999986

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=1.2  Score=33.23  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEEccc--C-----CCceeecCCceeeCCCCEEEEEEEecccCCC
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTT--A-----PKSCFMRPPGAILAPGESLIATVFKFVELPE  146 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~-~VAFKVKTT--a-----Pk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~  146 (254)
                      +.|+.. .+.|....   -...++|+|.+++ ++--.....  .     ..-|.|.|+.-.|+||+...|.|.+.   ..
T Consensus         2 i~l~~T-RvI~~~~~---~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~~---~~   74 (124)
T d2j2za1           2 VSLDRT-RAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTT---PD   74 (124)
T ss_dssp             EEESCS-EEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEEC---GG
T ss_pred             eEeCCc-EEEEeCCC---CEEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEEc---CC
Confidence            455664 67776432   3688999998764 443332221  1     12399999999999999999999972   11


Q ss_pred             CCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCC
Q 025361          147 NNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP  198 (254)
Q Consensus       147 ~~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p  198 (254)
                      ....|.|..  --|.+....+++..+.      ...-......+|++-|-+.
T Consensus        75 ~~~lP~drE--s~~~l~i~~IP~~~~~------~~~l~i~~r~~iklFyRP~  118 (124)
T d2j2za1          75 ISKLPQDRE--SLFYFNLREIPPRSEK------ANVLQIALQTKIKLFYRPA  118 (124)
T ss_dssp             GGGSCSSSC--EEEEEEEEEECCCCCC------SSEEEEEEEEEEEEEEECG
T ss_pred             CCCCCCcee--EEEEEEEEecCCCCCC------CCEEEEEEeeEEEEEECCc
Confidence            111122222  3344455555543221      1111234566777777653

>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone FimC
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=2.6  Score=31.08  Aligned_cols=62  Identities=8%  Similarity=0.203  Sum_probs=43.7

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEE-----cccCCCceeecCCceeeCCCCEEEEEEEe
Q 025361           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKF-----QTTAPKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~-~VAFKV-----KTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      |.++.. .+.|....   ..+.++|.|.+++ ++....     ..+....|.|.|+.-.|+||+...|.|.+
T Consensus         2 i~l~~T-RvI~~~~~---~~~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p~~~q~vRI~~   69 (121)
T d3bwuc1           2 VALGAT-RVIYPAGQ---KQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD   69 (121)
T ss_dssp             EEESCS-EEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESSEEEEESSEEEEEEEEE
T ss_pred             eeECce-EEEEcCCC---ceEEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCCcEEeCCCCeeEEEEEe
Confidence            345554 66676432   3689999998754 433221     22444569999999999999999999987

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=83.60  E-value=0.63  Score=33.91  Aligned_cols=55  Identities=24%  Similarity=0.236  Sum_probs=45.5

Q ss_pred             ecCCCCeEEEEEEEEcCCCCeEE-EEEcccCCCceeecCCceeeCCCCEEEEEEEe
Q 025361           86 PYEAGKQVRSAIKIKNTSKSHVA-FKFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (254)
Q Consensus        86 ~~e~~k~~~s~LtL~N~S~~~VA-FKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl  140 (254)
                      ..++|......++|+|.....+. .++--+.|.-..+.|..--|+||++..+.+.+
T Consensus        12 ~v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~V   67 (103)
T d1w8oa1          12 ALEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTI   67 (103)
T ss_dssp             EECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEE
T ss_pred             eeCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEE
Confidence            34568889999999999876543 45666789999999988889999999999987