Citrus Sinensis ID: 025404

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHccHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEcEEEEcccccccEEEEEEEEcccccEEEEEcccccccccccccccccccHHHHcccccHHHHHHHHHHHHccccccccccccccccEEEEEccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHccHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccHHHHHHHHHHcccccEEEEcccHHHccccHHHccccccccccccccccccccccccccccccccccccEEEEEcEEccccccccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEEccccHHHHcccccHHHHHHHHHHHHHcccccEEEEccccccEEEEEccHHHHHHHHccccccHccc
Coil and Loop (DISEMBL)
mdteaelpkrstarhkcVACYKQFKRKDHLIEHMKIsyhsvhqpkcaVCQKLSKSFESLREhltgplskahcsgifsdrgcnlcmnifdspsslikhkeacslsapvpfektlsNAESQKKISGaidekrtcrgpkavamdcemvgggsngtlDLCARVclvdedenvifhtyvqpqlpvtnyryevtglteediknamplkEVKDKILEILNNGESTGRLMLDDGKARLLVGHGlehdldslrmnypdhmlr
Flexible Loop (DISEMBL)
mdteaelpkrstarhkcvacYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPvpfektlsnaesqkkisgaidekrtcrgPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIfhtyvqpqlpvtnYRYEVTGLteediknamplkeVKDKILEILNNGESTGRLMLDDGKARLLVGHglehdldslrmnypdhmlr
Low Complexity Region (SEG)
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR
Disordered region (IsUnstruct)
**************HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIK***************************************KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH***************
Disordered Region (DISOPRED)
******************ACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTG***********SDRGCNLCMNIFDSPSSLIKHKEAC***A******************************KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDH*L*
Disordered Region (DISEMBL)
**************HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR
Disordered Region (DISPRO)
************ARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPS****************************************RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q6PAQ4	432	RNA exonuclease 4 OS=Mus	yes	no	0.478	0.280	0.345	3e-16
Q08237	289	RNA exonuclease 4 OS=Sacc	yes	no	0.411	0.359	0.355	1e-15
Q9GZR2	422	RNA exonuclease 4 OS=Homo	yes	no	0.411	0.246	0.355	1e-15
Q6FQA0	263	RNA exonuclease 4 OS=Cand	yes	no	0.391	0.376	0.362	2e-15
Q9CZI9	336	Apoptosis-enhancing nucle	no	no	0.612	0.461	0.291	3e-15
Q757I9	285	RNA exonuclease 4 OS=Ashb	yes	no	0.411	0.364	0.355	4e-15
Q91560	421	RNA exonuclease 4 OS=Xeno	N/A	no	0.411	0.247	0.364	4e-15
Q4IEV5	319	RNA exonuclease 4 OS=Gibb	yes	no	0.411	0.326	0.355	8e-15
Q8WTP8	325	Apoptosis-enhancing nucle	no	no	0.411	0.32	0.313	1e-14
Q6DEW6	414	RNA exonuclease 4 OS=Xeno	no	no	0.411	0.251	0.364	1e-14

>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 15/136 (11%)

Query: 119 QKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQ 177
           QKK + ++++++   G  KA+A+DCEMVG G  G   + ARV +V++    ++  YV+P 
Sbjct: 234 QKKRTISLEKEQAFGGLTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPT 293

Query: 178 LPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE 237
            PVT+YR  V+G+  E++K     + VK ++ E+L              K R+LVGH L 
Sbjct: 294 EPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEML--------------KGRILVGHALH 339

Query: 238 HDLDSLRMNYPDHMLR 253
           +DL  L +++P   +R
Sbjct: 340 NDLKVLFLDHPKKKIR 355

May function as an exonuclease.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 14/118 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +AMDCE VG G  G     AR+ +V+   +V+   +V+P+  V  +R  V+G+  E +
Sbjct: 120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHM 179

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           KNA+  KE + K  +IL              + R+LVGH L+HDL++L +++P  +LR
Sbjct: 180 KNAITFKEAQKKTADIL--------------EGRILVGHALKHDLEALMLSHPKSLLR 223

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 14/118 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           +A+A+DCEMVG G  G   + ARV +V++    ++  YV+P  PVT+YR  V+G+  E++
Sbjct: 242 RALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 301

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           K    L+ V+ ++ E+L              K R+LVGH L +DL  L +++P   +R
Sbjct: 302 KQGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIR 345

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 14/113 (12%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +AMDCE VG G  G     ARV LV+   NV+   +V+P+  VT++R  V+G+T + +
Sbjct: 94  KYIAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHM 153

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP 248
           KNA+  K+ + ++ +IL              K ++LVGH ++HDL++L +++P
Sbjct: 154 KNAVSFKQAQQQLSDIL--------------KDKILVGHAVKHDLEALMLSHP 192

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 20/175 (11%)

Query: 80  GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGP-KAV 138
           G  LC+    SPS +    EA       P  ++ SN    KK   ++  +    GP K V
Sbjct: 56  GPGLCL--LPSPSQMPAVTEASDSRRQRPKARSGSNGLCSKK---SVPREAPRPGPIKCV 110

Query: 139 AMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNA 198
           A+DCEMVG G  G +   AR  +V    +V++  Y++P++P+ +YR   +G+T + +  A
Sbjct: 111 AIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMHKA 170

Query: 199 MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           +P +  + +IL++L              K +++VGH L +D  +L+  +P    R
Sbjct: 171 IPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTR 211

Exonuclease with activity against single- and double-stranded DNA and RNA. Mediates p53-induced apoptosis. When induced by p53 following DNA damage, digests double-stranded DNA to form single-stranded DNA and amplifies DNA damage signals, leading to enhancement of apoptosis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 14/118 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K VAMDCE VG G +G   + ARV +V+     +   YV+P+  VT++R  V+G+T   +
Sbjct: 112 KFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITPAHM 171

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           K A+ L+E + ++  +L N              R+L+GHGL HDL+ L +++P   +R
Sbjct: 172 KQAVTLEEAQRRVAAMLKN--------------RVLIGHGLHHDLEMLMVSHPKAQIR 215

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 14/118 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           + VAMDCEMVG G +G   + ARV +V+     ++  YV+P   VT+YR  V+G+  ED+
Sbjct: 233 RTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDV 292

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           K   P K V+ ++ EIL              + R LVGH + +DL  L +++P   +R
Sbjct: 293 KKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIR 336

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 14/118 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +A+DCEMVG G  G     ARV +VD     I+ +YV+P+  VTN+R  V+G++++ +
Sbjct: 132 KYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSM 191

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           + A   +EV+ +I ++L              + R+LVGH L+HDL++L +++P   +R
Sbjct: 192 RFARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIR 235

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 14/118 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K VA+DCEMVG G  G +   AR  +V    NV++  Y++P++P+ +YR   +G+T + +
Sbjct: 109 KCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHM 168

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           + A+P +  + +IL++L              K +++VGH L +D  +L+  +P    R
Sbjct: 169 RKAVPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTR 212

Exonuclease with activity against single- and double-stranded DNA and RNA. Mediates p53-induced apoptosis. When induced by p53 following DNA damage, digests double-stranded DNA to form single-stranded DNA and amplifies DNA damage signals, leading to enhancement of apoptosis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 14/118 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           + VAMDCEMVG G +G   + ARV +V+     ++  YV+P   VT+YR  V+G+  +DI
Sbjct: 227 RTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDI 286

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           KN    K+V+ ++ EIL              + R LVGH + +DL  L +++P   +R
Sbjct: 287 KNGEAFKDVQAEVAEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIR 330

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
359807091	366	uncharacterized protein LOC100788682 [Gl	1.0	0.691	0.666	3e-96
356556710	366	PREDICTED: RNA exonuclease 4-like [Glyci	1.0	0.691	0.666	4e-96
296086710	341	unnamed protein product [Vitis vinifera]	1.0	0.741	0.629	2e-93
255567670	365	exonuclease, putative [Ricinus communis]	1.0	0.693	0.635	1e-91
224068807	349	predicted protein [Populus trichocarpa]	0.976	0.707	0.645	4e-91
357454687	366	RNA exonuclease [Medicago truncatula] gi	1.0	0.691	0.622	5e-90
388501576	366	unknown [Medicago truncatula]	1.0	0.691	0.622	6e-90
255635227	241	unknown [Glycine max]	0.944	0.991	0.655	6e-88
449449811	350	PREDICTED: RNA exonuclease 4-like [Cucum	0.932	0.674	0.557	1e-76
79422951	357	exonuclease-like protein [Arabidopsis th	0.992	0.703	0.533	2e-73

>gi|359807091|ref|NP_001241345.1| uncharacterized protein LOC100788682 [Glycine max] gi|255641871|gb|ACU21204.1| unknown [Glycine max]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/255 (66%), Positives = 203/255 (79%), Gaps = 2/255 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV-PFEKTLSNAESQ 119
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H+E C LSAP  P    L   +SQ
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQ 120

Query: 120 KKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 178
                + DE     GP  AVA+DCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 179 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 238
           PVTNYRY++TGLTEE +KNA+PLK+V++K+L+IL NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 239 DLDSLRMNYPDHMLR 253
           DLD L+MNYPDHMLR
Sbjct: 241 DLDCLKMNYPDHMLR 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556710|ref|XP_003546666.1| PREDICTED: RNA exonuclease 4-like [Glycine max]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 170/255 (66%), Positives = 203/255 (79%), Gaps = 2/255 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV-PFEKTLSNAESQ 119
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H++ C +SAP  P    L   +SQ
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQ 120

Query: 120 KKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 178
                  DE     GP  AVAMDCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDFSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 179 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 238
           PVTNYRY++TGLTEE ++NAMPLKEV++K+L+IL+NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 239 DLDSLRMNYPDHMLR 253
           DLD L+MNYPDHMLR
Sbjct: 241 DLDCLKMNYPDHMLR 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086710|emb|CBI32345.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/254 (62%), Positives = 203/254 (79%), Gaps = 1/254 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           M +EA   +  T R+KC+AC++Q+K+K+HL+EHM++SYHSVHQPKC VCQK  KSF+SLR
Sbjct: 1   MGSEAVPSESRTTRYKCLACFRQYKKKEHLVEHMRVSYHSVHQPKCGVCQKQFKSFQSLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT-LSNAESQ 119
           EHLTG L K +C  IFS++GCN C+ IF +  SL +HKE C L  PV  EK  + + ESQ
Sbjct: 61  EHLTGNLPKKNCLKIFSEQGCNYCLKIFKNADSLSEHKEMCQLPVPVTIEKIRMPSTESQ 120

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
              S +I+   T RG +A+A+DCE VGGGS+G+LDLCARVCL+DEDEN+IFHTYVQPQ+P
Sbjct: 121 IDFSDSINRDHTSRGLEAIAIDCEKVGGGSDGSLDLCARVCLIDEDENIIFHTYVQPQIP 180

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VTNYRYE+TG+TE  +++AMPLKEV++K++E+L NGES GRL LD GK RLLVGH L HD
Sbjct: 181 VTNYRYELTGITEAHLRDAMPLKEVREKVMEVLRNGESIGRLRLDGGKGRLLVGHDLRHD 240

Query: 240 LDSLRMNYPDHMLR 253
           LD LRM+YPDH+LR
Sbjct: 241 LDCLRMHYPDHLLR 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567670|ref|XP_002524814.1| exonuclease, putative [Ricinus communis] gi|223535998|gb|EEF37657.1| exonuclease, putative [Ricinus communis]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 164/258 (63%), Positives = 203/258 (78%), Gaps = 5/258 (1%)

Query: 1   MDTEAELPKRS-TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESL 59
           M ++ ++P ++ T R+KC ACYKQ+K+K+HL+EHM ISYHSVHQP+CAVCQK  KSFESL
Sbjct: 1   MASKPDIPTKTPTTRYKCCACYKQYKKKEHLVEHMIISYHSVHQPRCAVCQKHCKSFESL 60

Query: 60  REHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT---LSNA 116
           R HL GPL+KA+CS +FS  GC+LC+ +FDSP+SLI+H+E C LS P  F K    +  +
Sbjct: 61  RAHLQGPLAKANCSRVFSHLGCDLCLKVFDSPNSLIRHREMCCLSTPSSFVKLQICMLGS 120

Query: 117 ESQKKISGAIDEKRTCRGP-KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ 175
                  G I       G  KA+A+DCEMVGGGS+GTL+LCARVCLVDEDEN+IFH YVQ
Sbjct: 121 NDNYIGGGVIGSNDNIGGDVKAIAIDCEMVGGGSDGTLNLCARVCLVDEDENIIFHAYVQ 180

Query: 176 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG 235
           PQ+P+T+YRYEVTGLTEE +++AMPLKEV++KILEIL NGES G+  L  GKARLLVGH 
Sbjct: 181 PQIPITDYRYEVTGLTEEHLRDAMPLKEVQNKILEILYNGESVGKARLSGGKARLLVGHS 240

Query: 236 LEHDLDSLRMNYPDHMLR 253
           L+HDLD LRM YPDH+LR
Sbjct: 241 LDHDLDCLRMFYPDHLLR 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068807|ref|XP_002302830.1| predicted protein [Populus trichocarpa] gi|222844556|gb|EEE82103.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 164/254 (64%), Positives = 199/254 (78%), Gaps = 7/254 (2%)

Query: 1   MDTEAELPKRS-TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESL 59
           MD EA+ P RS T RHKC ACYKQFK+K+HL+EHMKISYH+ HQPKC VCQK  KSFESL
Sbjct: 1   MDAEADPPTRSRTERHKCFACYKQFKKKEHLVEHMKISYHTPHQPKCGVCQKHCKSFESL 60

Query: 60  REHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQ 119
           R HLTGPLS+A CS  FS +GC+LC+ ++DSPSSL KH+E C LSAP      +      
Sbjct: 61  RNHLTGPLSRAGCSRTFSAQGCDLCLKLYDSPSSLGKHREICHLSAPASLGTKI------ 114

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
              +G++D K T +G KA+A++C +VGGG++G+LDLCARVCLVDEDEN+IFHTYVQPQ  
Sbjct: 115 LPFAGSVDVKYTTKGAKAIAINCGLVGGGTDGSLDLCARVCLVDEDENIIFHTYVQPQSA 174

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VT+YRYE+TGLTEE ++N+   KEV+D+ILEIL NGES  RLM D GKARLLVGH L+  
Sbjct: 175 VTDYRYEITGLTEEHLRNSKSHKEVQDRILEILYNGESARRLMSDSGKARLLVGHDLKRG 234

Query: 240 LDSLRMNYPDHMLR 253
           LD LR+NYP H+LR
Sbjct: 235 LDCLRINYPGHLLR 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454687|ref|XP_003597624.1| RNA exonuclease [Medicago truncatula] gi|358344695|ref|XP_003636423.1| RNA exonuclease [Medicago truncatula] gi|217072104|gb|ACJ84412.1| unknown [Medicago truncatula] gi|355486672|gb|AES67875.1| RNA exonuclease [Medicago truncatula] gi|355502358|gb|AES83561.1| RNA exonuclease [Medicago truncatula] gi|388504350|gb|AFK40241.1| unknown [Medicago truncatula]

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 158/254 (62%), Positives = 196/254 (77%), Gaps = 1/254 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD E + P+  T RHKC ACYKQ+K+K++L+EHMK +YHS+HQPKC VC+K  KSFESLR
Sbjct: 1   MDNEEDPPEPPTKRHKCSACYKQYKKKEYLVEHMKTAYHSIHQPKCVVCEKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF-EKTLSNAESQ 119
           EHLTGPL+K  CS +FS  GC LC+  FDS +SL  H+E C L+APVP            
Sbjct: 61  EHLTGPLAKGLCSAVFSQYGCQLCLTRFDSHASLSDHRETCRLAAPVPLGTNEFPCTNIH 120

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
                + DE      P+A+AMDCEMVGGGS+G+L+LCARVCLVDEDEN+IFHTYV+PQ+P
Sbjct: 121 NNFLDSSDENDADCLPRAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIP 180

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VTNYRY++TGLTEE +++ MPLKEV++KIL+IL NGES G++ LD GKARLLVGH L HD
Sbjct: 181 VTNYRYDITGLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHD 240

Query: 240 LDSLRMNYPDHMLR 253
           LD L M+YPDH++R
Sbjct: 241 LDCLGMSYPDHLMR 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501576|gb|AFK38854.1| unknown [Medicago truncatula]

 Score =  336 bits (861), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 158/254 (62%), Positives = 196/254 (77%), Gaps = 1/254 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD E + P+  T RHKC ACYKQ+K+K++L+EHMK +YHS+HQPKC VC+K  KSFESLR
Sbjct: 1   MDNEEDPPEPPTKRHKCSACYKQYKKKEYLVEHMKTAYHSIHQPKCVVCEKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF-EKTLSNAESQ 119
           EHLTGPL+K  CS +FS  GC LC+  FDS +SL  H+E C L+APVP            
Sbjct: 61  EHLTGPLAKGLCSAVFSQYGCQLCLTRFDSHASLSDHRETCRLAAPVPLGTNEFPCTNIH 120

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
                + DE      P+A+AMDCEMVGGGS+G+L+LCARVCLVDEDEN+IFHTYV+PQ+P
Sbjct: 121 NNFLDSSDENDADCLPRAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIP 180

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VTNYRY++TGLTEE +++ MPLKEV++KIL+IL NGES G++ LD GKARLLVGH L HD
Sbjct: 181 VTNYRYDITGLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHD 240

Query: 240 LDSLRMNYPDHMLR 253
           LD L M+YPDH++R
Sbjct: 241 LDCLGMSYPDHLMR 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635227|gb|ACU17968.1| unknown [Glycine max]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 190/241 (78%), Gaps = 2/241 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV-PFEKTLSNAESQ 119
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H++ C +SAP  P    L   +SQ
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQ 120

Query: 120 KKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 178
                  DE     GP  AVAMDCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDFSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 179 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 238
           PVTNYRY++TGLTEE ++NAMPLKEV++K+L+IL+NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 239 D 239
           D
Sbjct: 241 D 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449811|ref|XP_004142658.1| PREDICTED: RNA exonuclease 4-like [Cucumis sativus] gi|449507969|ref|XP_004163181.1| PREDICTED: RNA exonuclease 4-like [Cucumis sativus]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 141/253 (55%), Positives = 185/253 (73%), Gaps = 17/253 (6%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD++ +  K  + RHKC ACYKQ+K+K+HLIEHM++SYHSVHQP+C VC K  KSFESLR
Sbjct: 1   MDSDHDPLKTPSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQK 120
           EHL              ++GC LC+ + D P SL  H++ C ++APV    +L   +   
Sbjct: 61  EHLM-------------EQGCGLCLRVLDGPESLSDHQDICCITAPVHQGTSLPPTD--- 104

Query: 121 KISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPV 180
            +S   +E R+ RG  A+A+DC M GGGS+G LD+C  +CLVDEDE +IF+T+VQPQ+P+
Sbjct: 105 -LSDCYEEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPI 163

Query: 181 TNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
           TNYR+EVTGL EE ++ AMPLK V++K+L++L NGES GRL L+ GKA+LLVGH LEHDL
Sbjct: 164 TNYRHEVTGLKEEHMRYAMPLKNVQEKVLKLLLNGESIGRLRLNGGKAKLLVGHDLEHDL 223

Query: 241 DSLRMNYPDHMLR 253
           D LR+NYPDHMLR
Sbjct: 224 DCLRLNYPDHMLR 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79422951|ref|NP_189436.2| exonuclease-like protein [Arabidopsis thaliana] gi|193211503|gb|ACF16171.1| At3g27970 [Arabidopsis thaliana] gi|225898687|dbj|BAH30474.1| hypothetical protein [Arabidopsis thaliana] gi|332643867|gb|AEE77388.1| exonuclease-like protein [Arabidopsis thaliana]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/253 (53%), Positives = 175/253 (69%), Gaps = 2/253 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD  + +    T R+KC ACY+QF + +HL+EHMKISYHS H+P C VC+K  +SFESLR
Sbjct: 1   MDYRSSMESSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQK 120
           EHL GPL K  C  IFS RGC  CM I +SP+S   H+E C  S+ V    T   A    
Sbjct: 61  EHLIGPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSS-VNSGLTTRMAALGL 119

Query: 121 KISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPV 180
           +    ID   + R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE +NVIFHTYV+P + V
Sbjct: 120 RDKAMIDYTSS-RSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAV 178

Query: 181 TNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
           T+YRYE TG+  E++++AMPLK+V+ KI E L NGE   ++    GKAR+LVGHGL+HDL
Sbjct: 179 TSYRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDL 238

Query: 241 DSLRMNYPDHMLR 253
           D L++ YP  M+R
Sbjct: 239 DRLQLEYPSSMIR 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2086839	357	AT3G27970 [Arabidopsis thalian	0.992	0.703	0.533	6.1e-71
TAIR|locus:2066406	344	AT2G48100 [Arabidopsis thalian	0.936	0.688	0.519	2.7e-68
TAIR|locus:2170533	348	AT5G40310 [Arabidopsis thalian	0.948	0.689	0.520	9.2e-68
ZFIN|ZDB-GENE-120215-216	418	si:ch73-209e20.4 "si:ch73-209e	0.411	0.248	0.398	4.4e-15
MGI|MGI:2684957	432	Rexo4 "REX4, RNA exonuclease 4	0.478	0.280	0.345	8e-15
MGI|MGI:1915298	336	Aen "apoptosis enhancing nucle	0.612	0.461	0.291	1.6e-14
FB|FBgn0036405	290	CG6833 [Drosophila melanogaste	0.438	0.382	0.344	4.3e-14
UNIPROTKB|Q9GZR2	422	REXO4 "RNA exonuclease 4" [Hom	0.486	0.291	0.326	5.7e-14
UNIPROTKB|H9KZR7	379	H9KZR7 "Uncharacterized protei	0.501	0.335	0.330	2.7e-13
UNIPROTKB|F1NQP7	414	Gga.48606 "Uncharacterized pro	0.501	0.306	0.330	3.5e-13

TAIR|locus:2086839 AT3G27970 [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 135/253 (53%), Positives = 175/253 (69%)

Query:     1 MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
             MD  + +    T R+KC ACY+QF + +HL+EHMKISYHS H+P C VC+K  +SFESLR
Sbjct:     1 MDYRSSMESSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLR 60

Query:    61 EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQK 120
             EHL GPL K  C  IFS RGC  CM I +SP+S   H+E C  S+ V    T   A    
Sbjct:    61 EHLIGPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSS-VNSGLTTRMAALGL 119

Query:   121 KISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPV 180
             +    ID   + R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE +NVIFHTYV+P + V
Sbjct:   120 RDKAMIDYTSS-RSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAV 178

Query:   181 TNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
             T+YRYE TG+  E++++AMPLK+V+ KI E L NGE   ++    GKAR+LVGHGL+HDL
Sbjct:   179 TSYRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDL 238

Query:   241 DSLRMNYPDHMLR 253
             D L++ YP  M+R
Sbjct:   239 DRLQLEYPSSMIR 251

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2066406 AT2G48100 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 134/258 (51%), Positives = 178/258 (68%)

Query:     1 MDTEAELPKRS--TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFES 58
             MD++    KR   + RH+CVACYK F R++HL+EHMKISYHS+HQP+C VC K  KSFES
Sbjct:     1 MDSQLNPSKRRKISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFES 60

Query:    59 LREHLTGP--LSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNA 116
             +REHL  P  LSK +C  IF+ RGC LC+ IF+   +L +HK  C LS P P        
Sbjct:    61 VREHLNVPDHLSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPL-----GT 115

Query:   117 ESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQP 176
              +Q+  S ++   R     KA+A+DCEMVGGG++GT+D CA VCLVD+DENVIF T+VQP
Sbjct:   116 STQRNPSSSLAGSRL----KAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQP 171

Query:   177 QLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLL-VGHG 235
              LPVT+YR+E+TGLT+ED+K+ MPL+ V++++   L  G++       DG  RLL VGH 
Sbjct:   172 LLPVTDYRHEITGLTKEDLKDGMPLEHVRERVFSFLCGGQN-------DGAGRLLLVGHD 224

Query:   236 LEHDLDSLRMNYPDHMLR 253
             L HD+  L++ YP H+LR
Sbjct:   225 LRHDMSCLKLEYPSHLLR 242

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

TAIR|locus:2170533 AT5G40310 [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 126/242 (52%), Positives = 171/242 (70%)

Query:    12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAH 71
             T R+KC  CY+QF +K+HL+EHM+ISYHSVH+P C +C K  +SF+SLREHL GPL K  
Sbjct:     3 TCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQE 62

Query:    72 CSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRT 131
             C  IFS RGC  C+ I +SP++   H+E C LS  V     +  A    + +  ID   +
Sbjct:    63 CKNIFSIRGCRFCLTILESPNARRIHQERCQLSN-VTSGLMIRMAALGLRNNSTIDYTSS 121

Query:   132 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLT 191
              R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE ENV+FHTYV+P +PVTNYRYE+TG+ 
Sbjct:   122 -RSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIR 180

Query:   192 EEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 251
              E++++AM LK  + K+ E L NGE   ++   +GKAR+LVGHGL++ LDSL++ Y   M
Sbjct:   181 PENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSM 240

Query:   252 LR 253
             +R
Sbjct:   241 IR 242

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-120215-216 si:ch73-209e20.4 "si:ch73-209e20.4" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 47/118 (39%), Positives = 68/118 (57%)

Query:   136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
             +AVAMDCEMVG G  G   + ARV LV+     I+  YV+P   VT+YR  V+G+  +DI
Sbjct:   232 RAVAMDCEMVGVGYKGEDSILARVSLVNHFGKCIYDKYVKPTEKVTDYRTAVSGIRPDDI 291

Query:   196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
             KN   +K V+ ++ +IL              K R+LVGH + +DL  L +++P  M+R
Sbjct:   292 KNGEDIKTVQKEVAQIL--------------KGRILVGHAIHNDLKILLLDHPKKMIR 335

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

MGI|MGI:2684957 Rexo4 "REX4, RNA exonuclease 4 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 195 (73.7 bits), Expect = 8.0e-15, P = 8.0e-15
 Identities = 47/136 (34%), Positives = 78/136 (57%)

Query:   119 QKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQ 177
             QKK + ++++++   G  KA+A+DCEMVG G  G   + ARV +V++    ++  YV+P 
Sbjct:   234 QKKRTISLEKEQAFGGLTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPT 293

Query:   178 LPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE 237
              PVT+YR  V+G+  E++K     + VK ++ E+L              K R+LVGH L 
Sbjct:   294 EPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEML--------------KGRILVGHALH 339

Query:   238 HDLDSLRMNYPDHMLR 253
             +DL  L +++P   +R
Sbjct:   340 NDLKVLFLDHPKKKIR 355

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:1915298 Aen "apoptosis enhancing nuclease" [Mus musculus (taxid:10090)]

 Score = 189 (71.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 51/175 (29%), Positives = 87/175 (49%)

Query:    80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGP-KAV 138
             G  LC+    SPS +    EA       P  ++ SN    KK   ++  +    GP K V
Sbjct:    56 GPGLCL--LPSPSQMPAVTEASDSRRQRPKARSGSNGLCSKK---SVPREAPRPGPIKCV 110

Query:   139 AMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNA 198
             A+DCEMVG G  G +   AR  +V    +V++  Y++P++P+ +YR   +G+T + +  A
Sbjct:   111 AIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMHKA 170

Query:   199 MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
             +P +  + +IL++L              K +++VGH L +D  +L+  +P    R
Sbjct:   171 IPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTR 211

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042771 "intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator" evidence=ISO

FB|FBgn0036405 CG6833 [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 4.3e-14, P = 4.3e-14
 Identities = 43/125 (34%), Positives = 71/125 (56%)

Query:   129 KRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVT 188
             K+     + +AMDCEMVG G N   D+ ARV +V+   +V+   YV+P+  VT+YR  V+
Sbjct:   109 KKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDKYVKPRKEVTDYRTSVS 168

Query:   189 GLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP 248
             G+  +DI N      V+++++++++               R+LVGHGL +DL  L + +P
Sbjct:   169 GIRPQDIANGEDFAAVQNEVMKLIHG--------------RILVGHGLRNDLAVLGIRHP 214

Query:   249 DHMLR 253
              H +R
Sbjct:   215 FHDIR 219

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9GZR2 REXO4 "RNA exonuclease 4" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 5.7e-14, P = 5.7e-14
 Identities = 45/138 (32%), Positives = 79/138 (57%)

Query:   117 ESQKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ 175
             +S+  +S ++ +++   G  +A+A+DCEMVG G  G   + ARV +V++    ++  YV+
Sbjct:   222 QSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVK 281

Query:   176 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG 235
             P  PVT+YR  V+G+  E++K    L+ V+ ++ E+L              K R+LVGH 
Sbjct:   282 PTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEML--------------KGRILVGHA 327

Query:   236 LEHDLDSLRMNYPDHMLR 253
             L +DL  L +++P   +R
Sbjct:   328 LHNDLKVLFLDHPKKKIR 345

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|H9KZR7 H9KZR7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 47/142 (33%), Positives = 77/142 (54%)

Query:   113 LSNAESQKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFH 171
             L   +S++ +   + ++++  G  +AVAMDCEMVG G +G   + ARV +V+     I+ 
Sbjct:   180 LEAGQSKQSVEQVLVKEKSSGGLTRAVAMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYD 239

Query:   172 TYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLL 231
              YV+P   VT+YR  V+G+  E +K     K V+ ++ +ILN               R+L
Sbjct:   240 KYVKPTEEVTDYRTAVSGIRPEHLKTGEDFKTVQKEVADILNG--------------RIL 285

Query:   232 VGHGLEHDLDSLRMNYPDHMLR 253
             VGH L +DL  L +++P   +R
Sbjct:   286 VGHALHNDLKVLFLDHPKKKIR 307

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1NQP7 Gga.48606 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 47/142 (33%), Positives = 77/142 (54%)

Query:   113 LSNAESQKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFH 171
             L   +S++ +   + ++++  G  +AVAMDCEMVG G +G   + ARV +V+     I+ 
Sbjct:   215 LEAGQSKQSVEQVLVKEKSSGGLTRAVAMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYD 274

Query:   172 TYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLL 231
              YV+P   VT+YR  V+G+  E +K     K V+ ++ +ILN               R+L
Sbjct:   275 KYVKPTEEVTDYRTAVSGIRPEHLKTGEDFKTVQKEVADILNG--------------RIL 320

Query:   232 VGHGLEHDLDSLRMNYPDHMLR 253
             VGH L +DL  L +++P   +R
Sbjct:   321 VGHALHNDLKVLFLDHPKKKIR 342

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
cd06144	152	cd06144, REX4_like, DEDDh 3'-5' exonuclease domain	4e-50
cd06149	157	cd06149, ISG20, DEDDh 3'-5' exonuclease domain of	1e-22
cd06145	150	cd06145, REX1_like, DEDDh 3'-5' exonuclease domain	2e-21
smart00479	169	smart00479, EXOIII, exonuclease domain in DNA-poly	1e-19
cd06137	161	cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease doma	6e-16
pfam00929	161	pfam00929, RNase_T, Exonuclease	6e-15
cd06127	159	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam	4e-09
TIGR01405	1213	TIGR01405, polC_Gram_pos, DNA polymerase III, alph	2e-07
cd06133	176	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonucleas	2e-06
COG2176	1444	COG2176, PolC, DNA polymerase III, alpha subunit (	3e-06
PRK07740	244	PRK07740, PRK07740, hypothetical protein; Provisio	7e-05
PRK00448	1437	PRK00448, polC, DNA polymerase III PolC; Validated	8e-05
COG0847	243	COG0847, DnaQ, DNA polymerase III, epsilon subunit	6e-04
cd06131	167	cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-	0.001
TIGR01406	225	TIGR01406, dnaQ_proteo, DNA polymerase III, epsilo	0.002
PRK08074	928	PRK08074, PRK08074, bifunctional ATP-dependent DNA	0.002

>gnl|CDD|99847 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

 Score =  160 bits (408), Expect = 4e-50
 Identities = 49/116 (42%), Positives = 75/116 (64%), Gaps = 14/116 (12%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           VA+DCEMVG G +G+    ARV +V+ED NV++ TYV+PQ PVT+YR  V+G+  E +K+
Sbjct: 1   VALDCEMVGVGPDGSESALARVSIVNEDGNVVYDTYVKPQEPVTDYRTAVSGIRPEHLKD 60

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           A   +EV+ K+ E+L                R+LVGH L++DL  L++++P  ++R
Sbjct: 61  APDFEEVQKKVAELLKG--------------RILVGHALKNDLKVLKLDHPKKLIR 102

This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherchia coli RNase T. Length = 152

>gnl|CDD|99852 cd06149, ISG20, DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins

 Score = 90.2 bits (224), Expect = 1e-22
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 14/116 (12%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           VA+DCEMVG G  G     AR  +V+   +V++  Y++P+ PVT+YR   +G+  + + N
Sbjct: 1   VAIDCEMVGTGPGGRESELARCSIVNYHGDVLYDKYIRPEGPVTDYRTRWSGIRRQHLVN 60

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
           A P    + +IL+IL              K +++VGH + +D  +L+  +P HM R
Sbjct: 61  ATPFAVAQKEILKIL--------------KGKVVVGHAIHNDFKALKYFHPKHMTR 102

Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and replication. It may carry out its function by degrading viral RNAs as part of the IFN-regulated antiviral response. Length = 157

>gnl|CDD|99848 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins

 Score = 87.2 bits (217), Expect = 2e-21
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 21/114 (18%)

Query: 138 VAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
            A+DCEM     G    L+L  RV +VDE+  V+    V+P   + +Y    +G+TEE +
Sbjct: 1   FALDCEMCYTTDG----LEL-TRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEML 55

Query: 196 KNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP 248
           +N    L++V+ K+L +++                +LVGH LE+DL +L++ +P
Sbjct: 56  ENVTTTLEDVQKKLLSLISPDT-------------ILVGHSLENDLKALKLIHP 96

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T. Length = 150

>gnl|CDD|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases

 Score = 82.3 bits (204), Expect = 1e-19
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 18/116 (15%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDED---ENVIFHTYVQPQLPVTNYRYEVTGLTEED 194
           V +DCE  G       D    +  VD D      +F TYV+P  P+T+Y  E+ G+T E 
Sbjct: 3   VVIDCETTGLDPGK--DEIIEIAAVDVDGGEIIEVFDTYVKPDRPITDYATEIHGITPEM 60

Query: 195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDH 250
           + +A   +EV +++LE L                 L+ G+    DL  L++ +P  
Sbjct: 61  LDDAPTFEEVLEELLEFLRGRI-------------LVAGNSAHFDLRFLKLEHPRL 103

Length = 169

>gnl|CDD|99840 cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins

 Score = 72.7 bits (179), Expect = 6e-16
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 13/111 (11%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIK 196
           VA+DCEMVG           R+  VD     V+  + V+P + VT++R   +G+T  D++
Sbjct: 1   VALDCEMVG--LADGDSEVVRISAVDVLTGEVLIDSLVRPSVRVTDWRTRFSGVTPADLE 58

Query: 197 NAMPLKEVKDKILEILNNGESTGRLMLDD--GKARLLVGHGLEHDLDSLRM 245
            A    +    I      G    R  L        +LVGH L++DLD+LRM
Sbjct: 59  EA---AKAGKTI-----FGWEAARAALWKFIDPDTILVGHSLQNDLDALRM 101

This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong preference for single-stranded RNA. Length = 161

>gnl|CDD|216200 pfam00929, RNase_T, Exonuclease

 Score = 70.1 bits (172), Expect = 6e-15
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 138 VAMDCEMVGGGSNGT--LDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           V +DCE  G        +++ A   +  E+   +F TYV+P+  +T+   E  G+T E +
Sbjct: 1   VVIDCETTGLDPEKDEIIEIAAVSIVGGENIGPVFDTYVKPERLITDEATEFHGITPEML 60

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP 248
           +NA   +EV +  LE L         +L    A   VG  L  DL  L++  P
Sbjct: 61  RNAPSFEEVLEAFLEFLK-----KLKILVGHNASFDVGFLLYDDLRFLKLPMP 108

This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III.;. Length = 161

>gnl|CDD|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 26/110 (23%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVC-----LVDEDENVI--FHTYVQPQLPVTNYRYEVTGL 190
           V  D E  G           R+       VD    ++  F T V P  P+      + G+
Sbjct: 1   VVFDTETTGLDPKK-----DRIIEIGAVKVDGGIEIVERFETLVNPGRPIPPEATAIHGI 55

Query: 191 TEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
           T+E + +A P +EV  + LE L                R+LV H    DL
Sbjct: 56  TDEMLADAPPFEEVLPEFLEFL--------------GGRVLVAHNASFDL 91

DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others. Length = 159

>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 14/83 (16%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 229
           F  +++P  P++ +  E+TG+T++ ++NA  ++EV +K  E                K  
Sbjct: 226 FQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKFKEFF--------------KDS 271

Query: 230 LLVGHGLEHDLDSLRMNYPDHML 252
           +LV H    D+  L  N+    L
Sbjct: 272 ILVAHNASFDIGFLNTNFEKVGL 294

This model describes a polypeptide chain of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model [DNA metabolism, DNA replication, recombination, and repair]. Length = 1213

>gnl|CDD|99836 cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
             LVD     I   F +YV+P +   ++++  E+TG+T+ED+ NA    EV  + LE L 
Sbjct: 28  AVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVLKEFLEWLG 87

Query: 214 N 214
            
Sbjct: 88  K 88

This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo. Length = 176

>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 14/83 (16%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 229
           F  +++P  P++    E+TG+T+E ++NA  ++EV +K  E +                 
Sbjct: 457 FQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEKFREFI--------------GDS 502

Query: 230 LLVGHGLEHDLDSLRMNYPDHML 252
           +LV H    D+  L  NY  + L
Sbjct: 503 ILVAHNASFDMGFLNTNYEKYGL 525

Length = 1444

>gnl|CDD|236085 PRK07740, PRK07740, hypothetical protein; Provisional

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 164 EDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLML 223
           E E   F++ V+P+ P+  +  E+TG+T ED+  A PL EV  +    +           
Sbjct: 91  EVETDTFYSLVKPKRPIPEHILELTGITAEDVAFAPPLAEVLHRFYAFIG---------- 140

Query: 224 DDGKARLLVGHGLEHDLDSLR 244
               A +LV H   HD   LR
Sbjct: 141 ----AGVLVAHHAGHDKAFLR 157

Length = 244

>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 16/89 (17%)

Query: 164 EDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRL 221
           ++  +I  F  +++P  P++ +  E+TG+T++ +K+A  ++EV  K  E   +       
Sbjct: 447 KNGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPKFKEFCGD------- 499

Query: 222 MLDDGKARLLVGHGLEHDLDSLRMNYPDH 250
                   +LV H    D+  +  NY   
Sbjct: 500 -------SILVAHNASFDVGFINTNYEKL 521

Length = 1437

>gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 163 DEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLM 222
                  FHT V P+ P+    +++ G+T+E + +A    EV  + L+ +          
Sbjct: 43  GRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDFIGGL------- 95

Query: 223 LDDGKARLLVGHGLEHDLDSLRM 245
                 RLLV H    D+  LR+
Sbjct: 96  ------RLLVAHNAAFDVGFLRV 112

Length = 243

>gnl|CDD|99835 cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE 216
           FH Y+ P+  +    ++V G+T+E + +     E+ D+ L+ +   E
Sbjct: 37  FHVYINPERDIPEEAFKVHGITDEFLADKPKFAEIADEFLDFIRGAE 83

This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex. Length = 167

>gnl|CDD|130473 TIGR01406, dnaQ_proteo, DNA polymerase III, epsilon subunit, Proteobacterial

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE 216
           FH YV P+  +     +V G+T+E + +    KE+ D+ L+ +   E
Sbjct: 38  FHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIADEFLDFIGGSE 84

This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in Pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria [DNA metabolism, DNA replication, recombination, and repair]. Length = 225

>gnl|CDD|236148 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 159 VCLVDEDENV-IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG 215
             +V++ E +  F ++V P+ P+  +  E+TG++EE +K A   ++V  +I+E+L   
Sbjct: 28  AVVVEDGEILERFSSFVNPERPIPPFITELTGISEEMVKQAPLFEDVAPEIVELLEGA 85

Length = 928

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG2249	280	consensus 3'-5' exonuclease [Replication, recombin	99.97
cd06143	174	PAN2_exo DEDDh 3'-5' exonuclease domain of the euk	99.89
cd06149	157	ISG20 DEDDh 3'-5' exonuclease domain of Interferon	99.89
cd06145	150	REX1_like DEDDh 3'-5' exonuclease domain of RNA ex	99.86
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.85
cd06144	152	REX4_like DEDDh 3'-5' exonuclease domain of RNA ex	99.85
KOG2248	380	consensus 3'-5' exonuclease [Replication, recombin	99.8
cd06137	161	DEDDh_RNase DEDDh 3'-5' exonuclease domain of the	99.78
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.74
PRK07247	195	DNA polymerase III subunit epsilon; Validated	99.69
PRK05711	240	DNA polymerase III subunit epsilon; Provisional	99.68
TIGR01406	225	dnaQ_proteo DNA polymerase III, epsilon subunit, P	99.68
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.65
cd06130	156	DNA_pol_III_epsilon_like an uncharacterized bacter	99.64
TIGR00573	217	dnaq exonuclease, DNA polymerase III, epsilon subu	99.64
PRK09146	239	DNA polymerase III subunit epsilon; Validated	99.64
PRK06310	250	DNA polymerase III subunit epsilon; Validated	99.63
PRK07740	244	hypothetical protein; Provisional	99.63
COG2176	1444	PolC DNA polymerase III, alpha subunit (gram-posit	99.61
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.61
PRK06195	309	DNA polymerase III subunit epsilon; Validated	99.61
PRK05601	377	DNA polymerase III subunit epsilon; Validated	99.61
cd06131	167	DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl	99.59
PRK09145	202	DNA polymerase III subunit epsilon; Validated	99.59
PRK06807	313	DNA polymerase III subunit epsilon; Validated	99.58
PRK07983	219	exodeoxyribonuclease X; Provisional	99.56
PRK06722	281	exonuclease; Provisional	99.56
PRK08517	257	DNA polymerase III subunit epsilon; Provisional	99.55
cd06136	177	TREX1_2 DEDDh 3'-5' exonuclease domain of three pr	99.54
PRK06063	313	DNA polymerase III subunit epsilon; Provisional	99.54
PRK06309	232	DNA polymerase III subunit epsilon; Validated	99.52
PRK07246	820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.52
KOG3608	467	consensus Zn finger proteins [General function pre	99.51
PRK07942	232	DNA polymerase III subunit epsilon; Provisional	99.51
smart00479	169	EXOIII exonuclease domain in DNA-polymerase alpha	99.51
PRK07748	207	sporulation inhibitor KapD; Provisional	99.49
PRK05168	211	ribonuclease T; Provisional	99.48
PRK07883	557	hypothetical protein; Validated	99.47
COG0847	243	DnaQ DNA polymerase III, epsilon subunit and relat	99.47
cd06134	189	RNaseT DEDDh 3'-5' exonuclease domain of RNase T.	99.46
TIGR01298	200	RNaseT ribonuclease T. in gamma-subdivision Proteo	99.46
PRK08074	928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.45
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.43
TIGR01405	1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	99.43
TIGR01407	850	dinG_rel DnaQ family exonuclease/DinG family helic	99.42
PRK05359	181	oligoribonuclease; Provisional	99.4
cd06127	159	DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh	99.38
PF00929	164	RNase_T: Exonuclease; InterPro: IPR013520 This ent	99.38
PRK09182	294	DNA polymerase III subunit epsilon; Validated	99.37
cd06138	183	ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o	99.35
cd06135	173	Orn DEDDh 3'-5' exonuclease domain of oligoribonuc	99.35
KOG3576	267	consensus Ovo and related transcription factors [T	99.31
cd06133	176	ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o	99.27
KOG3608	467	consensus Zn finger proteins [General function pre	99.26
PTZ00315	582	2'-phosphotransferase; Provisional	99.24
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.17
KOG3576	267	consensus Ovo and related transcription factors [T	99.16
PRK11779	476	sbcB exonuclease I; Provisional	99.13
PRK00448	1437	polC DNA polymerase III PolC; Validated	99.1
PHA02768	55	hypothetical protein; Provisional	98.92
PHA00733	128	hypothetical protein	98.85
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.78
PHA02768	55	hypothetical protein; Provisional	98.73
PHA00733	128	hypothetical protein	98.57
PLN03086	567	PRLI-interacting factor K; Provisional	98.37
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.27
PHA00616	44	hypothetical protein	98.24
PHA00616	44	hypothetical protein	98.22
PHA00732	79	hypothetical protein	98.2
KOG3993	500	consensus Transcription factor (contains Zn finger	98.17
PLN03086	567	PRLI-interacting factor K; Provisional	98.1
KOG3993	500	consensus Transcription factor (contains Zn finger	98.04
KOG3242	208	consensus Oligoribonuclease (3'->5' exoribonucleas	98.01
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.9
cd05160	199	DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain	97.77
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.74
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.71
COG1949	184	Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA	97.71
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.38
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.36
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.34
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.23
PHA00732	79	hypothetical protein	97.2
KOG0542	280	consensus Predicted exonuclease [Replication, reco	97.19
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.08
smart00355	26	ZnF_C2H2 zinc finger.	96.7
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.7
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.66
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.62
smart00355	26	ZnF_C2H2 zinc finger.	96.57
cd06125	96	DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas	96.37
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.36
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.25
PF01612	176	DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00	96.01
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.01
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.54
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.51
PRK04860	160	hypothetical protein; Provisional	95.44
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.14
COG5189	423	SFP1 Putative transcriptional repressor regulating	94.66
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.52
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.51
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.45
COG2925	475	SbcB Exonuclease I [DNA replication, recombination	93.84
cd05780	195	DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom	93.75
cd05785	207	DNA_polB_like2_exo Uncharacterized bacterial subgr	93.67
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.28
COG5048	467	FOG: Zn-finger [General function prediction only]	93.08
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	93.04
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.92
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	92.8
cd05781	188	DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of	90.68
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	90.43
cd06139	193	DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease	90.22
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	89.04
COG4049	65	Uncharacterized protein containing archaeal-type C	88.88
cd05784	193	DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of	88.54
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.14
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	88.01
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	87.94
PRK04860	160	hypothetical protein; Provisional	87.31
PF03104	325	DNA_pol_B_exo1: DNA polymerase family B, exonuclea	87.25
PF13482	164	RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A	87.03
COG5018	210	KapD Inhibitor of the KinA pathway to sporulation,	86.79
cd06146	193	mut-7_like_exo DEDDy 3'-5' exonuclease domain of C	86.55
PRK05755	880	DNA polymerase I; Provisional	86.33
cd05779	204	DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai	85.87
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	85.52
KOG1146	1406	consensus Homeobox protein [General function predi	85.34
PF15135	278	UPF0515: Uncharacterised protein UPF0515	85.23
KOG2893	341	consensus Zn finger protein [General function pred	84.22
cd05776	234	DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas	84.03
cd05783	204	DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of	84.02
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	82.15
COG3364	112	Zn-ribbon containing protein [General function pre	80.73
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	80.16

>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair]

Probab=99.97  E-value=7e-32  Score=211.72  Aligned_cols=208  Identities=40%  Similarity=0.719  Sum_probs=152.1

Q ss_pred             cccccccccCCHHHHHHhhhhcCCCCCccccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccccCChHHHH
Q 025404           16 KCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (253)
Q Consensus        16 ~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~   95 (253)
                      +|..|.+.|.-...+..|+ +..|....++|..|.+.-.....+..++..+.+- .|...|+...|..|.-.-.......
T Consensus         2 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (280)
T KOG2249|consen    2 KASSCAQQFNKKEHLPNHK-VSRHKLHERKCGKCKKVARSFESNEEGLIAPLPK-EGKNIFSQRGNRFKATIKASPGKRR   79 (280)
T ss_pred             CccHHHHHhCccccCcccc-chhhccCcchhhhHHHhccCcccccccccCCCCc-ccCccccchhhHHHhhHhhcCCcch
Confidence            3567777787777777777 2114433337888877777777777776444443 6666666665555543322222233


Q ss_pred             HHHHHccCCCCCCccccCccchhhhhhccccccccccCCCceeeeecccccCCCCCcccccceeeeecCCCCeEEeeecc
Q 025404           96 KHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ  175 (253)
Q Consensus        96 ~H~~~h~~~~~~~C~~~f~~~~~l~~h~~~~~~~r~~~~~~~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~~~~~~v~  175 (253)
                      .|+..+.+.    |..+    ..+.+      ..+.....+++|+||||+|.|.++..+++|+++|||..|+++||.||+
T Consensus        80 ~~~~~~~~~----~~~~----~~~~k------~s~~~~~~r~vAmDCEMVG~Gp~G~~s~lARvSIVN~~G~VvyDkyVk  145 (280)
T KOG2249|consen   80 IHQGSCQAS----CRMA----ALGSK------DSRMGSLTRVVAMDCEMVGVGPDGRESLLARVSIVNYHGHVVYDKYVK  145 (280)
T ss_pred             hhhcccCCC----cccc----ccchh------hccccccceEEEEeeeEeccCCCccceeeeEEEEeeccCcEeeeeecC
Confidence            333222211    1100    00000      011222236899999999999999999999999999999999999999


Q ss_pred             CCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCCCCCC
Q 025404          176 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR  253 (253)
Q Consensus       176 P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~~~~  253 (253)
                      |..+|+||+++++||++++|.+|++|+.|+.+++++|              .|+|||||.+.+||.+|.+.||+.+||
T Consensus       146 P~~~VtDyRT~vSGIrpehm~~A~pf~~aQ~ev~klL--------------~gRIlVGHaLhnDl~~L~l~hp~s~iR  209 (280)
T KOG2249|consen  146 PTEPVTDYRTRVSGIRPEHMRDAMPFKVAQKEVLKLL--------------KGRILVGHALHNDLQALKLEHPRSMIR  209 (280)
T ss_pred             CCcccccceeeecccCHHHhccCccHHHHHHHHHHHH--------------hCCEEeccccccHHHHHhhhCchhhhc
Confidence            9999999999999999999999999999999999999              899999999999999999999999997

>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2

Probab=99.89  E-value=3e-23  Score=156.94  Aligned_cols=102  Identities=26%  Similarity=0.439  Sum_probs=88.8

Q ss_pred             eeeecccccCCC-------CCccc-------ccceeeeec----CCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCC
Q 025404          138 VAMDCEMVGGGS-------NGTLD-------LCARVCLVD----EDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM  199 (253)
Q Consensus       138 ~~~dcE~~g~~~-------~~~~~-------ll~~v~iv~----~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~  199 (253)
                      +++|||++|.+.       ++..+       .++|+++||    .+|+++++.||+|..+|.+|+|+++|||+++|.+++
T Consensus         1 ~a~d~e~v~~~~~~~~~~~~g~~~~~~~~~~~LaRVsiVd~~~~~~g~vllD~~VkP~~~V~DYrT~~SGIt~~~L~~a~   80 (174)
T cd06143           1 VAIDAEFVKLKPEETEIRSDGTKSTIRPSQMSLARVSVVRGEGELEGVPFIDDYISTTEPVVDYLTRFSGIKPGDLDPKT   80 (174)
T ss_pred             CceeeeEEEecchhceecCCCcEeeeccCCceeEEEEEEcCCCCcCCCEEEeeeECCCCCccCcCccccccCHHHcCccc
Confidence            467888887664       44441       249999999    789999999999999999999999999999998874


Q ss_pred             ------CHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCCCCC
Q 025404          200 ------PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML  252 (253)
Q Consensus       200 ------~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~~~  252 (253)
                            ++++++.+|++++.             .++|||||++++||++|+|.||..++
T Consensus        81 ~~~~~~t~~~v~~~l~~li~-------------~~tILVGHsL~nDL~aL~l~hp~~~v  126 (174)
T cd06143          81 SSKNLTTLKSAYLKLRLLVD-------------LGCIFVGHGLAKDFRVINIQVPKEQV  126 (174)
T ss_pred             cccccCCHHHHHHHHHHHcC-------------CCCEEEeccchhHHHHhcCcCCCcce
Confidence                  69999999999993             68899999999999999999997654

PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.

>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins

Probab=99.89  E-value=7.8e-23  Score=155.59  Aligned_cols=99  Identities=39%  Similarity=0.788  Sum_probs=91.0

Q ss_pred             eeeecccccCCCCC-cccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhcCC
Q 025404          138 VAMDCEMVGGGSNG-TLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  216 (253)
Q Consensus       138 ~~~dcE~~g~~~~~-~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~~~  216 (253)
                      +++||||+|.+..+ ..++ +++.+++.+|.++++.+|+|..+|+++++++||||+++++++|++++|+.++.+++    
T Consensus         1 v~~D~EttGl~~~~~~~~i-~~i~~v~~~g~~~~~~lv~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~l~~~l----   75 (157)
T cd06149           1 VAIDCEMVGTGPGGRESEL-ARCSIVNYHGDVLYDKYIRPEGPVTDYRTRWSGIRRQHLVNATPFAVAQKEILKIL----   75 (157)
T ss_pred             CEEEeEeccccCCCCeEEE-EEEEEEeCCCCEEEEEeECCCCccCccceECCCCCHHHHhcCCCHHHHHHHHHHHc----
Confidence            48999999998653 3455 88999988999999999999999999999999999999999999999999999999    


Q ss_pred             CCCcccccCCCCeEEEeechhhhhhhhcCCCCCCC
Q 025404          217 STGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM  251 (253)
Q Consensus       217 ~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~~  251 (253)
                                +++||||||+.||++||++.++.+.
T Consensus        76 ----------~~~vlV~Hn~~~D~~~l~~~~~~~~  100 (157)
T cd06149          76 ----------KGKVVVGHAIHNDFKALKYFHPKHM  100 (157)
T ss_pred             ----------CCCEEEEeCcHHHHHHhcccCCCcC
Confidence                      8899999999999999999988754

Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and repli

>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins

Probab=99.86  E-value=1e-21  Score=148.38  Aligned_cols=95  Identities=37%  Similarity=0.687  Sum_probs=86.6

Q ss_pred             eeeecccccCCCCCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCC-CHHHHHHHHHHHHhcCC
Q 025404          138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM-PLKEVKDKILEILNNGE  216 (253)
Q Consensus       138 ~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~-~~~~v~~~l~~~~~~~~  216 (253)
                      +++||||+|.+.+  .++ +++.+++.+|.+.|+++|+|..+|+++++++||||+++|+++| ++++|++++.+++    
T Consensus         1 ~~iD~E~~g~~~g--~ei-~~i~~v~~~~~~~f~~lv~P~~~i~~~~t~itGIt~~~l~~a~~~~~~v~~~~~~fl----   73 (150)
T cd06145           1 FALDCEMCYTTDG--LEL-TRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEMLENVTTTLEDVQKKLLSLI----   73 (150)
T ss_pred             CEEeeeeeeecCC--CEE-EEEEEEeCCCCEEEEEeECCCCccchhccCcCCCCHHHhccCCCCHHHHHHHHHHHh----
Confidence            4799999998654  555 9999999999999999999999999999999999999999995 9999999999999    


Q ss_pred             CCCcccccCCC-CeEEEeechhhhhhhhcCCCCC
Q 025404          217 STGRLMLDDGK-ARLLVGHGLEHDLDSLRMNYPD  249 (253)
Q Consensus       217 ~~~~~~~~~~~-~~~lv~h~~~~D~~~l~~~~~~  249 (253)
                                . +.+|||||+.||++||+..+++
T Consensus        74 ----------~~~~vlVgHn~~fD~~fL~~~~~~   97 (150)
T cd06145          74 ----------SPDTILVGHSLENDLKALKLIHPR   97 (150)
T ss_pred             ----------CCCCEEEEcChHHHHHHhhccCCC
Confidence                      5 7899999999999999987654

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T.

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.85  E-value=2.6e-22  Score=158.86  Aligned_cols=112  Identities=26%  Similarity=0.407  Sum_probs=93.0

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhcCCCC---Ccc-ccccccccccCHHHHhhhh---CCCCCCCcCCcccccc----
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKISYHSV---HQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDR----   79 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~---~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~~~f~~~----   79 (253)
                      ..-.|+|+.|+|.|.+.++|.+|+++  |..   .+. .|+.|||.|.+...|+.|+   +-++.|.+|||.|+..    
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~--H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQ  204 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQT--HRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQ  204 (279)
T ss_pred             cCCceeccccccccccccccchhhcc--cccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhh
Confidence            44569999999999999999999999  753   333 9999999999999999999   4577888888888743    


Q ss_pred             ------------cccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhcc
Q 025404           80 ------------GCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISG  124 (253)
Q Consensus        80 ------------~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~  124 (253)
                                  +|..|+|+|.++++|+.||++|++.|+|+   |+++|++.+-|.+|.+
T Consensus       205 GHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  205 GHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence                        38888888888888888888888888876   7888888888888874

>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

Probab=99.85  E-value=5.2e-21  Score=145.06  Aligned_cols=99  Identities=51%  Similarity=0.902  Sum_probs=89.9

Q ss_pred             eeeecccccCCCCC-cccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhcCC
Q 025404          138 VAMDCEMVGGGSNG-TLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  216 (253)
Q Consensus       138 ~~~dcE~~g~~~~~-~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~~~  216 (253)
                      +++||||||..... ..++ +.+.+++.++.+.++.+++|..+++++++++||||+++++++|+|.+++.+|.+++    
T Consensus         1 v~lD~EttGl~~~~~~~~i-~~v~~v~~~~~~~~~~~v~P~~~i~~~~~~ihGIt~~~v~~a~~~~~~~~~l~~~l----   75 (152)
T cd06144           1 VALDCEMVGVGPDGSESAL-ARVSIVNEDGNVVYDTYVKPQEPVTDYRTAVSGIRPEHLKDAPDFEEVQKKVAELL----   75 (152)
T ss_pred             CEEEEEeecccCCCCEEEE-EEEEEEeCCCCEEEEEEECCCCCCCcccccCCCCCHHHHcCCCCHHHHHHHHHHHh----
Confidence            47999999987553 4555 88899888899999999999999999999999999999999999999999999999    


Q ss_pred             CCCcccccCCCCeEEEeechhhhhhhhcCCCCCCC
Q 025404          217 STGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM  251 (253)
Q Consensus       217 ~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~~  251 (253)
                                .+.+|||||+.||++||++..|++.
T Consensus        76 ----------~~~vlVgHn~~fD~~~L~~~~~~~~  100 (152)
T cd06144          76 ----------KGRILVGHALKNDLKVLKLDHPKKL  100 (152)
T ss_pred             ----------CCCEEEEcCcHHHHHHhcCcCCCcc
Confidence                      7789999999999999999888754

This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clus

>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair]

Probab=99.80  E-value=9.5e-20  Score=154.20  Aligned_cols=104  Identities=41%  Similarity=0.790  Sum_probs=94.8

Q ss_pred             ccCCCceeeeecccccCCCCCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCC-CCHHHHHHHHH
Q 025404          131 TCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNA-MPLKEVKDKIL  209 (253)
Q Consensus       131 ~~~~~~~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~-~~~~~v~~~l~  209 (253)
                      .....+++++|||||....+  .++ +||.+||.+++++++.+|+|..||.||+++++|||+++++++ .++++|+++|.
T Consensus       212 v~~~~~i~AlDCEm~~te~g--~el-~RVt~VD~~~~vi~D~fVkP~~~VvDy~T~~SGIT~~~~e~~t~tl~dvq~~l~  288 (380)
T KOG2248|consen  212 VSKSPNIFALDCEMVVTENG--LEL-TRVTAVDRDGKVILDTFVKPNKPVVDYNTRYSGITEEDLENSTITLEDVQKELL  288 (380)
T ss_pred             CCCCCCeEEEEeeeeeeccc--eee-EEeeeeeccCcEEeEEeecCCCcccccccccccccHHHHhcCccCHHHHHHHHH
Confidence            45567799999999997544  566 999999999999999999999999999999999999999876 79999999999


Q ss_pred             HHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCCC
Q 025404          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDH  250 (253)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~  250 (253)
                      .+++             .++|||||+++.||++|++.||.+
T Consensus       289 ~~~~-------------~~TILVGHSLenDL~aLKl~H~~V  316 (380)
T KOG2248|consen  289 ELIS-------------KNTILVGHSLENDLKALKLDHPSV  316 (380)
T ss_pred             hhcC-------------cCcEEEeechhhHHHHHhhhCCce
Confidence            9994             889999999999999999999875

>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins

Probab=99.78  E-value=2.8e-19  Score=136.78  Aligned_cols=95  Identities=34%  Similarity=0.628  Sum_probs=80.0

Q ss_pred             eeeecccccCCCCCcccccceeeeecC-CCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCC-------HHHHHHHHH
Q 025404          138 VAMDCEMVGGGSNGTLDLCARVCLVDE-DENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMP-------LKEVKDKIL  209 (253)
Q Consensus       138 ~~~dcE~~g~~~~~~~~ll~~v~iv~~-~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~-------~~~v~~~l~  209 (253)
                      +++||||||.+.. ..++ .++.+++. +|++.++.+|+|..+|+++++++||||++++.++|+       |+++++++.
T Consensus         1 v~lD~EttGl~~~-~d~i-i~Ig~V~v~~g~i~~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~~~~~~~~~~~~~~~   78 (161)
T cd06137           1 VALDCEMVGLADG-DSEV-VRISAVDVLTGEVLIDSLVRPSVRVTDWRTRFSGVTPADLEEAAKAGKTIFGWEAARAALW   78 (161)
T ss_pred             CEEEeeeeeEcCC-CCEE-EEEEEEEcCCCeEEEeccccCCCCCCccceeccCCCHHHHhhhhhcCCccccHHHHHHHHH
Confidence            4799999997643 2233 55555554 788899999999999999999999999999998875       469999999


Q ss_pred             HHHhcCCCCCcccccCCCC-eEEEeechhhhhhhhcCCCC
Q 025404          210 EILNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRMNYP  248 (253)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~-~~lv~h~~~~D~~~l~~~~~  248 (253)
                      +++              ++ .+|||||+.||++||++.++
T Consensus        79 ~~i--------------~~~~vlVgHn~~fD~~fL~~~~~  104 (161)
T cd06137          79 KFI--------------DPDTILVGHSLQNDLDALRMIHT  104 (161)
T ss_pred             Hhc--------------CCCcEEEeccHHHHHHHHhCcCC
Confidence            999              65 89999999999999998654

This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong prefere

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.74  E-value=4.6e-19  Score=140.54  Aligned_cols=101  Identities=18%  Similarity=0.315  Sum_probs=90.1

Q ss_pred             ccccccccccCHHHHhhhh--------CCCCCCCcCCccccccc--------------ccccccccCChHHHHHHHHHcc
Q 025404           45 KCAVCQKLSKSFESLREHL--------TGPLSKAHCSGIFSDRG--------------CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~--------~~~~~C~~C~~~f~~~~--------------C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      +|..||+.+++.++|.+|.        .+.+.|+.|+|.|+...              |.+|||.|.+..-|+.|+|+|+
T Consensus       132 ~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHT  211 (279)
T KOG2462|consen  132 KCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHT  211 (279)
T ss_pred             eccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhccccccc
Confidence            9999999999999999997        45689999999998752              9999999999999999999999


Q ss_pred             CCCCCC---ccccCccchhhhhhccccccccccCCCceeeeecccccCCCCCcc
Q 025404          103 LSAPVP---FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTL  153 (253)
Q Consensus       103 ~~~~~~---C~~~f~~~~~l~~h~~~~~~~r~~~~~~~~~~dcE~~g~~~~~~~  153 (253)
                      |||||.   |+++|+.+++|+.|+..|..        +..+.|..|++.|....
T Consensus       212 GEKPF~C~hC~kAFADRSNLRAHmQTHS~--------~K~~qC~~C~KsFsl~S  257 (279)
T KOG2462|consen  212 GEKPFSCPHCGKAFADRSNLRAHMQTHSD--------VKKHQCPRCGKSFALKS  257 (279)
T ss_pred             CCCCccCCcccchhcchHHHHHHHHhhcC--------CccccCcchhhHHHHHH
Confidence            999997   99999999999999976654        35778999998765543

>PRK07247 DNA polymerase III subunit epsilon; Validated

Probab=99.69  E-value=8.2e-17  Score=126.23  Aligned_cols=94  Identities=23%  Similarity=0.334  Sum_probs=81.2

Q ss_pred             CceeeeecccccCC-CCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHH
Q 025404          135 PKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (253)
Q Consensus       135 ~~~~~~dcE~~g~~-~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~  211 (253)
                      ..++++|+||+|.. .+.++++ +.|.+.  +|.+  .++.+|+|..+++++.+++||||+++|+++|++.+|+.++.++
T Consensus         5 ~~~vvlD~EtTGl~~~~eIIeI-gaV~v~--~g~~~~~f~~lv~P~~~i~~~~~~lhGIt~~~v~~ap~~~evl~~f~~f   81 (195)
T PRK07247          5 ETYIAFDLEFNTVNGVSHIIQV-SAVKYD--DHKEVDSFDSYVYTDVPLQSFINGLTGITADKIADAPKVEEVLAAFKEF   81 (195)
T ss_pred             CeEEEEEeeCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECCCCCCCccceecCCCCHHHHhCCCCHHHHHHHHHHH
Confidence            46899999999965 3445565 767764  3433  7999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCCeEEEeechh-hhhhhhcC
Q 025404          212 LNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLRM  245 (253)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lv~h~~~-~D~~~l~~  245 (253)
                      +              ++.+|||||+. ||+.||+-
T Consensus        82 ~--------------~~~~lVaHNa~~fD~~fL~~  102 (195)
T PRK07247         82 V--------------GELPLIGYNAQKSDLPILAE  102 (195)
T ss_pred             H--------------CCCeEEEEeCcHhHHHHHHH
Confidence            9              78899999997 89999975

>PRK05711 DNA polymerase III subunit epsilon; Provisional

Probab=99.68  E-value=7.6e-17  Score=130.25  Aligned_cols=98  Identities=21%  Similarity=0.408  Sum_probs=84.3

Q ss_pred             CceeeeecccccCCC---CCcccccceeeeecCCCC-eEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHH
Q 025404          135 PKAVAMDCEMVGGGS---NGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (253)
Q Consensus       135 ~~~~~~dcE~~g~~~---~~~~~ll~~v~iv~~~~~-~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~  210 (253)
                      .+++++|+||||...   +.++++ +.|.+.+.... ..|+.+++|..+|++...++||||+++|.++|+|.+|+.++.+
T Consensus         4 ~r~vvlDtETTGldp~~~drIIEI-GaV~v~~~~~~~~~f~~~i~P~~~i~~~a~~VHGIT~e~l~~~p~f~ev~~~f~~   82 (240)
T PRK05711          4 MRQIVLDTETTGLNQREGHRIIEI-GAVELINRRLTGRNFHVYIKPDRLVDPEALAVHGITDEFLADKPTFAEVADEFLD   82 (240)
T ss_pred             CeEEEEEeeCCCcCCCCCCeEEEE-EEEEEECCEEeccEEEEEECcCCcCCHHHhhhcCCCHHHHcCCCCHHHHHHHHHH
Confidence            468999999999764   467777 88887643221 1688999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          211 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                      ++              ++.+|||||+.||+.||+...
T Consensus        83 fi--------------~~~~lVaHNa~FD~~fL~~el  105 (240)
T PRK05711         83 FI--------------RGAELIIHNAPFDIGFMDYEF  105 (240)
T ss_pred             Hh--------------CCCEEEEEccHHhHHHHHHHH
Confidence            99              788999999999999998643

>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial

Probab=99.68  E-value=9.3e-17  Score=129.06  Aligned_cols=96  Identities=25%  Similarity=0.381  Sum_probs=82.9

Q ss_pred             eeeeecccccCCC---CCcccccceeeeecCCCC-eEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHH
Q 025404          137 AVAMDCEMVGGGS---NGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (253)
Q Consensus       137 ~~~~dcE~~g~~~---~~~~~ll~~v~iv~~~~~-~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~  212 (253)
                      ++++|+||+|...   +.++++ +.+.+.+.... ..|+.+++|..++++..+++||||+++|+++|+|.+|+.++.+++
T Consensus         2 ~vvlD~ETTGl~p~~~d~IIEI-gav~~~~~~~~~~~f~~~i~P~~~i~~~a~~vhGIt~e~l~~~p~f~ev~~~f~~fi   80 (225)
T TIGR01406         2 QIILDTETTGLDPKGGHRIVEI-GAVELVNRMLTGDNFHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIADEFLDFI   80 (225)
T ss_pred             EEEEEeeCCCcCCCCCCeEEEE-EEEEEECCcEecceEEEEECcCCCCCHHHHhccCCCHHHHhCCCCHHHHHHHHHHHh
Confidence            6899999999764   356777 88877653211 268999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                                    ++.+|||||+.||+.||+...
T Consensus        81 --------------~~~~lVaHNa~FD~~fL~~el  101 (225)
T TIGR01406        81 --------------GGSELVIHNAAFDVGFLNYEL  101 (225)
T ss_pred             --------------CCCEEEEEecHHHHHHHHHHH
Confidence                          788999999999999998643

This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria.

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.65  E-value=1.3e-16  Score=142.57  Aligned_cols=67  Identities=22%  Similarity=0.528  Sum_probs=60.1

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh---------CCCCCCC---cCCcccc
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---------TGPLSKA---HCSGIFS   77 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---------~~~~~C~---~C~~~f~   77 (253)
                      ..-|.+|-.|-+..+.++.|+.|.|+  |+|++| +|.+||+.|.++.+|+.|+         ..++.|+   +|-+.|.
T Consensus       602 ~TdPNqCiiC~rVlSC~saLqmHyrt--HtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft  679 (958)
T KOG1074|consen  602 RTDPNQCIICLRVLSCPSALQMHYRT--HTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT  679 (958)
T ss_pred             cCCccceeeeeecccchhhhhhhhhc--ccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccc
Confidence            34578999999999999999999999  999999 9999999999999999998         3467888   8888887


Q ss_pred             cc
Q 025404           78 DR   79 (253)
Q Consensus        78 ~~   79 (253)
                      ..
T Consensus       680 n~  681 (958)
T KOG1074|consen  680 NA  681 (958)
T ss_pred             cc
Confidence            64

>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III

Probab=99.64  E-value=3.1e-16  Score=119.47  Aligned_cols=93  Identities=26%  Similarity=0.382  Sum_probs=81.6

Q ss_pred             eeeeecccccCCCCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhc
Q 025404          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (253)
Q Consensus       137 ~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~  214 (253)
                      ++++|+||+|...+..+++ +.+.+.  .+++  .++.+++|..++++...+++|||++++.+++++.+++++|.+++  
T Consensus         1 ~v~~D~Ettg~~~~~ii~i-g~v~~~--~~~~~~~~~~~i~p~~~~~~~~~~i~GIt~e~l~~~~~~~~v~~~l~~~l--   75 (156)
T cd06130           1 FVAIDFETANADRASACSI-GLVKVR--DGQIVDTFYTLIRPPTRFDPFNIAIHGITPEDVADAPTFPEVWPEIKPFL--   75 (156)
T ss_pred             CEEEEEeCCCCCCCceEEE-EEEEEE--CCEEEEEEEEEeCcCCCCChhhccccCcCHHHHhcCCCHHHHHHHHHHHh--
Confidence            4789999999777777776 777763  4444  57899999999999999999999999999999999999999999  


Q ss_pred             CCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          215 GESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       215 ~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                                  .+.++||||+.||+.+|+..
T Consensus        76 ------------~~~~lv~hn~~fD~~~l~~~   95 (156)
T cd06130          76 ------------GGSLVVAHNASFDRSVLRAA   95 (156)
T ss_pred             ------------CCCEEEEeChHHhHHHHHHH
Confidence                        67899999999999999643

This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family

Probab=99.64  E-value=4.6e-16  Score=124.73  Aligned_cols=100  Identities=20%  Similarity=0.367  Sum_probs=84.4

Q ss_pred             CCCceeeeecccccCCCC-CcccccceeeeecCCCC-eEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHH
Q 025404          133 RGPKAVAMDCEMVGGGSN-GTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~~~-~~~~ll~~v~iv~~~~~-~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~  210 (253)
                      ....++++|+||+|.... .++++ +.+.+.+.... ..+..+++|..++++....++|||++++.++|++.+|+.++.+
T Consensus         5 ~~~~fvv~D~ETTGl~~~~~IIeI-gav~v~~~~~~~~~f~~li~P~~~i~~~a~~ihGIt~e~l~~~p~~~ev~~~~~~   83 (217)
T TIGR00573         5 VLDTETTGDNETTGLYAGHDIIEI-GAVEIINRRITGNKFHTYIKPDRPIDPDAIKIHGITDDMLKDKPDFKEIAEDFAD   83 (217)
T ss_pred             EecCEEEEEecCCCCCCCCCEEEE-EEEEEECCCEeeeEEEEEECcCCCCCHHHHhhcCCCHHHHcCCCCHHHHHHHHHH
Confidence            445689999999997632 26666 77776543222 2788999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          211 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                      ++              ++.++||||+.||+.||+-..
T Consensus        84 ~~--------------~~~~lVaHNa~FD~~fL~~~~  106 (217)
T TIGR00573        84 YI--------------RGAELVIHNASFDVGFLNYEF  106 (217)
T ss_pred             Hh--------------CCCEEEEeccHHHHHHHHHHH
Confidence            99              778999999999999998643

All proteins in this family for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the n-terminal region of DinG from some low GC gram positive bacteria. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09146 DNA polymerase III subunit epsilon; Validated

Probab=99.64  E-value=6.5e-16  Score=125.04  Aligned_cols=99  Identities=22%  Similarity=0.313  Sum_probs=84.7

Q ss_pred             ccCCCceeeeecccccCC--CCCcccccceeeeecCCCCe----EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHH
Q 025404          131 TCRGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV----IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEV  204 (253)
Q Consensus       131 ~~~~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~----~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v  204 (253)
                      .-....++++|+||+|..  .+.++++ +.+.+.+  +.+    .+..+++|..+|+...+++||||++++.++|++.+|
T Consensus        43 ~~~~~~~vviD~ETTGl~p~~d~IieI-g~v~v~~--~~i~~~~~~~~li~P~~~i~~~~~~IhGIt~e~l~~ap~~~ev  119 (239)
T PRK09146         43 PLSEVPFVALDFETTGLDAEQDAIVSI-GLVPFTL--QRIRCRQARHWVVKPRRPLEEESVVIHGITHSELQDAPDLERI  119 (239)
T ss_pred             CcccCCEEEEEeECCCCCCCCCcEEEE-EEEEEEC--CeEeecceEEEEECCCCCCChhhhhhcCCCHHHHhCCCCHHHH
Confidence            444667999999999966  3566777 7777733  332    578899999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       205 ~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                      +.++.+++              ++.+|||||+.||+.||+..
T Consensus       120 l~~l~~~~--------------~~~~lVaHna~FD~~fL~~~  147 (239)
T PRK09146        120 LDELLEAL--------------AGKVVVVHYRRIERDFLDQA  147 (239)
T ss_pred             HHHHHHHh--------------CCCEEEEECHHHHHHHHHHH
Confidence            99999999              78899999999999999764

>PRK06310 DNA polymerase III subunit epsilon; Validated

Probab=99.63  E-value=6e-16  Score=126.31  Aligned_cols=101  Identities=17%  Similarity=0.303  Sum_probs=83.2

Q ss_pred             CCceeeeecccccCCC--CCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHH
Q 025404          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~  211 (253)
                      ...++++|+||+|...  +.++++ +.+.+........++.+++|..+|+...+++||||+++|+++|+|.+|..++.++
T Consensus         6 ~~~~v~~D~ETTGl~~~~d~IIEI-a~v~v~~~~~~~~~~~li~P~~~I~~~a~~ihgIt~e~v~~~p~~~ev~~~~~~f   84 (250)
T PRK06310          6 DTEFVCLDCETTGLDVKKDRIIEF-AAIRFTFDEVIDSVEFLINPERVVSAESQRIHHISDAMLRDKPKIAEVFPQIKGF   84 (250)
T ss_pred             CCcEEEEEEeCCCCCCCCCeEEEE-EEEEEECCeEEEEEEEEECcCCCCCHhhhhccCcCHHHHhCCCCHHHHHHHHHHH
Confidence            3568999999999753  567777 7776643211126889999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCC
Q 025404          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP  248 (253)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~  248 (253)
                      +.             .+.+|||||+.||+.||+...+
T Consensus        85 l~-------------~~~~lvghn~~FD~~~L~~~~~  108 (250)
T PRK06310         85 FK-------------EGDYIVGHSVGFDLQVLSQESE  108 (250)
T ss_pred             hC-------------CCCEEEEECHHHHHHHHHHHHH
Confidence            92             2379999999999999976443

>PRK07740 hypothetical protein; Provisional

Probab=99.63  E-value=1.2e-15  Score=124.11  Aligned_cols=99  Identities=29%  Similarity=0.378  Sum_probs=82.8

Q ss_pred             cCCCceeeeecccccCCC---CCcccccceeeeecCCC-CeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHH
Q 025404          132 CRGPKAVAMDCEMVGGGS---NGTLDLCARVCLVDEDE-NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (253)
Q Consensus       132 ~~~~~~~~~dcE~~g~~~---~~~~~ll~~v~iv~~~~-~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~  207 (253)
                      -...+++++|+||+|...   +.++++ +.+.+.+..- .-.+..+|+|..+++++..+++|||+++|++++++.+|..+
T Consensus        56 ~~~~~~vv~D~ETTGl~p~~~deIIeI-gaV~~~~~~i~~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~evl~~  134 (244)
T PRK07740         56 LTDLPFVVFDLETTGFSPQQGDEILSI-GAVKTKGGEVETDTFYSLVKPKRPIPEHILELTGITAEDVAFAPPLAEVLHR  134 (244)
T ss_pred             ccCCCEEEEEEeCCCCCCCCCCeEEEE-EEEEEECCEEEEEEEEEEeCcCCCCChhheeccCCCHHHHhCCCCHHHHHHH
Confidence            345679999999999764   456666 7777642211 11477899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      +.+++              ++.+|||||+.||+.||+-
T Consensus       135 f~~fi--------------~~~~lVahna~fD~~fL~~  158 (244)
T PRK07740        135 FYAFI--------------GAGVLVAHHAGHDKAFLRH  158 (244)
T ss_pred             HHHHh--------------CCCEEEEeCHHHHHHHHHH
Confidence            99999              7889999999999999964

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]

Probab=99.61  E-value=2.7e-16  Score=145.33  Aligned_cols=104  Identities=27%  Similarity=0.436  Sum_probs=93.0

Q ss_pred             cCCCceeeeecccccCC--CCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHH
Q 025404          132 CRGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (253)
Q Consensus       132 ~~~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~  207 (253)
                      -....++++|.||||.+  .+..+++ +.+.+  .+|++  .++.+++|..|++...++++|||+++|++++++++|..+
T Consensus       418 l~datyVVfDiETTGLs~~~d~iIE~-aAvKi--kng~iId~f~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~vL~k  494 (1444)
T COG2176         418 LDDATYVVFDIETTGLSPVYDEIIEI-AAVKI--KNGRIIDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEK  494 (1444)
T ss_pred             cccccEEEEEeecCCcCcccchhhhh-eeeee--eCCcchHHHHHhcCCCCcCchhhhhccccCHHHHcCCccHHHHHHH
Confidence            34566999999999976  6778888 88888  56666  789999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCCCCC
Q 025404          208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML  252 (253)
Q Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~~~  252 (253)
                      +.+++              .++||||||+.||++||+..+.++.+
T Consensus       495 f~~~~--------------~d~IlVAHNasFD~gFl~~~~~k~~~  525 (1444)
T COG2176         495 FREFI--------------GDSILVAHNASFDMGFLNTNYEKYGL  525 (1444)
T ss_pred             HHHHh--------------cCcEEEeccCccchhHHHHHHHHhCC
Confidence            99999              89999999999999999987776543

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.61  E-value=3.6e-16  Score=139.86  Aligned_cols=77  Identities=16%  Similarity=0.336  Sum_probs=59.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhccccccccccCCCceeeeecc---cccCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCE---MVGGGSNGTLD  154 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~~~~~~r~~~~~~~~~~dcE---~~g~~~~~~~~  154 (253)
                      |-+|-+...-++.|+.|.|+|+||+||+   |++.|+++.+|+.|+..|..+   ...+ +.+.|.   .|-..+...+.
T Consensus       608 CiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~---p~~R-~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  608 CIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAK---PPAR-VQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             eeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccC---cccc-ccccCCchhhhccccccccc
Confidence            9999999999999999999999999998   999999999999999777432   2222 567787   66554444444


Q ss_pred             ccceeee
Q 025404          155 LCARVCL  161 (253)
Q Consensus       155 ll~~v~i  161 (253)
                      +--+|.+
T Consensus       684 lpQhIri  690 (958)
T KOG1074|consen  684 LPQHIRI  690 (958)
T ss_pred             ccceEEe
Confidence            4334444

>PRK06195 DNA polymerase III subunit epsilon; Validated

Probab=99.61  E-value=1.2e-15  Score=128.43  Aligned_cols=94  Identities=18%  Similarity=0.346  Sum_probs=82.3

Q ss_pred             ceeeeecccccCCCCCcccccceeeeecCCCCe--EEeeeccCCC-CcccceeeeccCCHHhhcCCCCHHHHHHHHHHHH
Q 025404          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENV--IFHTYVQPQL-PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (253)
Q Consensus       136 ~~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~-~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~  212 (253)
                      .++++|+||+|...+.++++ +.+.+.  ++.+  .++.+|+|.. .+++..+++||||+++|+++|+|.+|+.+|.+++
T Consensus         2 ~~vviD~ETTg~~~d~IieI-gav~v~--~g~i~~~f~~lv~P~~~~~~~~~~~IhGIT~e~v~~ap~f~ev~~~~~~fl   78 (309)
T PRK06195          2 NFVAIDFETANEKRNSPCSI-GIVVVK--DGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVEDELEFDKIWEKIKHYF   78 (309)
T ss_pred             cEEEEEEeCCCCCCCceEEE-EEEEEE--CCEEEEEEEEEECCCCCCCChhheeccCcCHHHHhCCCCHHHHHHHHHHHh
Confidence            57899999999777888887 888874  4444  6889999985 5678889999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                                    .+.+|||||+.||+.||+..
T Consensus        79 --------------~~~~lVaHNa~FD~~fL~~~   98 (309)
T PRK06195         79 --------------NNNLVIAHNASFDISVLRKT   98 (309)
T ss_pred             --------------CCCEEEEECcHHHHHHHHHH
Confidence                          78899999999999999754

>PRK05601 DNA polymerase III subunit epsilon; Validated

Probab=99.61  E-value=2.5e-15  Score=126.07  Aligned_cols=98  Identities=15%  Similarity=0.245  Sum_probs=81.3

Q ss_pred             cCCCceeeeecccccCCC--CCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHH
Q 025404          132 CRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (253)
Q Consensus       132 ~~~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~  207 (253)
                      .....++++|+||+|...  +.++++ +.|.+.. +|.+  .|..+|+|..++..  ..+||||+++|+++|+|.+|+.+
T Consensus        43 ~~~~~fVvlDiETTGLdp~~drIIeI-gAV~i~~-~g~ive~f~tLVnP~~~~~p--~~LHGIT~e~La~AP~f~eVl~e  118 (377)
T PRK05601         43 IEAAPFVAVSIQTSGIHPSTSRLITI-DAVTLTA-DGEEVEHFHAVLNPGEDPGP--FHLHGLSAEEFAQGKRFSQILKP  118 (377)
T ss_pred             CCCCCEEEEEEECCCCCCCCCeEEEE-EEEEEEc-CCEEEEEEEEEECcCCCCCC--ccccCCCHHHHhcCCCHHHHHHH
Confidence            344679999999999863  456666 7777742 3444  89999999876554  47999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                      |.++|              .+.+|||||+.||++||+...
T Consensus       119 l~~fL--------------~g~vLVaHNA~FD~~FL~~e~  144 (377)
T PRK05601        119 LDRLI--------------DGRTLILHNAPRTWGFIVSEA  144 (377)
T ss_pred             HHHHh--------------CCCEEEEECcHHHHHHHHHHH
Confidence            99999              889999999999999997743

>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins

Probab=99.59  E-value=2.7e-15  Score=115.65  Aligned_cols=97  Identities=22%  Similarity=0.430  Sum_probs=80.4

Q ss_pred             eeeeecccccCCC---CCcccccceeeeecCCCC-eEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHH
Q 025404          137 AVAMDCEMVGGGS---NGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (253)
Q Consensus       137 ~~~~dcE~~g~~~---~~~~~ll~~v~iv~~~~~-~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~  212 (253)
                      ++++|+||+|...   +.++++ +.+.+.+.... ..+..+++|..++++...+++|||++++++++++.+|+.+|.+++
T Consensus         1 ~v~~D~ETTGl~~~~~~~iiei-g~v~v~~~~~~~~~~~~~v~P~~~i~~~~~~ihGIt~e~l~~~~~~~~v~~~l~~~l   79 (167)
T cd06131           1 QIVLDTETTGLDPREGHRIIEI-GCVELINRRLTGNTFHVYINPERDIPEEAFKVHGITDEFLADKPKFAEIADEFLDFI   79 (167)
T ss_pred             CEEEEeeCCCCCCCCCCeEEEE-EEEEEECCcEeccEEEEEECCCCCCCHHHHHHhCCCHHHHhcCCCHHHHHHHHHHHH
Confidence            4789999999764   356666 66666432111 167889999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCC
Q 025404          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP  248 (253)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~  248 (253)
                                    .+.++||||+.||+.||+-...
T Consensus        80 --------------~~~~lv~hn~~fD~~~l~~~~~  101 (167)
T cd06131          80 --------------RGAELVIHNASFDVGFLNAELS  101 (167)
T ss_pred             --------------CCCeEEEeChHHhHHHHHHHHH
Confidence                          6779999999999999976443

This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon

>PRK09145 DNA polymerase III subunit epsilon; Validated

Probab=99.59  E-value=3.5e-15  Score=118.46  Aligned_cols=96  Identities=23%  Similarity=0.363  Sum_probs=81.8

Q ss_pred             CCCceeeeecccccCCC--CCcccccceeeeecCCCCe----EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHH
Q 025404          133 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV----IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~----~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~  206 (253)
                      ....++++|+||+|...  +.++++ +.|.+.+  +.+    .++.+++|..+++++.++++|||++++++++++.+|+.
T Consensus        27 ~~~~~vviD~ETTGl~~~~d~IieI-gaV~~~~--~~~~~~~~f~~~i~p~~~i~~~~~~ihGIt~~~l~~~~~~~~vl~  103 (202)
T PRK09145         27 PPDEWVALDCETTGLDPRRAEIVSI-AAVKIRG--NRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEDGLSEEEALR  103 (202)
T ss_pred             CCCCEEEEEeECCCCCCCCCceEEE-EEEEEEC--CEEeecCceEEEECCCCCCCHhHhhhcCcCHHHHhcCCCHHHHHH
Confidence            34578999999999753  566666 6666632  222    47889999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      ++.+++              ++.+|||||+.||+.||+-
T Consensus       104 ~~~~~i--------------~~~~lv~hn~~fD~~fL~~  128 (202)
T PRK09145        104 QLLAFI--------------GNRPLVGYYLEFDVAMLNR  128 (202)
T ss_pred             HHHHHH--------------cCCeEEEeCHHHHHHHHHH
Confidence            999999              7889999999999999974

>PRK06807 DNA polymerase III subunit epsilon; Validated

Probab=99.58  E-value=5e-15  Score=124.22  Aligned_cols=97  Identities=25%  Similarity=0.394  Sum_probs=83.8

Q ss_pred             CCCceeeeecccccCCC--CCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHH
Q 025404          133 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  208 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l  208 (253)
                      .+..++++|+||+|...  +..+++ +.+.+.  ++.+  .++.+|+|..++++..++++|||+++|.++++|.+|+.++
T Consensus         6 ~~~~~Vv~DlETTGl~p~~~eIIEI-gaV~v~--~g~i~~~f~~lVkP~~~I~~~a~~ihGIT~e~l~~~~~~~evl~~f   82 (313)
T PRK06807          6 LPLDYVVIDFETTGFNPYNDKIIQV-AAVKYR--NHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLPLF   82 (313)
T ss_pred             CCCCEEEEEEECCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECcCCCCCHhhhccCCCCHHHHhCCCCHHHHHHHH
Confidence            34578999999999764  466676 777663  4555  5888999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                      .+++              ++.+|||||+.||+.||+-.
T Consensus        83 ~~fl--------------~~~~lVaHNa~FD~~fL~~~  106 (313)
T PRK06807         83 LAFL--------------HTNVIVAHNASFDMRFLKSN  106 (313)
T ss_pred             HHHH--------------cCCeEEEEcHHHHHHHHHHH
Confidence            9999              77899999999999999754

>PRK07983 exodeoxyribonuclease X; Provisional

Probab=99.56  E-value=6e-15  Score=117.79  Aligned_cols=88  Identities=19%  Similarity=0.298  Sum_probs=75.4

Q ss_pred             eeeeecccccCCCCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhc
Q 025404          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (253)
Q Consensus       137 ~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~  214 (253)
                      ++++|+||+|.. ..++++ +.+.+.  ++.+  .+..+++|..+|+...+++||||+++++++|++.+++..   ++  
T Consensus         2 ~~vlD~ETTGl~-~~IieI-g~v~v~--~~~i~~~~~~lv~P~~~i~~~~~~ihgIt~e~v~~ap~~~ev~~~---~~--   72 (219)
T PRK07983          2 LRVIDTETCGLQ-GGIVEI-ASVDVI--DGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPH---YY--   72 (219)
T ss_pred             eEEEEEECCCCC-CCCEEE-EEEEEE--CCEEEEEEEEEECcCCCCCHHHhhcCCCCHHHHcCCCCHHHHHHH---Hc--
Confidence            578999999975 347777 777775  4454  689999999999999999999999999999999999876   46  


Q ss_pred             CCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          215 GESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       215 ~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                                  ++.+|||||+.||.+||..
T Consensus        73 ------------~~~~lVaHNa~FD~~~L~~   91 (219)
T PRK07983         73 ------------GSEWYVAHNASFDRRVLPE   91 (219)
T ss_pred             ------------CCCEEEEeCcHhhHHHHhC
Confidence                        6679999999999999964

>PRK06722 exonuclease; Provisional

Probab=99.56  E-value=5.4e-15  Score=121.45  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=82.9

Q ss_pred             CceeeeecccccCC-----CCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHH
Q 025404          135 PKAVAMDCEMVGGG-----SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (253)
Q Consensus       135 ~~~~~~dcE~~g~~-----~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~  207 (253)
                      ..++++|.||++..     .+.++++ +.|.+.+..+.+  .|+.+|+|..+|+++++++||||+++|.++|+|.+|+.+
T Consensus         5 ~~~vViD~ETT~~p~~~~~~deIIEI-GAVkV~~g~i~Ivd~F~sLV~P~~~I~~~i~~LTGIT~emV~~AP~f~eVl~e   83 (281)
T PRK06722          5 THFIVFDIERNFRPYKSEDPSEIVDI-GAVKIEASTMKVIGEFSELVKPGARLTRHTTKLTGITKKDLIGVEKFPQIIEK   83 (281)
T ss_pred             CEEEEEEeeCCCCCCCCCCCCeEEEE-EEEEEECCceeEEeeEEEEECCCCcCCHhHhhhcCCCHHHHcCCCCHHHHHHH
Confidence            45899999998532     2567777 888885543455  599999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                      +.+++              ++.++|+||+.||++||+...
T Consensus        84 f~~fi--------------g~~~lvahna~FD~~FL~~~l  109 (281)
T PRK06722         84 FIQFI--------------GEDSIFVTWGKEDYRFLSHDC  109 (281)
T ss_pred             HHHHH--------------CCCcEEEEEeHHHHHHHHHHH
Confidence            99999              666778888899999998743

>PRK08517 DNA polymerase III subunit epsilon; Provisional

Probab=99.55  E-value=8.9e-15  Score=119.53  Aligned_cols=97  Identities=25%  Similarity=0.406  Sum_probs=83.2

Q ss_pred             ccCCCceeeeecccccCCC--CCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHH
Q 025404          131 TCRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (253)
Q Consensus       131 ~~~~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~  206 (253)
                      ......++++|+||+|...  +.++++ +.+.+.  ++.+  .+..+++|. +++.+.++++|||++++.+++++.+|+.
T Consensus        64 ~~~~~~~vv~DiETTG~~~~~~~IIEI-GAv~v~--~g~i~~~f~~~v~p~-~ip~~~~~itGIt~e~l~~ap~~~evl~  139 (257)
T PRK08517         64 PIKDQVFCFVDIETNGSKPKKHQIIEI-GAVKVK--NGEIIDRFESFVKAK-EVPEYITELTGITYEDLENAPSLKEVLE  139 (257)
T ss_pred             CCCCCCEEEEEEeCCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECCC-CCChhhhhhcCcCHHHHcCCCCHHHHHH
Confidence            3456678999999999764  356776 777774  4444  678899996 8999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      ++.+++              ++.++||||+.||+.||+.
T Consensus       140 ~f~~fl--------------~~~v~VaHNa~FD~~fL~~  164 (257)
T PRK08517        140 EFRLFL--------------GDSVFVAHNVNFDYNFISR  164 (257)
T ss_pred             HHHHHH--------------CCCeEEEECHHHHHHHHHH
Confidence            999999              7789999999999999975

>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins

Probab=99.54  E-value=5.8e-15  Score=114.67  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=77.5

Q ss_pred             eeeeecccccCC---CCCcccccceeeeecCC---CC--------e--EEeeeccCCCCcccceeeeccCCHHhhcCCCC
Q 025404          137 AVAMDCEMVGGG---SNGTLDLCARVCLVDED---EN--------V--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMP  200 (253)
Q Consensus       137 ~~~~dcE~~g~~---~~~~~~ll~~v~iv~~~---~~--------~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~  200 (253)
                      ++++|+||||..   .+.++++ +.+.+.+..   +.        +  .++.+++|..+|++..+++||||++++.++++
T Consensus         1 ~vv~D~ETTGl~~~~~d~Iiei-~av~v~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~a~~IhGIt~e~l~~~~~   79 (177)
T cd06136           1 FVFLDLETTGLPKHNRPEITEL-CLVAVHRDHLLNTSRDKPALPRVLDKLSLCFNPGRAISPGASEITGLSNDLLEHKAP   79 (177)
T ss_pred             CeEEeeecCCCCCCCCCceEEE-EEEEEecccccccccccccccceeeeeeEEeCCCCcCChhHHHHhCcCHHHHhcCCC
Confidence            478999999986   3566777 888774321   11        1  57899999999999999999999999999988


Q ss_pred             HHH-HHHHHHHHHhcCCCCCcccccCCCCeEEEeech-hhhhhhhcCCC
Q 025404          201 LKE-VKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRMNY  247 (253)
Q Consensus       201 ~~~-v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~~~~  247 (253)
                      +.+ +++.+.+++...          +.+.+|||||+ .||++||+-..
T Consensus        80 ~~~~~~~~l~~f~~~~----------~~~~~lVaHNa~~FD~~fL~~~~  118 (177)
T cd06136          80 FDSDTANLIKLFLRRQ----------PKPICLVAHNGNRFDFPILRSEL  118 (177)
T ss_pred             ccHHHHHHHHHHHHhc----------CCCCEEEEcCCcccCHHHHHHHH
Confidence            874 777777777210          12459999998 89999996544

Three prime repair exonuclease (TREX)1 and TREX2 are closely related DEDDh-type DnaQ-like 3'-5' exonucleases. They contain three conserved sequence motifs known as ExoI, II, and III, with a specific Hx(4)D conserved pattern at ExoIII. These motifs contain four conserved acidic residues that participate in coordination of divalent metal ions required for catalysis. Both proteins play a role in the metabolism and clearance of DNA. TREX1 is the major 3'-5' exonuclease activity detected in mammalian cells. Mutations in the human TREX1 gene can cause Aicardi-Goutieres syndrome (AGS), which is characterized by perturbed innate immunity and presents itself as a severe neurological disease. TREX1 degrades ssDNA generated by aberrant replication intermediates to prevent checkpoint activation and autoimmune disease. There are distinct structural differences between TREX1 and TRE

>PRK06063 DNA polymerase III subunit epsilon; Provisional

Probab=99.54  E-value=1.8e-14  Score=121.20  Aligned_cols=97  Identities=25%  Similarity=0.297  Sum_probs=79.9

Q ss_pred             CCCceeeeecccccCCCC--CcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHH
Q 025404          133 RGPKAVAMDCEMVGGGSN--GTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  208 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~~~--~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l  208 (253)
                      .+..++++|+||+|....  .++++ +.+.+. .+|.+  .+..+++|..+  ...+.+||||+++|.++|+|.+++.+|
T Consensus        13 ~~~~fvvlD~ETTGl~p~~d~IIeI-gav~v~-~~g~i~~~~~~lv~P~~~--~~~~~IhGIt~e~l~~ap~f~ev~~~l   88 (313)
T PRK06063         13 YPRGWAVVDVETSGFRPGQARIISL-AVLGLD-ADGNVEQSVVTLLNPGVD--PGPTHVHGLTAEMLEGQPQFADIAGEV   88 (313)
T ss_pred             CCCCEEEEEEECCCCCCCCCEEEEE-EEEEEE-CCceeeeEEEEEECcCCC--CCCeecCCCCHHHHhCCCCHHHHHHHH
Confidence            356789999999997643  56666 555553 34555  68899999753  467899999999999999999999999


Q ss_pred             HHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                      .+++              .+.+|||||+.||+.||+-..
T Consensus        89 ~~~l--------------~~~~lVaHNa~FD~~fL~~~~  113 (313)
T PRK06063         89 AELL--------------RGRTLVAHNVAFDYSFLAAEA  113 (313)
T ss_pred             HHHc--------------CCCEEEEeCHHHHHHHHHHHH
Confidence            9999              788999999999999998644

>PRK06309 DNA polymerase III subunit epsilon; Validated

Probab=99.52  E-value=2.9e-14  Score=115.41  Aligned_cols=96  Identities=22%  Similarity=0.383  Sum_probs=79.2

Q ss_pred             ceeeeecccccCCC--CCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHh
Q 025404          136 KAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (253)
Q Consensus       136 ~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~  213 (253)
                      .++++|+||||...  +.++++ +.   ++......+..+++|..+|+...+++||||+++|+++|+|.+|++++.+++.
T Consensus         3 ~~vv~D~ETTGl~~~~d~IIei-g~---v~~~~~~~f~~lv~P~~~I~~~a~~IhGIt~e~v~~~p~f~ev~~~~~~fi~   78 (232)
T PRK06309          3 ALIFYDTETTGTQIDKDRIIEI-AA---YNGVTSESFQTLVNPEIPIPAEASKIHGITTDEVADAPKFPEAYQKFIEFCG   78 (232)
T ss_pred             cEEEEEeeCCCCCCCCCEEEEE-EE---EcCccccEEEEEeCCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHHHHHHHc
Confidence            47899999999753  455555 43   4434445899999999999999999999999999999999999999999992


Q ss_pred             cCCCCCcccccCCCCeEEEeec-hhhhhhhhcCCCC
Q 025404          214 NGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMNYP  248 (253)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~~~~~  248 (253)
                                   .+.+||||| +.||+.||+-...
T Consensus        79 -------------~~~~lVaHN~~~FD~~~L~~e~~  101 (232)
T PRK06309         79 -------------TDNILVAHNNDAFDFPLLRKECR  101 (232)
T ss_pred             -------------CCCEEEEeCCHHHHHHHHHHHHH
Confidence                         346999999 5899999975443

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

Probab=99.52  E-value=2.3e-14  Score=134.60  Aligned_cols=95  Identities=21%  Similarity=0.386  Sum_probs=83.3

Q ss_pred             CCceeeeecccccCC-CCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHH
Q 025404          134 GPKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~-~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~  210 (253)
                      ...++++|+||+|.. .+.++++ +.+.+.  ++.+  .|..+|+|..+|+++++++||||++++.++|+|++|+.++.+
T Consensus         6 ~~~~vvvD~ETTGl~~~d~IIeI-gaV~v~--~g~i~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~~~~   82 (820)
T PRK07246          6 LRKYAVVDLEATGAGPNASIIQV-GIVIIE--GGEIIDSYTTDVNPHEPLDEHIKHLTGITDQQLAQAPDFSQVARHIYD   82 (820)
T ss_pred             CCCEEEEEEecCCcCCCCeEEEE-EEEEEE--CCEEEEEEEEEeCcCCCCCHhHhhcCCCCHHHHhcCCCHHHHHHHHHH
Confidence            456899999999975 3566666 777773  4555  688899999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          211 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      ++              ++.++||||+.||+.||+-
T Consensus        83 ~l--------------~~~~lVaHN~~FD~~fL~~  103 (820)
T PRK07246         83 LI--------------EDCIFVAHNVKFDANLLAE  103 (820)
T ss_pred             Hh--------------CCCEEEEECcHHHHHHHHH
Confidence            99              7899999999999999964

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.51  E-value=5.6e-15  Score=120.63  Aligned_cols=115  Identities=26%  Similarity=0.399  Sum_probs=102.6

Q ss_pred             CCCc-ccc--cccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-------CCCCCCCcCCcccccc
Q 025404           11 STAR-HKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-------TGPLSKAHCSGIFSDR   79 (253)
Q Consensus        11 ~~k~-~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-------~~~~~C~~C~~~f~~~   79 (253)
                      .+|| +.|  ..|-+.|..++.|.+|.+.  |++++. .|+.||..|+++..|-.|+       +.+|.|..|.|.|...
T Consensus       173 D~~pv~~C~W~~Ct~~~~~k~~LreH~r~--Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTe  250 (467)
T KOG3608|consen  173 DERPVTMCNWAMCTKHMGNKYRLREHIRT--HSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATE  250 (467)
T ss_pred             CCCceeeccchhhhhhhccHHHHHHHHHh--cCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHH
Confidence            3444 667  6799999999999999999  999999 9999999999999999997       6799999999999876


Q ss_pred             c--------------ccccccccCChHHHHHHHH-HccCCCCCC---ccccCccchhhhhhccccc
Q 025404           80 G--------------CNLCMNIFDSPSSLIKHKE-ACSLSAPVP---FEKTLSNAESQKKISGAID  127 (253)
Q Consensus        80 ~--------------C~~C~k~f~~~~~l~~H~~-~h~~~~~~~---C~~~f~~~~~l~~h~~~~~  127 (253)
                      +              |+.|.-+....++|..|+| .|+..|||+   |++.|.+.+.|.+|...|+
T Consensus       251 klL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS  316 (467)
T KOG3608|consen  251 KLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS  316 (467)
T ss_pred             HHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence            4              9999999999999999998 588889998   8888999999999986543

>PRK07942 DNA polymerase III subunit epsilon; Provisional

Probab=99.51  E-value=4.3e-14  Score=114.32  Aligned_cols=105  Identities=22%  Similarity=0.214  Sum_probs=80.4

Q ss_pred             CCceeeeecccccCCC--CCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcC-CCCHHHHHHHH
Q 025404          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKN-AMPLKEVKDKI  208 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~-~~~~~~v~~~l  208 (253)
                      ...++++|+||+|...  +.++++ +.+.+ +.+|.+  .+..+++|..+|++..+++||||++++.. ++++.++..++
T Consensus         5 ~~~~vv~D~ETTGl~p~~d~Iiei-g~v~v-~~~g~~~~~~~~lv~P~~~i~~~a~~IhGIt~e~l~~~g~~~~~vl~e~   82 (232)
T PRK07942          5 PGPLAAFDLETTGVDPETARIVTA-ALVVV-DADGEVVESREWLADPGVEIPEEASAVHGITTEYARAHGRPAAEVLAEI   82 (232)
T ss_pred             cCcEEEEEeccCCCCCCCCeeEEE-EEEEE-eCCCccccceEEEECCCCCCCHHHHHHhCCCHHHHHhhCCCHHHHHHHH
Confidence            4568999999999763  445555 55555 333554  57889999999999999999999999975 68888888888


Q ss_pred             HHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCC
Q 025404          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD  249 (253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~  249 (253)
                      ..+|....         ..+.+|||||+.||++||+....+
T Consensus        83 ~~~l~~~~---------~~~~~lVahNa~FD~~fL~~~~~r  114 (232)
T PRK07942         83 ADALREAW---------ARGVPVVVFNAPYDLTVLDRELRR  114 (232)
T ss_pred             HHHHHHHh---------hcCCEEEEeCcHhhHHHHHHHHHH
Confidence            88772111         046799999999999999765433

>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases

Probab=99.51  E-value=2.7e-14  Score=110.13  Aligned_cols=99  Identities=33%  Similarity=0.576  Sum_probs=80.9

Q ss_pred             eeeeecccccCCCC--CcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhc
Q 025404          137 AVAMDCEMVGGGSN--GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (253)
Q Consensus       137 ~~~~dcE~~g~~~~--~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~  214 (253)
                      ++++|+||+|....  ..+++ +.+.+-+..-...++.+|+|..+++++.++++|||++++.+++++.+|+.++.+++  
T Consensus         2 ~v~~D~Ettg~~~~~~~Iiei-g~v~~~~~~~~~~f~~~v~p~~~i~~~~~~~~Git~~~l~~~~~~~~~~~~~~~~l--   78 (169)
T smart00479        2 LVVIDCETTGLDPGKDEIIEI-AAVDVDGGRIIVVFDTYVKPDRPITDYATEIHGITPEMLDDAPTFEEVLEELLEFL--   78 (169)
T ss_pred             EEEEEeeCCCCCCCCCeEEEE-EEEEEECCEeEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHHHHh--
Confidence            68999999997643  45555 55555322212379999999999999999999999999999999999999999999  


Q ss_pred             CCCCCcccccCCCCeEEEeech-hhhhhhhcCCCCCC
Q 025404          215 GESTGRLMLDDGKARLLVGHGL-EHDLDSLRMNYPDH  250 (253)
Q Consensus       215 ~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~~~~~~~  250 (253)
                                  .+.++||||. .||+.+|+....+.
T Consensus        79 ------------~~~~~v~~n~~~fD~~~L~~~~~~~  103 (169)
T smart00479       79 ------------KGKILVAGNALNFDLRFLKLEHPRL  103 (169)
T ss_pred             ------------cCCEEEEeCCHHHhHHHHHHHHHHh
Confidence                        6678888887 99999999865543

>PRK07748 sporulation inhibitor KapD; Provisional

Probab=99.49  E-value=3.9e-14  Score=112.80  Aligned_cols=96  Identities=22%  Similarity=0.323  Sum_probs=77.7

Q ss_pred             CceeeeecccccCC--------CCCcccccceeeeecCCCCe--EEeeeccCCC--CcccceeeeccCCHHhhcCCCCHH
Q 025404          135 PKAVAMDCEMVGGG--------SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLK  202 (253)
Q Consensus       135 ~~~~~~dcE~~g~~--------~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~--~i~~~~~~~~Git~~~l~~~~~~~  202 (253)
                      ..++++|+||+|..        .+.++++ +.|.+.  ++.+  .|+.+|+|..  +++++.+++||||+++|.++|+|+
T Consensus         4 ~~~vvlD~EtTg~~~~~~~~~~~~eIIeI-GaV~v~--~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~l~~ap~~~   80 (207)
T PRK07748          4 QQFLFLDFEFTMPQHKKKPKGFFPEIIEV-GLVSVV--GCEVEDTFSSYVKPKTFPSLTERCKSFLGITQEDVDKGISFE   80 (207)
T ss_pred             ceEEEEEeecCCcCCCCCCCCCCCceEEE-eEEEEe--cCcChhhhcceECCCccCccChhhhhhcCcCHHHHccCCCHH
Confidence            45899999999843        2456777 777774  3344  7999999986  689999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCC-eEEEeechhhhhhhhcCCC
Q 025404          203 EVKDKILEILNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       203 ~v~~~l~~~~~~~~~~~~~~~~~~~~-~~lv~h~~~~D~~~l~~~~  247 (253)
                      +|+++|.+++              ++ .++|.|+..||++||+...
T Consensus        81 evl~~f~~~~--------------~~~~~~iv~~~~fD~~fL~~~~  112 (207)
T PRK07748         81 ELVEKLAEYD--------------KRCKPTIVTWGNMDMKVLKHNC  112 (207)
T ss_pred             HHHHHHHHHh--------------CcCCeEEEEECHHHHHHHHHHH
Confidence            9999999999              55 3444456799999997543

>PRK05168 ribonuclease T; Provisional

Probab=99.48  E-value=8.4e-14  Score=111.04  Aligned_cols=108  Identities=24%  Similarity=0.358  Sum_probs=80.6

Q ss_pred             CCCceeeeecccccCC--CCCcccccceeeeec-CCCCe----EEeeeccC--CCCcccceeeeccCCHHh-hcCCCCHH
Q 025404          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVD-EDENV----IFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLK  202 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~-~~~~~----~~~~~v~P--~~~i~~~~~~~~Git~~~-l~~~~~~~  202 (253)
                      ....++++|+||+|..  .+.++++ +.+.+.. .+|.+    .|+.+++|  ..+|+...++++|||+++ +.+++++.
T Consensus        15 ~~~~~vv~D~ETTGl~~~~d~IieI-gaV~v~~d~~g~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~e~~~~~~~~~~   93 (211)
T PRK05168         15 RGFLPVVIDVETAGFNAKTDALLEI-AAVTLKMDEQGWLYPDETLHFHVEPFEGANLEPEALAFNGIDPDNPLRGAVSEK   93 (211)
T ss_pred             cCCceEEEEeeCCCCCCCCCEEEEE-eEEEEEecCCCcEeccceEEEEECCCCCCCCCHHHHhhcCCCchhhhhcCCChH
Confidence            3445799999999976  3566777 8887753 24542    68899999  468999999999999986 78889988


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       203 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                      +++.++.+++.....     .....+.+|||||+.||+.||+..
T Consensus        94 ~~l~~~~~~l~~~~~-----~~~~~~~~lVaHNa~FD~~fL~~~  132 (211)
T PRK05168         94 EALHEIFKMVRKGIK-----ASGCNRAILVAHNAHFDLSFLMAA  132 (211)
T ss_pred             HHHHHHHHHHHHHHH-----hcccCCceEEEeccHHhHHHHHHH
Confidence            888888887721000     000026799999999999999754

>PRK07883 hypothetical protein; Validated

Probab=99.47  E-value=6.1e-14  Score=126.48  Aligned_cols=98  Identities=29%  Similarity=0.435  Sum_probs=84.6

Q ss_pred             cCCCceeeeecccccCCC--CCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHH
Q 025404          132 CRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (253)
Q Consensus       132 ~~~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~  207 (253)
                      .....++++|+||+|...  +.++++ +.+.+.  ++.+  .+..+|+|..+++++.+++||||++++.+++++.+++.+
T Consensus        12 ~~~~~~Vv~D~ETTGl~p~~~~IIEI-gaV~v~--~g~iv~~f~~lV~P~~~i~~~~~~itGIt~e~l~~ap~~~evl~~   88 (557)
T PRK07883         12 LRDVTFVVVDLETTGGSPAGDAITEI-GAVKVR--GGEVLGEFATLVNPGRPIPPFITVLTGITTAMVAGAPPIEEVLPA   88 (557)
T ss_pred             CcCCCEEEEEEecCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHH
Confidence            344678999999999764  466676 777773  4444  588999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                      +.+++              ++.+|||||+.||+.||+..
T Consensus        89 f~~fl--------------~~~~lVaHNa~FD~~fL~~~  113 (557)
T PRK07883         89 FLEFA--------------RGAVLVAHNAPFDIGFLRAA  113 (557)
T ss_pred             HHHHh--------------cCCEEEEeCcHHHHHHHHHH
Confidence            99999              77899999999999999753

>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]

Probab=99.47  E-value=8.5e-14  Score=113.77  Aligned_cols=98  Identities=29%  Similarity=0.466  Sum_probs=85.0

Q ss_pred             CceeeeecccccCC--CCCcccccceeeeecCCCC-eEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHH
Q 025404          135 PKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (253)
Q Consensus       135 ~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~-~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~  211 (253)
                      ..++++|+|++|..  .+.++++ +.|.+.+..-. ..++.+++|..+|++...+++|||.+++.++|.|.++.+++.++
T Consensus        13 ~~~vv~D~ETtg~~~~~~~iieI-gav~~~~~~i~~~~~~~~v~P~~~i~~~~~~i~git~e~l~~~p~~~~v~~~~~~~   91 (243)
T COG0847          13 TRFVVIDLETTGLNPKKDRIIEI-GAVTLEDGRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDF   91 (243)
T ss_pred             CcEEEEecccCCCCCCCCceEEE-EeEEEECCeeecceeEEEECCCCCCChhhhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence            46799999999975  6777787 88888654222 24889999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCC-eEEEeechhhhhhhhcCCC
Q 025404          212 LNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       212 ~~~~~~~~~~~~~~~~~-~~lv~h~~~~D~~~l~~~~  247 (253)
                      +              .+ .++||||+.||+.||+...
T Consensus        92 i--------------~~~~~~Vahna~fD~~fl~~~~  114 (243)
T COG0847          92 I--------------GGLRLLVAHNAAFDVGFLRVES  114 (243)
T ss_pred             H--------------CCCCeEEEEchhhcHHHHHHHH
Confidence            9              66 8999999999999997543

>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T

Probab=99.46  E-value=1.3e-13  Score=108.24  Aligned_cols=105  Identities=24%  Similarity=0.309  Sum_probs=74.4

Q ss_pred             ceeeeecccccCC--CCCcccccceeeeecC-CCCe----EEeeeccC--CCCcccceeeeccCCHHh-hcCCCCHHHHH
Q 025404          136 KAVAMDCEMVGGG--SNGTLDLCARVCLVDE-DENV----IFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLKEVK  205 (253)
Q Consensus       136 ~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~-~~~~----~~~~~v~P--~~~i~~~~~~~~Git~~~-l~~~~~~~~v~  205 (253)
                      ..+++|+||+|..  .+.++++ +.+.+.+. +|.+    .++.+++|  ..+|+....+++|||+++ +..++...++.
T Consensus         6 ~~vv~D~ETTGl~~~~d~Iiei-gav~v~~~~~~~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~~~~~~~~~~~~~~~   84 (189)
T cd06134           6 LPVVVDVETGGFNPQTDALLEI-AAVTLEMDEQGNLYPDETFHFHILPFEGANLDPAALEFNGIDPFHPFRFAVDEKEAL   84 (189)
T ss_pred             eeEEEEecCCCCCCCCCeEEEE-EEEEEEECCCCceeccceEEEEEcCCCCCCCCHHHHhhcCCCchhhhccccchHHHH
Confidence            4689999999965  4567777 88888642 4433    78999999  568999999999999987 55666656655


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       206 ~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                      .++++++.+-.  +   .....+.+|||||+.||+.||+..
T Consensus        85 ~~~~~~l~~~~--~---~~~~~~~~lVaHna~FD~~fL~~~  120 (189)
T cd06134          85 KEIFKPIRKAL--K---AQGCTRAILVGHNAHFDLGFLNAA  120 (189)
T ss_pred             HHHHHHHHHHH--h---hcccCCCeEEEecchhhHHHHHHH
Confidence            55555541000  0   000025799999999999999854

RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.

>TIGR01298 RNaseT ribonuclease T

Probab=99.46  E-value=1.5e-13  Score=108.78  Aligned_cols=106  Identities=24%  Similarity=0.337  Sum_probs=78.2

Q ss_pred             CceeeeecccccCCC--CCcccccceeeee-cCCCCe----EEeeeccC--CCCcccceeeeccCCHH-hhcCCCCHHHH
Q 025404          135 PKAVAMDCEMVGGGS--NGTLDLCARVCLV-DEDENV----IFHTYVQP--QLPVTNYRYEVTGLTEE-DIKNAMPLKEV  204 (253)
Q Consensus       135 ~~~~~~dcE~~g~~~--~~~~~ll~~v~iv-~~~~~~----~~~~~v~P--~~~i~~~~~~~~Git~~-~l~~~~~~~~v  204 (253)
                      ..++++|+||+|...  +.++++ +.+.+. +.++.+    .+..+++|  ..+|+....+++|||++ ++.+++++.++
T Consensus         8 ~~~vv~D~ETTGl~~~~d~IieI-gav~v~~~~~g~i~~~~~f~~~v~p~p~~~i~~~a~~ihGIt~~~~~~~~~~~~~~   86 (200)
T TIGR01298         8 YLPVVVDVETGGFNAKTDALLEI-AAITLKMDEQGWLFPDTTLHFHVEPFEGANIQPEALEFTGIDLDHPLRGAVSEYEA   86 (200)
T ss_pred             CeeEEEEeeCCCCCCCCCeEEEE-EEEEEEEcCCCcEeecceeEEEEcCCCCCCCCHHHHHccCCChhhhhhcCcchHHH
Confidence            457899999999763  456777 778775 334554    37889997  47899999999999976 58888988888


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       205 ~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                      +.+++.++....     ...-.++.+|||||+.||++||+..
T Consensus        87 ~~~~~~~l~~~~-----~~~~~~~~~lVaHNa~FD~~fL~~~  123 (200)
T TIGR01298        87 LHEIFKVVRKAM-----KASGCQRAILVGHNANFDLGFLNAA  123 (200)
T ss_pred             HHHHHHHHHHHH-----HhcccCCCEEEEECchhhHHHHHHH
Confidence            888877761000     0000035699999999999999753

in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases.

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

Probab=99.45  E-value=1.5e-13  Score=131.06  Aligned_cols=94  Identities=29%  Similarity=0.536  Sum_probs=83.2

Q ss_pred             CceeeeecccccCCC---CCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHH
Q 025404          135 PKAVAMDCEMVGGGS---NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (253)
Q Consensus       135 ~~~~~~dcE~~g~~~---~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~  209 (253)
                      .+++++|+||+|...   +.++++ +.+.+.  ++++  .|..+|+|..+|++++.++||||+++|+++|+|.+|+.+|.
T Consensus         3 ~~~vvvD~ETTG~~p~~~d~IIei-gav~v~--~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~~~l~~ap~f~ev~~~l~   79 (928)
T PRK08074          3 KRFVVVDLETTGNSPKKGDKIIQI-AAVVVE--DGEILERFSSFVNPERPIPPFITELTGISEEMVKQAPLFEDVAPEIV   79 (928)
T ss_pred             CCEEEEEEeCCCCCCCCCCcEEEE-EEEEEE--CCEEEEEEEEEECcCCCCCHHHhhcCCCCHHHHhcCCCHHHHHHHHH
Confidence            458999999999753   456777 777773  4555  68999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      +++              ++.++||||+.||+.||+-
T Consensus        80 ~~l--------------~~~~~VaHN~~FD~~fL~~  101 (928)
T PRK08074         80 ELL--------------EGAYFVAHNVHFDLNFLNE  101 (928)
T ss_pred             HHh--------------CCCeEEEEChHHHHHHHHH
Confidence            999              7899999999999999975

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.43  E-value=3.7e-14  Score=125.33  Aligned_cols=107  Identities=23%  Similarity=0.351  Sum_probs=89.2

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCCcc--ccccccccccCHHHHhhhhCCCCCC---------CcCCccccccccc
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLSKSFESLREHLTGPLSK---------AHCSGIFSDRGCN   82 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~--~C~~C~~~f~~~~~l~~H~~~~~~C---------~~C~~~f~~~~C~   82 (253)
                      ...|+.|.+.+.+...|+.|++.. |....+  .|..|.++|.+...|.+|+.-..+|         ..|.+.|+   |.
T Consensus       210 lltcpycdrgykrltslkeHikyr-hekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFK---Ct  285 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYR-HEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFK---CT  285 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHH-HhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccc---cc
Confidence            368999999999999999999874 543333  9999999999999999999222222         34555554   99


Q ss_pred             ccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhcc
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISG  124 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~  124 (253)
                      +|||+|+.+..|+.|+|+|+|||||.   |.++|+...+...|+.
T Consensus       286 ECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  286 ECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            99999999999999999999999997   8899999888888873

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type

Probab=99.43  E-value=1.4e-13  Score=132.38  Aligned_cols=99  Identities=25%  Similarity=0.472  Sum_probs=86.6

Q ss_pred             CCCceeeeecccccCC--CCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHH
Q 025404          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  208 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l  208 (253)
                      ....++++|+||+|..  .+.++++ +.+.+.  ++.+  .++.+|+|..+|++..++++|||+++|++++++.+|++++
T Consensus       188 ~~~~~VVfDiETTGL~~~~d~IIEI-GAVkv~--~g~iid~f~~~V~P~~~I~~~~~~ltGIT~e~L~~ap~~~evl~~f  264 (1213)
T TIGR01405       188 DDATYVVFDIETTGLSPQYDEIIEF-GAVKVK--NGRIIDKFQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKF  264 (1213)
T ss_pred             cCCcEEEEEeEecCCCCCCCeEEEE-EEEEEE--CCeEEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHH
Confidence            3557999999999975  4567777 888874  3455  5899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCC
Q 025404          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP  248 (253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~  248 (253)
                      .+++              ++++|||||+.||+.||+-...
T Consensus       265 ~~fl--------------~~~iLVaHNa~FD~~fL~~~~~  290 (1213)
T TIGR01405       265 KEFF--------------KDSILVAHNASFDIGFLNTNFE  290 (1213)
T ss_pred             HHHh--------------CCCeEEEEChHHHHHHHHHHHH
Confidence            9999              7889999999999999986443

The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative

Probab=99.42  E-value=2.8e-13  Score=128.51  Aligned_cols=92  Identities=26%  Similarity=0.482  Sum_probs=82.0

Q ss_pred             eeeeecccccCC--CCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHH
Q 025404          137 AVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (253)
Q Consensus       137 ~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~  212 (253)
                      ++++|+||+|..  .+.++++ +.+.+  .+|++  .++.+|+|..+|+++.+++||||++++.++|+|.+|..+|.+++
T Consensus         2 ~vvvD~ETTG~~~~~~~IIei-g~v~v--~~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~l~~~l   78 (850)
T TIGR01407         2 YAVVDLETTGTQLSFDKIIQI-GIVVV--EDGEIVDTFHTDVNPNEPIPPFIQELTGISDNMLQQAPYFSQVAQEIYDLL   78 (850)
T ss_pred             EEEEEEECCCCCCCCCeEEEE-EEEEE--ECCEEEEEEEEEeCCCCCCChhhhhhcCcCHHHHhCCCCHHHHHHHHHHHh
Confidence            689999999976  4566777 77777  34555  58999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                                    ++.++||||+.||+.||+-
T Consensus        79 --------------~~~~~VahN~~fD~~fL~~   97 (850)
T TIGR01407        79 --------------EDGIFVAHNVHFDLNFLAK   97 (850)
T ss_pred             --------------CCCEEEEeCcHHHHHHHHH
Confidence                          7889999999999999975

This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.

>PRK05359 oligoribonuclease; Provisional

Probab=99.40  E-value=5e-13  Score=103.90  Aligned_cols=104  Identities=18%  Similarity=0.227  Sum_probs=78.7

Q ss_pred             CceeeeecccccCC--CCCcccccceeeeecCCCCe---EEeeeccCCCC----cccceeeec---cCCHHhhcCCCCHH
Q 025404          135 PKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV---IFHTYVQPQLP----VTNYRYEVT---GLTEEDIKNAMPLK  202 (253)
Q Consensus       135 ~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~---~~~~~v~P~~~----i~~~~~~~~---Git~~~l~~~~~~~  202 (253)
                      .+++++|+||||..  .+.++++ +.+.+ +.+..+   .+..+++|...    ++.+...++   |||++++++++++.
T Consensus         3 ~~~vvlD~ETTGLdp~~d~IieI-gaV~~-~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~ih~~tGIt~~~l~~~~~~~   80 (181)
T PRK05359          3 DNLIWIDLEMTGLDPERDRIIEI-ATIVT-DADLNILAEGPVIAIHQSDEALAAMDEWNTRTHTRSGLIDRVRASTVSEA   80 (181)
T ss_pred             CcEEEEEeecCCCCCCCCeEEEE-EEEEE-cCCceEcccceEEEECCCHHHhhccChHHHHhcccccCcHHHHhcCCCHH
Confidence            46899999999976  4566777 77755 333333   47788988754    456677776   89999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCC
Q 025404          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP  248 (253)
Q Consensus       203 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~  248 (253)
                      +|+.++.+++..    |.+    ..+.+|||||+.||+.||+...+
T Consensus        81 e~~~~~l~fl~~----~~~----~~~~~l~g~~v~FD~~FL~~~~~  118 (181)
T PRK05359         81 EAEAQTLEFLKQ----WVP----AGKSPLCGNSIGQDRRFLARYMP  118 (181)
T ss_pred             HHHHHHHHHHHH----hcC----CCCCceeecchhhCHHHHHHHHH
Confidence            999999999921    100    12468999999999999987654

>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family

Probab=99.38  E-value=1e-12  Score=99.78  Aligned_cols=95  Identities=28%  Similarity=0.436  Sum_probs=79.5

Q ss_pred             eeeecccccCC--CCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHh
Q 025404          138 VAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (253)
Q Consensus       138 ~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~  213 (253)
                      +++|+||+|..  ....+++ +.+.+- .++++  .++.+++|...+.++..+++||+++++.+++++.+++.++.+++ 
T Consensus         1 v~~D~Ettg~~~~~~~iiei-~~v~~~-~~~~~~~~~~~~i~p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~l-   77 (159)
T cd06127           1 VVFDTETTGLDPKKDRIIEI-GAVKVD-GGIEIVERFETLVNPGRPIPPEATAIHGITDEMLADAPPFEEVLPEFLEFL-   77 (159)
T ss_pred             CeEEeeCCCcCCCCCeEEEE-EEEEEE-CCcChhhhhheeeCcCCcCCHhheeccCCCHHHHhcCCCHHHHHHHHHHHH-
Confidence            46899999976  4556666 555553 22233  78999999999999999999999999999999999999999999 


Q ss_pred             cCCCCCcccccCCCCeEEEeechhhhhhhhcCCCC
Q 025404          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP  248 (253)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~  248 (253)
                                   .+.++||||+.||+.||+...+
T Consensus        78 -------------~~~~~v~~n~~fD~~~l~~~~~   99 (159)
T cd06127          78 -------------GGRVLVAHNASFDLRFLNRELR   99 (159)
T ss_pred             -------------CCCEEEEeCcHhhHHHHHHHHH
Confidence                         5689999999999999986544

DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.

>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III

Probab=99.38  E-value=7.8e-14  Score=106.40  Aligned_cols=94  Identities=30%  Similarity=0.542  Sum_probs=81.5

Q ss_pred             eeeecccccCCC--CCcccccceeeeecCC--CCeEEeeeccCCCC--cccceeeeccCCHHhhcCCCCHHHHHHHHHHH
Q 025404          138 VAMDCEMVGGGS--NGTLDLCARVCLVDED--ENVIFHTYVQPQLP--VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (253)
Q Consensus       138 ~~~dcE~~g~~~--~~~~~ll~~v~iv~~~--~~~~~~~~v~P~~~--i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~  211 (253)
                      +++|+||+|...  ...+++ +.+.+.+..  ....++.+++|..+  ++++.++++|||.+++.+++++.+++.++.++
T Consensus         1 v~~D~Ettg~~~~~~~iiei-g~v~~~~~~~~~~~~~~~~i~p~~~~~i~~~~~~~~gIt~~~l~~~~~~~~~~~~~~~~   79 (164)
T PF00929_consen    1 VVFDTETTGLDPRQDEIIEI-GAVKVDDDENEEVESFNSLIRPEEPPKISPWATKVHGITQEDLEDAPSFEEALDEFEEF   79 (164)
T ss_dssp             EEEEEEESSSTTTTCTEEEE-EEEEEETTTTEEEEEEEEEBEHSSHCSSEHHHHHHHHHCHHHHHCHCEHHHHHHHHHHH
T ss_pred             cEEEeEcCCCCCCCCeEEEE-EEEEeeCCccccceeeeecccccccccCCHHHeeecCCcccccccCCcHHHHHHhhhhh
Confidence            579999999775  677777 888887655  33489999999988  99999999999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      +.             .+.++||||+.||..+|+-
T Consensus        80 ~~-------------~~~~~v~~n~~fd~~~l~~  100 (164)
T PF00929_consen   80 LK-------------KNDILVGHNASFDIGFLRR  100 (164)
T ss_dssp             HH-------------HHTEEEETTCCHEEESSHH
T ss_pred             hh-------------cccccccccccchhhHHHH
Confidence            93             3679999999999988753

Ribonuclease T is responsible for the end-turnover of tRNA,and removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria, and also exhibits 3' to 5' exonuclease activity.; PDB: 3CM6_A 3CM5_A 3CG7_A 1ZBU_B 1ZBH_A 1W0H_A 3NGY_C 2IS3_B 3NH1_C 3NH2_F ....

>PRK09182 DNA polymerase III subunit epsilon; Validated

Probab=99.37  E-value=1.4e-12  Score=108.55  Aligned_cols=98  Identities=19%  Similarity=0.242  Sum_probs=76.9

Q ss_pred             CCCceeeeecccccCCC--CCcccccceeeeec-CCCCe-----EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHH
Q 025404          133 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVD-EDENV-----IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEV  204 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~-~~~~~-----~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v  204 (253)
                      ....++++|+||||...  +.++++ +.|.+.. .+|.+     .++.+++|..+|+...+++||||++++.+++...  
T Consensus        35 ~~~~~vvlD~ETTGLd~~~d~IIEI-g~V~v~~~~~g~i~~v~~~~~~lv~P~~~I~~~~t~IhGIt~e~v~~~~~~~--  111 (294)
T PRK09182         35 FVRLGVILDTETTGLDPRKDEIIEI-GMVAFEYDDDGRIGDVLDTFGGLQQPSRPIPPEITRLTGITDEMVAGQTIDP--  111 (294)
T ss_pred             CCCeEEEEEeeCCCCCCCCCeEEEE-EEEEEEecCCCceeeeeeEEEEEeCCCCCCCHHHHHhcCCCHHHHhcCCCcH--
Confidence            34567999999999764  567777 7777742 24432     5788999999999999999999999999987643  


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       205 ~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                       ..|.+++.             .+.+|||||+.||+.||+...
T Consensus       112 -~~l~~fl~-------------~~~vlVAHNA~FD~~fL~~~~  140 (294)
T PRK09182        112 -AAVDALIA-------------PADLIIAHNAGFDRPFLERFS  140 (294)
T ss_pred             -HHHHHHhc-------------CCCEEEEeCHHHHHHHHHHHH
Confidence             35677782             345999999999999997643

>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins

Probab=99.35  E-value=1.4e-12  Score=101.89  Aligned_cols=95  Identities=23%  Similarity=0.283  Sum_probs=74.4

Q ss_pred             eeeecccccCC--CCCcccccceeeeecCCCCe--EEeeeccCCC--CcccceeeeccCCHHhhcC-CCCHHHHHHHHHH
Q 025404          138 VAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKN-AMPLKEVKDKILE  210 (253)
Q Consensus       138 ~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~--~i~~~~~~~~Git~~~l~~-~~~~~~v~~~l~~  210 (253)
                      .++|+||+|..  .+.++++ +.+.+ +.++.+  .++.+++|..  +++.....++|||+++|.+ ++++.+++.++..
T Consensus         1 ~~~D~ETTGl~~~~d~Iiei-g~v~v-~~~~~~~~~~~~~v~p~~~~~~~~~a~~ihGIt~e~l~~~~~~~~~~l~~~~~   78 (183)
T cd06138           1 LFYDYETFGLNPSFDQILQF-AAIRT-DENFNEIEPFNIFCRLPPDVLPSPEALIVTGITPQQLLKEGLSEYEFIAKIHR   78 (183)
T ss_pred             CEEEeecCCCCCCCCceEEE-EEEEE-CCCCCCccceeEEEeCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHHHHHHH
Confidence            36899999975  4466666 66655 223333  5788998874  5677888999999999999 8999999999999


Q ss_pred             HHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhcCC
Q 025404          211 ILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMN  246 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~~~  246 (253)
                      ++..            .+.+||||| +.||+.||+..
T Consensus        79 ~~~~------------~~~~lVahn~~~FD~~fL~~~  103 (183)
T cd06138          79 LFNT------------PGTCIVGYNNIRFDDEFLRFA  103 (183)
T ss_pred             HHcc------------CCCcEEeeCchhhHHHHHHHH
Confidence            9921            356999997 89999999753

This subfamily is composed of the N-terminal domain of Escherichia coli exonuclease I (ExoI) and similar proteins. ExoI is a monomeric enzyme that hydrolyzes single stranded DNA in the 3' to 5' direction. It plays a role in DNA recombination and repair. It primarily functions in repairing frameshift mutations. The N-terminal domain of ExoI is a DEDDh-type DnaQ-like 3'-5 exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The ExoI structure is unique among DnaQ family enzymes in that there is a large distance between the two metal ions required for catalysis and the catalytic histidine is oriented away from the active site.

>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins

Probab=99.35  E-value=7.5e-13  Score=102.42  Aligned_cols=101  Identities=20%  Similarity=0.215  Sum_probs=75.8

Q ss_pred             eeeecccccCC--CCCcccccceeeeecCCCCe--EEeeeccCCCCcc----cceeee---ccCCHHhhcCCCCHHHHHH
Q 025404          138 VAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVT----NYRYEV---TGLTEEDIKNAMPLKEVKD  206 (253)
Q Consensus       138 ~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~----~~~~~~---~Git~~~l~~~~~~~~v~~  206 (253)
                      +++|+||+|..  .+.++++ +.+.+.+..+.+  .|+.+++|..+++    .+..++   +||+++++++++++.+++.
T Consensus         2 v~iD~ETTGl~p~~d~IieI-gaV~~~~~~~~i~~~f~~~i~p~~~~~~~~~~~~~~ih~~tgIt~~~l~~~~~~~~vl~   80 (173)
T cd06135           2 VWIDLEMTGLDPEKDRILEI-ACIITDGDLNIIAEGPELVIHQPDEVLDGMDEWCTEMHTKSGLTERVRASTVTLAQAEA   80 (173)
T ss_pred             EEEEEecCCCCCCCCeeEEE-EEEEEeCCCceecCceeEEECCCHHHhhhccHHHHHcccccccHHHHHhCCCCHHHHHH
Confidence            68999999977  3566777 777663322333  6899999987654    344445   6999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                      ++.+++.+..        .....+|||||+.||+.||+-..
T Consensus        81 ~~~~f~~~~~--------~~~~~~lvgh~~~FD~~fL~~~~  113 (173)
T cd06135          81 ELLEFIKKYV--------PKGKSPLAGNSVHQDRRFLDKYM  113 (173)
T ss_pred             HHHHHHHHhc--------CCCCCceeecchhhCHHHHHHHH
Confidence            9999993100        00235999999999999998654

Oligoribonuclease (Orn) is a DEDDh-type DnaQ-like 3'-5' exoribonuclease that is responsible for degrading small oligoribonucleotides to mononucleotides. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Orn is essential for Escherichia coli survival. The human homolog, also called Sfn (small fragment nuclease), is able to hydrolyze short single-stranded RNA and DNA oligomers. It plays a role in cellular nucleotide recycling.

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.31  E-value=7.8e-13  Score=100.46  Aligned_cols=67  Identities=25%  Similarity=0.439  Sum_probs=57.6

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSD   78 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~   78 (253)
                      ++.-.|.|..|+|.|.....|.+|++.  |+..+- .|..||+.|...-.|++|+     .+||.|..|+|+|..
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kc--h~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq  185 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKC--HSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ  185 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhh--ccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence            345679999999999999999999999  998888 9999999999999999998     578987665555543

>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

Probab=99.27  E-value=8.9e-12  Score=96.73  Aligned_cols=94  Identities=26%  Similarity=0.381  Sum_probs=74.8

Q ss_pred             eeeeecccccCCC-------CCcccccceeeeecCCCCe--EEeeeccCCC--CcccceeeeccCCHHhhcCCCCHHHHH
Q 025404          137 AVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (253)
Q Consensus       137 ~~~~dcE~~g~~~-------~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~--~i~~~~~~~~Git~~~l~~~~~~~~v~  205 (253)
                      ++++|+||+|...       +.++++ +.+.+....+.+  .++.+|+|..  +++++..+++|||++++.+++++++|+
T Consensus         1 ~vv~D~Ettg~~~~~~~~~~~~IieI-gav~v~~~~~~~~~~f~~~i~P~~~~~i~~~~~~i~gIt~e~l~~~~~~~~vl   79 (176)
T cd06133           1 YLVIDFEATCWEGNSKPDYPNEIIEI-GAVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVL   79 (176)
T ss_pred             CEEEEeeccccCCCCCCCCCcceEEE-EEEEEEcCCCeEEeeeeeeECCCcCCchhHHHHHhcCcCHHHHhcCCCHHHHH
Confidence            4789999999764       456666 666664333323  7899999998  899999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCe--EEEeechhhhhhhhcC
Q 025404          206 DKILEILNNGESTGRLMLDDGKAR--LLVGHGLEHDLDSLRM  245 (253)
Q Consensus       206 ~~l~~~~~~~~~~~~~~~~~~~~~--~lv~h~~~~D~~~l~~  245 (253)
                      .++.+++              ++.  .+++|+..||+.+|.-
T Consensus        80 ~~~~~~l--------------~~~~~~~~v~~~~~d~~~l~~  107 (176)
T cd06133          80 KEFLEWL--------------GKNGKYAFVTWGDWDLKDLLQ  107 (176)
T ss_pred             HHHHHHH--------------HhCCCeEEEeecHhhHHHHHH
Confidence            9999999              454  4555556999887654

This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional ho

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.26  E-value=4.1e-12  Score=104.08  Aligned_cols=130  Identities=19%  Similarity=0.329  Sum_probs=94.4

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCCccccccccccccCHHHHhhhh------CCCCCCCcCCccccccc-----
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL------TGPLSKAHCSGIFSDRG-----   80 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~------~~~~~C~~C~~~f~~~~-----   80 (253)
                      ..+|.|..|.|.|.+...|..|+..  |.. -.+|+.|+......++|.+|+      .+||+|..|++.|...+     
T Consensus       235 ~n~fqC~~C~KrFaTeklL~~Hv~r--Hvn-~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH  311 (467)
T KOG3608|consen  235 TNSFQCAQCFKRFATEKLLKSHVVR--HVN-CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKH  311 (467)
T ss_pred             CCchHHHHHHHHHhHHHHHHHHHHH--hhh-cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHH
Confidence            3478888888888888888888877  542 127888888888888888887      67888888888887653     


Q ss_pred             ----------ccc--cccccCChHHHHHHHHHcc-CCCC--CC---ccccCccchhhhhhccccccccccCCCceeeeec
Q 025404           81 ----------CNL--CMNIFDSPSSLIKHKEACS-LSAP--VP---FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDC  142 (253)
Q Consensus        81 ----------C~~--C~k~f~~~~~l~~H~~~h~-~~~~--~~---C~~~f~~~~~l~~h~~~~~~~r~~~~~~~~~~dc  142 (253)
                                |+.  |..+|.+..++++|++.++ |..|  |.   |++.|.+-.+|..|....++-+.+..-+-+.+..
T Consensus       312 ~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~  391 (467)
T KOG3608|consen  312 VQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKV  391 (467)
T ss_pred             HHhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeee
Confidence                      776  8888888888888888665 5443  44   8888888888888876555555444444444443


Q ss_pred             cc
Q 025404          143 EM  144 (253)
Q Consensus       143 E~  144 (253)
                      ..
T Consensus       392 ~e  393 (467)
T KOG3608|consen  392 DE  393 (467)
T ss_pred             cc
Confidence            33

>PTZ00315 2'-phosphotransferase; Provisional

Probab=99.24  E-value=1.9e-11  Score=108.65  Aligned_cols=105  Identities=21%  Similarity=0.252  Sum_probs=80.3

Q ss_pred             CceeeeecccccCC-----CCCcccccceeeeecCCCCe--EEeeeccCCC--CcccceeeeccCCHHhhcCCCCHHHHH
Q 025404          135 PKAVAMDCEMVGGG-----SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (253)
Q Consensus       135 ~~~~~~dcE~~g~~-----~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~--~i~~~~~~~~Git~~~l~~~~~~~~v~  205 (253)
                      ..++++|.|+||..     .+.++++ +.|.+--.++++  .|+.||+|..  +++++++++||||+++|+++++|.+|+
T Consensus        56 d~~IV~DlETTgl~~~~~~~dEIIEI-GaV~Vd~~ng~Ii~~F~~yVkP~~~p~Ls~fct~LTGITqe~V~~Ap~F~eVl  134 (582)
T PTZ00315         56 DAYVVLDFEATCEADRRIEDAEVIEF-PMVLVDARTATPVAEFQRYVRPVKNPVLSRFCTELTGITQSMVSRADPFPVVY  134 (582)
T ss_pred             CeEEEEEEecCCCCCCCCCCCceEEE-EEEEEEccCCEEEEEEEEEECCCCCCCCChhHhhhcCcCHHHHhcCCCHHHHH
Confidence            56899999999964     2456676 666663235655  7899999986  699999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhh-hhc
Q 025404          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR  244 (253)
Q Consensus       206 ~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~-~l~  244 (253)
                      .++.++|.+... +.   ....+..+|+||..||+. ||.
T Consensus       135 ~ef~~fL~~~~~-~e---~~~~~~~~vah~g~fDl~~fL~  170 (582)
T PTZ00315        135 CEALQFLAEAGL-GD---APPLRSYCVVTCGDWDLKTMLP  170 (582)
T ss_pred             HHHHHHHhcccc-cc---ccccCceEEEeccHHHHHHHHH
Confidence            999999932110 00   011234799999999995 773

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.17  E-value=9.9e-12  Score=110.27  Aligned_cols=55  Identities=31%  Similarity=0.535  Sum_probs=37.9

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus         7 ~~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      +-.+.+.+|.|+.|+|.|...+.|.+|.-.  |+|++| +|.+|.|.|..+..|..|.
T Consensus       887 ~~kte~gmyaCDqCDK~FqKqSSLaRHKYE--HsGqRPyqC~iCkKAFKHKHHLtEHk  942 (1007)
T KOG3623|consen  887 HAKTEDGMYACDQCDKAFQKQSSLARHKYE--HSGQRPYQCIICKKAFKHKHHLTEHK  942 (1007)
T ss_pred             cccCccccchHHHHHHHHHhhHHHHHhhhh--hcCCCCcccchhhHhhhhhhhhhhhh
Confidence            344556778888888888888888888777  888776 6666555555555444444

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.16  E-value=3.2e-12  Score=97.17  Aligned_cols=97  Identities=21%  Similarity=0.270  Sum_probs=73.1

Q ss_pred             ccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhh
Q 025404           45 KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKK  121 (253)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~  121 (253)
                      .|.+|+|.|...--|.+|+.    |   -...+..-|..|||.|.....|++|+|+|+|.+||+   |+++|.+.-+|..
T Consensus       119 tCrvCgK~F~lQRmlnrh~k----c---h~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsles  191 (267)
T KOG3576|consen  119 TCRVCGKKFGLQRMLNRHLK----C---HSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLES  191 (267)
T ss_pred             eeehhhhhhhHHHHHHHHhh----h---ccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHH
Confidence            88999999988888888862    1   001111127789999999999999999999999998   9999999999999


Q ss_pred             hcccccccc---ccCCCceeeeecccccCC
Q 025404          122 ISGAIDEKR---TCRGPKAVAMDCEMVGGG  148 (253)
Q Consensus       122 h~~~~~~~r---~~~~~~~~~~dcE~~g~~  148 (253)
                      |....++..   .+...+...+.||-||..
T Consensus       192 hl~kvhgv~~~yaykerr~kl~vcedcg~t  221 (267)
T KOG3576|consen  192 HLKKVHGVQHQYAYKERRAKLYVCEDCGYT  221 (267)
T ss_pred             HHHHHcCchHHHHHHHhhhheeeecccCCC
Confidence            986544322   233444566779999964

>PRK11779 sbcB exonuclease I; Provisional

Probab=99.13  E-value=1.1e-10  Score=102.93  Aligned_cols=103  Identities=16%  Similarity=0.211  Sum_probs=78.5

Q ss_pred             CCceeeeecccccCC--CCCcccccceeeeecCCCCe--EEeeeccCCCC--cccceeeeccCCHHhhcC-CCCHHHHHH
Q 025404          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLP--VTNYRYEVTGLTEEDIKN-AMPLKEVKD  206 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~--i~~~~~~~~Git~~~l~~-~~~~~~v~~  206 (253)
                      ...++++|+||+|..  .+.++++ |.|.+.+....+  .+..+++|..+  +.+..+.+||||++++.. +.+..++..
T Consensus         5 ~~~fvv~D~ETTGLdP~~DrIIei-AaVrvd~~~~~i~e~~~~~~~P~~~~lp~p~a~~IhGIT~e~l~~~g~~e~e~~~   83 (476)
T PRK11779          5 QPTFLWHDYETFGANPALDRPAQF-AGIRTDADLNIIGEPLVFYCKPADDYLPSPEAVLITGITPQEALEKGLPEAEFAA   83 (476)
T ss_pred             CCcEEEEEEECCCCCCCCCeeEEE-EEEEEeCCCceecceeEEEEcCCcCcCCCHHHHHHhCCCHHHHHhcCCCHHHHHH
Confidence            345899999999976  4677777 777764321122  47889999853  356789999999999965 467999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhcCCCCC
Q 025404          207 KILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMNYPD  249 (253)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~~~~~~  249 (253)
                      ++.+++..            .++++|||| +.||+.||+....+
T Consensus        84 ~i~~~l~~------------~~~~lVGhNni~FD~eflr~~~~r  115 (476)
T PRK11779         84 RIHAEFSQ------------PGTCILGYNNIRFDDEVTRYIFYR  115 (476)
T ss_pred             HHHHHHhc------------CCCEEEEeCchhhcHHHHHHHHHh
Confidence            99999921            367999997 79999998775433

>PRK00448 polC DNA polymerase III PolC; Validated

Probab=99.10  E-value=9.3e-11  Score=114.70  Aligned_cols=95  Identities=23%  Similarity=0.437  Sum_probs=82.6

Q ss_pred             CCceeeeecccccCC--CCCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHH
Q 025404          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~  209 (253)
                      ...++++|+|++|..  .+..+++ +.+.+.  +|.+  .++.+++|..+++.+.++++|||++++.+++++.+|+.++.
T Consensus       418 ~~~~VVfDLETTGL~~~~deIIEI-gAV~V~--~G~iie~F~~~V~P~~~I~~~~~~LTGIT~e~L~~aps~~EaL~~f~  494 (1437)
T PRK00448        418 DATYVVFDVETTGLSAVYDEIIEI-GAVKIK--NGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPKFK  494 (1437)
T ss_pred             cCcEEEEEhhhcCCCCchhhhhee-eeEEEe--CCeEeeeEEEEECCCCCCCHHHHHHhCCCHHHHcCCCCHHHHHHHHH
Confidence            356899999999965  4566666 776663  4555  68999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      +++              ++.+|||||+.||+.||+-
T Consensus       495 ~fi--------------gg~vLVAHNa~FD~~fL~~  516 (1437)
T PRK00448        495 EFC--------------GDSILVAHNASFDVGFINT  516 (1437)
T ss_pred             HHh--------------CCCEEEEeCccccHHHHHH
Confidence            999              7899999999999999853

>PHA02768 hypothetical protein; Provisional

Probab=98.92  E-value=4e-10  Score=68.17  Aligned_cols=43  Identities=19%  Similarity=0.453  Sum_probs=38.9

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLR   60 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~   60 (253)
                      .|+|+.||+.|+..++|..||++  |+  ++ +|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~--H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK--HN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh--cC--CcccCCcccceecccceeE
Confidence            58999999999999999999999  88  56 9999999999887764

>PHA00733 hypothetical protein

Probab=98.85  E-value=2.6e-09  Score=77.91  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=56.8

Q ss_pred             CCCcccccccccccCCHHHHHHh--hhhc-CCCCCcc-ccccccccccCHHHHhhhhC---CCCCCCcCCcccccccccc
Q 025404           11 STARHKCVACYKQFKRKDHLIEH--MKIS-YHSVHQP-KCAVCQKLSKSFESLREHLT---GPLSKAHCSGIFSDRGCNL   83 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H--~~~~-~H~~~~~-~C~~C~~~f~~~~~l~~H~~---~~~~C~~C~~~f~~~~C~~   83 (253)
                      .+|++.|..|.+.|.....|..+  ++.+ .+.+.+| .|+.|++.|.+.++|..|+.   .+|            .|+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~------------~C~~  104 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSK------------VCPV  104 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCc------------cCCC
Confidence            46788888888888877666655  1110 0233556 88888888888888888872   333            3677


Q ss_pred             cccccCChHHHHHHHHHccC
Q 025404           84 CMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        84 C~k~f~~~~~l~~H~~~h~~  103 (253)
                      |+++|.....|..|++..++
T Consensus       105 CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        105 CGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCccCCHHHHHHHHHHhcC
Confidence            78888888888888876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.78  E-value=4.2e-09  Score=96.07  Aligned_cols=110  Identities=23%  Similarity=0.398  Sum_probs=87.0

Q ss_pred             ccCCCceeeeecccccCC-------CCCccc-------ccceeeeecCCCCe----EEeeeccCCCCcccceeeeccCCH
Q 025404          131 TCRGPKAVAMDCEMVGGG-------SNGTLD-------LCARVCLVDEDENV----IFHTYVQPQLPVTNYRYEVTGLTE  192 (253)
Q Consensus       131 ~~~~~~~~~~dcE~~g~~-------~~~~~~-------ll~~v~iv~~~~~~----~~~~~v~P~~~i~~~~~~~~Git~  192 (253)
                      ....+..+++|-|.+...       .+++..       .+||+++++..|.-    -.|.||-.+..|.||.++++||-|
T Consensus       906 mPk~g~LVgiDAEFVtLq~Ee~Eir~DG~~stIkP~~msvARiScvRGeGp~eGiPFiDDYv~T~d~VvDYLTqySGI~P  985 (1118)
T KOG1275|consen  906 MPKSGDLVGIDAEFVTLQTEELEIRSDGKTSTIKPSRMSVARISCVRGEGPNEGIPFIDDYVSTDDKVVDYLTQYSGIKP  985 (1118)
T ss_pred             cCCCCceeeeehhheecchHHhccccCCceeEeccccceeEEEEEEcccCCCCCCccccceecchhHHHHHHHHhcCCCc
Confidence            344566788887776432       222221       23899998865433    678899999999999999999999


Q ss_pred             HhhcCC------CCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCCCCCC
Q 025404          193 EDIKNA------MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR  253 (253)
Q Consensus       193 ~~l~~~------~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~~~~  253 (253)
                      .||+..      .++..++.+|.-++.             .|.++|||++.+|+++|||.+|+.||+
T Consensus       986 GDLDp~~S~K~Lt~lK~~Y~Kl~~Li~-------------~GviFVGHGL~nDFrvINi~Vp~~Qii 1039 (1118)
T KOG1275|consen  986 GDLDPTTSEKRLTTLKVLYLKLRLLIQ-------------RGVIFVGHGLQNDFRVINIHVPEEQII 1039 (1118)
T ss_pred             cccCCccCcceehhHHHHHHHHHHHHH-------------cCcEEEcccccccceEEEEecChhhhe
Confidence            999754      468889999998884             899999999999999999999999874

>PHA02768 hypothetical protein; Provisional

Probab=98.73  E-value=7.5e-09  Score=62.66  Aligned_cols=42  Identities=14%  Similarity=0.200  Sum_probs=35.3

Q ss_pred             cccccccccCChHHHHHHHHHcc-CCCCCCccccCccchhhhh
Q 025404           80 GCNLCMNIFDSPSSLIKHKEACS-LSAPVPFEKTLSNAESQKK  121 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h~-~~~~~~C~~~f~~~~~l~~  121 (253)
                      .|+.||+.|.+.++|..|+++|+ +.++..|++.|.+.+.|..
T Consensus         7 ~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768          7 ECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             CcchhCCeeccHHHHHHHHHhcCCcccCCcccceecccceeEE
Confidence            48899999999999999999999 5555669999998776654

>PHA00733 hypothetical protein

Probab=98.57  E-value=7.2e-08  Score=70.39  Aligned_cols=53  Identities=23%  Similarity=0.486  Sum_probs=47.7

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus         7 ~~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      ++..+++||.|+.|++.|.....|..|++.  |.  .+ .|..|++.|.....|..|+
T Consensus        66 ~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~--h~--~~~~C~~CgK~F~~~~sL~~H~  119 (128)
T PHA00733         66 LTSKAVSPYVCPLCLMPFSSSVSLKQHIRY--TE--HSKVCPVCGKEFRNTDSTLDHV  119 (128)
T ss_pred             cccCCCCCccCCCCCCcCCCHHHHHHHHhc--CC--cCccCCCCCCccCCHHHHHHHH
Confidence            455678999999999999999999999998  63  34 9999999999999999998

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.37  E-value=5.5e-07  Score=80.47  Aligned_cols=101  Identities=18%  Similarity=0.389  Sum_probs=62.3

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccccccccc
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLC   84 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C   84 (253)
                      -++.+.|+.|++.|. ...|..|+++  |.  .+ .|+ ||+.+ ....|..|+     .+++.|+.|++.|.....   
T Consensus       450 l~~H~~C~~Cgk~f~-~s~LekH~~~--~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~---  519 (567)
T PLN03086        450 AKNHVHCEKCGQAFQ-QGEMEKHMKV--FH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGS---  519 (567)
T ss_pred             cccCccCCCCCCccc-hHHHHHHHHh--cC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCcc---
Confidence            356678999998885 5778899988  53  55 888 98755 568888886     455665555544421000   


Q ss_pred             cccc-CChHHHHHHHHHccCCCCCC---ccccCccchhhhhhc
Q 025404           85 MNIF-DSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKIS  123 (253)
Q Consensus        85 ~k~f-~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~  123 (253)
                      .-.+ ...+.|..|+..+ |.+++.   |++.+... .+..|+
T Consensus       520 ~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~  560 (567)
T PLN03086        520 AMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQ  560 (567)
T ss_pred             ccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHH
Confidence            0000 0245788888886 888776   44444432 344444

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.27  E-value=4.1e-07  Score=46.98  Aligned_cols=25  Identities=36%  Similarity=0.707  Sum_probs=22.6

Q ss_pred             HHHHhhhhcCCCCCcc-ccccccccccC
Q 025404           29 HLIEHMKISYHSVHQP-KCAVCQKLSKS   55 (253)
Q Consensus        29 ~l~~H~~~~~H~~~~~-~C~~C~~~f~~   55 (253)
                      +|..|+++  |++++| +|+.|++.|.+
T Consensus         1 ~l~~H~~~--H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRT--HTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHH--HSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhh--cCCCCCCCCCCCcCeeCc
Confidence            58899999  999999 99999999964

...

>PHA00616 hypothetical protein

Probab=98.24  E-value=4.3e-07  Score=52.34  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=29.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccccC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTL  113 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~~f  113 (253)
                      |+.||+.|.++++|..|++.|++++|+.|+..+
T Consensus         4 C~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y   36 (44)
T PHA00616          4 CLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFY   36 (44)
T ss_pred             cchhhHHHhhHHHHHHHHHHhcCCCccceeEEE
Confidence            788999999999999999999999999877553

>PHA00616 hypothetical protein

Probab=98.22  E-value=5.6e-07  Score=51.88  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      ||+|..||+.|..++.|..|++.  |+++++ .|+.-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~--~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS--VHKQNKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH--hcCCCccceeEE
Confidence            79999999999999999999999  888888 77653

>PHA00732 hypothetical protein

Probab=98.20  E-value=1e-06  Score=58.44  Aligned_cols=44  Identities=30%  Similarity=0.519  Sum_probs=35.8

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCCccccccccccccCHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~   63 (253)
                      ||.|+.|++.|.+...|..|++.+ |.+.  .|+.|++.|.   .|..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~-H~~~--~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRN-HTLT--KCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcc-cCCC--ccCCCCCEeC---Chhhhh
Confidence            689999999999999999999841 5532  7999999887   477786

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.17  E-value=6.4e-07  Score=75.66  Aligned_cols=88  Identities=18%  Similarity=0.261  Sum_probs=63.9

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCC-CccccccccccccCHHHHhhhhCCCCCCCcCCc--------c---------
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSV-HQPKCAVCQKLSKSFESLREHLTGPLSKAHCSG--------I---------   75 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~--------~---------   75 (253)
                      -|.|..|...|.+...|.+|.-.  ..- ....|.+|+|.|+-..||..|.....+-..-++        .         
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~--RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~e  344 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCP--RIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQE  344 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCC--eeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhh
Confidence            38999999999999999999742  221 223899999999999999999822111111000        0         


Q ss_pred             ---------cccccccccccccCChHHHHHHHHHccC
Q 025404           76 ---------FSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        76 ---------f~~~~C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                               -.-..|..|+|.|.+...|+.|+.+|+.
T Consensus       345 a~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  345 AERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             ccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence                     0001299999999999999999999874

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.10  E-value=5.2e-06  Score=74.37  Aligned_cols=115  Identities=11%  Similarity=0.287  Sum_probs=76.0

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCCcc-cccc--ccccccCHHHHhhhhCCCCCCCcCCcccccc-----------
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHLTGPLSKAHCSGIFSDR-----------   79 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~-----------   79 (253)
                      .-.|+.|..... ...|..|..   +-.... .|+.  ||..|.. ..+    ..++.|+.|++.|...           
T Consensus       407 ~V~C~NC~~~i~-l~~l~lHe~---~C~r~~V~Cp~~~Cg~v~~r-~el----~~H~~C~~Cgk~f~~s~LekH~~~~Hk  477 (567)
T PLN03086        407 TVECRNCKHYIP-SRSIALHEA---YCSRHNVVCPHDGCGIVLRV-EEA----KNHVHCEKCGQAFQQGEMEKHMKVFHE  477 (567)
T ss_pred             eEECCCCCCccc-hhHHHHHHh---hCCCcceeCCcccccceeec-ccc----ccCccCCCCCCccchHHHHHHHHhcCC
Confidence            347999987654 466778874   333344 7774  8887732 233    3446788888877532           


Q ss_pred             --cccccccccCChHHHHHHHHHccCCCCCC---ccccCc----------cchhhhhhccccccccccCCCceeeeeccc
Q 025404           80 --GCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLS----------NAESQKKISGAIDEKRTCRGPKAVAMDCEM  144 (253)
Q Consensus        80 --~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~----------~~~~l~~h~~~~~~~r~~~~~~~~~~dcE~  144 (253)
                        .|+ ||+.+ .+..|..|+++|..++|+.   |++.+.          ..+.|..|....         ....+.|..
T Consensus       478 pv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C---------G~rt~~C~~  546 (567)
T PLN03086        478 PLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC---------GSRTAPCDS  546 (567)
T ss_pred             CccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc---------CCcceEccc
Confidence              388 98755 5689999999999999987   556553          134677776432         124577888


Q ss_pred             ccCC
Q 025404          145 VGGG  148 (253)
Q Consensus       145 ~g~~  148 (253)
                      ||..
T Consensus       547 Cgk~  550 (567)
T PLN03086        547 CGRS  550 (567)
T ss_pred             cCCe
Confidence            8854

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.04  E-value=2.9e-06  Score=71.82  Aligned_cols=48  Identities=27%  Similarity=0.473  Sum_probs=41.2

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCC--------Cc-------------------------c-ccccccccccCHHHH
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSV--------HQ-------------------------P-KCAVCQKLSKSFESL   59 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~--------~~-------------------------~-~C~~C~~~f~~~~~l   59 (253)
                      -|+|+.|+|.|+...+|..|+|-  |..        .+                         . .|..|+|.|.+...|
T Consensus       295 EYrCPEC~KVFsCPANLASHRRW--HKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYL  372 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRW--HKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYL  372 (500)
T ss_pred             eecCCcccccccCchhhhhhhcc--cCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHH
Confidence            38999999999999999999987  621        11                         1 599999999999999


Q ss_pred             hhhh
Q 025404           60 REHL   63 (253)
Q Consensus        60 ~~H~   63 (253)
                      +.|+
T Consensus       373 rKHq  376 (500)
T KOG3993|consen  373 RKHQ  376 (500)
T ss_pred             HHhH
Confidence            9996

>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification]

Probab=98.01  E-value=1.4e-06  Score=65.12  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=74.2

Q ss_pred             CCceeeeecccccCC--CCCcccccceeeeecCCCCe---EEeeeccCCC----Ccccceeee---ccCCHHhhcCCCCH
Q 025404          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV---IFHTYVQPQL----PVTNYRYEV---TGLTEEDIKNAMPL  201 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~---~~~~~v~P~~----~i~~~~~~~---~Git~~~l~~~~~~  201 (253)
                      ..+++.+||||||..  .+.++++  ...|.|.+.+.   -++..++-+.    ...+|..+.   +|+|..-++...++
T Consensus        25 ~q~lVWiD~EMTGLdvekd~i~Ei--acIITD~dL~~~~egpd~vI~~~~evld~MneWc~ehhg~SGLt~kv~~S~~tl  102 (208)
T KOG3242|consen   25 KQPLVWIDCEMTGLDVEKDRIIEI--ACIITDGDLNPVAEGPDLVIHQPKEVLDKMNEWCIEHHGNSGLTEKVLASKITL  102 (208)
T ss_pred             cCceEEEeeeccccccccceeEEE--EEEEecCCccccccCccchhcCCHHHHHHHHHHHHHhccchhHHHHHHHhhccH
Confidence            456799999999965  5555554  23344444444   3444554333    334555544   47998888999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCCC
Q 025404          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDH  250 (253)
Q Consensus       202 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~  250 (253)
                      ++|..++.+|+..    ..+    .+..+|.|+++..|..||.-++|+.
T Consensus       103 ~~aEnevl~yikk----~ip----~~~~~laGNSV~~DrlFl~k~mPk~  143 (208)
T KOG3242|consen  103 ADAENEVLEYIKK----HIP----KGKCPLAGNSVYMDRLFLKKYMPKL  143 (208)
T ss_pred             HHHHHHHHHHHHH----hCC----CCCCCccCcchhhHHHHHHHHhHHH
Confidence            9999999999931    111    2456999999999999999888764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.90  E-value=5.5e-06  Score=42.70  Aligned_cols=22  Identities=23%  Similarity=0.298  Sum_probs=17.8

Q ss_pred             HHHHHHHHccCCCCCC---ccccCc
Q 025404           93 SLIKHKEACSLSAPVP---FEKTLS  114 (253)
Q Consensus        93 ~l~~H~~~h~~~~~~~---C~~~f~  114 (253)
                      +|.+|+++|++++||+   |+++|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            5889999999999997   665554

...

>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=97.77  E-value=6.7e-05  Score=59.30  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=56.4

Q ss_pred             eeeecccccCCC--C-CcccccceeeeecC-CCCeE-EeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHH
Q 025404          138 VAMDCEMVGGGS--N-GTLDLCARVCLVDE-DENVI-FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (253)
Q Consensus       138 ~~~dcE~~g~~~--~-~~~~ll~~v~iv~~-~~~~~-~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~  212 (253)
                      .++|.|++|...  . ..-++ ..++++.. +|... +.....+......      ||+...+...++..+++..+.+++
T Consensus         2 ~~~DIEt~~~~~~p~~~~d~I-i~I~~~~~~~g~~~~~~~~~~~~~~~~~------~i~~~~v~~~~~E~~lL~~f~~~i   74 (199)
T cd05160           2 LSFDIETTPPVGGPEPDRDPI-ICITYADSFDGVKVVFLLKTSTVGDDIE------FIDGIEVEYFADEKELLKRFFDII   74 (199)
T ss_pred             ccEEEeecCCCCCcCCCCCCE-EEEEEEEeeCCceeeEEEeecccCCcCC------CCCCceEEEeCCHHHHHHHHHHHH
Confidence            579999998621  1 11222 44444433 45442 2222222111111      888888999999999999999999


Q ss_pred             hcCCCCCcccccCCCCeEEEeech-hhhhhhhcC
Q 025404          213 NNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRM  245 (253)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~~  245 (253)
                      ..        .+   -.+|||||+ .||+.+|.-
T Consensus        75 ~~--------~d---pdiivg~N~~~FD~~~L~~   97 (199)
T cd05160          75 RE--------YD---PDILTGYNIDDFDLPYLLK   97 (199)
T ss_pred             Hh--------cC---CCEEEEeccCCCcHHHHHH
Confidence            31        00   149999999 899999864

The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.74  E-value=1.4e-05  Score=39.81  Aligned_cols=22  Identities=41%  Similarity=0.689  Sum_probs=19.9

Q ss_pred             ccccccccccCCHHHHHHhhhh
Q 025404           15 HKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      |.|+.|++.|..+..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6899999999999999999886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.71  E-value=2.3e-05  Score=39.06  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=18.6

Q ss_pred             ccccccccCChHHHHHHHHHc
Q 025404           81 CNLCMNIFDSPSSLIKHKEAC  101 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h  101 (253)
                      |+.|++.|.+.+.|..|++.|
T Consensus         3 C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    3 CPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             ETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHhHC
Confidence            888999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification]

Probab=97.71  E-value=2.5e-05  Score=58.08  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=74.0

Q ss_pred             CCceeeeecccccCC--CCCcccccceeeeecCCCCeEEee---ecc-CC---CCcccceeeec---cCCHHhhcCCCCH
Q 025404          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVIFHT---YVQ-PQ---LPVTNYRYEVT---GLTEEDIKNAMPL  201 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~~~~~---~v~-P~---~~i~~~~~~~~---Git~~~l~~~~~~  201 (253)
                      ..+.+.+||||||..  .+.++++  ...|.|.+.+++-.-   .|. |.   ....+|+++.+   |++..-.+...+.
T Consensus         5 ~~nLiWIDlEMTGLd~~~drIIEi--A~iVTD~~Lnilaegp~~~Ihq~~e~L~~Mdew~~~~H~~sGL~~rV~~S~~t~   82 (184)
T COG1949           5 KNNLIWIDLEMTGLDPERDRIIEI--ATIVTDANLNILAEGPVIAIHQSDEQLAKMDEWNTETHGRSGLTERVKASTVTE   82 (184)
T ss_pred             CCceEEEeeeeccCCcCcceEEEE--EEEEecCcccccccCceEEEeCCHHHHHHHHHHHHHccccccHHHHHHHhhccH
Confidence            456799999999976  4455554  334445555553221   111 21   23456766665   6887777888999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCC
Q 025404          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD  249 (253)
Q Consensus       202 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~  249 (253)
                      .+|..++++||.    .|-+. .+   .++-|+++..|-+||--.+|+
T Consensus        83 ~~aE~~~l~flk----kwvp~-~~---spicGNSI~qDRrFl~r~MP~  122 (184)
T COG1949          83 AEAEAQTLDFLK----KWVPK-GV---SPICGNSIAQDRRFLFRYMPK  122 (184)
T ss_pred             HHHHHHHHHHHH----HhCCC-CC---CCCccchhhHHHHHHHHHhhh
Confidence            999999999993    45555 33   499999999999999888776

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.38  E-value=0.00012  Score=37.92  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=21.6

Q ss_pred             cccccccccccCCHHHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      ||+|..|++.|.....|..|++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            68999999999999999999988

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.36  E-value=0.0002  Score=44.00  Aligned_cols=46  Identities=26%  Similarity=0.481  Sum_probs=28.1

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCCc-c-ccccccccccCHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQ-P-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~-~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      .|.|+.|++ ..+...|..|.... |..+. . .|++|...+.  .+|..|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~-H~~~~~~v~CPiC~~~~~--~~l~~Hl   49 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDE-HRSESKNVVCPICSSRVT--DNLIRHL   49 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhH-CcCCCCCccCCCchhhhh--hHHHHHH
Confidence            478888888 45567788887663 65432 2 6666655433  2454444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.34  E-value=0.00014  Score=36.33  Aligned_cols=22  Identities=36%  Similarity=0.765  Sum_probs=18.3

Q ss_pred             ccccccccccCCHHHHHHhhhh
Q 025404           15 HKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      |.|+.|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            6899999999999999999987

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.23  E-value=0.00022  Score=35.55  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=17.7

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |+.|++.|.+...|+.|+++|+
T Consensus         3 C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    3 CPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             -SSTS-EESSHHHHHHHHHHHS
T ss_pred             CcCCCCcCCcHHHHHHHHHhhC
Confidence            7889999999999999998874

...

>PHA00732 hypothetical protein

Probab=97.20  E-value=0.00029  Score=46.78  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=15.4

Q ss_pred             ccccccccCChHHHHHHHHH-ccCCCCCCccccCc
Q 025404           81 CNLCMNIFDSPSSLIKHKEA-CSLSAPVPFEKTLS  114 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~-h~~~~~~~C~~~f~  114 (253)
                      |..||+.|.+.+.|+.|++. |.+...-.|+++|.
T Consensus         4 C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~   38 (79)
T PHA00732          4 CPICGFTTVTLFALKQHARRNHTLTKCPVCNKSYR   38 (79)
T ss_pred             CCCCCCccCCHHHHHHHhhcccCCCccCCCCCEeC
Confidence            44455555555555555542 33322222444444

>KOG0542 consensus Predicted exonuclease [Replication, recombination and repair]

Probab=97.19  E-value=0.00021  Score=57.00  Aligned_cols=77  Identities=21%  Similarity=0.360  Sum_probs=58.2

Q ss_pred             eeeeecccccCC------CCCcccccceeeeec-CCCCe--EEeeeccCCC--CcccceeeeccCCHHhhcCCCCHHHHH
Q 025404          137 AVAMDCEMVGGG------SNGTLDLCARVCLVD-EDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (253)
Q Consensus       137 ~~~~dcE~~g~~------~~~~~~ll~~v~iv~-~~~~~--~~~~~v~P~~--~i~~~~~~~~Git~~~l~~~~~~~~v~  205 (253)
                      ++++|.|.|-..      ...++++ ..|.+.+ +.+.+  .|+.||+|..  .+.+|.+.++||.++.|+.|++|.+|+
T Consensus        58 LliiDFEaTC~e~~~~~~~~EIIEf-P~V~l~~~~~~~Ie~eF~qYVrP~~np~LS~fC~~lTgI~Q~tVD~a~~f~~vl  136 (280)
T KOG0542|consen   58 LLILDFEATCEEGNKPHYVQEIIEF-PAVLLDNTETSIIEDEFHQYVRPVENPRLSDFCTSLTGIQQETVDEAPTFPQVL  136 (280)
T ss_pred             EEEEeeeeeccccCCCCcchheeec-ceeEeeccchhhHHHHHHhhcCcccCchHHHHHHHhhCchHhhhccCCCHHHHH
Confidence            478888877321      2344455 4443322 34444  6899999985  478999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 025404          206 DKILEILNN  214 (253)
Q Consensus       206 ~~l~~~~~~  214 (253)
                      +++..+|.+
T Consensus       137 ~~f~~Wlr~  145 (280)
T KOG0542|consen  137 SEFDSWLRK  145 (280)
T ss_pred             HHHHHHHHH
Confidence            999999954

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.08  E-value=0.00017  Score=59.25  Aligned_cols=28  Identities=32%  Similarity=0.523  Sum_probs=23.2

Q ss_pred             CCccccc--ccccccCCHHHHHHhhhhcCCC
Q 025404           12 TARHKCV--ACYKQFKRKDHLIEHMKISYHS   40 (253)
Q Consensus        12 ~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~   40 (253)
                      +|||+|+  .|.|+|+..-.|+-|+. |+|-
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~l-hGH~  376 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHML-HGHQ  376 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhh-cccc
Confidence            5999995  59999999999999986 3453

>smart00355 ZnF_C2H2 zinc finger

Probab=96.70  E-value=0.0014  Score=33.06  Aligned_cols=24  Identities=46%  Similarity=0.789  Sum_probs=21.2

Q ss_pred             ccccccccccCCHHHHHHhhhhcCCC
Q 025404           15 HKCVACYKQFKRKDHLIEHMKISYHS   40 (253)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (253)
                      |.|+.|++.|.....|..|++.  |.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~--H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT--HX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH--hc
Confidence            6799999999999999999987  64

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.70  E-value=0.0012  Score=45.68  Aligned_cols=74  Identities=26%  Similarity=0.429  Sum_probs=19.7

Q ss_pred             cccccccccCCHHHHHHhhhhcCCCCCccccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccccCChHHHH
Q 025404           16 KCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (253)
Q Consensus        16 ~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~   95 (253)
                      +|..|+..|.....|..|+... |.-..+..    ..+.....+..++...        ......|..|++.|.+...|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~-H~~~~~~~----~~l~~~~~~~~~~~~~--------~~~~~~C~~C~~~f~s~~~l~   67 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKK-HGFDIPDQ----KYLVDPNRLLNYLRKK--------VKESFRCPYCNKTFRSREALQ   67 (100)
T ss_dssp             -------------------------------------------------------------SSEEBSSSS-EESSHHHHH
T ss_pred             Cccccccccccccccccccccc-cccccccc----cccccccccccccccc--------cCCCCCCCccCCCCcCHHHHH
Confidence            4888999999999999998652 43222211    1111222222222100        000124888999999999999


Q ss_pred             HHHHHcc
Q 025404           96 KHKEACS  102 (253)
Q Consensus        96 ~H~~~h~  102 (253)
                      .||+.+.
T Consensus        68 ~Hm~~~~   74 (100)
T PF12756_consen   68 EHMRSKH   74 (100)
T ss_dssp             HHHHHTT
T ss_pred             HHHcCcc
Confidence            9999764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.66  E-value=0.00083  Score=34.69  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=18.0

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |..|++.|.+...|..|++.|.
T Consensus         4 C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    4 CDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             ETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCccCCccCChhHHHHHhHHhc
Confidence            7778888888888888887764

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.62  E-value=0.0016  Score=38.46  Aligned_cols=26  Identities=23%  Similarity=0.566  Sum_probs=18.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      |++|+..+.+..+|++|+.++++.||
T Consensus        27 CP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   27 CPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             -TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCcchhhccchhhHHHHHHHHhcccC
Confidence            77778888888888888888877776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.57  E-value=0.002  Score=32.40  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=19.3

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |..|+++|.+.+.|..|++.|.
T Consensus         3 C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        3 CPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCcchhCCHHHHHHHHHHhc
Confidence            7889999999999999998774

>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

Probab=96.37  E-value=0.0045  Score=42.81  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=17.3

Q ss_pred             eEEEeechhhhhhhhcCCCCC
Q 025404          229 RLLVGHGLEHDLDSLRMNYPD  249 (253)
Q Consensus       229 ~~lv~h~~~~D~~~l~~~~~~  249 (253)
                      .++||||+.||+.||+-...+
T Consensus        45 ~v~V~hn~~fD~~fL~~~~~~   65 (96)
T cd06125          45 AILVGHNGSFDLPFLNNRCAE   65 (96)
T ss_pred             CEEEEeCcHHhHHHHHHHHHH
Confidence            599999999999998765433

The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.36  E-value=0.0032  Score=37.28  Aligned_cols=26  Identities=23%  Similarity=0.475  Sum_probs=12.6

Q ss_pred             CCCcccccccccccCCHHHHHHhhhh
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      .+.|..|+.|+..+.+..+|.+|+.+
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~   46 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEI   46 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHH
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHH
Confidence            34556666666666666666666655

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.25  E-value=0.0067  Score=37.10  Aligned_cols=44  Identities=30%  Similarity=0.480  Sum_probs=30.2

Q ss_pred             ccccccccccCHHHHhhhh-------CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccC
Q 025404           45 KCAVCQKLSKSFESLREHL-------TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-------~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      .|+.|++. .+...|..|.       .+.+.            |+.|...+.  .+|..|+..+++
T Consensus         4 ~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~------------CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    4 TCPYCGKG-FSESSLVEHCEDEHRSESKNVV------------CPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CCCCCCCc-cCHHHHHHHHHhHCcCCCCCcc------------CCCchhhhh--hHHHHHHHHhcC
Confidence            79999994 5567899997       12344            555555444  489999987653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides

Probab=96.01  E-value=0.029  Score=42.88  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       204 v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      +...|.+++.            +.+.+.||||+.||+.+|.-
T Consensus        65 ~~~~l~~ll~------------~~~i~kv~~n~~~D~~~L~~   94 (176)
T PF01612_consen   65 ILDALKELLE------------DPNIIKVGHNAKFDLKWLYR   94 (176)
T ss_dssp             HHHHHHHHHT------------TTTSEEEESSHHHHHHHHHH
T ss_pred             hHHHHHHHHh------------CCCccEEEEEEechHHHHHH
Confidence            7888889993            25679999999999999875

This domain consists of the amino-terminal half of the Klenow fragment in E. coli polI it is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D) [].; GO: 0003676 nucleic acid binding, 0008408 3'-5' exonuclease activity, 0006139 nucleobase-containing compound metabolic process, 0005622 intracellular; PDB: 2HBK_A 2HBJ_A 2HBM_A 2HBL_A 2FC0_A 2FBY_A 2FBX_A 2FBT_A 2FBV_A 1YT3_A ....

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.01  E-value=0.0037  Score=31.51  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=18.7

Q ss_pred             ccccccccccCCHHHHHHhhhh
Q 025404           15 HKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      |.|+.|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5788899999998888888875

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.54  E-value=0.0074  Score=31.11  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=17.9

Q ss_pred             ccccccccccCCHHHHHHhhhh
Q 025404           15 HKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888765

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.51  E-value=0.007  Score=41.79  Aligned_cols=20  Identities=40%  Similarity=0.753  Sum_probs=17.9

Q ss_pred             cccccccccccCHHHHhhhh
Q 025404           44 PKCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~   63 (253)
                      ..|..|++.|.+...|..|+
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm   70 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHM   70 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHH
T ss_pred             CCCCccCCCCcCHHHHHHHH
Confidence            48999999999999999999

>PRK04860 hypothetical protein; Provisional

Probab=95.44  E-value=0.0045  Score=46.93  Aligned_cols=39  Identities=13%  Similarity=0.254  Sum_probs=32.1

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHH
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFE   57 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~   57 (253)
                      -+|.|. |++   ....+.+|.++  |+++++ .|..|++.|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri--~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRV--VRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHH--hcCCccEECCCCCceeEEec
Confidence            469997 987   56778899999  999888 9999998887543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.14  E-value=0.01  Score=29.86  Aligned_cols=21  Identities=33%  Similarity=0.680  Sum_probs=16.0

Q ss_pred             ccccccccCChHHHHHHHHHc
Q 025404           81 CNLCMNIFDSPSSLIKHKEAC  101 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h  101 (253)
                      |..|++.|.+...|+.|++.+
T Consensus         3 C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    3 CDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             ETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCcCCHHHHHHHHCcC
Confidence            777888888888888887643

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=94.66  E-value=0.013  Score=48.51  Aligned_cols=56  Identities=29%  Similarity=0.556  Sum_probs=28.4

Q ss_pred             Ccc-cccc--ccccccCHHHHhhhh-CC-------CCCCCcCCccc----ccccccccccccCChHHHHHH
Q 025404           42 HQP-KCAV--CQKLSKSFESLREHL-TG-------PLSKAHCSGIF----SDRGCNLCMNIFDSPSSLIKH   97 (253)
Q Consensus        42 ~~~-~C~~--C~~~f~~~~~l~~H~-~~-------~~~C~~C~~~f----~~~~C~~C~k~f~~~~~l~~H   97 (253)
                      ++| +|++  |+|.+.....|+-|+ .+       +-+-+.--..|    +.+.|+.|+|.|+....|+-|
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYH  417 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH  417 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceec
Confidence            355 6655  666666666666665 11       11122222233    223356666666655555555

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.52  E-value=0.026  Score=28.06  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=16.6

Q ss_pred             ccccccccCChHHHHHHHHHccC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      |+.|+.... ...|..|++.|++
T Consensus         3 C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    3 CPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             -SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCcCC-HHHHHHHHHhhCc
Confidence            788888887 8899999988753

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.51  E-value=0.032  Score=28.18  Aligned_cols=20  Identities=40%  Similarity=0.982  Sum_probs=13.4

Q ss_pred             ccccccccCChHHHHHHHHHc
Q 025404           81 CNLCMNIFDSPSSLIKHKEAC  101 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h  101 (253)
                      |+.||+.| ..+.|..|+.+.
T Consensus         5 C~~CgR~F-~~~~l~~H~~~C   24 (25)
T PF13913_consen    5 CPICGRKF-NPDRLEKHEKIC   24 (25)
T ss_pred             CCCCCCEE-CHHHHHHHHHhc
Confidence            66777777 466777776553

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.45  E-value=0.021  Score=28.41  Aligned_cols=21  Identities=33%  Similarity=0.513  Sum_probs=16.9

Q ss_pred             ccccccccccCCHHHHHHhhhh
Q 025404           15 HKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      |+|+.|+.... ...|..|++.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            68999998887 8899999987

>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair]

Probab=93.84  E-value=0.34  Score=41.54  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=70.0

Q ss_pred             CCceeeeecccccCC--CCCcccccceeeeecCCCCe---EEeeeccCCCCc--ccceeeeccCCHHhhc-CCCCHHHHH
Q 025404          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV---IFHTYVQPQLPV--TNYRYEVTGLTEEDIK-NAMPLKEVK  205 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~---~~~~~v~P~~~i--~~~~~~~~Git~~~l~-~~~~~~~v~  205 (253)
                      ...+..+|-|+-|..  .++..++ +.|.. |.+-++   -...|++|....  .+..+=++||||.... ++.+..+..
T Consensus         8 ~~tF~~yDYETfG~~Pa~DRPaQF-AgiRT-D~~~NiIgeP~~fyCkpsdDyLP~P~a~LITGITPQ~~~~~G~~E~~F~   85 (475)
T COG2925           8 QPTFLFYDYETFGVHPALDRPAQF-AGIRT-DIEFNIIGEPIVFYCKPADDYLPQPGAVLITGITPQEAREKGINEAAFA   85 (475)
T ss_pred             CCcEEEEehhhcCCCcccccchhh-heeec-cccccccCCCeEEEecCccccCCCCCceeeecCCHHHHHhcCCChHHHH
Confidence            345789999999965  5566666 55543 222233   344577777542  2468889999999875 568899999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCeEEEee-chhhhhhhhcC
Q 025404          206 DKILEILNNGESTGRLMLDDGKARLLVGH-GLEHDLDSLRM  245 (253)
Q Consensus       206 ~~l~~~~~~~~~~~~~~~~~~~~~~lv~h-~~~~D~~~l~~  245 (253)
                      ..|...++.            .++.+||+ |+.||=.|-+-
T Consensus        86 ~~I~~~ls~------------P~Tcv~GYNniRFDDEvtRy  114 (475)
T COG2925          86 ARIHAELTQ------------PNTCVLGYNNIRFDDEVTRY  114 (475)
T ss_pred             HHHHHHhCC------------CCeeeecccccccchHHHHH
Confidence            999988843            67799995 59999887664

>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases

Probab=93.75  E-value=0.24  Score=38.94  Aligned_cols=39  Identities=15%  Similarity=0.274  Sum_probs=28.7

Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeech-hhhhhhhc
Q 025404          195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (253)
Q Consensus       195 l~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~  244 (253)
                      +....+-.++..++.+++..-+           -.+|||||. .||+.+|.
T Consensus        50 v~~~~~E~~lL~~F~~~i~~~d-----------pdiivgyN~~~FD~pyL~   89 (195)
T cd05780          50 VEVVKTEKEMIKRFIEIVKEKD-----------PDVIYTYNGDNFDFPYLK   89 (195)
T ss_pred             EEEeCCHHHHHHHHHHHHHHcC-----------CCEEEecCCCCCcHHHHH
Confidence            3445677899999999993100           249999995 59999885

The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show

>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=93.67  E-value=0.26  Score=39.22  Aligned_cols=36  Identities=25%  Similarity=0.508  Sum_probs=28.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeech-hhhhhhhc
Q 025404          198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (253)
Q Consensus       198 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~  244 (253)
                      ..+..++...+.+++.+-+           -.||||||+ .||+.+|.
T Consensus        55 ~~~E~~lL~~f~~~i~~~d-----------Pdii~g~N~~~FD~pyl~   91 (207)
T cd05785          55 DAAEKELLEELVAIIRERD-----------PDVIEGHNIFRFDLPYLR   91 (207)
T ss_pred             CCCHHHHHHHHHHHHHHhC-----------CCEEeccCCcccCHHHHH
Confidence            5789999999999994211           149999998 99999975

A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.28  E-value=0.069  Score=26.94  Aligned_cols=21  Identities=38%  Similarity=0.694  Sum_probs=15.7

Q ss_pred             ccccccccccCCHHHHHHhhhh
Q 025404           15 HKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      .+|+.|++.| ....|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4688888888 45678888754

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.08  E-value=0.036  Score=48.60  Aligned_cols=113  Identities=24%  Similarity=0.339  Sum_probs=79.9

Q ss_pred             CcccccccccccCCHHHHHHhhh--hcCCCCC--cc-ccc--cccccccCHHHHhhhh-----CCCCCC--CcCCccccc
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMK--ISYHSVH--QP-KCA--VCQKLSKSFESLREHL-----TGPLSK--AHCSGIFSD   78 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~--~~~H~~~--~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C--~~C~~~f~~   78 (253)
                      .++.|..|...|+....|..|.+  .  |+++  ++ .|.  .|++.|.+...+..|.     ..++.+  ..|.+.+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~--h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVN--HSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSP  365 (467)
T ss_pred             cCCCCccccCCccccccccccccccc--cccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccc
Confidence            58999999999999999999999  7  9999  88 999  7999999999999997     222222  223222221


Q ss_pred             cc-----------------------ccccccccCChHHHHHHHHHccCCCCCC-----ccccCccchhhhhhccccc
Q 025404           79 RG-----------------------CNLCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKISGAID  127 (253)
Q Consensus        79 ~~-----------------------C~~C~k~f~~~~~l~~H~~~h~~~~~~~-----C~~~f~~~~~l~~h~~~~~  127 (253)
                      ..                       -..|-..+.....+..|...|....++.     |...+.....+..|.+.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (467)
T COG5048         366 LLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT  442 (467)
T ss_pred             ccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccc
Confidence            10                       2336667777777777776666554332     7777777777777775443

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=93.04  E-value=0.057  Score=27.53  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=15.0

Q ss_pred             CCCcCCcccccc--cccccccccC
Q 025404           68 SKAHCSGIFSDR--GCNLCMNIFD   89 (253)
Q Consensus        68 ~C~~C~~~f~~~--~C~~C~k~f~   89 (253)
                      .|+.|++.....  .|+.||..|.
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCCc
Confidence            477777766543  3888888775

Several members are annotated as putative helicases.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.92  E-value=0.079  Score=28.87  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.0

Q ss_pred             cccccccccccCCHHHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      +|.|+.|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999998889888865

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=92.80  E-value=0.079  Score=27.15  Aligned_cols=19  Identities=32%  Similarity=0.679  Sum_probs=13.4

Q ss_pred             ccccccccccCHHHHhhhh
Q 025404           45 KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~   63 (253)
                      .|..|++.|.+...|..|+
T Consensus         3 ~C~~C~k~f~~~~~~~~H~   21 (27)
T PF12171_consen    3 YCDACDKYFSSENQLKQHM   21 (27)
T ss_dssp             BBTTTTBBBSSHHHHHCCT
T ss_pred             CcccCCCCcCCHHHHHHHH
Confidence            4677777777777777775

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases

Probab=90.68  E-value=1.4  Score=34.48  Aligned_cols=37  Identities=11%  Similarity=0.180  Sum_probs=28.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhcC
Q 025404          198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRM  245 (253)
Q Consensus       198 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~~  245 (253)
                      ..+..++...+.+++..-           .-.+|+|+| ..||+.+|.-
T Consensus        45 ~~~E~~lL~~F~~~i~~~-----------dPd~i~gyN~~~FDlpyl~~   82 (188)
T cd05781          45 GLDDRKIIREFVKYVKEY-----------DPDIIVGYNSNAFDWPYLVE   82 (188)
T ss_pred             CCCHHHHHHHHHHHHHHc-----------CCCEEEecCCCcCcHHHHHH
Confidence            478899999999999421           113999999 6699999753

The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.43  E-value=0.39  Score=44.41  Aligned_cols=72  Identities=24%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             CCHHHHHHhhhhcCCCCCc-------c-ccccccccccCHHHHhhhh-CCCCCCCcCCccccc-ccccccccccCChHHH
Q 025404           25 KRKDHLIEHMKISYHSVHQ-------P-KCAVCQKLSKSFESLREHL-TGPLSKAHCSGIFSD-RGCNLCMNIFDSPSSL   94 (253)
Q Consensus        25 ~~~~~l~~H~~~~~H~~~~-------~-~C~~C~~~f~~~~~l~~H~-~~~~~C~~C~~~f~~-~~C~~C~k~f~~~~~l   94 (253)
                      .....|+.|+.. .|..-.       . .+..+.+.| +...|..|+ .+..    +++.+.. .-|..|...|.....|
T Consensus       125 ~s~~~Lk~H~~~-~H~~~~c~lC~~~~kif~~e~k~Y-t~~el~~h~~~gd~----d~~s~rGhp~C~~C~~~fld~~el  198 (669)
T KOG2231|consen  125 KSVENLKNHMRD-QHKLHLCSLCLQNLKIFINERKLY-TRAELNLHLMFGDP----DDESCRGHPLCKFCHERFLDDDEL  198 (669)
T ss_pred             hHHHHHHHHHHH-hhhhhccccccccceeeeeeeehe-hHHHHHHHHhcCCC----ccccccCCccchhhhhhhccHHHH
Confidence            366778888843 143221       1 223333333 445566666 2211    2223322 2366666666666666


Q ss_pred             HHHHHHcc
Q 025404           95 IKHKEACS  102 (253)
Q Consensus        95 ~~H~~~h~  102 (253)
                      .+|++.++
T Consensus       199 ~rH~~~~h  206 (669)
T KOG2231|consen  199 YRHLRFDH  206 (669)
T ss_pred             HHhhccce
Confidence            66665443

>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases

Probab=90.22  E-value=0.37  Score=37.43  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=29.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          197 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       197 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      +++++.++...|..++.+            .+.++||||+.||+.+|+.
T Consensus        48 ~~~~~~~~~~~l~~~l~~------------~~~~~v~hn~k~d~~~l~~   84 (193)
T cd06139          48 EQLPREEVLAALKPLLED------------PSIKKVGQNLKFDLHVLAN   84 (193)
T ss_pred             cCCCHHHHHHHHHHHHhC------------CCCcEEeeccHHHHHHHHH
Confidence            456788999999999931            3348999999999999963

Escherichia coli-like Polymerase I (Pol I), a subgroup of family-A DNA polymerases, contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase domain. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The 3'-5' exonuclease domain of DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. E. coli DNA Pol I is involved in genome replication but is not the main replicating enzyme. It is also implicated in DNA repair.

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=89.04  E-value=0.19  Score=36.34  Aligned_cols=25  Identities=32%  Similarity=0.708  Sum_probs=16.8

Q ss_pred             CCCCCcCCccccccc------ccccc-cccCC
Q 025404           66 PLSKAHCSGIFSDRG------CNLCM-NIFDS   90 (253)
Q Consensus        66 ~~~C~~C~~~f~~~~------C~~C~-k~f~~   90 (253)
                      |+.|..||+.|..-+      |+.|| +.|.+
T Consensus         1 PH~Ct~Cg~~f~dgs~eil~GCP~CGg~kF~y   32 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGSKEILSGCPECGGNKFQY   32 (131)
T ss_pred             CcccCcCCCCcCCCcHHHHccCcccCCcceEE
Confidence            456777777776543      88887 56654

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=88.88  E-value=0.21  Score=30.18  Aligned_cols=28  Identities=21%  Similarity=0.509  Sum_probs=23.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhh
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      ..||--+.|+.|+..|.....+.+|+.-
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            4578888999999999988888888864

>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases

Probab=88.54  E-value=1.6  Score=34.25  Aligned_cols=36  Identities=17%  Similarity=0.265  Sum_probs=26.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhc
Q 025404          198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR  244 (253)
Q Consensus       198 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~  244 (253)
                      -.+-.++...+.+++.+-        +-   .||+||| ..||+.+|.
T Consensus        48 ~~~E~~lL~~f~~~i~~~--------dP---Dvi~g~N~~~FD~~yl~   84 (193)
T cd05784          48 FADEKSLLLALIAWFAQY--------DP---DIIIGWNVINFDLRLLQ   84 (193)
T ss_pred             ECCHHHHHHHHHHHHHhh--------CC---CEEEECCCcCcCHHHHH
Confidence            468888999999999421        11   3999999 567999874

The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.14  E-value=0.23  Score=39.74  Aligned_cols=13  Identities=38%  Similarity=0.667  Sum_probs=9.6

Q ss_pred             ccccccccccCHH
Q 025404           45 KCAVCQKLSKSFE   57 (253)
Q Consensus        45 ~C~~C~~~f~~~~   57 (253)
                      .|++|++.|.++.
T Consensus         7 ~CPvC~~~F~~~~   19 (214)
T PF09986_consen    7 TCPVCGKEFKTKK   19 (214)
T ss_pred             ECCCCCCeeeeeE
Confidence            6888888887664

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=88.01  E-value=0.3  Score=34.45  Aligned_cols=10  Identities=20%  Similarity=0.468  Sum_probs=5.7

Q ss_pred             cccccccccc
Q 025404           45 KCAVCQKLSK   54 (253)
Q Consensus        45 ~C~~C~~~f~   54 (253)
                      .|+.||++|-
T Consensus        11 ~Cp~CG~kFY   20 (108)
T PF09538_consen   11 TCPSCGAKFY   20 (108)
T ss_pred             cCCCCcchhc
Confidence            5666665553

The function of members of this family is unknown.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=87.94  E-value=0.32  Score=26.33  Aligned_cols=19  Identities=32%  Similarity=0.597  Sum_probs=15.9

Q ss_pred             ccccccccCChHHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHKE   99 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~   99 (253)
                      |..|++.|.+...+..|+.
T Consensus         6 C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        6 CKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             ccccCCccCCHHHHHHHHC
Confidence            7888888888888888874

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK04860 hypothetical protein; Provisional

Probab=87.31  E-value=0.36  Score=36.63  Aligned_cols=28  Identities=14%  Similarity=0.330  Sum_probs=23.2

Q ss_pred             cccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      .|. |++   ....+++|.++|+++++|.|++
T Consensus       121 ~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~  148 (160)
T PRK04860        121 RCK-CQE---HQLTVRRHNRVVRGEAVYRCRR  148 (160)
T ss_pred             EcC-CCC---eeCHHHHHHHHhcCCccEECCC
Confidence            476 887   6778899999999999998554

>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included

Probab=87.25  E-value=1.8  Score=36.65  Aligned_cols=41  Identities=22%  Similarity=0.369  Sum_probs=29.4

Q ss_pred             HhhcCCCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechh-hhhhhhc
Q 025404          193 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR  244 (253)
Q Consensus       193 ~~l~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~-~D~~~l~  244 (253)
                      ..+....+..++...+.+++..        .+-|   ||+|||+. ||+.+|.
T Consensus       214 ~~v~~~~~E~~lL~~f~~~i~~--------~dPD---ii~GyN~~~fD~~yl~  255 (325)
T PF03104_consen  214 VEVIYFDSEKELLEAFLDIIQE--------YDPD---IITGYNIDGFDLPYLI  255 (325)
T ss_dssp             TEEEEESSHHHHHHHHHHHHHH--------HS-S---EEEESSTTTTHHHHHH
T ss_pred             cEEEEECCHHHHHHHHHHHHHh--------cCCc---EEEEecccCCCHHHHH
Confidence            3344457888999999999842        2223   99999965 9999874

; InterPro: IPR006133 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known. However, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold [].; GO: 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 4AHC_A 3A2F_A 2JGU_A 4AIL_C 1NOY_A 1NOZ_B 3IAY_A 1WNS_A 3K5O_A ....

>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A

Probab=87.03  E-value=1  Score=34.06  Aligned_cols=21  Identities=19%  Similarity=0.151  Sum_probs=15.1

Q ss_pred             CCeEEEeec-hhhhhhhhcCCC
Q 025404          227 KARLLVGHG-LEHDLDSLRMNY  247 (253)
Q Consensus       227 ~~~~lv~h~-~~~D~~~l~~~~  247 (253)
                      +...+|+|| ..||+.+|+-..
T Consensus        56 ~~~~iv~yng~~FD~p~L~~~~   77 (164)
T PF13482_consen   56 EADNIVTYNGKNFDIPFLKRRA   77 (164)
T ss_dssp             TT--EEESSTTTTHHHHHHHHH
T ss_pred             cCCeEEEEeCcccCHHHHHHHH
Confidence            556899988 799999997543

...

>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only]

Probab=86.79  E-value=0.21  Score=37.83  Aligned_cols=45  Identities=24%  Similarity=0.397  Sum_probs=41.0

Q ss_pred             EEeeeccCCC--CcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHh
Q 025404          169 IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (253)
Q Consensus       169 ~~~~~v~P~~--~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~  213 (253)
                      .|++||+|..  .++++...++||++..|+.||-|..|++++..+|+
T Consensus        45 ~F~syVRP~~~P~Lt~~Ckslt~I~Q~~VD~apifs~v~E~f~r~L~   91 (210)
T COG5018          45 TFSSYVRPKKFPKLTKRCKSLTKITQKQVDEAPIFSMVFEDFIRKLN   91 (210)
T ss_pred             HHHHhcCcccCchHHHHHHHhhhhhhhhccccchHHHHHHHHHHHHH
Confidence            6889999984  37899999999999999999999999999999994

>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins

Probab=86.55  E-value=4.8  Score=31.53  Aligned_cols=35  Identities=23%  Similarity=0.538  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCC
Q 025404          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP  248 (253)
Q Consensus       202 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~  248 (253)
                      +.+.+.|..++.|            .+.+.|||++.+|+.+|.-.++
T Consensus        68 ~~~~~~L~~ll~d------------~~i~KVg~~~~~D~~~L~~~~~  102 (193)
T cd06146          68 EDWDRLLKRLFED------------PDVLKLGFGFKQDLKALSASYP  102 (193)
T ss_pred             HHHHHHHHHHhCC------------CCeeEEEechHHHHHHHHHhcC
Confidence            3445567888842            4557899999999999986543

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.

>PRK05755 DNA polymerase I; Provisional

Probab=86.33  E-value=2  Score=41.89  Aligned_cols=31  Identities=32%  Similarity=0.366  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       203 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      ++++.|.+++.+            ...++|+||+.||+.+|.-
T Consensus       357 ~~l~~l~~~L~d------------~~v~kV~HNakfDl~~L~~  387 (880)
T PRK05755        357 EVLAALKPLLED------------PAIKKVGQNLKYDLHVLAR  387 (880)
T ss_pred             HHHHHHHHHHhC------------CCCcEEEeccHhHHHHHHh
Confidence            678889999932            3456899999999999874

>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase

Probab=85.87  E-value=3.7  Score=32.58  Aligned_cols=37  Identities=11%  Similarity=0.050  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhcC
Q 025404          198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRM  245 (253)
Q Consensus       198 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~~  245 (253)
                      -.+-.++..++.+++.+-      .     -.+++|+| ..||+.+|.-
T Consensus        70 ~~~E~~lL~~f~~~i~~~------~-----Pd~i~gyN~~~FD~pyl~~  107 (204)
T cd05779          70 EPDEKALLQRFFEHIREV------K-----PHIIVTYNGDFFDWPFVEA  107 (204)
T ss_pred             CCCHHHHHHHHHHHHHHh------C-----CCEEEecCccccCHHHHHH
Confidence            468889999999999420      0     13999988 7899999853

The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.52  E-value=0.47  Score=36.99  Aligned_cols=88  Identities=18%  Similarity=0.354  Sum_probs=58.6

Q ss_pred             CCCccccc--ccccccCCHHHHHHhhhhcCCCCCccccccccccccCHHHHhhhh------------CC---CCCCCcCC
Q 025404           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL------------TG---PLSKAHCS   73 (253)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~------------~~---~~~C~~C~   73 (253)
                      ..+.|.|+  .|...|.....+..|..+    -....|..|.+.|++..-|..|+            ++   =|+|.   
T Consensus        76 ~~~~~~cqvagc~~~~d~lD~~E~hY~~----~h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~Cl---  148 (253)
T KOG4173|consen   76 RVPAFACQVAGCCQVFDALDDYEHHYHT----LHGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCL---  148 (253)
T ss_pred             ccccccccccchHHHHhhhhhHHHhhhh----cccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHH---
Confidence            44568885  477888877777766643    22238999999999999999998            11   13442   


Q ss_pred             cccccccccccccccCChHHHHHHH-HHccCCCCCCcccc
Q 025404           74 GIFSDRGCNLCMNIFDSPSSLIKHK-EACSLSAPVPFEKT  112 (253)
Q Consensus        74 ~~f~~~~C~~C~k~f~~~~~l~~H~-~~h~~~~~~~C~~~  112 (253)
                             -+.|+..|...-.-..|+ ++|.----|...+.
T Consensus       149 -------vEgCt~KFkT~r~RkdH~I~~Hk~Pa~frFdk~  181 (253)
T KOG4173|consen  149 -------VEGCTEKFKTSRDRKDHMIRMHKYPADFRFDKP  181 (253)
T ss_pred             -------HHhhhhhhhhhhhhhhHHHHhccCCcceeecCc
Confidence                   355888888887777886 45643333334444

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=85.34  E-value=0.52  Score=46.57  Aligned_cols=115  Identities=24%  Similarity=0.286  Sum_probs=73.4

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhcCCC------------------------CCcc-ccccccccccCHHHHhhhh--
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKISYHS------------------------VHQP-KCAVCQKLSKSFESLREHL--   63 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~------------------------~~~~-~C~~C~~~f~~~~~l~~H~--   63 (253)
                      ..|.|+|+.|+..|.....|..|||.. |.                        +.++ .|..|...++.+.+|..|+  
T Consensus       462 ~~kt~~cpkc~~~yk~a~~L~vhmRsk-hp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  462 FFKTLKCPKCNWHYKLAQTLGVHMRSK-HPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             ccccccCCccchhhhhHHHhhhccccc-ccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence            458899999999999999999999974 31                        1245 8899999999999998887  


Q ss_pred             -----C--------C------CCC-CCcC--------------CcccccccccccccccCChHHHHHHHHHc-cCCCCCC
Q 025404           64 -----T--------G------PLS-KAHC--------------SGIFSDRGCNLCMNIFDSPSSLIKHKEAC-SLSAPVP  108 (253)
Q Consensus        64 -----~--------~------~~~-C~~C--------------~~~f~~~~C~~C~k~f~~~~~l~~H~~~h-~~~~~~~  108 (253)
                           +        +      +.. |..|              .+.....+|..|+..-.-.-+|+.||..- +-..|--
T Consensus       541 ~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~  620 (1406)
T KOG1146|consen  541 DLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSL  620 (1406)
T ss_pred             HhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHH
Confidence                 0        0      011 2111              22223334999988877777888887532 2222222


Q ss_pred             ---ccccCccchhhhhhcccc
Q 025404          109 ---FEKTLSNAESQKKISGAI  126 (253)
Q Consensus       109 ---C~~~f~~~~~l~~h~~~~  126 (253)
                         |.-.+.....+..+...+
T Consensus       621 ~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  621 VLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             HhhhcchhhccccccCcCCCC
Confidence               444444444555554433

>PF15135 UPF0515: Uncharacterised protein UPF0515

Probab=85.23  E-value=0.33  Score=38.95  Aligned_cols=60  Identities=13%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             CCCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc--ccccccccccCHHHHhhhhCCCCCCCcCCccccc
Q 025404            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSD   78 (253)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~--~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~   78 (253)
                      -++.++.|-|..|+..+=.        +   ....+.  .|..|.+.|--...=+.--...|.|+.|+..|..
T Consensus       106 ip~~drqFaC~~Cd~~WwR--------r---vp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G  167 (278)
T PF15135_consen  106 IPSVDRQFACSSCDHMWWR--------R---VPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRG  167 (278)
T ss_pred             ccccceeeeccccchHHHh--------c---cCcccccccccccccccCCCccccccceeeeecccccccchh
Confidence            3456677778777643211        1   222233  6777776664433111111445666666666654

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=84.22  E-value=0.38  Score=38.41  Aligned_cols=42  Identities=33%  Similarity=0.555  Sum_probs=34.1

Q ss_pred             cccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404           16 KCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        16 ~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      .|-.|++.|.+..-|..|++.      +. +|.+|-|.+.+.-.|..|-
T Consensus        12 wcwycnrefddekiliqhqka------khfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA------KHFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             eeeecccccchhhhhhhhhhh------ccceeeeehhhhccCCCceeeh
Confidence            688999999999888888876      44 8999988887777777763

>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase

Probab=84.03  E-value=1.3  Score=35.90  Aligned_cols=39  Identities=31%  Similarity=0.435  Sum_probs=29.0

Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeech-hhhhhhhc
Q 025404          195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (253)
Q Consensus       195 l~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~  244 (253)
                      +....+..+....+.+++.+        -|-|   ||||||+ .||+.+|-
T Consensus        76 v~~~~~E~~LL~~f~~~i~~--------~DPD---iivG~Ni~~fdl~~L~  115 (234)
T cd05776          76 VRIFENERALLNFFLAKLQK--------IDPD---VLVGHDLEGFDLDVLL  115 (234)
T ss_pred             EEEeCCHHHHHHHHHHHHhh--------cCCC---EEEeeccCCCCHHHHH
Confidence            34456788899999999842        2223   9999998 89999873

The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are

>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases

Probab=84.02  E-value=11  Score=29.87  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhcC
Q 025404          197 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRM  245 (253)
Q Consensus       197 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~~  245 (253)
                      .-.+-.++..++.+++.             .-.+|||+| ..||+.+|.-
T Consensus        69 ~~~~E~~lL~~F~~~i~-------------~~~~iig~N~~~FDlpyl~~  105 (204)
T cd05783          69 FFDSEKELIREAFKIIS-------------EYPIVLTFNGDNFDLPYLYN  105 (204)
T ss_pred             ecCCHHHHHHHHHHHHh-------------cCCEEEEeCCCCcCHHHHHH
Confidence            34688999999999994             224999988 7899999853

The 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal proteins. B1 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B1displays thermostable polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family-B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Family-B DNA polymerases from thermophilic archaea are uniq

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.15  E-value=1.3  Score=41.18  Aligned_cols=29  Identities=21%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             ccccccccccCHHHHhhhh-CCCCCCCcCC
Q 025404           45 KCAVCQKLSKSFESLREHL-TGPLSKAHCS   73 (253)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-~~~~~C~~C~   73 (253)
                      .|..|...|.....|.+|+ ...|.|..|.
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~  213 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDHEFCHFCD  213 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccceeheeecC
Confidence            6777777777777777777 4455666664

>COG3364 Zn-ribbon containing protein [General function prediction only]

Probab=80.73  E-value=0.74  Score=31.61  Aligned_cols=25  Identities=36%  Similarity=0.741  Sum_probs=15.0

Q ss_pred             CCCCCcCCcccccc------cccccc-cccCC
Q 025404           66 PLSKAHCSGIFSDR------GCNLCM-NIFDS   90 (253)
Q Consensus        66 ~~~C~~C~~~f~~~------~C~~C~-k~f~~   90 (253)
                      |+.|..||..|..-      .|+.|| +.|.+
T Consensus         2 pH~CtrCG~vf~~g~~~il~GCp~CG~nkF~y   33 (112)
T COG3364           2 PHQCTRCGEVFDDGSEEILSGCPKCGCNKFLY   33 (112)
T ss_pred             CceecccccccccccHHHHccCccccchheEe
Confidence            45666666666552      377777 45554

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=80.16  E-value=3.2  Score=35.67  Aligned_cols=46  Identities=15%  Similarity=0.060  Sum_probs=37.5

Q ss_pred             ccccccccCChHHHHHHHHHccCC----CCC----------------------Ccc---ccCccchhhhhhcccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS----APV----------------------PFE---KTLSNAESQKKISGAI  126 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~----~~~----------------------~C~---~~f~~~~~l~~h~~~~  126 (253)
                      |-.|++.|.+...-..||..++|=    +.|                      -|.   +.|+.....+.|+...
T Consensus       169 CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K  243 (390)
T KOG2785|consen  169 CLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDK  243 (390)
T ss_pred             eeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhc
Confidence            999999999999999999988863    222                      188   8899999999999643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
1wlj_A	189	Human Isg20 Length = 189		8e-11

>pdb|1WLJ|A Chain A, Human Isg20 Length = 189

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 15/109 (13%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           + VAMDCEMVG G +    L AR  LV+    V++  +++P+  +T+YR  V+G+T + +
Sbjct: 6   EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM 64
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR 244
             A P    + +IL++L              K +L+VGH L+HD  +L+
Sbjct: 65  VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALK 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
1wlj_A	189	Interferon stimulated gene 20KDA; exoribonuclease,	1e-37
1w0h_A	204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	4e-06
1zbh_A	299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	6e-06
2xri_A	224	ERI1 exoribonuclease 3; hydrolase, metal binding;	1e-05
1zbu_A	349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-04
3cg7_A	308	CRN-4, cell death-related nuclease 4; hydrolase, a	2e-04
2p1j_A	186	POLIII, DNA polymerase III POLC-type; structural g	3e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	7e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	8e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-04

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Length = 189

 Score =  129 bits (326), Expect = 1e-37
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 15/121 (12%)

Query: 133 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTE 192
              + VAMDCEMVG G +    L AR  LV+    V++  +++P+  +T+YR  V+G+T 
Sbjct: 3   GSREVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTP 61

Query: 193 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML 252
           + +  A P    + +IL++L              K +L+VGH L+HD  +L+ +   + +
Sbjct: 62  QHMVGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTI 107

Query: 253 R 253
            
Sbjct: 108 Y 108

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Length = 204

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 18/107 (16%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++ + 
Sbjct: 38  VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMK 97

Query: 214 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR 253
             E      L       L+  G       L       R+ YP    +
Sbjct: 98  LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKK 138

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Length = 299

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 18/107 (16%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++++ 
Sbjct: 106 VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK 165

Query: 214 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR 253
             E      L       L+  G       L       R+ YP    +
Sbjct: 166 LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKK 206

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Length = 224

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           +  ++     I   FH YVQP +   +T +  E+TG+ +  +     L++V +++ E + 
Sbjct: 57  ILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMA 116

Query: 214 N 214
            
Sbjct: 117 K 117

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Length = 349

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL 212
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++++
Sbjct: 156 VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLM 214

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF---ESLREHL 63
          ++C  C + +    +   H   S+    +   C  C    K F   +++  H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC---FKEFTRKDNMTAHV 60

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 5/85 (5%)

Query: 14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHC 72
          + +C  C   +     L  HM  + H      +         S    R  L     K   
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME-GKEDA 77

Query: 73 SGIFSDRGCNLCMNIFDSPSSLIKH 97
            +     C  C + F+S   L  H
Sbjct: 78 QKVLK---CMYCGHSFESLQDLSVH 99

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Length = 308

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 161 LVDEDENVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN 214
           + ++     F+ YV+P L   +T    + TG+ +  I  A     V ++  + L  
Sbjct: 56  IREDIS---FNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDVVYEQFQQWLIT 108

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Length = 186

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 16/86 (18%)

Query: 164 EDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRL 221
           +   ++  +HT ++P   ++    E+TG+T+E ++N   ++EV  + L  L +       
Sbjct: 40  QGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFLED------- 92

Query: 222 MLDDGKARLLVGHGLEHDLDSLRMNY 247
                   ++V H    D   LR+  
Sbjct: 93  -------SIIVAHNANFDYRFLRLWI 111

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 20/90 (22%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TG--PLS 68
          HKC  C K F RKD L  HM+   H+  +P KC  C   +    SL +HL   +   P  
Sbjct: 9  HKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66

Query: 69 KAHCSGIFSDRGCNLCMNIFDSPSSLIKHK 98
                      C +C     + S L  H 
Sbjct: 67 ------------CQICPYASRNSSQLTVHL 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 14/87 (16%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKA 70
            C  C K F+   HL  H     HS  +P  C VC    K  + +  H+    G + K 
Sbjct: 8  VACEICGKIFRDVYHLNRHKLS--HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65

Query: 71 HCSGIFSDRGCNLCMNIFDSPSSLIKH 97
          +         C  C   F  P  L  H
Sbjct: 66 Y--------ICQSCGKGFSRPDHLNGH 84

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK 51
          + C +C K F R DHL  H+K   H+  +P KC V   
Sbjct: 13 YICQSCGKGFSRPDHLNGHIK-QVHTSERPHKCQVWVS 49

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF---ESLREH 62
           +C  C + F R DHL  H++   H+  +P  C +C    + F   +  + H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDIC---GRKFARSDERKRH 81

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 8/54 (14%)

Query: 15 HKCVACYKQFKRKDHLIEHMKI-SYHSVHQP-KCAVCQKLSKSFE---SLREHL 63
           +C  C    ++K  L  H +  +         C  C    K FE   S+  H 
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFC---GKRFEKPDSVAAHR 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.89
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.87
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.82
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.82
1wlj_A	189	Interferon stimulated gene 20KDA; exoribonuclease,	99.81
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.8
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.8
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.79
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.75
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.74
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.71
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.71
2gui_A	194	DNA polymerase III epsilon subunit; DNA polymerase	99.69
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.68
2p1j_A	186	POLIII, DNA polymerase III POLC-type; structural g	99.67
2igi_A	180	Oligoribonuclease; RNAse, exoribonuclease, exonucl	99.67
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.67
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.66
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.65
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.63
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.61
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.61
1w0h_A	204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	99.59
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.59
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.59
2gbz_A	194	Oligoribonuclease; ORN, deddh, structural genomics	99.58
1zbh_A	299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	99.57
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.57
3mxm_B	242	Three prime repair exonuclease 1; RNAse H-like fol	99.56
2xri_A	224	ERI1 exoribonuclease 3; hydrolase, metal binding;	99.55
3u3y_B	314	Three prime repair exonuclease 1; RNAse H fold, 3'	99.55
3tr8_A	186	Oligoribonuclease; transcription, hydrolase; 2.50A	99.55
1zbu_A	349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	99.54
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.54
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.54
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.53
1y97_A	238	Three prime repair exonuclease 2; TREX2, hydrolase	99.48
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.48
2f96_A	224	Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas	99.48
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.48
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.47
3cg7_A	308	CRN-4, cell death-related nuclease 4; hydrolase, a	99.46
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.45
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.43
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.43
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.43
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.41
3v9w_A	235	Ribonuclease T; DEDD nucleases family, EXO-nucleas	99.41
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.38
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.37
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.36
2qxf_A	482	Exodeoxyribonuclease I; alpha-beta domain, DNAQ su	99.36
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.36
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.35
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.35
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.34
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.34
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.33
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.32
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.32
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.31
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.31
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.29
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.29
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.27
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.27
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.26
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.25
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.25
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.25
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.24
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.24
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.23
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.22
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.21
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.2
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.2
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.19
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.18
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.18
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.17
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.17
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.15
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.14
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.13
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.1
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.1
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.08
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.06
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.99
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.98
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.97
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.95
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.94
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.92
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.91
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.91
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.9
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.9
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.89
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.89
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.88
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.87
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.86
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.85
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.85
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.84
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.8
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.78
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.73
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.72
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.72
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.72
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.71
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.71
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.71
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.7
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.69
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.69
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.68
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.68
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.68
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.68
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.68
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.68
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.68
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.68
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.68
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.67
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.66
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.66
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.66
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.65
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.65
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.65
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.65
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.64
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.64
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.64
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.64
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.64
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.64
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.64
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.63
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.63
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.63
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.63
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.63
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.63
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.63
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.62
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.62
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.61
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.61
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.61
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.6
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.6
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.59
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.59
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.58
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.58
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.57
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.56
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.54
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.54
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.54
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.52
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.51
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.49
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.49
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.48
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.47
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.46
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.46
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.46
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.45
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.45
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.45
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.44
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.44
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.44
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.43
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.43
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.43
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.43
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.43
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.42
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.42
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.42
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.42
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.42
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.42
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.42
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.42
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.42
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.42
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.41
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.41
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.41
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.41
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.41
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.41
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.41
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.41
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.4
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.4
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.4
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.4
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.39
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.39
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.39
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.39
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.39
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.39
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.38
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.38
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.38
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.38
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.37
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.37
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.36
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.36
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.36
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.36
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.36
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.35
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.35
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.35
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.35
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.34
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.34
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.32
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.32
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.32
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.32
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.3
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.29
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.29
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.29
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.26
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.26
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.58
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.25
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.56
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.23
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.23
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.22
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.21
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.18
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.17
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.41
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.07
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.02
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.0
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.99
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.99
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.98
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.98
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.95
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.95
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.95
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.95
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.91
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.9
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.89
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.89
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.07
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.86
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.86
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.85
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.84
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.76
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.94
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.73
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.73
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.7
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.7
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.69
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.67
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.64
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.62
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.7
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.46
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.46
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.29
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.75
4hec_A	190	Putative uncharacterized protein; ssgcid, structur	96.56
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.42
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.49
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.24
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.88
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.83
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.62
1x9m_A	698	DNA polymerase; DNA ploymerase, N-2-acetylaminoflu	93.95
2kfn_A	605	Klenow fragment of DNA polymerase I; complex (poly	93.88
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	90.83
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	88.72
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	87.88
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	87.43
1noy_A	388	Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas	86.82
1qht_A	775	Protein (DNA polymerase); archaea, hyperthermostab	86.17
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	85.31
1s5j_A	847	DNA polymerase I; replication, disulfide bonds, tr	84.03
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	82.52
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	82.46
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	82.25
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	80.38

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.89  E-value=3e-24  Score=167.82  Aligned_cols=137  Identities=25%  Similarity=0.426  Sum_probs=108.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccccc--
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG--   80 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~--   80 (253)
                      ..+++||.|+.|++.|.....|..|++.  |.++++ .|+.|++.|.+...|..|+     +++|.|+.|++.|....  
T Consensus        16 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   93 (190)
T 2i13_A           16 EPGEKPYACPECGKSFSRSDHLAEHQRT--HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANL   93 (190)
T ss_dssp             ---------------CCSSHHHHHGGGC--C---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             cCCCCCCcCCCCccccCCHHHHHHHHHH--cCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHH
Confidence            3578999999999999999999999999  999888 9999999999999999998     67899999999998653  


Q ss_pred             --------------ccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhccccccccccCCCceeeeecc
Q 025404           81 --------------CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCE  143 (253)
Q Consensus        81 --------------C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~~~~~~r~~~~~~~~~~dcE  143 (253)
                                    |+.|++.|.+...|..|+++|++++||.   |++.|.+...|..|+..+.+.        ..+.|+
T Consensus        94 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~--------~~~~C~  165 (190)
T 2i13_A           94 RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE--------KPYKCP  165 (190)
T ss_dssp             HHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCC--------CCEECT
T ss_pred             HHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCC--------CCeECC
Confidence                          9999999999999999999999999997   999999999999999776542        357899


Q ss_pred             cccCCCCCcccc
Q 025404          144 MVGGGSNGTLDL  155 (253)
Q Consensus       144 ~~g~~~~~~~~l  155 (253)
                      .||..+.....+
T Consensus       166 ~C~~~f~~~~~L  177 (190)
T 2i13_A          166 ECGKSFSRRDAL  177 (190)
T ss_dssp             TTCCEESSHHHH
T ss_pred             CCCCccCCHHHH
Confidence            999887777666

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.87  E-value=3.6e-23  Score=161.68  Aligned_cols=118  Identities=25%  Similarity=0.432  Sum_probs=106.6

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccccc---
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG---   80 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~---   80 (253)
                      .++++|.|+.|++.|.....|..|+++  |.++++ .|+.|++.|.+...|..|+     +++|.|+.|++.|....   
T Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  122 (190)
T 2i13_A           45 TGEKPYKCPECGKSFSDKKDLTRHQRT--HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR  122 (190)
T ss_dssp             ---CCEECTTTCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHH
T ss_pred             CCCCCccCCCcCchhCCHHHHHHHHHh--cCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHH
Confidence            467899999999999999999999999  888888 9999999999999999998     67999999999998753   


Q ss_pred             -------------ccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhccccccc
Q 025404           81 -------------CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDEK  129 (253)
Q Consensus        81 -------------C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~~~~~~  129 (253)
                                   |+.|++.|.+.+.|..|+++|++++||.   |++.|.+...|..|+..+.+.
T Consensus       123 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK  187 (190)
T ss_dssp             HHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC---
T ss_pred             HHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCC
Confidence                         9999999999999999999999999997   999999999999999877653

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.87  E-value=1.8e-22  Score=157.64  Aligned_cols=134  Identities=19%  Similarity=0.280  Sum_probs=116.8

Q ss_pred             CCCCCcccc--cccccccCCHHHHHHhhhhcCCCCCcc-cc--ccccccccCHHHHhhhh-----CCCCCCC--cCCccc
Q 025404            9 KRSTARHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KC--AVCQKLSKSFESLREHL-----TGPLSKA--HCSGIF   76 (253)
Q Consensus         9 ~~~~k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C--~~C~~~f~~~~~l~~H~-----~~~~~C~--~C~~~f   76 (253)
                      +.++++|.|  +.|++.|.....|..|+++  |+++++ .|  +.|++.|.+...|..|+     +++|.|.  .|++.|
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f   84 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCK--HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRF   84 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHH--HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEE
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHh--cCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCcc
Confidence            668999999  7899999999999999999  999988 99  88999999999999998     5789999  899999


Q ss_pred             cccc------------------c--cccccccCChHHHHHHHHHccCCCCCC-----ccccCccchhhhhhccccccccc
Q 025404           77 SDRG------------------C--NLCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKISGAIDEKRT  131 (253)
Q Consensus        77 ~~~~------------------C--~~C~k~f~~~~~l~~H~~~h~~~~~~~-----C~~~f~~~~~l~~h~~~~~~~r~  131 (253)
                      ....                  |  +.|++.|.+.+.|..|+++|++++||.     |++.|.+.+.|..|+..+.+   
T Consensus        85 ~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---  161 (190)
T 1tf6_A           85 TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---  161 (190)
T ss_dssp             SCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---
T ss_pred             CCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---
Confidence            7542                  8  899999999999999999999999995     78899999999999976653   


Q ss_pred             cCCCceeeeeccc---ccCCCCCcccc
Q 025404          132 CRGPKAVAMDCEM---VGGGSNGTLDL  155 (253)
Q Consensus       132 ~~~~~~~~~dcE~---~g~~~~~~~~l  155 (253)
                              +.|+.   |+..+.....+
T Consensus       162 --------~~C~~~~~C~~~f~~~~~l  180 (190)
T 1tf6_A          162 --------YPCKKDDSCSFVGKTWTLY  180 (190)
T ss_dssp             --------CCCCSTTTCCCCCSCHHHH
T ss_pred             --------CcCCCCCcCCCccccHHHH
Confidence                    56777   88776666555

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=9.9e-21  Score=137.30  Aligned_cols=111  Identities=20%  Similarity=0.276  Sum_probs=93.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~   87 (253)
                      ++++++|+|+.|++.|.....|..|+++  |.++++ .|+.|++.|.+...|..|+..... ..-.+   ...|+.|++.
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-~~~~~---~~~C~~C~~~   75 (124)
T 2dlq_A            2 SSGSSGVECPTCHKKFLSKYYLKVHNRK--HTGEKPFECPKCGKCYFRKENLLEHEARNCM-NRSEQ---VFTCSVCQET   75 (124)
T ss_dssp             CCCCSSCCCTTTCCCCSSHHHHHHHHHH--HSSCCSCBCTTTCCBCSSHHHHHHHHHHCCC-CSCCC---CEECSSSCCE
T ss_pred             CCCCCCCCCCCCCCcCCCHHHHHHHHHh--CCCCCCeECCCCCchhcCHHHHHHHHhhhhc-CCCCC---CeECCCCCCc
Confidence            4688999999999999999999999999  999888 999999999999999999721000 00001   1137788899


Q ss_pred             cCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhccc
Q 025404           88 FDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGA  125 (253)
Q Consensus        88 f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~~  125 (253)
                      |.+...|..|+++|++++||.   |++.|.+...|..|+..
T Consensus        76 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  116 (124)
T 2dlq_A           76 FRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK  116 (124)
T ss_dssp             ESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHH
Confidence            999999999999999999997   99999999999999863

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.82  E-value=5e-21  Score=140.86  Aligned_cols=86  Identities=20%  Similarity=0.314  Sum_probs=78.5

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNL   83 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~   83 (253)
                      .|++||.|+.|++.|.....|..|+++  |+++++ +|+.|++.|.+.+.|..|+     ++||.            |+.
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~------------C~~   83 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNI--HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ------------CLA   83 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHH--HHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEE------------ESS
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHH--cCCCCCeeCCccCeecccccchhhhccccCCCcccc------------CCC
Confidence            589999999999999999999999999  999999 9999999999999999998     45665            667


Q ss_pred             cccccCChHHHHHHHHHccCCCCCCc
Q 025404           84 CMNIFDSPSSLIKHKEACSLSAPVPF  109 (253)
Q Consensus        84 C~k~f~~~~~l~~H~~~h~~~~~~~C  109 (253)
                      ||+.|.+.+.|..|+++|++++|+.|
T Consensus        84 C~k~F~~~~~L~~H~~~hh~~~p~~~  109 (133)
T 2lt7_A           84 CGKSFINYQFMSSHIKSVHSQDPSGD  109 (133)
T ss_dssp             SCCEESSHHHHHHHHHHHTCCCTTSS
T ss_pred             CCCCcCCHHHHHHHhHHhcCCCCCCC
Confidence            88899999999999999999887653

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5

Probab=99.81  E-value=3.4e-20  Score=144.66  Aligned_cols=102  Identities=36%  Similarity=0.673  Sum_probs=89.7

Q ss_pred             CCceeeeecccccCCCCCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHh
Q 025404          134 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~  213 (253)
                      ..+++++|+||+|.......++ +.+.+++.+|+++++.+|+|..+|++++++++|||+++|+++|+|.+|+.+|.+++ 
T Consensus         4 ~~~~vviD~ETTGl~~~~~~~i-iei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l-   81 (189)
T 1wlj_A            4 SREVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLL-   81 (189)
T ss_dssp             --CEEEEEEEEEEETTTTEEEE-EEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH-
T ss_pred             CCeEEEEEeECcCcCCCCCceE-EEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHH-
Confidence            3468999999999765543334 66777778899999999999999999999999999999999999999999999999 


Q ss_pred             cCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCCC
Q 025404          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDH  250 (253)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~  250 (253)
                                   ++.+|||||+.||++||+..+|+.
T Consensus        82 -------------~~~~lV~hn~~fD~~~L~~~~~~~  105 (189)
T 1wlj_A           82 -------------KGKLVVGHDLKHDFQALKEDMSGY  105 (189)
T ss_dssp             -------------TTSEEEESSHHHHHHHTTCCCTTC
T ss_pred             -------------CCCEEEECCcHHHHHHHHHhCCCC
Confidence                         788999999999999999998864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.80  E-value=2.8e-20  Score=134.03  Aligned_cols=102  Identities=20%  Similarity=0.455  Sum_probs=91.9

Q ss_pred             CCCCcccccc--cccccCCHHHHHHhhhhcCCCCCcc-ccc--cccccccCHHHHhhhh-----CCCCCCCcCCcccccc
Q 025404           10 RSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDR   79 (253)
Q Consensus        10 ~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~   79 (253)
                      ++++||.|+.  |++.|.....|..|+++  |.++++ .|+  .|++.|.+...|..|+     +++|.           
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~-----------   68 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK--HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ-----------   68 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHH--HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEE-----------
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHh--hCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCcc-----------
Confidence            5789999986  99999999999999999  998888 999  7999999999999998     45665           


Q ss_pred             cccccccccCChHHHHHHHHHccCCCCCC-----ccccCccchhhhhhccc
Q 025404           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKISGA  125 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h~~~~~~~-----C~~~f~~~~~l~~h~~~  125 (253)
                       |+.|++.|.+...|..|+++|++++||.     |++.|.+...|..|++.
T Consensus        69 -C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           69 -CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             -CTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             -CCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence             5668888999999999999999999885     68999999999999854

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.80  E-value=6.7e-20  Score=143.01  Aligned_cols=115  Identities=18%  Similarity=0.277  Sum_probs=104.0

Q ss_pred             CCCcccc--cccccccCCHHHHHHhhhhcCCCCCcc-ccc--cccccccCHHHHhhhh-------CCCCCC--CcCCccc
Q 025404           11 STARHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-------TGPLSK--AHCSGIF   76 (253)
Q Consensus        11 ~~k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-------~~~~~C--~~C~~~f   76 (253)
                      +++||.|  +.|++.|.....|..|+++  |.++++ .|+  .|++.|.+...|..|+       .++|.|  +.|++.|
T Consensus        39 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f  116 (190)
T 1tf6_A           39 GEKPFPCKEEGCEKGFTSLHHLTRHSLT--HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF  116 (190)
T ss_dssp             CCCSSCCSSTTCCCCCSSHHHHHHHHTT--TTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEEC
T ss_pred             CCCCccCCCCCCChhhCCHHHHHHHHHH--ccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCcccc
Confidence            6789999  8899999999999999999  999998 999  8999999999999997       357999  8999999


Q ss_pred             cccc----------------ccc--cccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhccccc
Q 025404           77 SDRG----------------CNL--CMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAID  127 (253)
Q Consensus        77 ~~~~----------------C~~--C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~~~~  127 (253)
                      ....                |+.  |++.|.+.+.|..|+++|++-+...   |++.|.....|..|+..++
T Consensus       117 ~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~~~C~~~~~C~~~f~~~~~l~~H~~~h~  188 (190)
T 1tf6_A          117 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH  188 (190)
T ss_dssp             SSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCSCCCCSTTTCCCCCSCHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCCCcCCCCCcCCCccccHHHHHHHHHhhc
Confidence            8753                987  9999999999999999999944444   9999999999999997664

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=1e-19  Score=137.24  Aligned_cols=124  Identities=18%  Similarity=0.273  Sum_probs=91.1

Q ss_pred             CCcccccccccccCCHHHHHHhhh---hcCCCCCcc-cccc-----ccccccCHHHHhhhh-----CCCCCCCcCCcccc
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMK---ISYHSVHQP-KCAV-----CQKLSKSFESLREHL-----TGPLSKAHCSGIFS   77 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~---~~~H~~~~~-~C~~-----C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~   77 (253)
                      |.+|+|+.|++.|.+...|..|++   +  |.++++ .|+.     |++.|.+...|..|+     +++|.|+.      
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~--h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~------   72 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHI--HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTF------   72 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTS--SSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCS------
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhcc--CCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCC------
Confidence            568999999999999999999998   5  888887 7764     459999999999998     57888742      


Q ss_pred             cccccccccccCChHHHHHHHHHccCCCCCC-----ccccCccchhhhhhc-cccccccccCCCceeeeeccc--ccCCC
Q 025404           78 DRGCNLCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKIS-GAIDEKRTCRGPKAVAMDCEM--VGGGS  149 (253)
Q Consensus        78 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~-----C~~~f~~~~~l~~h~-~~~~~~r~~~~~~~~~~dcE~--~g~~~  149 (253)
                          +.|++.|.+...|..|+++|++++||.     |++.|.+.+.|..|+ ..+.+.        ..+.|+.  ||..+
T Consensus        73 ----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~--------~~~~C~~~~C~~~f  140 (155)
T 2gli_A           73 ----EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE--------KPYVCKLPGCTKRY  140 (155)
T ss_dssp             ----TTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSC--------CCEECCSTTTCCEE
T ss_pred             ----CCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCC--------CCeeCCCCCCcccc
Confidence                236667777777777777777777763     666777777777776 444321        3456666  77665


Q ss_pred             CCcccc
Q 025404          150 NGTLDL  155 (253)
Q Consensus       150 ~~~~~l  155 (253)
                      .....+
T Consensus       141 ~~~~~L  146 (155)
T 2gli_A          141 TDPSSL  146 (155)
T ss_dssp             SSHHHH
T ss_pred             CCHHHH
Confidence            555444

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.79  E-value=1.3e-19  Score=131.52  Aligned_cols=105  Identities=19%  Similarity=0.278  Sum_probs=89.8

Q ss_pred             CCCccccc--ccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccccccc
Q 025404           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (253)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~   82 (253)
                      ++++|.|+  .|++.|.....|..|+++  | ++++ .|+.|++.|.+...|..|+     +++|.|.          ++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----------~~   68 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHT--H-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT----------FE   68 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGG--G-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECC----------ST
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHH--c-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCC----------CC
Confidence            46899999  899999999999999999  8 6777 9999999999999999998     4556552          23


Q ss_pred             ccccccCChHHHHHHHHHccCCCCCC-----ccccCccchhhhhhcccccc
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKISGAIDE  128 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~~~~-----C~~~f~~~~~l~~h~~~~~~  128 (253)
                      .|++.|.+...|..|+++|++++||.     |++.|...+.|..|+..+.+
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             TCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            48899999999999999999999885     78899999999999977654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=1.5e-18  Score=122.37  Aligned_cols=91  Identities=24%  Similarity=0.521  Sum_probs=81.0

Q ss_pred             CCCCCCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccc
Q 025404            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSD   78 (253)
Q Consensus         5 ~~~~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~   78 (253)
                      ...++.++++|.|..|++.|.....|..|+++  |.++++ .|..|++.|.+...|..|+     +++|.          
T Consensus         8 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~----------   75 (106)
T 2ee8_A            8 GRLPSKTKKEFICKFCGRHFTKSYNLLIHERT--HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK----------   75 (106)
T ss_dssp             CCCCCCCCCCCBCSSSCCBCSSHHHHHHHHHH--HCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTS----------
T ss_pred             CcCCcCCCcCeECCCCCCccCCHHHHHHHHHH--cCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeE----------
Confidence            34466789999999999999999999999999  999888 9999999999999999998     44555          


Q ss_pred             ccccccccccCChHHHHHHHHHccCCCCCCc
Q 025404           79 RGCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (253)
Q Consensus        79 ~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~C  109 (253)
                        |..|++.|.+...|..|+++|++++||.+
T Consensus        76 --C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           76 --CQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             --CSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             --CCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence              56688889999999999999999999863

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.75  E-value=9.9e-19  Score=131.84  Aligned_cols=109  Identities=19%  Similarity=0.294  Sum_probs=91.6

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCc---------cccccccccccCHHHHhhhh-----CCCCCCCcCCcc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ---------PKCAVCQKLSKSFESLREHL-----TGPLSKAHCSGI   75 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~---------~~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~   75 (253)
                      ..+++|.|..|++.|.+...|..|++.+ |.+..         ..|..|++.|.+...|..|+     +++|.|..    
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~-H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----   95 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTME-HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF----   95 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTT-TSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC----
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhh-cCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc----
Confidence            3567899999999999999999999874 66654         26999999999999999998     56676532    


Q ss_pred             cccccccccccccCChHHHHHHHHHccCCCCCC-----ccccCccchhhhhhccccccc
Q 025404           76 FSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKISGAIDEK  129 (253)
Q Consensus        76 f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~-----C~~~f~~~~~l~~h~~~~~~~  129 (253)
                            +.|++.|.+...|..|+++|++++||.     |++.|.....|..|++.+.+.
T Consensus        96 ------~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~  148 (155)
T 2rpc_A           96 ------PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD  148 (155)
T ss_dssp             ------TTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred             ------CCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence                  228888899999999999999999885     678999999999999777653

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=2.9e-18  Score=118.66  Aligned_cols=86  Identities=33%  Similarity=0.571  Sum_probs=77.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~   82 (253)
                      +.+++||+|+.|++.|.....|..|++.  |.++++ .|..|++.|.+...|..|+     +++|.            |+
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~   68 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK------------CQ   68 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGG--CCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEE------------CS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHh--cCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCcc------------CC
Confidence            5688999999999999999999999999  999888 9999999999999999998     44554            66


Q ss_pred             ccccccCChHHHHHHHHHccCCCCCC
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSAPVP  108 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~~~~  108 (253)
                      .|++.|.+.+.|..|+++|+++++..
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           69 ICPYASRNSSQLTVHLRSHTGDSGPS   94 (96)
T ss_dssp             SSSCEESSHHHHHHHHTTCCSCCCCC
T ss_pred             CCCCccCCHHHHHHHHHHhcCCCCCC
Confidence            78889999999999999999987643

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.71  E-value=5.5e-18  Score=115.78  Aligned_cols=82  Identities=21%  Similarity=0.543  Sum_probs=70.6

Q ss_pred             CCCccccc--ccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccccccc
Q 025404           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (253)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~   82 (253)
                      |++||.|+  .|++.|.....|..|+++  |.++++ .|..|++.|.+...|..|+     +++|.            |+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~   66 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRI--HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA------------CD   66 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEE------------CT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHH--hCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCcc------------CC
Confidence            57899998  699999999999999999  998888 9999999999999999998     45665            56


Q ss_pred             ccccccCChHHHHHHHHHccCCCC
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      .|++.|.+.+.|..|+++|+++++
T Consensus        67 ~C~~~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           67 ICGRKFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             TTCCEESSHHHHHHHHGGGGC---
T ss_pred             CCCchhCCHHHHHHHHHHhcccCC
Confidence            688889999999999999998763

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=2e-17  Score=116.91  Aligned_cols=92  Identities=21%  Similarity=0.296  Sum_probs=79.5

Q ss_pred             CCCCCCCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh----CCCCCCCcCCccccc
Q 025404            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL----TGPLSKAHCSGIFSD   78 (253)
Q Consensus         4 ~~~~~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~----~~~~~C~~C~~~f~~   78 (253)
                      +.....++++||+|+.|++.|.....|..|+++  |.  ++ .|..|++.|.....|..|+    +++|.          
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--H~--~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~----------   71 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERL--CR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLT----------   71 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHH--HH--HSBCCTTTCCCBSSHHHHHHHHHHCSTGGGE----------
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHH--CC--CCccCCCCCCccCCHHHHHHHHHcCCCCCcc----------
Confidence            344446689999999999999999999999999  73  56 9999999999999999998    33443          


Q ss_pred             ccccccccccCChHHHHHHHH-HccCCCCCCccc
Q 025404           79 RGCNLCMNIFDSPSSLIKHKE-ACSLSAPVPFEK  111 (253)
Q Consensus        79 ~~C~~C~k~f~~~~~l~~H~~-~h~~~~~~~C~~  111 (253)
                        |+.|++.|.+...|..|++ +|.+++||+|..
T Consensus        72 --C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           72 --CLECMRTFKSSFSIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             --EGGGTEECSSHHHHHHHHHHTSCCCCCCCCCC
T ss_pred             --CccccchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence              7789999999999999997 999999998653

>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*

Probab=99.69  E-value=1.4e-17  Score=130.33  Aligned_cols=95  Identities=21%  Similarity=0.422  Sum_probs=82.0

Q ss_pred             CceeeeecccccCCC-------CCcccccceeeeecCCCCe---EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHH
Q 025404          135 PKAVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENV---IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEV  204 (253)
Q Consensus       135 ~~~~~~dcE~~g~~~-------~~~~~ll~~v~iv~~~~~~---~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v  204 (253)
                      .+++++|+||+|...       +.++++ +.+.+.  ++.+   .++.+|+|..+++++.+++||||+++|.+++++.+|
T Consensus         9 ~~~vviD~ETTGl~~~~~~~~~~~Iiei-g~v~~~--~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v   85 (194)
T 2gui_A            9 TRQIVLDTETTGMNQIGAHYEGHKIIEI-GAVEVV--NRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEV   85 (194)
T ss_dssp             CEEEEEEEEESCCCSSSSTTTTCCEEEE-EEEEEE--TTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHH
T ss_pred             CCEEEEEeeCCCCCCcccCCCCCEEEEE-EEEEEE--CCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHHHH
Confidence            468999999999765       455565 666663  4544   489999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       205 ~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                      +.++.+++              ++.+|||||+.||+.||+..
T Consensus        86 ~~~~~~~l--------------~~~~lv~hn~~fD~~~L~~~  113 (194)
T 2gui_A           86 ADEFMDYI--------------RGAELVIHNAAFDIGFMDYE  113 (194)
T ss_dssp             HHHHHHHH--------------TTSEEEETTHHHHHHHHHHH
T ss_pred             HHHHHHHH--------------CCCeEEEEchHHhHHHHHHH
Confidence            99999999              78899999999999999853

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=5.9e-17  Score=111.78  Aligned_cols=82  Identities=28%  Similarity=0.453  Sum_probs=73.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----C--CCCCCCcCCccccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----T--GPLSKAHCSGIFSDRG   80 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~--~~~~C~~C~~~f~~~~   80 (253)
                      ++++++|.|+.|++.|.....|..|+++  |.++++ .|+.|++.|.+...|..|+     +  ++|.            
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~------------   67 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLS--HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI------------   67 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHH--SCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBC------------
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHh--cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceE------------
Confidence            5789999999999999999999999999  999998 9999999999999999998     2  4555            


Q ss_pred             ccccccccCChHHHHHHHH-HccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKE-ACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~-~h~~~  104 (253)
                      |+.|++.|.+...|..|++ .|.++
T Consensus        68 C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           68 CQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CCCccchhCCHHHHHHHHHHhcCCC
Confidence            5667888999999999996 78765

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}

Probab=99.67  E-value=4.4e-17  Score=126.67  Aligned_cols=95  Identities=24%  Similarity=0.446  Sum_probs=81.3

Q ss_pred             CCceeeeecccccCCC--CCcccccceeeeecCCCCe--EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHH
Q 025404          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~  209 (253)
                      ..+++++|+||+|...  +.++++ +.+.+.  +|++  .++.+|+|..+++++.++++|||++++++++++.+|+.++.
T Consensus        11 ~~~~v~iD~ETTGl~~~~~~IieI-g~v~~~--~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~   87 (186)
T 2p1j_A           11 DATFVVLDFETTGLDPQVDEIIEI-GAVKIQ--GGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFL   87 (186)
T ss_dssp             --CEEEEEEEESCSCTTTCCEEEE-EEEEEE--TTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHH
Confidence            4568999999999753  455565 666653  5666  48999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      +++              ++.+|||||+.||+.||+.
T Consensus        88 ~~l--------------~~~~lv~hn~~fD~~~L~~  109 (186)
T 2p1j_A           88 GFL--------------EDSIIVAHNANFDYRFLRL  109 (186)
T ss_dssp             HHS--------------SSCEEEETTHHHHHHHHHH
T ss_pred             HHH--------------CCCEEEEECcHHHHHHHHH
Confidence            999              7789999999999999974

>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A

Probab=99.67  E-value=2.1e-17  Score=127.88  Aligned_cols=104  Identities=19%  Similarity=0.214  Sum_probs=79.9

Q ss_pred             CceeeeecccccCCC--CCcccccceeeeecCCCCeE---EeeeccCCCCcccc----e---eeeccCCHHhhcCCCCHH
Q 025404          135 PKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI---FHTYVQPQLPVTNY----R---YEVTGLTEEDIKNAMPLK  202 (253)
Q Consensus       135 ~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~~---~~~~v~P~~~i~~~----~---~~~~Git~~~l~~~~~~~  202 (253)
                      .+++++|+||+|...  +.++++ +.+ +++.++.++   ++.+|+|..+++++    .   ..++|||++++++++++.
T Consensus         5 ~~~v~iD~ETTGl~~~~~~IieI-g~v-~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~~   82 (180)
T 2igi_A            5 NNLIWIDLEMTGLDPERDRIIEI-ATL-VTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDR   82 (180)
T ss_dssp             GCEEEEEEEESSSCTTTCCEEEE-EEE-EECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHH
T ss_pred             CcEEEEEeeCCCCCCCCCceEEE-EEE-EEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCHH
Confidence            458999999999764  456666 666 556566663   89999999877654    3   556999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCC
Q 025404          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP  248 (253)
Q Consensus       203 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~  248 (253)
                      +|+.++.+++....      +  +...+|||||+.||+.||+...+
T Consensus        83 ~v~~~~~~~l~~~~------~--~~~~~lv~hn~~fD~~fL~~~~~  120 (180)
T 2igi_A           83 EAELATLEFLKQWV------P--AGKSPICGNSIGQDRRFLFKYMP  120 (180)
T ss_dssp             HHHHHHHHHHTTTS------C--TTTSCEEESSHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHhC------C--CCCceEEecCHHHHHHHHHHHHH
Confidence            99999999992100      0  01369999999999999986543

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.67  E-value=1.8e-17  Score=121.81  Aligned_cols=102  Identities=15%  Similarity=0.164  Sum_probs=84.3

Q ss_pred             HhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCC
Q 025404           32 EHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        32 ~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      .|.++  |.|+++ +|++|++.|.+.++|..|+     ++||.            |+.|+++|.+.+.|..|+++|++++
T Consensus        12 h~~~~--h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~------------C~~C~k~F~~~~~L~~H~~~H~~~k   77 (133)
T 2lt7_A           12 HYELI--VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYP------------CRYCEKVFPLAEYRTKHEIHHTGER   77 (133)
T ss_dssp             EEEEE--ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEE------------CSSSSCEESSHHHHHHHHHHHHTCC
T ss_pred             hceee--cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCee------------CCccCeecccccchhhhccccCCCc
Confidence            35566  899999 9999999999999999998     56665            5667888999999999999999999


Q ss_pred             CCC---ccccCccchhhhhhccccccccccCCCceeeeecccccCCC
Q 025404          106 PVP---FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGS  149 (253)
Q Consensus       106 ~~~---C~~~f~~~~~l~~h~~~~~~~r~~~~~~~~~~dcE~~g~~~  149 (253)
                      ||.   |++.|.+.+.|..|+..+++.....  ....+.|+.|+..+
T Consensus        78 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~--~~k~~~C~~C~k~~  122 (133)
T 2lt7_A           78 RYQCLACGKSFINYQFMSSHIKSVHSQDPSG--DSKLYRLHPCRSLQ  122 (133)
T ss_dssp             CEEESSSCCEESSHHHHHHHHHHHTCCCTTS--SSCCEEECCCCSSC
T ss_pred             cccCCCCCCCcCCHHHHHHHhHHhcCCCCCC--CCCCeecCCCCchh
Confidence            997   9999999999999998776543222  23457788888643

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.66  E-value=4.5e-17  Score=109.10  Aligned_cols=76  Identities=32%  Similarity=0.605  Sum_probs=68.7

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccc
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNI   87 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~   87 (253)
                      ||.|+.|++.|.....|..|+++  |.++++ .|..|++.|.+...|..|+     +++|.            |+.|++.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~   66 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLI--HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK------------CQVCGKA   66 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH--HHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEE------------CTTTSCE
T ss_pred             CccCCCCcccccCchhHHHHHHH--cCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCc------------CCCcchh
Confidence            68999999999999999999999  998888 9999999999999999998     45665            5668888


Q ss_pred             cCChHHHHHHHHHccC
Q 025404           88 FDSPSSLIKHKEACSL  103 (253)
Q Consensus        88 f~~~~~l~~H~~~h~~  103 (253)
                      |.+.+.|..|+++|+|
T Consensus        67 f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           67 FSQSSNLITHSRKHTG   82 (82)
T ss_dssp             ESSHHHHHHHHHHHC-
T ss_pred             hCChHHHHHHHHhhCC
Confidence            9999999999999975

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.65  E-value=1.5e-16  Score=115.20  Aligned_cols=85  Identities=24%  Similarity=0.391  Sum_probs=72.3

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc--ccccccCHHHHhhhh-----CCCCCCCcCCccccccccc
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~   82 (253)
                      ++++|.|+.|++.|.....|..|+++  |.++++ .|..  |++.|.+...|..|+     +++|.|+          +.
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----------~~   98 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLV--HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP----------FD   98 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGG--TSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCC----------ST
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECC----------CC
Confidence            67899999999999999999999999  999998 9975  999999999999998     5677763          24


Q ss_pred             ccccccCChHHHHHHHHHccCCCCC
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSAPV  107 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~~~  107 (253)
                      .|++.|.+.+.|..|+++|++++++
T Consensus        99 ~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           99 GCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             TCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CCCCccCCHHHHHHHHHHHcccccC
Confidence            5888999999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.63  E-value=3.5e-16  Score=117.63  Aligned_cols=107  Identities=26%  Similarity=0.426  Sum_probs=90.2

Q ss_pred             CCCCCcccccc-----cccccCCHHHHHHhhhhcCCCCCcc-cccc--ccccccCHHHHhhhh-----CCCCCCCcCCcc
Q 025404            9 KRSTARHKCVA-----CYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGI   75 (253)
Q Consensus         9 ~~~~k~~~C~~-----C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~~~   75 (253)
                      ..+++||.|+.     |++.|.....|..|+++  |+++++ .|..  |++.|.+...|..|+     +++|.|+.+   
T Consensus        29 h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~---  103 (155)
T 2gli_A           29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR--HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHE---  103 (155)
T ss_dssp             SSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHH--HHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCST---
T ss_pred             CCCCcceeCCCCCccchhhhhhhHHHHHHHHHh--cCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCC---
Confidence            34788999874     34999999999999999  999888 9985  999999999999998     456655321   


Q ss_pred             cccccccccccccCChHHHHHHH-HHccCCCCCC-----ccccCccchhhhhhccccc
Q 025404           76 FSDRGCNLCMNIFDSPSSLIKHK-EACSLSAPVP-----FEKTLSNAESQKKISGAID  127 (253)
Q Consensus        76 f~~~~C~~C~k~f~~~~~l~~H~-~~h~~~~~~~-----C~~~f~~~~~l~~h~~~~~  127 (253)
                             .|++.|.+.+.|..|+ ++|++++||.     |++.|.+.+.|..|+..++
T Consensus       104 -------~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          104 -------GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             -------TCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             -------CCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence                   1888899999999999 8999999984     7889999999999986554

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=1.2e-15  Score=106.06  Aligned_cols=86  Identities=23%  Similarity=0.473  Sum_probs=74.2

Q ss_pred             CCCCCCCCCCcccccc--cccccCCHHHHHHhhhhcCCCCCcc-ccc--cccccccCHHHHhhhh-----CCCCCCCcCC
Q 025404            4 EAELPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCS   73 (253)
Q Consensus         4 ~~~~~~~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~   73 (253)
                      ...++...+++|.|..  |++.|.....|..|++.  |.++++ .|.  .|++.|.+...|..|+     +++|.     
T Consensus         5 ~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~-----   77 (100)
T 2ebt_A            5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT--HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ-----   77 (100)
T ss_dssp             CCCCCCCSCCCEECCSSSCCCEESCHHHHHHHHHH--HSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCB-----
T ss_pred             CCCcccccCcceEcCCCCCCCcccCHHHHHHHHHH--hCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeE-----
Confidence            3444566789999986  99999999999999999  998888 996  6999999999999998     45665     


Q ss_pred             cccccccccccccccCChHHHHHHHHHccC
Q 025404           74 GIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        74 ~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                             |+.|++.|.+.+.|..|+++|++
T Consensus        78 -------C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           78 -------CGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             -------CSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             -------CCCCcCccCCHHHHHHHHHHhCC
Confidence                   56677888999999999999974

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=5.2e-16  Score=110.04  Aligned_cols=81  Identities=31%  Similarity=0.550  Sum_probs=72.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~   82 (253)
                      .++++||.| .|++.|.....|..|++.  |.++++ .|..|++.|.+...|..|+     +++|.            |+
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~   69 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSM--HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE------------CN   69 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHH--HSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEE------------CS
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHH--cCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCee------------CC
Confidence            468999999 999999999999999999  998888 9999999999999999998     33444            67


Q ss_pred             ccccccCChHHHHHHHHHccCC
Q 025404           83 LCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      .|++.|.+...|..|+++|+..
T Consensus        70 ~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           70 ICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             SSCCEESCHHHHHHHHHHHHHH
T ss_pred             CCcchhcCHHHHHHHHHHcccc
Confidence            7888999999999999998643

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=6.1e-16  Score=110.56  Aligned_cols=87  Identities=21%  Similarity=0.214  Sum_probs=71.6

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc--ccccccccc--cCHHHHhhhh-----CCCCCCCcCCccccccc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLS--KSFESLREHL-----TGPLSKAHCSGIFSDRG   80 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~--~C~~C~~~f--~~~~~l~~H~-----~~~~~C~~C~~~f~~~~   80 (253)
                      ++++||+|+.|++.|.....|..|++++.|.+.++  .|..|++.|  .....|..|+     +++|.            
T Consensus        15 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~------------   82 (115)
T 2dmi_A           15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK------------   82 (115)
T ss_dssp             CCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB------------
T ss_pred             CCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE------------
Confidence            57899999999999999999999998733445554  699999999  8999999998     44554            


Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~  108 (253)
                      |+.|++.|.+.+.|..|+++|+.....+
T Consensus        83 C~~C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCcccCC
Confidence            5668888999999999999988765544

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5

Probab=99.59  E-value=7.9e-16  Score=121.33  Aligned_cols=104  Identities=17%  Similarity=0.291  Sum_probs=81.7

Q ss_pred             CCceeeeecccccCCC------CCcccccceeeeecCCCCeE--EeeeccCCC--CcccceeeeccCCHHhhcCCCCHHH
Q 025404          134 GPKAVAMDCEMVGGGS------NGTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  203 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~~------~~~~~ll~~v~iv~~~~~~~--~~~~v~P~~--~i~~~~~~~~Git~~~l~~~~~~~~  203 (253)
                      ...++++|+||+|...      +.++++ +.+.+-..+|++.  ++.+|+|..  +++++.+++||||+++|+++++|.+
T Consensus         9 ~~~~vviD~ETTGl~~~~~~~~~~Iiei-gav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~   87 (204)
T 1w0h_A            9 YDYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ   87 (204)
T ss_dssp             SSEEEECCCEECCCTTCCTTSCCCEEEE-EEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred             cCEEEEEEEecCCcCCCCCCCCCcEEEE-EEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHH
Confidence            3468999999999764      455555 5555432367774  999999998  8999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhh-hhcC
Q 025404          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLRM  245 (253)
Q Consensus       204 v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~-~l~~  245 (253)
                      |+.++.+++.+..       ....+.+|||||+.||++ ||+.
T Consensus        88 v~~~~~~~l~~~~-------~~~~~~~lv~hn~~fD~~~~L~~  123 (204)
T 1w0h_A           88 VLKKVIDWMKLKE-------LGTKYKYSLLTDGSWDMSKFLNI  123 (204)
T ss_dssp             HHHHHHHHHHHTT-------BTTTBCEEEEESSTTTTHHHHHH
T ss_pred             HHHHHHHHHHhcC-------CCCCCcEEEEEECcchHHHHHHH
Confidence            9999999994211       001234799999999997 9963

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.59  E-value=4.2e-16  Score=97.88  Aligned_cols=50  Identities=24%  Similarity=0.443  Sum_probs=39.0

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhh
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (253)
                      .||||+|+.|++.|...+.|..|+++  |++++| .|++||+.|.+.++|..|
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~--Ht~ekp~~C~~C~k~F~~~~~L~~H   51 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRA--HLGYRPRSCPECGKCFRDQSEVNRH   51 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHH--HHTCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHH--hCCCcCeECCCCCCCcCCHHHHHHH
Confidence            37999999999999999999999999  999877 665555555444444444

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.59  E-value=7.5e-16  Score=110.54  Aligned_cols=79  Identities=25%  Similarity=0.537  Sum_probs=71.8

Q ss_pred             CCCccccc--ccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccccccccc
Q 025404           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (253)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~   82 (253)
                      +++||.|+  .|++.|.....|..|+++  |.++++ .|+.|++.|.+...|..|+     +++|.|.          |+
T Consensus        33 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----------~~  100 (119)
T 2jp9_A           33 GEKPYQCDFKDCERRFSRSDQLKRHQRR--HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCR----------WP  100 (119)
T ss_dssp             TTCCEECCSTTCCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECC----------ST
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHH--cCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCC----------CC
Confidence            57899999  799999999999999999  999988 9999999999999999998     5677762          47


Q ss_pred             ccccccCChHHHHHHHHHc
Q 025404           83 LCMNIFDSPSSLIKHKEAC  101 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h  101 (253)
                      .|++.|.+.+.|..|+++|
T Consensus       101 ~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A          101 SCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             TCCCEESSHHHHHHHHHTC
T ss_pred             CCccccCCHHHHHHHHhcC
Confidence            7899999999999999987

>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}

Probab=99.58  E-value=4.6e-16  Score=121.71  Aligned_cols=101  Identities=15%  Similarity=0.254  Sum_probs=79.0

Q ss_pred             CCCceeeeecccccCCC--CCcccccceeeeecCCCCe---EEeeeccCCCCc----ccceeee---ccCCHHhhcCCCC
Q 025404          133 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV---IFHTYVQPQLPV----TNYRYEV---TGLTEEDIKNAMP  200 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~---~~~~~v~P~~~i----~~~~~~~---~Git~~~l~~~~~  200 (253)
                      ...+++++|+||+|...  +.++++ +.+. .+.+.++   .++.+|+|..++    +++..++   +|||++++.++++
T Consensus         7 ~~~~~vviD~ETTGl~p~~d~IieI-gav~-~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~   84 (194)
T 2gbz_A            7 GNDRLIWIDLEMTGLDTDRDSIIEI-ATIV-TDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT   84 (194)
T ss_dssp             -CCEEEEEEEEESCSCTTTCCEEEE-EEEE-EETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC
T ss_pred             CCCCEEEEEeECCCCCCCCCccEEE-EEEE-EcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC
Confidence            34568999999999763  456666 6555 4444433   378899998776    5555555   9999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCCCeE------EEeechhhhhhhhcCCCCC
Q 025404          201 LKEVKDKILEILNNGESTGRLMLDDGKARL------LVGHGLEHDLDSLRMNYPD  249 (253)
Q Consensus       201 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~------lv~h~~~~D~~~l~~~~~~  249 (253)
                      +.+|+.++.+++              ++.+      |||||+.||+.||+...++
T Consensus        85 ~~ev~~~~~~~l--------------~~~~~~~~~~lvghn~~FD~~fL~~~~~~  125 (194)
T 2gbz_A           85 HAQAEAQTVAFL--------------GEWIRAGASPMCGNSICQDRRFLHRQMSR  125 (194)
T ss_dssp             HHHHHHHHHHHH--------------TTTCCTTSSCEEESSHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHH--------------HHhCCCCCceEEecCHHHhHHHHHHHHHH
Confidence            999999999999              5555      9999999999999876543

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}

Probab=99.57  E-value=1.1e-15  Score=127.29  Aligned_cols=104  Identities=17%  Similarity=0.314  Sum_probs=83.6

Q ss_pred             CCceeeeecccccCC------CCCcccccceeeeecCCCCe--EEeeeccCCC--CcccceeeeccCCHHhhcCCCCHHH
Q 025404          134 GPKAVAMDCEMVGGG------SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  203 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~------~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~--~i~~~~~~~~Git~~~l~~~~~~~~  203 (253)
                      ...++++|+||+|..      .+.++++ +.+.+...++++  .|+.+|+|..  +|+++.+++||||+++|+++++|.+
T Consensus        77 ~~~~vviD~ETTGl~~~~~~~~~~IIeI-gaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~e  155 (299)
T 1zbh_A           77 YDYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ  155 (299)
T ss_dssp             CSEEEEECCEECCCTTCCTTCCCCEEEE-EEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred             CceEEEEEeecccCCCCCCCCCCceEEE-EEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHH
Confidence            456899999999974      3456666 666665445777  4999999998  8999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhh-hhcC
Q 025404          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLRM  245 (253)
Q Consensus       204 v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~-~l~~  245 (253)
                      |+.+|.+++.+...       .+.+.+|||||+.||+. ||+.
T Consensus       156 vl~~f~~~l~~~~~-------~~~~~~lVahn~~fD~~~fL~~  191 (299)
T 1zbh_A          156 VLKKVIDLMKLKEL-------GTKYKYSLLTDGSWDMSKFLNI  191 (299)
T ss_dssp             HHHHHHHHHHHTTB-------TTTBCEEEEESSSHHHHTHHHH
T ss_pred             HHHHHHHHHhhccc-------CCCCcEEEEEeCHHHHHHHHHH
Confidence            99999999932100       00125999999999999 9975

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.57  E-value=2e-16  Score=107.67  Aligned_cols=81  Identities=17%  Similarity=0.316  Sum_probs=69.8

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccccCC
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDS   90 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~f~~   90 (253)
                      ++||.|+.|++.|.....|..|+++  |+++++ .|+.|++.|.+.+.|..|+....     +.   ...|+.|++.|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~-----~~---~~~c~~C~~~f~~   70 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDICGRKFARSDERKRHRDIQH-----IL---PILEDKVEELLSK   70 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH--HHCCCCEECTTTCCEESSHHHHHHHHHHHT-----HH---HHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHH--cCCCCCccCCCCCCccCCHHHHHHHHHHhC-----CC---cchHHHHHHHHHH
Confidence            6899999999999999999999999  999999 99999999999999999982111     01   1138889999999


Q ss_pred             hHHHHHHHHHcc
Q 025404           91 PSSLIKHKEACS  102 (253)
Q Consensus        91 ~~~l~~H~~~h~  102 (253)
                      ...|..|++.++
T Consensus        71 ~~~L~~H~~~~h   82 (88)
T 1llm_C           71 NYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHH
Confidence            999999998765

>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A

Probab=99.56  E-value=1.1e-15  Score=123.48  Aligned_cols=102  Identities=16%  Similarity=0.179  Sum_probs=84.3

Q ss_pred             CCceeeeecccccCC--CCCcccccceeeeecCC--------C---------Ce--EEeeeccCCCCcccceeeeccCCH
Q 025404          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDED--------E---------NV--IFHTYVQPQLPVTNYRYEVTGLTE  192 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~--------~---------~~--~~~~~v~P~~~i~~~~~~~~Git~  192 (253)
                      ...++++|+||+|..  .+.++++ +.+.+.+..        +         ++  .++.+|+|..+|++..+++||||+
T Consensus        11 ~~~~vv~D~ETTGl~~~~d~IiEI-gav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~   89 (242)
T 3mxm_B           11 MQTLIFLDLEATGLPSSRPEVTEL-CLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK   89 (242)
T ss_dssp             CSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred             cceEEEEEeecCCCCCCCCeeEEE-EEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCH
Confidence            345899999999975  5677777 777775431        1         33  789999999999999999999999


Q ss_pred             HhhcCC--CCHH-HHHHHHHHHHhcCCCCCcccccCCCC----eEEEeech-hhhhhhhcCCCCCC
Q 025404          193 EDIKNA--MPLK-EVKDKILEILNNGESTGRLMLDDGKA----RLLVGHGL-EHDLDSLRMNYPDH  250 (253)
Q Consensus       193 ~~l~~~--~~~~-~v~~~l~~~~~~~~~~~~~~~~~~~~----~~lv~h~~-~~D~~~l~~~~~~~  250 (253)
                      ++|.++  |+|. +|+.+|.+++              ++    .+|||||+ .||+.||+....+.
T Consensus        90 ~~l~~~g~p~~~~ev~~~~~~fl--------------~~~~~~~~lVaHNav~FD~~fL~~~~~r~  141 (242)
T 3mxm_B           90 AELEVQGRQRFDDNLAILLRAFL--------------QRQPQPCCLVAHNGDRYDFPLLQTELARL  141 (242)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHH--------------HTSCSSEEEEETTTTTTHHHHHHHHHHTS
T ss_pred             HHHHhcCCCchhHHHHHHHHHHH--------------hcCCCCCEEEEcCChHhhHHHHHHHHHHc
Confidence            999998  8996 9999999999              45    89999995 99999998654433

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}

Probab=99.55  E-value=1.5e-15  Score=121.49  Aligned_cols=95  Identities=21%  Similarity=0.350  Sum_probs=80.9

Q ss_pred             CceeeeecccccCCCC----CcccccceeeeecCCCCe--EEeeeccCCC--CcccceeeeccCCHHhhcCCCCHHHHHH
Q 025404          135 PKAVAMDCEMVGGGSN----GTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (253)
Q Consensus       135 ~~~~~~dcE~~g~~~~----~~~~ll~~v~iv~~~~~~--~~~~~v~P~~--~i~~~~~~~~Git~~~l~~~~~~~~v~~  206 (253)
                      ..++++|+||+|....    .++++ +.+.+.+..+++  .++.+|+|..  +|+++.++++|||+++|++++++.+|++
T Consensus        31 ~~~vviD~ETTGl~~~~d~~~IieI-gav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~  109 (224)
T 2xri_A           31 HYFLVLDFEATCDKPQIHPQEIIEF-PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLE  109 (224)
T ss_dssp             SEEEEECCEECCCC-CCSSCCEEEE-EEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHH
T ss_pred             CeEEEEEEEcCCCCCCCCCcceEEE-EEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHH
Confidence            4689999999997643    56666 666665444566  4999999997  8999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCeEEEeech--------hhhhhh-hc
Q 025404          207 KILEILNNGESTGRLMLDDGKARLLVGHGL--------EHDLDS-LR  244 (253)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~--------~~D~~~-l~  244 (253)
                      ++.+++              ++.+|||||+        .||++| |+
T Consensus       110 ~f~~~l--------------~~~~lv~hn~~~~~~t~g~fD~~fll~  142 (224)
T 2xri_A          110 RVDEWM--------------AKEGLLDPNVKSIFVTCGDWDLKVMLP  142 (224)
T ss_dssp             HHHHHH--------------HHTTTTSTTSCEEEEESSSHHHHTHHH
T ss_pred             HHHHHH--------------hhcccccCCCceEEEEeChhhHHHHHH
Confidence            999999              6779999999        999997 63

>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*

Probab=99.55  E-value=1.8e-15  Score=125.48  Aligned_cols=106  Identities=14%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             CCceeeeecccccCC--CCCcccccceeeeecCC--------C---------C--eEEeeeccCCCCcccceeeeccCCH
Q 025404          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDED--------E---------N--VIFHTYVQPQLPVTNYRYEVTGLTE  192 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~--------~---------~--~~~~~~v~P~~~i~~~~~~~~Git~  192 (253)
                      ...++++|+||+|..  .+.++++ +.+.+.+..        |         +  ..++.+|+|..+|+...+++||||+
T Consensus        11 ~~tfVv~DlETTGL~~~~d~IIEI-gaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~   89 (314)
T 3u3y_B           11 MQTLIFLDLEATGLPSSRPEVTEL-CLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK   89 (314)
T ss_dssp             CSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCH
T ss_pred             cCCEEEEEEECCCCCCCCCeEEEE-EEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCH
Confidence            345899999999975  5677787 777764321        0         1  2689999999999999999999999


Q ss_pred             HhhcCC--CCH-HHHHHHHHHHHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhcCCCCCC
Q 025404          193 EDIKNA--MPL-KEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMNYPDH  250 (253)
Q Consensus       193 ~~l~~~--~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~~~~~~~  250 (253)
                      ++|.++  |+| ++|+++|.+++.+.          +...+||||| +.||+.||+....+.
T Consensus        90 e~l~~aG~P~f~~ev~~~l~~fL~~~----------~~~~vLVAHNga~FD~~FL~~el~r~  141 (314)
T 3u3y_B           90 AELEVQGRQRFDDNLAILLRAFLQRQ----------PQPCCLVAHNGDRYDFPLLQTELARL  141 (314)
T ss_dssp             HHHHHTTCCBSCHHHHHHHHHHHHTS----------CSSEEEEETTTTTTHHHHHHHHHHTS
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHhcC----------CCCcEEEEeCcHHHHHHHHHHHHHHc
Confidence            999998  899 79999999999210          0228999999 999999998644443

>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}

Probab=99.55  E-value=1.4e-15  Score=117.50  Aligned_cols=107  Identities=17%  Similarity=0.247  Sum_probs=78.5

Q ss_pred             CCCceeeeecccccCC--CCCcccccceeeeecCCCCeE---Eeeecc-CCC---Ccccc---eeeeccCCHHhhcCCCC
Q 025404          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQ-PQL---PVTNY---RYEVTGLTEEDIKNAMP  200 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~~---~~~~v~-P~~---~i~~~---~~~~~Git~~~l~~~~~  200 (253)
                      ....++++|+||||..  .+.++++ +.+ +++.++.++   +..+|+ |..   .++++   ...++|||+++++++|+
T Consensus         7 ~~~~~v~~D~ETTGL~p~~d~IiEI-gaV-~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~   84 (186)
T 3tr8_A            7 SDDNLIWLDLEMTGLDPERDRIIEI-ATI-VTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD   84 (186)
T ss_dssp             CTTCEEEEEEEESSSCTTTCCEEEE-EEE-EECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred             CCCcEEEEEEECCCCCCCCCceEEE-EEE-EEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence            4457899999999975  5677777 777 666655653   344575 542   23444   44567999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCCCC
Q 025404          201 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD  249 (253)
Q Consensus       201 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~  249 (253)
                      +++|..++++++..    |. .   .++.+|||||+.||++||+-..++
T Consensus        85 ~~ev~~~~l~fl~~----~~-~---~~~~~lvghn~~FD~~FL~~~~~~  125 (186)
T 3tr8_A           85 EVEAETLTLAFLEK----YV-S---AGKSPLCGNSVCQDRRFLSRYMPR  125 (186)
T ss_dssp             HHHHHHHHHHHHTT----TS-C---TTCSCEEESSTHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHH----hc-c---CCCcEEEEEcHHHhHHHHHHHHHH
Confidence            99999999999921    00 0   145799999999999999876554

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}

Probab=99.54  E-value=1.4e-15  Score=128.61  Aligned_cols=104  Identities=17%  Similarity=0.314  Sum_probs=84.0

Q ss_pred             CCceeeeecccccCC------CCCcccccceeeeecCCCCe--EEeeeccCCC--CcccceeeeccCCHHhhcCCCCHHH
Q 025404          134 GPKAVAMDCEMVGGG------SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  203 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~------~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~~--~i~~~~~~~~Git~~~l~~~~~~~~  203 (253)
                      ...++++|+||+|..      .+.++++ +.|.+...++++  .|+.+|+|..  +|+++++++||||+++|+++++|.+
T Consensus       127 ~~~~vviD~ETTGl~~~~~~~~deIIEI-gaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~e  205 (349)
T 1zbu_A          127 YDYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ  205 (349)
T ss_dssp             CSEEEECCCEECCCTTCCTTCCCCEEEC-CEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHH
T ss_pred             CCeEEEEEEecCCCCCcCCCCCCeEEEE-EEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHH
Confidence            456899999999973      3566776 777775445676  4999999998  8999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhh-hhcC
Q 025404          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLRM  245 (253)
Q Consensus       204 v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~-~l~~  245 (253)
                      |+.+|.+++.+...       .....+|||||+.||+. ||+.
T Consensus       206 Vl~~f~~~l~~~~~-------~~~~~~lVaHNa~FD~~~fL~~  241 (349)
T 1zbu_A          206 VLKKVIDLMKLKEL-------GTKYKYSLLTDGSWDMSKFLNI  241 (349)
T ss_dssp             HHHHHHHHHHHTTB-------TTTBCEEEEESSSHHHHTHHHH
T ss_pred             HHHHHHHHHhcccc-------cCCCcEEEEECcHhhHHHHHHH
Confidence            99999999932100       00125999999999999 9975

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.54  E-value=8e-15  Score=105.83  Aligned_cols=83  Identities=28%  Similarity=0.454  Sum_probs=70.7

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhc-CCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccc
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKIS-YHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNL   83 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~-~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~   83 (253)
                      +++||.|+.|++.|.....|..|++.+ .|.++++ .|+.|++.|.+...|..|+     +++|.            |+.
T Consensus        32 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~   99 (124)
T 2dlq_A           32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK------------CSS   99 (124)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEE------------CSS
T ss_pred             CCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcc------------CCC
Confidence            578999999999999999999999852 1567777 9999999999999999998     45665            566


Q ss_pred             cccccCChHHHHHHHH-HccCCC
Q 025404           84 CMNIFDSPSSLIKHKE-ACSLSA  105 (253)
Q Consensus        84 C~k~f~~~~~l~~H~~-~h~~~~  105 (253)
                      |++.|.+.+.|..|++ .|.+++
T Consensus       100 C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A          100 CSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             SCCEESSHHHHHHHHHHTSSCSS
T ss_pred             ccchhCCHHHHHHHHHHHCCCCC
Confidence            8888999999999998 466653

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.54  E-value=5.2e-15  Score=100.54  Aligned_cols=78  Identities=27%  Similarity=0.538  Sum_probs=67.8

Q ss_pred             CCCcccccc--cccccCCHHHHHHhhhhcCCCCCcc-ccc--cccccccCHHHHhhhh-----CCCCCCCcCCccccccc
Q 025404           11 STARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG   80 (253)
Q Consensus        11 ~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~   80 (253)
                      +.++|.|+.  |++.|.....|..|+++  |.++++ .|+  .|++.|.+...|..|+     +++|.            
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~------------   67 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRT--HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ------------   67 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTT--SCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEE------------
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHh--cCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCcc------------
Confidence            467899998  99999999999999999  999888 997  6999999999999998     45665            


Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |+.|++.|.+.+.|..|+++|.
T Consensus        68 C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           68 CQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CSSSSCEESSHHHHHHHGGGGC
T ss_pred             CCCCCcccCCHHHHHHHHHhhC
Confidence            5667788889999999998884

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=9.3e-15  Score=97.07  Aligned_cols=67  Identities=21%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             CCCCCcccccc--cccccCCHHHHHHhhh-hcCCCCCcc-cccc--ccccccCHHHHhhhh-----CCCCCCCcCCcccc
Q 025404            9 KRSTARHKCVA--CYKQFKRKDHLIEHMK-ISYHSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFS   77 (253)
Q Consensus         9 ~~~~k~~~C~~--C~k~f~~~~~l~~H~~-~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~   77 (253)
                      ++++++|.|..  |++.|.....|..|++ .  |+++++ .|+.  |++.|.+...|..|+     +++|.|..|++.|.
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~--H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQ--HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHG--GGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHH--hCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            56889999986  9999999999999999 7  998888 9998  999999999999998     67888888888773

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5

Probab=99.48  E-value=4.1e-14  Score=114.10  Aligned_cols=103  Identities=21%  Similarity=0.228  Sum_probs=81.2

Q ss_pred             CCCceeeeecccccCC--CCCcccccceeeeecC--------------CCCe--EEeeeccCCCCcccceeeeccCCHHh
Q 025404          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDE--------------DENV--IFHTYVQPQLPVTNYRYEVTGLTEED  194 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~--------------~~~~--~~~~~v~P~~~i~~~~~~~~Git~~~  194 (253)
                      ....++++|+||+|..  .+.++++ +.+.+.+.              .+++  .++.+|+|..+|+++.+++||||+++
T Consensus         8 ~~~~~v~iD~ETTGl~~~~~~IieI-g~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~   86 (238)
T 1y97_A            8 RAETFVFLDLEATGLPSVEPEIAEL-SLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEG   86 (238)
T ss_dssp             CCSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred             ccCeEEEEEeeCCCcCCCCCcEEEE-EEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHH
Confidence            3456899999999975  3556666 66666432              1244  58999999999999999999999999


Q ss_pred             h--cCCCCH-HHHHHHHHHHHhcCCCCCcccccCCCCeEEEeech-hhhhhhhcCC
Q 025404          195 I--KNAMPL-KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRMN  246 (253)
Q Consensus       195 l--~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~~~  246 (253)
                      |  .++|+| ++|+..|.+++..          .+.+.+|||||+ .||+.||+-.
T Consensus        87 l~~~~~p~f~~~v~~~l~~fl~~----------~~~~~~lVahN~~~FD~~fL~~~  132 (238)
T 1y97_A           87 LARCRKAGFDGAVVRTLQAFLSR----------QAGPICLVAHNGFDYDFPLLCAE  132 (238)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHTT----------SCSSEEEEETTTTTTHHHHHHHH
T ss_pred             HhhcCCCccHHHHHHHHHHHHHh----------CCCCCEEEecCchhhhHHHHHHH
Confidence            9  577999 5999999999921          011389999999 9999999753

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=7.4e-16  Score=110.10  Aligned_cols=93  Identities=9%  Similarity=0.029  Sum_probs=77.1

Q ss_pred             HHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhhCC--CCCCCcCCccccccccccccccc--CChHHHHHHHHHcc
Q 025404           28 DHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTG--PLSKAHCSGIFSDRGCNLCMNIF--DSPSSLIKHKEACS  102 (253)
Q Consensus        28 ~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~--~~~C~~C~~~f~~~~C~~C~k~f--~~~~~l~~H~~~h~  102 (253)
                      ..|..|+++  |+++++ .|+.|++.|.+...|..|+..  .+.+...      ..|..|++.|  .....|..|+++|+
T Consensus         5 ~~l~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~------~~C~~C~~~f~f~~~~~l~~H~~~H~   76 (115)
T 2dmi_A            5 SSGKLYGSI--FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH------ETDNNNPKRWSKPRKRSLLEMEGKED   76 (115)
T ss_dssp             CCCCCCCCC--CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCC------CCCCCCCSCCSSCCCCCCCCCCCSCC
T ss_pred             hhhhhheee--eCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCC------ccCCCCCcccccccHHHHHHHhhccC
Confidence            457789999  999999 999999999999999999832  3222111      1277888888  88999999999999


Q ss_pred             CCCCCC---ccccCccchhhhhhcccccc
Q 025404          103 LSAPVP---FEKTLSNAESQKKISGAIDE  128 (253)
Q Consensus       103 ~~~~~~---C~~~f~~~~~l~~h~~~~~~  128 (253)
                      +++||.   |++.|.....|..|+..+..
T Consensus        77 ~~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           77 AQKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             CCcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            999997   99999999999999976553

>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5

Probab=99.48  E-value=2.3e-14  Score=114.51  Aligned_cols=106  Identities=24%  Similarity=0.326  Sum_probs=80.4

Q ss_pred             CCceeeeecccccCCC--CCcccccceeeee-cCCCCe----EEeeeccC--CCCcccceeeeccCCHHh-hcCCCCHHH
Q 025404          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLV-DEDENV----IFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLKE  203 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv-~~~~~~----~~~~~v~P--~~~i~~~~~~~~Git~~~-l~~~~~~~~  203 (253)
                      ...++++|+||+|...  +.++++ +.+.+. +.+|++    .++.+|+|  ..+|+++.+++||||+++ +++++++.+
T Consensus        28 ~~~~vviD~ETTGl~~~~~~IieI-g~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~  106 (224)
T 2f96_A           28 GYLPVVVDVETGGFNSATDALLEI-AATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEA  106 (224)
T ss_dssp             TEEEEEEEEEESSSCTTTBCEEEE-EEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHH
T ss_pred             CCcEEEEEeeCCCCCCCCCeeEEE-EEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHH
Confidence            3457999999999763  456666 666663 125664    58899999  578999999999999985 889999999


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       204 v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      |..++.++|.+-     +......+.+|||||+.||+.||+.
T Consensus       107 v~~~~~~~l~~~-----~~~~~~~~~~lV~hn~~FD~~fL~~  143 (224)
T 2f96_A          107 ALTEIFRGIRKA-----LKANGCKRAILVGHNSSFDLGFLNA  143 (224)
T ss_dssp             HHHHHHHHHHHH-----HHHTTCSEEEEEETTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----hhhcccCCCEEEEeChhhhHHHHHH
Confidence            999999998210     0000002679999999999999974

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.48  E-value=2e-14  Score=96.64  Aligned_cols=74  Identities=27%  Similarity=0.501  Sum_probs=66.9

Q ss_pred             cccc--cccccccCCHHHHHHhhhhcCCCCCcc-cccc--ccccccCHHHHhhhh---CCCCCCCcCCcccccccccc--
Q 025404           14 RHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNL--   83 (253)
Q Consensus        14 ~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~---~~~~~C~~C~~~f~~~~C~~--   83 (253)
                      ||.|  +.|++.|.....|..|+++  |.++++ .|+.  |++.|.+...|..|+   .+ |.            |..  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~------------C~~~~   65 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFS--HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-YP------------CKKDD   65 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH--HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-EE------------CCSCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHH--hCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-CC------------CCCCC
Confidence            6899  9999999999999999999  999999 9988  999999999999998   33 44            455  


Q ss_pred             -cccccCChHHHHHHHHHcc
Q 025404           84 -CMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        84 -C~k~f~~~~~l~~H~~~h~  102 (253)
                       |++.|.+.+.|..|+++|+
T Consensus        66 ~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           66 SCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCccCCHHHHHHHHHhcC
Confidence             8899999999999999885

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.47  E-value=7.4e-14  Score=104.92  Aligned_cols=107  Identities=16%  Similarity=0.222  Sum_probs=82.1

Q ss_pred             CCcc-ccccccccccCHHHHhhhhC------CCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC-----
Q 025404           41 VHQP-KCAVCQKLSKSFESLREHLT------GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP-----  108 (253)
Q Consensus        41 ~~~~-~C~~C~~~f~~~~~l~~H~~------~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~-----  108 (253)
                      +... .|..|++.|.+...|..|+.      .+.....|.    ...|..|++.|.+...|..|+++|++++||.     
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~   97 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY----WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG   97 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCC----BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTT
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCcccc----ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCC
Confidence            3445 99999999999999999982      122222221    1248999999999999999999999999985     


Q ss_pred             ccccCccchhhhhhccccccccccCCCceeeeeccc--ccCCCCCccccccee
Q 025404          109 FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEM--VGGGSNGTLDLCARV  159 (253)
Q Consensus       109 C~~~f~~~~~l~~h~~~~~~~r~~~~~~~~~~dcE~--~g~~~~~~~~ll~~v  159 (253)
                      |++.|.....|..|+..+.+.        ..+.|+.  |+..+.....+..++
T Consensus        98 C~~~f~~~~~L~~H~~~h~~~--------~~~~C~~~~C~k~f~~~~~L~~H~  142 (155)
T 2rpc_A           98 CGKIFARSENLKIHKRTHTGE--------KPFKCEFEGCDRRFANSSDRKKHM  142 (155)
T ss_dssp             TCCEESCHHHHHHHHTTTCSS--------CSBCCSSTTCCCCBSSHHHHHHSS
T ss_pred             CCCccCCHHHHHHHHHhhCCC--------CCccCCCCCCCCccCCHHHHHHHH
Confidence            788999999999999766542        3477886  998887777663333

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A

Probab=99.46  E-value=2e-14  Score=120.01  Aligned_cols=95  Identities=21%  Similarity=0.308  Sum_probs=78.9

Q ss_pred             CceeeeecccccCCCC-----CcccccceeeeecCCCCe----EEeeeccCCCC--cccceeeeccCCHHhhcCCCCHHH
Q 025404          135 PKAVAMDCEMVGGGSN-----GTLDLCARVCLVDEDENV----IFHTYVQPQLP--VTNYRYEVTGLTEEDIKNAMPLKE  203 (253)
Q Consensus       135 ~~~~~~dcE~~g~~~~-----~~~~ll~~v~iv~~~~~~----~~~~~v~P~~~--i~~~~~~~~Git~~~l~~~~~~~~  203 (253)
                      ..++++|+||+|....     .++++ +.+.+-..+|++    .++.+|+|...  |+++++++||||+++|+++++|.+
T Consensus        19 ~~~vviD~ETTGl~~~~d~~~eIIEI-gaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~~e   97 (308)
T 3cg7_A           19 DTLLILDFETTSDAANQDYPCEVIQF-AIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDV   97 (308)
T ss_dssp             SEEEEEEEEECCBTTBCSCCCCEEEE-EEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHHH
T ss_pred             CeEEEEEeecCCCCCCCCCCCCeEEE-EEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCHHH
Confidence            4589999999997643     45555 555442236666    38999999984  999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCCCeEEEeech------hhhh-hhhc
Q 025404          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGL------EHDL-DSLR  244 (253)
Q Consensus       204 v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~------~~D~-~~l~  244 (253)
                      |+.+|.+++              ++.+|||||+      .||+ .||+
T Consensus        98 vl~~f~~~l--------------~~~~lvahn~~lv~~g~fD~~~fL~  131 (308)
T 3cg7_A           98 VYEQFQQWL--------------ITLGLEEGKFAFVCDSRQDLWRIAQ  131 (308)
T ss_dssp             HHHHHHHHH--------------HHHCCCTTSEEEEESSSHHHHTHHH
T ss_pred             HHHHHHHHH--------------HhCCcCCcceEEeccCcccHHHHHH
Confidence            999999999              6778899999      9999 7885

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.45  E-value=7.4e-14  Score=96.19  Aligned_cols=80  Identities=24%  Similarity=0.319  Sum_probs=69.6

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---c
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---F  109 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C  109 (253)
                      +.++++ .|..|++.|.+...|..|+     +++|.            |+.|++.|.....|..|+++|+++++|.   |
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   70 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK------------CKTCDYAAADSSSLNKHLRIHSDERPFKCQIC   70 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEE------------CSSSCCEESSHHHHHHHHHHSCCCCCEECSSS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEe------------CCCCCCccCCHHHHHHHHHHhCCCCCccCCCC
Confidence            567778 9999999999999999998     34444            6678889999999999999999999996   9


Q ss_pred             cccCccchhhhhhcccccccc
Q 025404          110 EKTLSNAESQKKISGAIDEKR  130 (253)
Q Consensus       110 ~~~f~~~~~l~~h~~~~~~~r  130 (253)
                      ++.|.....|..|++.+.+..
T Consensus        71 ~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           71 PYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             SCEESSHHHHHHHHTTCCSCC
T ss_pred             CCccCCHHHHHHHHHHhcCCC
Confidence            999999999999998776543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=5.9e-14  Score=97.83  Aligned_cols=69  Identities=14%  Similarity=0.171  Sum_probs=53.0

Q ss_pred             CCCCCCcccccccccccCCHHHHHHhhh-hcCCCC---CccccccccccccCHHHHhhhhCCCCCCCcCCcccccccccc
Q 025404            8 PKRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSV---HQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNL   83 (253)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~---~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~   83 (253)
                      -.+|++||.|+.|++.|..++.|..|++ .  |++   ++                      ||.            |..
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~--H~~~~~ek----------------------pf~------------C~~   55 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSE--HPNVVLNS----------------------SYV------------CVE   55 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHH--CSSCCCSC----------------------CEE------------ETT
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhh--CCCCCCCC----------------------CcC------------CCC
Confidence            4679999999999999999999999997 6  743   33                      333            455


Q ss_pred             cccccCChHHHHHH-HHHccCCCCCCcccc
Q 025404           84 CMNIFDSPSSLIKH-KEACSLSAPVPFEKT  112 (253)
Q Consensus        84 C~k~f~~~~~l~~H-~~~h~~~~~~~C~~~  112 (253)
                      ||+.|...+.|..| +++|++++||.|...
T Consensus        56 Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           56 CNFLTKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             TTEEESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             CCcccCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            66667777778888 678888888887653

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.43  E-value=4.6e-14  Score=88.51  Aligned_cols=51  Identities=25%  Similarity=0.458  Sum_probs=27.9

Q ss_pred             Ccc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCC
Q 025404           42 HQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        42 ~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |+| +|++||+.|.+.++|..|+     ++||.            |++||++|.+.+.|..|+++|+|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~------------C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRS------------CPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEE------------CTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeE------------CCCCCCCcCCHHHHHHHhCccCCC
Confidence            344 5666666666666666555     34444            333445555555666666665554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=3e-13  Score=89.32  Aligned_cols=64  Identities=33%  Similarity=0.533  Sum_probs=48.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~   87 (253)
                      ..+++||.|+.|++.|.....|..|+++  |+++++ .|+.                                   |++.
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~-----------------------------------C~~~   55 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRT--HTGEKPYKCDE-----------------------------------CGKA   55 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTT--TCCSCSEECSS-----------------------------------SCCE
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHH--cCCCcCeeCCC-----------------------------------CCCc
Confidence            5578999999999999999999999999  877655 4444                                   4555


Q ss_pred             cCChHHHHHHHHHccCCCCCCc
Q 025404           88 FDSPSSLIKHKEACSLSAPVPF  109 (253)
Q Consensus        88 f~~~~~l~~H~~~h~~~~~~~C  109 (253)
                      |.....|..|+++|++++||+|
T Consensus        56 f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           56 FIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             ESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCHHHHHHHHHHhCCCCCCCC
Confidence            5666666777777777777765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.41  E-value=9.7e-14  Score=97.73  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=70.5

Q ss_pred             hhhhcCCCCCcc-ccccccccccCHHHHhhhh---CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC
Q 025404           33 HMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (253)
Q Consensus        33 H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~  108 (253)
                      ++++  |+++++ .|..|++.|.....|..|+   +++|.            |..|++.|.....|..|++ |++++||.
T Consensus         7 ~~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~------------C~~C~~~f~~~~~l~~H~~-H~~~~~~~   71 (107)
T 1wjp_A            7 GASP--VENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV------------CPYCSLRFFSPELKQEHES-KCEYKKLT   71 (107)
T ss_dssp             CCCC--CCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBC------------CTTTCCCBSSHHHHHHHHH-HCSTGGGE
T ss_pred             cCcc--cCCCcCeECCCCCCccCCHHHHHHHHHHCCCCcc------------CCCCCCccCCHHHHHHHHH-cCCCCCcc
Confidence            4667  899999 9999999999999999998   55665            5667788899999999996 99999997


Q ss_pred             ---ccccCccchhhhhhcc-cccc
Q 025404          109 ---FEKTLSNAESQKKISG-AIDE  128 (253)
Q Consensus       109 ---C~~~f~~~~~l~~h~~-~~~~  128 (253)
                         |++.|.....|..|++ .+.+
T Consensus        72 C~~C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           72 CLECMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             EGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             CccccchhCCHHHHHHHHHHHcCC
Confidence               8999999999999996 5543

>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A

Probab=99.41  E-value=9.7e-14  Score=111.72  Aligned_cols=107  Identities=20%  Similarity=0.303  Sum_probs=81.2

Q ss_pred             CCceeeeecccccCC--CCCcccccceeeee-cCCCCe----EEeeeccC--CCCcccceeeeccCCHH-hhcCCCCHHH
Q 025404          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLV-DEDENV----IFHTYVQP--QLPVTNYRYEVTGLTEE-DIKNAMPLKE  203 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv-~~~~~~----~~~~~v~P--~~~i~~~~~~~~Git~~-~l~~~~~~~~  203 (253)
                      ...++++|+||+|..  .+.++++ +.+.+. +.+|.+    .+..+|+|  ..+++++.++++|||++ ++.+++++.+
T Consensus        36 ~~~~vviD~ETTGl~~~~~~IieI-gav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~~  114 (235)
T 3v9w_A           36 GFYPVVIDVETAGFNAKTDALLEI-AAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYE  114 (235)
T ss_dssp             TEEEEEEEEEESSSCTTTBCEEEE-EEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHHH
T ss_pred             CCcEEEEEEeCCCCCCCCCeEEEE-EEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHH
Confidence            446899999999975  3455665 666652 235664    57888999  56899999999999999 8999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       204 v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                      ++.++.+++.+-     +......+.+|||||+.||+.||+..
T Consensus       115 vl~~~~~~l~~~-----~~~~~~~~~~lVahN~~fD~~~L~~~  152 (235)
T 3v9w_A          115 ALHEIFKVVRKG-----IKASGCNRAIMVAHNANFDHSFMMAA  152 (235)
T ss_dssp             HHHHHHHHHHHH-----HTTTTCCEEEEEETTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----hhhccCCCcEEEEeChHHHHHHHHHH
Confidence            999999999210     00000036799999999999999654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.38  E-value=5.4e-13  Score=93.58  Aligned_cols=79  Identities=16%  Similarity=0.280  Sum_probs=68.2

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---c
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---F  109 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C  109 (253)
                      ..++++ .|..|++.|.+...|..|+     +++|.            |..|++.|.+...|..|+++|++++||.   |
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   79 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT------------CDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC   79 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCB------------CSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSS
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcC------------CCCccchhCCHHHHHHHHHHhCCCCCeECCCc
Confidence            344566 9999999999999999998     45665            5667788899999999999999999997   8


Q ss_pred             cccCccchhhhhhccccccc
Q 025404          110 EKTLSNAESQKKISGAIDEK  129 (253)
Q Consensus       110 ~~~f~~~~~l~~h~~~~~~~  129 (253)
                      ++.|.+...|..|+..+.+.
T Consensus        80 ~~~f~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           80 GKGFCQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             CCCCSSHHHHHHHHHHTTSC
T ss_pred             CCcccCHHHHHHHHHHhCCC
Confidence            99999999999999877653

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.37  E-value=5e-13  Score=87.57  Aligned_cols=64  Identities=30%  Similarity=0.562  Sum_probs=51.0

Q ss_pred             CCCCCCcccccccccccCCHHHHHHhhhhcCCCCCccccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccc
Q 025404            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (253)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~   87 (253)
                      ...++++|+|+.|++.|.....|..|+++  |+++++                      |.            |..|++.
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~----------------------~~------------C~~C~k~   54 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTV--HTGEKP----------------------YR------------CNICGAQ   54 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHH--HCCCCS----------------------EE------------CTTTCCE
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHH--cCCCCC----------------------EE------------CCCCCch
Confidence            45678999999999999999999999999  876544                      33            4445666


Q ss_pred             cCChHHHHHHHHHccCCCCC
Q 025404           88 FDSPSSLIKHKEACSLSAPV  107 (253)
Q Consensus        88 f~~~~~l~~H~~~h~~~~~~  107 (253)
                      |.+.+.|..|+++|++++||
T Consensus        55 f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           55 FNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             ESCHHHHHHHHHHHCCSCCC
T ss_pred             hCCHHHHHHHHHhcCCCCCC
Confidence            77777888888888888876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.36  E-value=2.9e-13  Score=91.98  Aligned_cols=75  Identities=20%  Similarity=0.472  Sum_probs=65.1

Q ss_pred             Ccc-ccc--cccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---cc
Q 025404           42 HQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FE  110 (253)
Q Consensus        42 ~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~  110 (253)
                      +++ .|.  .|++.|.+...|..|+     .++|.            |..|++.|.+...|..|+++|++++||.   |+
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   69 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ------------CRICMRNFSRSDHLTTHIRTHTGEKPFACDICG   69 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEE------------CTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCcc------------CCCCCcccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            566 897  6999999999999998     45555            5667888999999999999999999996   89


Q ss_pred             ccCccchhhhhhcccccc
Q 025404          111 KTLSNAESQKKISGAIDE  128 (253)
Q Consensus       111 ~~f~~~~~l~~h~~~~~~  128 (253)
                      +.|...+.|..|+..+.+
T Consensus        70 ~~f~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           70 RKFARSDERKRHTKIHLR   87 (90)
T ss_dssp             CEESSHHHHHHHHGGGGC
T ss_pred             chhCCHHHHHHHHHHhcc
Confidence            999999999999987754

>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*

Probab=99.36  E-value=2.9e-13  Score=118.86  Aligned_cols=97  Identities=18%  Similarity=0.190  Sum_probs=79.6

Q ss_pred             CCceeeeecccccCCC--CCcccccceeeeecCCCCeE---EeeeccCCCCc--ccceeeeccCCHHhhcCCCC-HHHHH
Q 025404          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI---FHTYVQPQLPV--TNYRYEVTGLTEEDIKNAMP-LKEVK  205 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~~--~~~~~ll~~v~iv~~~~~~~---~~~~v~P~~~i--~~~~~~~~Git~~~l~~~~~-~~~v~  205 (253)
                      ...++++|+||+|...  +.++++ +.|.+ +.+|.++   ++.+|+|..++  .+..+.+||||+++|.+++. +.+|+
T Consensus         8 ~~~~vv~DlETTGl~p~~d~IIEI-gaV~v-d~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl   85 (482)
T 2qxf_A            8 QSTFLFHDYETFGTHPALDRPAQF-AAIRT-DSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFA   85 (482)
T ss_dssp             CCEEEEEEEEESSSCTTTSCEEEE-EEEEE-CTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCeEEEE-EEEEE-ECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHH
Confidence            4568999999999763  456666 66654 4466664   99999999887  56788999999999997665 49999


Q ss_pred             HHHHHHHhcCCCCCcccccCCC--CeEEEeec-hhhhhhhhcCC
Q 025404          206 DKILEILNNGESTGRLMLDDGK--ARLLVGHG-LEHDLDSLRMN  246 (253)
Q Consensus       206 ~~l~~~~~~~~~~~~~~~~~~~--~~~lv~h~-~~~D~~~l~~~  246 (253)
                      .+|.+++              .  +.+||||| +.||+.||+..
T Consensus        86 ~~f~~~l--------------~~~~~~lVaHNs~~FD~~fL~~~  115 (482)
T 2qxf_A           86 ARIHSLF--------------TVPKTCILGYNNVRFDDEVTRNI  115 (482)
T ss_dssp             HHHHHHH--------------TSTTEEEEESSTTTTHHHHHHHH
T ss_pred             HHHHHHH--------------cCCCCEEEEECCHHHHHHHHHHH
Confidence            9999999              5  88999999 99999999754

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.36  E-value=6.6e-13  Score=89.29  Aligned_cols=53  Identities=25%  Similarity=0.419  Sum_probs=46.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      ..+.++|.|+.|++.|.....|..|+++  |++++| .|+.|++.|.+.++|.+|+
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~--H~~~k~~~C~~C~k~F~~~~~L~~H~   76 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRL--LHAAQVFPCKYCPATFYSSPGLTRHI   76 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHT--TSCSSSEECTTSSCEESSHHHHHHHH
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhh--ccCCCccCCCCCCCEeCCHHHHHHhC
Confidence            3467899999999999999999999999  999888 8888888888888888886

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.35  E-value=2.3e-13  Score=90.73  Aligned_cols=71  Identities=27%  Similarity=0.400  Sum_probs=62.9

Q ss_pred             ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---ccccCccc
Q 025404           45 KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNA  116 (253)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~  116 (253)
                      .|..|++.|.+...|..|+     +++|.            |+.|++.|.+...|..|+++|++++||.   |++.|.+.
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   70 (82)
T 2kmk_A            3 DCKICGKSFKRSSTLSTHLLIHSDTRPYP------------CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQS   70 (82)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHTCCCEE------------CSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSH
T ss_pred             cCCCCcccccCchhHHHHHHHcCCCCCee------------CCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCCh
Confidence            7999999999999999998     45665            5667888899999999999999999997   99999999


Q ss_pred             hhhhhhccccc
Q 025404          117 ESQKKISGAID  127 (253)
Q Consensus       117 ~~l~~h~~~~~  127 (253)
                      +.|..|++.+.
T Consensus        71 ~~l~~H~~~H~   81 (82)
T 2kmk_A           71 SNLITHSRKHT   81 (82)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            99999986553

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=2.2e-13  Score=96.33  Aligned_cols=76  Identities=18%  Similarity=0.273  Sum_probs=67.7

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---c
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---F  109 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C  109 (253)
                      |+++++ .| .|++.|.+...|..|+     +++|.            |..|++.|.+...|..|+++|+++++|.   |
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   71 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYG------------CGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC   71 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEE------------CTTTSCEESSSHHHHHHHTTTCCCCCEECSSS
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCcc------------CCCCCcccCCHHHHHHHHHHcCCCCCeeCCCC
Confidence            899999 99 9999999999999998     34554            5668888999999999999999999996   8


Q ss_pred             cccCccchhhhhhccccc
Q 025404          110 EKTLSNAESQKKISGAID  127 (253)
Q Consensus       110 ~~~f~~~~~l~~h~~~~~  127 (253)
                      ++.|.....|..|++.+.
T Consensus        72 ~~~f~~~~~l~~H~~~~~   89 (110)
T 2csh_A           72 AKRFMWRDSFHRHVTSCT   89 (110)
T ss_dssp             CCEESCHHHHHHHHHHHH
T ss_pred             cchhcCHHHHHHHHHHcc
Confidence            999999999999997654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=1.3e-12  Score=87.92  Aligned_cols=65  Identities=20%  Similarity=0.433  Sum_probs=35.5

Q ss_pred             HHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----C----CCCCCCcCCcccccccccccccccCChHHHHHHHHH
Q 025404           31 IEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----T----GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEA  100 (253)
Q Consensus        31 ~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~----~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~  100 (253)
                      ..|+++  |+++++ .|..|++.|.+...|..|+     .    ++|.            |..|++.|.+...|..|+++
T Consensus         4 ~~H~~~--H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~------------C~~C~~~f~~~~~L~~H~~~   69 (86)
T 1x6h_A            4 GSSGRT--HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFV------------CSKCGKTFTRRNTMARHADN   69 (86)
T ss_dssp             TCCSTT--CCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEE------------CSSSCCEESCHHHHHHHHHH
T ss_pred             ccccce--ecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceE------------CCCCCChhCCHHHHHHHHHH
Confidence            344554  555554 5555555555555555554     0    2232            44555666666666666666


Q ss_pred             ccCCCCCCc
Q 025404          101 CSLSAPVPF  109 (253)
Q Consensus       101 h~~~~~~~C  109 (253)
                      |++++++.|
T Consensus        70 h~~~~~~~~   78 (86)
T 1x6h_A           70 CAGPDGVEG   78 (86)
T ss_dssp             CCCCCSCCC
T ss_pred             ccCCCCccc
Confidence            666666653

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.34  E-value=4.6e-13  Score=82.94  Aligned_cols=51  Identities=31%  Similarity=0.587  Sum_probs=41.1

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      |++||+|+.|++.|.....|..|+++  |+++++ .|+.|++.|.+.+.|..|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   52 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRT--HTGEKPYKCEFCEYAAAQKTSLRYHL   52 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHH--HHCCCCEECSSSSCEESSHHHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHH--cCCCCCcCCCCCcchhCCHHHHHHHH
Confidence            57899999999999999999999999  888887 7877777777777777775

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.33  E-value=1e-12  Score=90.24  Aligned_cols=77  Identities=21%  Similarity=0.300  Sum_probs=66.2

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCC--CCCC--
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS--APVP--  108 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~--~~~~--  108 (253)
                      .+++++ .|..|++.|.+...|..|+     +++|.            |+.|++.|.+...|..|+++|+++  +||.  
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~   69 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYS------------CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ   69 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEE------------CSSSCCEESCHHHHHHHHHHHCCCCCSSBCCS
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCc------------CCCCCCccCCHHHHHHHHHHhcCCCCCceECC
Confidence            356777 9999999999999999998     34554            667888999999999999999997  8886  


Q ss_pred             -ccccCccchhhhhhcc-ccc
Q 025404          109 -FEKTLSNAESQKKISG-AID  127 (253)
Q Consensus       109 -C~~~f~~~~~l~~h~~-~~~  127 (253)
                       |++.|.....|..|++ .|.
T Consensus        70 ~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           70 SCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             SSCCCBSSHHHHHHHHHHTSC
T ss_pred             CccchhCCHHHHHHHHHHhcC
Confidence             9999999999999985 444

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=1.6e-12  Score=84.14  Aligned_cols=49  Identities=31%  Similarity=0.478  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHH
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESL   59 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l   59 (253)
                      .++++||+|+.|++.|.....|..|+++  |+++++ .|+.|++.|.+...|
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C~~~f~~~~~L   53 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERI--HCTDRPFKCNYCSFDTKQPSNL   53 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGG--GCCSCSEECSSSSCEESSHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCEeCCCCCCccCCHHHH
Confidence            4578999999999999999999999999  877655 444444444333333

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=6.7e-13  Score=89.33  Aligned_cols=66  Identities=18%  Similarity=0.266  Sum_probs=57.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCC----cc-ccccccccccCHHHHhhhh-----CCCCCCCcCCccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH----QP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIF   76 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~----~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f   76 (253)
                      -++++||.|+.|++.|.....|..|++.  |.+.    ++ .|..|++.|.+...|..|+     +.++.|..|+..|
T Consensus        10 H~~~k~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           10 HTGEKPYACSHCDKTFRQKQLLDMHFKR--YHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHH--TTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             ecCCCCCcCCCCCCccCCHHHHHHHHHH--hcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            3578999999999999999999999988  5443    56 9999999999999999998     6788898888765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.5e-13  Score=94.18  Aligned_cols=71  Identities=18%  Similarity=0.332  Sum_probs=56.7

Q ss_pred             cCCHHHHHHhhhhcCCCCCcc-cccccccccc-CHHHHhhhh------CCCCCCCcCCcccccccccccccccCChHHHH
Q 025404           24 FKRKDHLIEHMKISYHSVHQP-KCAVCQKLSK-SFESLREHL------TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (253)
Q Consensus        24 f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~-~~~~l~~H~------~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~   95 (253)
                      +.....+..|+++  |+++++ .|+.|++.|. +...|..|+      +++|.            |..|++.|.+...|.
T Consensus         6 ~~~~~~~~~h~~~--h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~------------C~~C~k~F~~~~~L~   71 (98)
T 2gqj_A            6 SGPGGPEEQWQRA--IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALK------------CQHCRKQFKSKAGLN   71 (98)
T ss_dssp             CCCCCSCSHHHHT--TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHS------------CSSSCCCCSCHHHHH
T ss_pred             CCCCCcHHHHHHH--hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEE------------CCCCCCccCCHHHHH
Confidence            3444556678888  888888 8888888888 888888887      23565            566778889999999


Q ss_pred             HHHHHccCCCCCC
Q 025404           96 KHKEACSLSAPVP  108 (253)
Q Consensus        96 ~H~~~h~~~~~~~  108 (253)
                      .|+++|++++|..
T Consensus        72 ~H~~~h~~~kp~~   84 (98)
T 2gqj_A           72 YHTMAEHSAKPSD   84 (98)
T ss_dssp             HHHHHHSCSCSSC
T ss_pred             HHHHHHcCCCCCC
Confidence            9999999999864

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.31  E-value=3.3e-13  Score=98.21  Aligned_cols=104  Identities=13%  Similarity=0.058  Sum_probs=71.6

Q ss_pred             CCCCCCcccccccc--cccCCHHHHHHhhhhcCCCCCcc-cccccccccc------CHHHHhhhh----CCCCCCCcCCc
Q 025404            8 PKRSTARHKCVACY--KQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSK------SFESLREHL----TGPLSKAHCSG   74 (253)
Q Consensus         8 ~~~~~k~~~C~~C~--k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~------~~~~l~~H~----~~~~~C~~C~~   74 (253)
                      ..+|.|+|.|..++  ..|.....+..|..   ...++. .|+.|++.|.      ..+.|..|+    ++||.|     
T Consensus         6 ~~~~~k~~~~~~k~~~~~~s~ee~~~~~~l---~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~C-----   77 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQL---TPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC-----   77 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEECCHHHHHHHTTS---CHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHCSEEC-----
T ss_pred             hcccccccccccCCeeeeecHHhhhccccC---ChhhCcccchhhhcccCCCcccCCHHHHHHHHHhCCCCCeEC-----
Confidence            35688899886554  33443333333332   223344 7877776665      667777776    567764     


Q ss_pred             ccccccccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhcccccc
Q 025404           75 IFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDE  128 (253)
Q Consensus        75 ~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~~~~~  128 (253)
                             +.||+.|...+.|..|+++|  ++||.   |++.|...+.|..|+..+++
T Consensus        78 -------~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           78 -------PLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             -------TTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             -------CCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence                   55777888889999999998  88886   88889999999999876654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.4e-12  Score=86.01  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=43.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhccccccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDEK  129 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~~~~~~  129 (253)
                      |+.|++.|.....|..|+++|++++||.   |++.|.....|..|+..+.+.
T Consensus        21 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A           21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             CSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCC
Confidence            5678888999999999999999999996   899999999999999777653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=2.2e-12  Score=89.01  Aligned_cols=73  Identities=16%  Similarity=0.287  Sum_probs=60.9

Q ss_pred             cccCCHHHHHHhhhhcCCCCCcc-ccccccccc-cCHHHHhhhh----CCCCCCCcCCcccccccccccccccCChHHHH
Q 025404           22 KQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLS-KSFESLREHL----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (253)
Q Consensus        22 k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f-~~~~~l~~H~----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~   95 (253)
                      ..|.....|..|++.  |.++++ .|+.|++.| .+.++|..|+    +++|.            |.+|++.|.+.+.|+
T Consensus        14 ~~~~~~~~~~~~~~~--~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~------------C~~Cgk~F~~~~~L~   79 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLE--IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFT------------CHHCGKQLRSLAGMK   79 (96)
T ss_dssp             CSSCTTCHHHHHHHH--HHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCC------------CSSSCCCCSSHHHHH
T ss_pred             CCCCCchHHHHHHHH--hcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeE------------CCCCCCeeCCHHHHH
Confidence            356777889999999  888888 999999999 9999999998    45665            566788889999999


Q ss_pred             HH-HHHccCCCCCC
Q 025404           96 KH-KEACSLSAPVP  108 (253)
Q Consensus        96 ~H-~~~h~~~~~~~  108 (253)
                      .| +++|+++..++
T Consensus        80 ~H~~~~H~~~p~~~   93 (96)
T 2ctd_A           80 YHVMANHNSLPSGP   93 (96)
T ss_dssp             HHHHHHTCCCSSCS
T ss_pred             HHhHHhcCCCCCCC
Confidence            99 89998765444

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.27  E-value=3.1e-12  Score=83.72  Aligned_cols=49  Identities=16%  Similarity=0.270  Sum_probs=43.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhccccccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDEK  129 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~~~~~~  129 (253)
                      |..|++.|.+.+.|..|+++|++++||.   |++.|.....|..|+..+.+.
T Consensus        20 C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~   71 (74)
T 2lce_A           20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE   71 (74)
T ss_dssp             CTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCS
T ss_pred             CCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCC
Confidence            5678888999999999999999999997   899999999999999777653

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=4.6e-12  Score=82.45  Aligned_cols=52  Identities=31%  Similarity=0.594  Sum_probs=36.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhh
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (253)
                      -++++||+|+.|++.|.....|..|+++  |.++++ .|+.|++.|.+...|..|
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~~~~C~~C~~~f~~~~~L~~H   61 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRV--HTGEKPYKCLECGKAFSQNSGLINH   61 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG--GGCSCCEECSSSCCEESSHHHHHHH
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHh--cCCCCCeECCCCCcccCCHHHHHHH
Confidence            4578899999999999999999999988  777655 554444444444444333

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=4e-12  Score=79.51  Aligned_cols=49  Identities=27%  Similarity=0.631  Sum_probs=44.4

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      +||.|+.|++.|.....|..|+++  |+++++ .|+.|++.|.+.+.|..|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--TTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH--hCCCCCccCCCCCCccCCHHHHHHHH
Confidence            689999999999999999999999  998888 8888888888888888885

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.25  E-value=4.5e-12  Score=87.75  Aligned_cols=76  Identities=17%  Similarity=0.273  Sum_probs=65.0

Q ss_pred             Ccc-cccc--ccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---cc
Q 025404           42 HQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FE  110 (253)
Q Consensus        42 ~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~  110 (253)
                      .++ .|..  |++.|.....|..|+     +++|.|.          ++.|++.|.+...|..|+++|++++||.   |+
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----------~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   82 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCT----------WEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN   82 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECC----------SSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSC
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCC----------CCCCCCccCCHHHHHHHHHHhCCCCCeECCCCc
Confidence            345 8986  999999999999998     4567653          2458899999999999999999999997   89


Q ss_pred             ccCccchhhhhhccccc
Q 025404          111 KTLSNAESQKKISGAID  127 (253)
Q Consensus       111 ~~f~~~~~l~~h~~~~~  127 (253)
                      +.|.....|..|++.+.
T Consensus        83 ~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           83 RSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             CBCSSHHHHHHHHHHHC
T ss_pred             CccCCHHHHHHHHHHhC
Confidence            99999999999986653

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.25  E-value=3.5e-12  Score=86.35  Aligned_cols=72  Identities=18%  Similarity=0.274  Sum_probs=62.6

Q ss_pred             cccc--ccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---ccccCc
Q 025404           45 KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLS  114 (253)
Q Consensus        45 ~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~  114 (253)
                      .|..  |++.|.+...|..|+     +++|.|+          .+.|++.|.+...|..|+++|++++||.   |++.|.
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----------~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (89)
T 2wbs_A            7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCD----------WDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS   76 (89)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHTTSCSSCCEECC----------STTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCC----------CCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccC
Confidence            8988  999999999999998     3455542          1358899999999999999999999996   899999


Q ss_pred             cchhhhhhcccc
Q 025404          115 NAESQKKISGAI  126 (253)
Q Consensus       115 ~~~~l~~h~~~~  126 (253)
                      ..+.|..|++.+
T Consensus        77 ~~~~l~~H~~~H   88 (89)
T 2wbs_A           77 RSDHLALHMKRH   88 (89)
T ss_dssp             SHHHHHHHGGGG
T ss_pred             CHHHHHHHHHhh
Confidence            999999998654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.25  E-value=2.6e-12  Score=82.02  Aligned_cols=53  Identities=17%  Similarity=0.397  Sum_probs=38.6

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCC-CCCcc-ccccccccccCHHHHhhhh
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYH-SVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H-~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      ++++||.|+.|++.|.....|..|++.+ | +++++ .|+.|++.|.+.+.|..|+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~-H~~~~~~~~C~~C~k~f~~~~~L~~H~   60 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTS-HKRNVKVYPCPFCFKEFTRKDNMTAHV   60 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHH-SSSSCCCEECTTTCCEESCHHHHHHHH
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHH-cCCCCcCeECCCCCCccCCHHHHHHHH
Confidence            4678899999999999989999998763 5 46666 6666666666666665554

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=1.4e-11  Score=84.48  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccccCChH
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPS   92 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~f~~~~   92 (253)
                      .|.|+.|++.|.....|..|++++ |+++++ .+..|.               .|            .|..|++.|.+..
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~-H~~~~~~~~~~c~---------------~~------------~C~~C~k~f~~~~   76 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTME-HVGGPEQNNHVCY---------------WE------------ECPREGKSFKAKY   76 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHT-TTCCTTCSCCCCC---------------CT------------TCSSTTCCCSSHH
T ss_pred             CCcccccccccCCHHHHHHHHHHh-ccCCCCCCcccee---------------cc------------CCCCCCcccCCHH
Confidence            366888999999988899998863 666554 333221               12            3778889999999


Q ss_pred             HHHHHHHHccCCCCCCcc
Q 025404           93 SLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        93 ~l~~H~~~h~~~~~~~C~  110 (253)
                      .|..|+++|++++||.|.
T Consensus        77 ~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           77 KLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             HHHHHHHHHHTCCCCSSC
T ss_pred             HHHHHHHhcCCCCCCCCC
Confidence            999999999999999986

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.24  E-value=1.7e-12  Score=94.46  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=66.8

Q ss_pred             CCCcccccccccccC------CHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh---CCCCCCCcCCccccccc
Q 025404           11 STARHKCVACYKQFK------RKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRG   80 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~------~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~~~f~~~~   80 (253)
                      .++++.|+.|.+.|.      ....|..|+ .  |++++| .|+.|++.|.+.++|..|+   ++||.            
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~--h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~------------  102 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-A--SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV------------  102 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-H--HHHHCSEECTTTCCEESSHHHHHHHHHHTCCCCB------------
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHH-H--hCCCCCeECCCCCcccCCHhHHHHHHHHCCCCCC------------
Confidence            467788998887765      667777787 5  888888 9999999999999999998   46665            


Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |+.|++.|.+.+.|..|+++|++.
T Consensus       103 C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          103 CPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCcccCCHHHHHHHHHHHCCc
Confidence            567888999999999999999986

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3.4e-12  Score=84.34  Aligned_cols=51  Identities=22%  Similarity=0.356  Sum_probs=34.9

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCC---Ccc-ccccccccccCHHHHhhh
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSV---HQP-KCAVCQKLSKSFESLREH   62 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~---~~~-~C~~C~~~f~~~~~l~~H   62 (253)
                      ++++||+|+.|++.|.....|..|+++  |.+   +++ .|..|++.|.+...|..|
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~~~~~~~C~~C~k~f~~~~~L~~H   57 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRK--HAETVAALRFPCEFCGKRFEKPDSVAAH   57 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHH--HHHHTTTCCEECTTTCCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHH--hhccCCCcccCCCCCCchhCCHHHHHHH
Confidence            578999999999999999999999998  764   333 444444333333333333

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=7.5e-12  Score=80.91  Aligned_cols=58  Identities=33%  Similarity=0.485  Sum_probs=51.0

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~  108 (253)
                      |+++++ .|+.|++.|.+...|..|+     +++|.            |+.|++.|.+...|..|+++|++++|.+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~------------C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFK------------CNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEE------------CSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEe------------CCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            788888 9999999999999999998     44554            6678889999999999999999998865

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.21  E-value=1e-11  Score=76.69  Aligned_cols=48  Identities=25%  Similarity=0.528  Sum_probs=37.6

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      ||.|+.|++.|.....|..|+++  |+++++ .|+.|++.|.+.+.|..|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   49 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT--HTDVRPYHCTYCNFSFKTKGNLTKHM   49 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--TSSCCCEECSSSSCEESSHHHHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh--cCCCCCccCCCCCchhcCHHHHHHHH
Confidence            68999999999999999999999  888776 6666666665555555554

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=4.8e-14  Score=91.97  Aligned_cols=68  Identities=18%  Similarity=0.142  Sum_probs=59.0

Q ss_pred             HHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCC
Q 025404           28 DHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        28 ~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      ..|..|+++  |+++++ .|+.|++.|.+.+.|..  +++|.            |+.|++.|.+.+.|..|+++|++++|
T Consensus         4 ~~l~~H~~~--h~~~~~~~C~~C~k~f~~~~~l~~--~~~~~------------C~~C~~~f~~~~~l~~H~~~H~~~~~   67 (73)
T 2ctu_A            4 GSSGKRQKI--HLGDRSQKCSKCGIIFIRRSTLSR--RKTPM------------CEKCRKDSCQEAALNKDEGNESGKKT   67 (73)
T ss_dssp             CSCCCCCCC--CCCCSEEECSSSCCEEECCCCCCC--SSSCC------------CHHHHHTCSCCCSSCCCSSCCCCCCC
T ss_pred             hhHHHHHHH--hCCCCCeeCCcccchhCCHHHhCc--CCCCC------------CCCCChhhcCHHHHHHHHHhhcCCCC
Confidence            457789999  999999 99999999999988876  45554            67789999999999999999999999


Q ss_pred             CCccc
Q 025404          107 VPFEK  111 (253)
Q Consensus       107 ~~C~~  111 (253)
                      |.|..
T Consensus        68 ~~C~~   72 (73)
T 2ctu_A           68 SGPSS   72 (73)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            99863

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.20  E-value=4.8e-12  Score=88.08  Aligned_cols=59  Identities=10%  Similarity=0.053  Sum_probs=46.8

Q ss_pred             ccccccccCChHHHHHHHH-Hc---cCCCCCC---ccccCccchhhhhh-ccccccccccCCCceeeeecccccC
Q 025404           81 CNLCMNIFDSPSSLIKHKE-AC---SLSAPVP---FEKTLSNAESQKKI-SGAIDEKRTCRGPKAVAMDCEMVGG  147 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~-~h---~~~~~~~---C~~~f~~~~~l~~h-~~~~~~~r~~~~~~~~~~dcE~~g~  147 (253)
                      |+.|++.|.+.+.|..|++ +|   .+++||.   |++.|...+.|..| +..+.+.        ..+.|..+..
T Consensus        21 C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htge--------kpy~C~~~~~   87 (102)
T 2ghf_A           21 CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE--------ENFKLTMVKR   87 (102)
T ss_dssp             CSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTC--------CCEEEEECCC
T ss_pred             CCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCC--------CCeeCCcccC
Confidence            5678888999999999998 59   5689996   99999999999999 6666542        3466766443

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=1.5e-11  Score=75.33  Aligned_cols=46  Identities=35%  Similarity=0.574  Sum_probs=42.3

Q ss_pred             CCCCCCcccccccccccCCHHHHHHhhh-hcCCCCCcc-ccccccccccC
Q 025404            8 PKRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAVCQKLSKS   55 (253)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~~~-~C~~C~~~f~~   55 (253)
                      ..++++||.|+.|++.|.....|..|++ +  |+++++ .|+.|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~--H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQV--HTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHT--SCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHh--cCCCCCccCCCCCCCCCC
Confidence            4668999999999999999999999997 8  999998 99999999976

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=9.8e-12  Score=80.85  Aligned_cols=60  Identities=28%  Similarity=0.458  Sum_probs=50.8

Q ss_pred             hhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCC
Q 025404           33 HMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        33 H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      +.++  |+++++ .|+.|++.|.....|..|+     +++|.            |+.|++.|.+...|..|+++|+++.+
T Consensus         5 ~~~~--H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~------------C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            5 SSGI--HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYK------------CLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCCT--TTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEE------------CSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CCcc--cCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeE------------CCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            3566  899999 9999999999999999998     45565            56678889999999999999988743

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=4.6e-12  Score=83.53  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=14.2

Q ss_pred             ccccccccCChHHHHHHHHHccC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      |+.|++.|.+.+.|..|+++|++
T Consensus        48 C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A           48 CPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCC
Confidence            44455666666777777766443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=1.1e-11  Score=85.42  Aligned_cols=50  Identities=22%  Similarity=0.409  Sum_probs=47.5

Q ss_pred             CCCccccccccccc-CCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhh-h
Q 025404           11 STARHKCVACYKQF-KRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH-L   63 (253)
Q Consensus        11 ~~k~~~C~~C~k~f-~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H-~   63 (253)
                      +++||.|+.|++.| .....|..|+++  | ++++ .|.+|++.|.+.+.|..| +
T Consensus        31 ~~~~~~C~~C~k~F~~~~~~L~~H~~~--h-~~k~~~C~~Cgk~F~~~~~L~~H~~   83 (96)
T 2ctd_A           31 DKGSVSCPTCQAVGRKTIEGLKKHMEN--C-KQEMFTCHHCGKQLRSLAGMKYHVM   83 (96)
T ss_dssp             HTSCEECTTTCSCEESSHHHHHHHHHH--H-CCCCCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCcccCHHHHHHHHHH--H-CCCCeECCCCCCeeCCHHHHHHHhH
Confidence            36899999999999 999999999999  9 8888 999999999999999999 6

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=1.9e-11  Score=80.49  Aligned_cols=53  Identities=19%  Similarity=0.421  Sum_probs=48.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhh-hcCCCCC-cc-ccccccccccCHHHHhhhh
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVH-QP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~-~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      -++++||.|+.|++.|.....|..|++ .  |.++ ++ .|+.|++.|.+...|..|+
T Consensus        10 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~--h~~~~~~~~C~~C~~~f~~~~~L~~H~   65 (77)
T 2ct1_A           10 HSGEKPYECYICHARFTQSGTMKMHILQK--HTENVAKFHCPHCDTVIARKSDLGVHL   65 (77)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHH--SSSSCSSEECSSSSCEESSHHHHHHHH
T ss_pred             cCCCCCeECCCcCchhCCHHHHHHHHHHh--cCCCCCccCCCCCCCccCCHHHHHHHH
Confidence            457999999999999999999999997 5  8875 67 9999999999999999998

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.6e-11  Score=84.94  Aligned_cols=52  Identities=25%  Similarity=0.389  Sum_probs=49.3

Q ss_pred             CCCCcccccccccccC-CHHHHHHhhhhcCCCC-Ccc-ccccccccccCHHHHhhhh
Q 025404           10 RSTARHKCVACYKQFK-RKDHLIEHMKISYHSV-HQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~-~~~~l~~H~~~~~H~~-~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      +++++|.|+.|++.|. ....|..|+++  |++ +++ .|..|++.|.+...|..|+
T Consensus        20 ~~~~~~~C~~C~k~f~~~~~~L~~H~~~--h~~~~~~~~C~~C~k~F~~~~~L~~H~   74 (98)
T 2gqj_A           20 HERGEAVCPTCNVVTRKTLVGLKKHMEV--CQKLQDALKCQHCRKQFKSKAGLNYHT   74 (98)
T ss_dssp             TTTSCCCCTTTCCCCSSCSHHHHHHHHH--HHHHHHHHSCSSSCCCCSCHHHHHHHH
T ss_pred             ccCCCcCCCCCCCChhhhHHHHHHHHHH--HcCCCCCEECCCCCCccCCHHHHHHHH
Confidence            4689999999999999 99999999999  887 888 9999999999999999998

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=3.8e-11  Score=79.28  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=50.9

Q ss_pred             CCCCcc-cccc--ccccccCHHHHhhhh------CCCCCCCcCCcccccccccc--cccccCChHHHHHHHHHccCCCCC
Q 025404           39 HSVHQP-KCAV--CQKLSKSFESLREHL------TGPLSKAHCSGIFSDRGCNL--CMNIFDSPSSLIKHKEACSLSAPV  107 (253)
Q Consensus        39 H~~~~~-~C~~--C~~~f~~~~~l~~H~------~~~~~C~~C~~~f~~~~C~~--C~k~f~~~~~l~~H~~~h~~~~~~  107 (253)
                      .+++++ .|..  |++.|.+...|..|+      +++|.            |+.  |++.|.+.+.|..|+++|++++||
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~------------C~~~~C~k~f~~~~~L~~H~~~H~~~~~~   69 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS------------CPEPACGKSFNFKKHLKEHMKLHSDTRDY   69 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEE------------CSCTTTCCEESSHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeE------------CCCCCCcCccCCHHHHHHHHHHhCCCCCe
Confidence            356667 7775  999999999999997      34555            555  888999999999999999999999


Q ss_pred             C---ccccC
Q 025404          108 P---FEKTL  113 (253)
Q Consensus       108 ~---C~~~f  113 (253)
                      .   |++.|
T Consensus        70 ~C~~C~k~F   78 (79)
T 2dlk_A           70 ICEFSGPSS   78 (79)
T ss_dssp             SCCSSSCCC
T ss_pred             eCCCCCCCC
Confidence            7   55555

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.13  E-value=4e-11  Score=78.00  Aligned_cols=53  Identities=26%  Similarity=0.642  Sum_probs=44.9

Q ss_pred             CCCCCccccc--ccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus         9 ~~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      ..+++||.|+  .|++.|.....|..|+++  |.++++ .|+.|++.|.+.+.|..|+
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   69 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRI--HTGQKPFQCRICMRNFSRSDHLTTHI   69 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHh--hCCCCCeECCCCCchhCCHHHHHHHH
Confidence            4578899996  699999999999999998  888887 8888888888888888775

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.10  E-value=4e-11  Score=80.17  Aligned_cols=70  Identities=20%  Similarity=0.181  Sum_probs=59.1

Q ss_pred             cc--ccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccc--cccccCChHHHHHHHHHccC---CCCCCcccc
Q 025404           45 KC--AVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNL--CMNIFDSPSSLIKHKEACSL---SAPVPFEKT  112 (253)
Q Consensus        45 ~C--~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~--C~k~f~~~~~l~~H~~~h~~---~~~~~C~~~  112 (253)
                      .|  +.|++.|...+.|..|+     +++|.|            +.  |++.|.+...|..|+++|++   ..++.|++.
T Consensus         3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C------------~~~~C~~~f~~~~~l~~H~~~h~~~~C~~~~~C~~~   70 (85)
T 2j7j_A            3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC------------PHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV   70 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHHHHHTTCCEEC------------CSTTCCCEESSHHHHHHHHHHHHSEECCSCSSCCCE
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHhCCCCCeeC------------CCCCCcCccCCHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence            68  89999999999999998     566654            45  78889999999999999998   334449999


Q ss_pred             Cccchhhhhhcccc
Q 025404          113 LSNAESQKKISGAI  126 (253)
Q Consensus       113 f~~~~~l~~h~~~~  126 (253)
                      |...+.|..|++.+
T Consensus        71 f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           71 GKTWTLYLKHVAEC   84 (85)
T ss_dssp             ESSHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHhc
Confidence            99999999998543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.10  E-value=5.3e-12  Score=85.45  Aligned_cols=72  Identities=19%  Similarity=0.491  Sum_probs=61.0

Q ss_pred             Ccc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---cccc
Q 025404           42 HQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKT  112 (253)
Q Consensus        42 ~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~  112 (253)
                      ++| .|+.|++.|.+.+.|..|+     +++|.            |+.|++.|...+.|..|+++|++ .++.   |++.
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~------------C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~   67 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA------------CDICGRKFARSDERKRHRDIQHI-LPILEDKVEEL   67 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEE------------CTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCcc------------CCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHH
Confidence            356 9999999999999999998     55665            56677888999999999999985 5664   9999


Q ss_pred             Cccchhhhhhcccc
Q 025404          113 LSNAESQKKISGAI  126 (253)
Q Consensus       113 f~~~~~l~~h~~~~  126 (253)
                      |.....|..|+...
T Consensus        68 f~~~~~L~~H~~~~   81 (88)
T 1llm_C           68 LSKNYHLENEVARL   81 (88)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHH
Confidence            99999999998544

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.08  E-value=1.1e-10  Score=69.49  Aligned_cols=42  Identities=26%  Similarity=0.377  Sum_probs=39.0

Q ss_pred             CCCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccc
Q 025404            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK   51 (253)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~   51 (253)
                      ..++++||.|+.|++.|.....|..|+++  |+++++ .|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLS--HSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGG--SCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHh--cCCCCCccCCCCCC
Confidence            46789999999999999999999999999  999998 9999985

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.06  E-value=5.4e-11  Score=75.76  Aligned_cols=53  Identities=15%  Similarity=0.447  Sum_probs=45.2

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh-------CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccC
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL-------TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-------~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      |+++++ .|+.|++.|.+.++|..|+       +++|.            |+.|++.|.+.+.|..|+++|++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~------------C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP------------CPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEE------------CTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeE------------CCCCCCccCCHHHHHHHHHHHcC
Confidence            889999 9999999999999999997       12333            67788899999999999999875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=1.9e-10  Score=74.50  Aligned_cols=57  Identities=23%  Similarity=0.524  Sum_probs=50.2

Q ss_pred             CCCCCCCCCcccccc--cccccCCHHHHHHhhhhcCCCCCcc-cccc--ccccccCHHHHhhhh
Q 025404            5 AELPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL   63 (253)
Q Consensus         5 ~~~~~~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~   63 (253)
                      .....+..++|.|..  |++.|.....|..|+++  |+++++ .|..  |++.|.+...|..|+
T Consensus         8 ~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~~~C~k~f~~~~~l~~H~   69 (72)
T 2epa_A            8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT--HTGEKPFSCSWKGCERRFARSDELSRHR   69 (72)
T ss_dssp             CCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHH--HSSSCSEECCCTTCCCEESSHHHHHHHT
T ss_pred             CCCCccccCceeCCCCCCccccCCHHHHHHHHHh--cCCCCCccCCCCCCCcccCCHHHHHhHh
Confidence            344566789999988  99999999999999999  999998 9964  999999999999886

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.05  E-value=7.5e-11  Score=79.16  Aligned_cols=54  Identities=22%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHH-HccCC
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKE-ACSLS  104 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~-~h~~~  104 (253)
                      ++..++ .|++||+.|.+.++|.+|+     ++||.            |+.|+++|.+.+.|.+|++ .|++|
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~------------C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFP------------CKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEE------------CTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccC------------CCCCCCEeCCHHHHHHhCcccCcCC
Confidence            344444 6666666666666666665     33443            3445555566666666653 45444

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.8e-10  Score=74.96  Aligned_cols=58  Identities=22%  Similarity=0.430  Sum_probs=47.8

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh---C-----CCCCCCcCCcccccccccccccccCChHHHHHHHH-HccCCCCCC
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL---T-----GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKE-ACSLSAPVP  108 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~---~-----~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~-~h~~~~~~~  108 (253)
                      |+++++ .|+.|++.|.+...|..|+   .     ++|.            |+.|++.|...+.|..|++ .|.++++..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~------------C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFP------------CEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEE------------CTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccC------------CCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            889999 9999999999999999998   1     3454            6678888999999999995 566666654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.98  E-value=2.3e-10  Score=70.45  Aligned_cols=46  Identities=30%  Similarity=0.495  Sum_probs=26.0

Q ss_pred             ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHcc
Q 025404           45 KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      .|+.|++.|.+.+.|..|+     +++|.            |+.|++.|.+.+.|..|+++|+
T Consensus         6 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYK------------CEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             BCTTTCCBCSCHHHHHHHHHHHHCCCCEE------------CSSSSCEESSHHHHHHHHHHHC
T ss_pred             cCCCCcchhCChHHHHHHHHHcCCCCCcC------------CCCCcchhCCHHHHHHHHHHhc
Confidence            5666666666666666665     33443            3344555556666666666554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.97  E-value=2.8e-10  Score=70.05  Aligned_cols=49  Identities=27%  Similarity=0.501  Sum_probs=26.4

Q ss_pred             ccccccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCC
Q 025404           45 KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      .|+.|++.|.+.+.|..|+     +++|.            |+.|++.|.+.+.|..|+++|++++
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            3 ICEECGIRXKKPSMLKKHIRTHTDVRPYH------------CTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTSSCCCEE------------CSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cCCCCcCcCCCHHHHHHHHHhcCCCCCcc------------CCCCCchhcCHHHHHHHHHHhcccC
Confidence            4556666666666666655     23333            3444555555566666666555543

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=5.2e-10  Score=65.43  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=37.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQ   50 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~   50 (253)
                      .++++||+|+.|++.|.....|..|+++  |+++++ .|+.||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRS--HDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHH--HSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHH--ccCCCCCCCcCCC
Confidence            5689999999999999999999999999  999988 999886

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.4e-10  Score=72.82  Aligned_cols=51  Identities=25%  Similarity=0.431  Sum_probs=37.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc-cccccccCHHHHhhhh
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA-VCQKLSKSFESLREHL   63 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~-~C~~~f~~~~~l~~H~   63 (253)
                      .-+++||+|+.|++.|. ...|..|+++   ++++| +|+ .||+.|...+.|..|+
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~---~~~~p~~C~~~C~k~f~~~~~L~~H~   57 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ---CPRLPVACPNQCGVGTVAREDLPGHL   57 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH---CSSSEEECTTCCSCCEEETTTHHHHH
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH---cCCcCccCCcccCcccccHHHHHHHH
Confidence            34688999999999999 9999999876   45555 666 6666666666665554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=8.3e-10  Score=64.83  Aligned_cols=39  Identities=28%  Similarity=0.443  Sum_probs=35.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytn_A            7 GTGKKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCBCTTTCCBCSSHHHHHHHGGG--TSCCCCCSCCCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHhhh--cCCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 88877

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=8.2e-10  Score=64.88  Aligned_cols=39  Identities=21%  Similarity=0.284  Sum_probs=35.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2elz_A            7 GSVEKPYKCEDCGKGYNRRLNLDMHQRV--HMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHGGG--GGSCCCCCSCCC
T ss_pred             CCCCCCeeCcccCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4588999999999999999999999999  999888 88877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.91  E-value=8.3e-10  Score=64.79  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=35.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|...+.|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2el4_A            7 GTGVKPYGCSQCAKTFSLKSQLIVHQRS--HTGVKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHGGG--SSSCCCSCCTTC
T ss_pred             CCCCCceECCCCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 88877

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8e-10  Score=64.92  Aligned_cols=39  Identities=31%  Similarity=0.484  Sum_probs=35.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2emf_A            7 GTGGKHFECTECGKAFTRKSTLSMHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCCEECSSSCCEESCHHHHHHHGGG--TSCSSCSCCCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 88876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.91  E-value=9e-10  Score=64.67  Aligned_cols=39  Identities=21%  Similarity=0.301  Sum_probs=35.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em0_A            7 GMGEKTWKCRECDMCFSQASSLRLHQNV--HVGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCCCSSSCCCCSSHHHHHHHGGG--GSSSSCSCSSCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHH--cCCCCCcCCCCC
Confidence            3578999999999999999999999999  999888 88876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.5e-09  Score=63.76  Aligned_cols=39  Identities=31%  Similarity=0.423  Sum_probs=35.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytq_A            7 GAGEKPYGCSECGKAFSSKSYLIIHMRT--HSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSCBCSSSCCBCSCHHHHHHHHTT--TCCSCSSCCCCC
T ss_pred             cCCCCCcCCCccChhhCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4588999999999999999999999999  999888 88877

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.90  E-value=4.5e-10  Score=72.89  Aligned_cols=62  Identities=19%  Similarity=0.492  Sum_probs=43.5

Q ss_pred             HHHHHhhhhcCCCCCcc-ccc--cccccccCHHHHhhhh-----CCCCCCCcCCcccccccccccccccCChHHHHHHHH
Q 025404           28 DHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKE   99 (253)
Q Consensus        28 ~~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~   99 (253)
                      ..|..|.+.. |+++++ .|+  .|++.|.+...|..|+     +++|.            |+.|++.|.+.+.|..|++
T Consensus         4 ~~~~~~~~~~-~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G            4 HPMNNLLNYV-VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ------------CRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             ----CTTSCC-CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEE------------CTTTCCEESCHHHHHHHHT
T ss_pred             CCccchhhcc-CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeE------------CCCCCchhCCHHHHHHHHH
Confidence            3455555543 778888 886  5888888888888887     45555            4567778888888888888


Q ss_pred             Hcc
Q 025404          100 ACS  102 (253)
Q Consensus       100 ~h~  102 (253)
                      +|+
T Consensus        71 ~Ht   73 (73)
T 1f2i_G           71 THT   73 (73)
T ss_dssp             TCC
T ss_pred             hcC
Confidence            774

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.90  E-value=8.3e-10  Score=64.86  Aligned_cols=39  Identities=26%  Similarity=0.512  Sum_probs=34.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ +|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emk_A            7 GTGEKPYECKECGKAFSQTTHLIQHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCBCSSSCCBCSCHHHHHHHHHH--HSSCCCSSCCCC
T ss_pred             cCCCCceECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999999  998888 88876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=8.7e-10  Score=64.73  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=35.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|...+.|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ene_A            7 GTGEKPYKCNECGKVFRHNSYLSRHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHTT--TCCCCCCSCCCC
T ss_pred             CCCCCCeECCCCCchhCChHHHHHHHhh--cCCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 88877

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1e-09  Score=64.36  Aligned_cols=39  Identities=28%  Similarity=0.482  Sum_probs=34.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eop_A            7 GTGEKPHECRECGKSFSFNSQLIVHQRI--HTGENPSGPSSG   46 (46)
T ss_dssp             CCCCCSCBCTTTCCBCSSHHHHHHHHTT--TTTSCCSCCCCC
T ss_pred             cCCCCCeeCCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 88876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=9.4e-10  Score=64.55  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=34.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eoe_A            7 GTGEKPYKCNECGKVFTQNSHLANHQRI--HTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSEETTTTEECSSHHHHHHHHGG--GSCCCSCSSCCC
T ss_pred             CCCCCCeECCCcChhhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 88877

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=8.7e-10  Score=64.73  Aligned_cols=39  Identities=31%  Similarity=0.490  Sum_probs=34.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2eq0_A            7 GTGEKPYKCHECGKVFRRNSHLARHQLI--HTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCEECTTTCCEESSHHHHHHHHTT--TCCCCCSCCSCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 88876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.7e-09  Score=63.50  Aligned_cols=39  Identities=23%  Similarity=0.399  Sum_probs=35.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ +|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2epz_A            7 GTGEKPFDCIDCGKAFSDHIGLNQHRRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCTTTCCCBSSHHHHHHHHTT--TTTCCCCSSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 88876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=9.6e-10  Score=64.55  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2enc_A            7 GSGEKPFKCEECGKGFYTNSQCYSHQRS--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHH--SCCSSCCSSCCC
T ss_pred             CCCCCCcCCCCCCCcCCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4578999999999999999999999999  999988 88877

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=7.2e-10  Score=64.43  Aligned_cols=39  Identities=23%  Similarity=0.414  Sum_probs=35.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|...+.|..|+++  |+++++ .|+.|
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   44 (44)
T 2emx_A            5 SSGEKPFGCSCCEKAFSSKSYLLVHQQT--HAEEKPSGPSSG   44 (44)
T ss_dssp             CSSCCCEECSSSSCEESSHHHHHHHHHH--HTSSCSCSCCCC
T ss_pred             cCCCcCccCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 88876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=9.2e-10  Score=64.63  Aligned_cols=39  Identities=26%  Similarity=0.423  Sum_probs=34.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eml_A            7 GTGEKPYECSVCGKAFSHRQSLSVHQRI--HSGKKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHGG--GSSCCCSCSSCC
T ss_pred             cCCCCCeeCCCcCCccCCHHHHHHHHHH--hcCCCCCCCCCC
Confidence            3578999999999999999999999999  998888 88876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.6e-09  Score=63.54  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=35.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2em7_A            7 GTGEKPYKCEECGKGFICRRDLYTHHMV--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHGGG--GTTCCCSSTTCC
T ss_pred             CCCCcCccCCCccchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 88877

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1e-09  Score=64.40  Aligned_cols=39  Identities=23%  Similarity=0.389  Sum_probs=34.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eoq_A            7 GTGEKPFKCDICGKSFCGRSRLNRHSMV--HTAEKPSGPSSG   46 (46)
T ss_dssp             SSSSCSCCCSSSCCCCSSHHHHHHHHHH--TTCCCSSSCCCC
T ss_pred             CCCCCCcCCCcCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 88876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=9.6e-10  Score=64.53  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=34.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ep2_A            7 GTGEKPYECSICGKSFTKKSQLHVHQQI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHT--TSSCCSCCSCCC
T ss_pred             CCCCcCcCCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3578999999999999999999999998  999888 88876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2e-09  Score=63.05  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=35.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eq4_A            7 GTGEKLYNCKECGKSFSRAPCLLKHERL--HSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCBTTTTBCCSCHHHHHHHHHH--CCSSSCCCCCCC
T ss_pred             CCCCCCeECCCCCCccCchHHHHHHHHh--cCCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 88876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1e-09  Score=64.34  Aligned_cols=39  Identities=26%  Similarity=0.439  Sum_probs=34.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytr_A            7 GTGEKPYKCNECGKAFSQTSKLARHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCTTCCTTTCCCCSSHHHHHHHHTT--TTTCSCCCSCCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3578999999999999999999999999  998888 88877

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.88  E-value=9.4e-10  Score=64.58  Aligned_cols=39  Identities=33%  Similarity=0.520  Sum_probs=34.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ema_A            7 GTGEKRYKCNECGKVFSRNSQLSQHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CTTSCCEECSSSCCEESSHHHHHHHHTG--GGCCCCCSSSCC
T ss_pred             CCCCcCcCCCCCcchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3578999999999999999999999999  888888 88876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=9.5e-10  Score=64.56  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=35.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ysp_A            7 GTGEKPYKCEKCGKGYNSKFNLDMHQKV--HTGERPSGPSSG   46 (46)
T ss_dssp             CSSCCSEEETTTTEEESCHHHHHHHHTT--SCSCCSSCCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHh--hCCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 88877

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.1e-09  Score=64.35  Aligned_cols=39  Identities=33%  Similarity=0.563  Sum_probs=34.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em5_A            7 GSSTKSHQCHECGRGFTLKSHLNQHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSEECSSSCCEESSHHHHHHHHTT--TSCSCCSSCCCC
T ss_pred             CCCCCCeECCcCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 88877

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.88  E-value=1.2e-09  Score=64.13  Aligned_cols=39  Identities=23%  Similarity=0.437  Sum_probs=35.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|.....|..|+++  |+++++ +|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em9_A            7 GTGEKPYNCKECGKSFRWASCLLKHQRV--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHGGG--GTSCCCCSTTCC
T ss_pred             CCCCcCeECCccccccCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 88877

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.1e-09  Score=64.30  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=34.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ +|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2en8_A            7 GSGEKSHTCDECGKNFCYISALRIHQRV--HMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCSSEECTTTCCEESSHHHHHHHHTT--TCCSCSSCCSCC
T ss_pred             CCCCCCeECCCcCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3578999999999999999999999998  999888 88876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.8e-10  Score=64.68  Aligned_cols=39  Identities=33%  Similarity=0.583  Sum_probs=34.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emm_A            7 GTGERPHKCNECGKSFIQSAHLIQHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHH--HSCCCTTSSSCC
T ss_pred             cCCCCCeeCCCCChhhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3578999999999999999999999999  888888 88877

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.1e-09  Score=64.23  Aligned_cols=39  Identities=28%  Similarity=0.479  Sum_probs=34.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|.....|..|+++  |+++++ .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ytj_A            7 GTGEKPYICAECGKAFTIRSNLIKHQKI--HTKQKPSGPSSG   46 (46)
T ss_dssp             TSSCCSEECSSSCCEESSHHHHHHHHHH--TSCCCCSSCSCC
T ss_pred             CCCCcCeECCCCChhhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999999  998888 88876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=9.2e-10  Score=64.62  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=34.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emy_A            7 GTGENPYECHECGKAFSRKYQLISHQRT--HAGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHH--HTTSCCSCSSCC
T ss_pred             CCCCcCcCCCCCCcccCcHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4578999999999999999999999999  888888 88876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.87  E-value=1.9e-09  Score=63.23  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2el6_A            7 GAGVNPYKCSQCEKSFSGKLRLLVHQRM--HTREKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHGG--GCCSSCCSCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4588999999999999999999999999  999988 88877

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.9e-09  Score=63.26  Aligned_cols=40  Identities=25%  Similarity=0.404  Sum_probs=36.4

Q ss_pred             CCCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      .-++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTT--TSSSCCCSCCCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            34689999999999999999999999999  999988 89877

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.2e-09  Score=64.09  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=34.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ +|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eov_A            7 GTGEKPYKCSDCGKSFTWKSRLRIHQKC--HTGERHSGPSSG   46 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHHHH--HSCCSSCCSCCC
T ss_pred             CCCCCCccCCccChhhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3578999999999999999999999998  888888 88876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1e-09  Score=64.43  Aligned_cols=39  Identities=33%  Similarity=0.508  Sum_probs=34.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytd_A            7 GSGEKPYKCSECGKAFHRHTHLNEHRRI--HTGYRPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHH--HTCCCSSCSSCC
T ss_pred             cCCCcCeECCCCCCeeCChHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999999  998888 88876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.3e-09  Score=63.99  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=34.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2en1_A            7 GSGEKPFKCEECGKRFTQNSQLHSHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGG--GSCCCCSCCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999998  888888 88876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1e-09  Score=64.41  Aligned_cols=39  Identities=28%  Similarity=0.485  Sum_probs=34.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~c   46 (46)
T 2ytk_A            7 GSGEKPYKCNECGKVFTQNSHLTNHWRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCSEECSSSCCEESSHHHHHHHHHH--HSSSSCSSCCCC
T ss_pred             CCCCCCEeCCcCCCccCCHHHHHHHHHH--HCCCCCCCCCCC
Confidence            3578999999999999999999999999  888888 88876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.5e-09  Score=63.96  Aligned_cols=39  Identities=23%  Similarity=0.445  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhh-hcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|++ +  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~~--H~~~k~~~C~~C   47 (47)
T 2epx_A            7 GTGKKPYECIECGKAFIQNTSLIRHWRYY--HTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCSBCCSSSCCCBSSHHHHHHHHTTT--TTTSCSSSCCCC
T ss_pred             cCCCCCEECCccCchhCChHHHHHHhHhh--cCCCCCCCCCCC
Confidence            457899999999999999999999999 8  999988 88877

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.3e-09  Score=63.87  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=34.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eme_A            7 GSGEKPYVCDYCGKAFGLSAELVRHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCSEECSSSCCEESSHHHHHHHHGG--GCCCSCCSSCCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3578999999999999999999999998  988888 88877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.1e-10  Score=64.90  Aligned_cols=39  Identities=31%  Similarity=0.439  Sum_probs=33.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|...+.|..|+++  |+++++ +|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eoo_A            7 GSGERPYGCNECGKNFGRHSHLIEHLKR--HFREKSSGPSSG   46 (46)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHH--HHSTTSSCCSCC
T ss_pred             CCCCCCEEccccCcccCCHHHHHHHHHH--HcCCCCCCCCCC
Confidence            3578899999999999999999999998  888888 88776

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.6e-09  Score=63.58  Aligned_cols=39  Identities=21%  Similarity=0.407  Sum_probs=34.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytm_A            7 GTGEKPYKCMECGKAFGDNSSCTQHQRL--HTGQRPSGPSSG   46 (46)
T ss_dssp             CSSCCSSSBTTTTBCCSSHHHHHHHHHH--HHSCCCCCCCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4578999999999999999999999999  888888 88876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1e-09  Score=64.39  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2en6_A            7 GSGEKPYGCNECGKTFSQKSILSAHQRT--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEEETTTTEEESSHHHHHHHHHH--HSSCCCSSSCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHHH--cCCCCCCCCCCC
Confidence            4578999999999999999999999999  888888 88876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1e-09  Score=64.36  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=34.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2epw_A            7 GTGEKPCKCTECGKAFCWKSQLIMHQRT--HVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSSHHHHHHHHH--CCSCCCSCCCCC
T ss_pred             CCCCCCeeCCCCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3578999999999999999999999999  998888 88876

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.85  E-value=2.7e-09  Score=67.39  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=36.6

Q ss_pred             CCCCCCCCCCcccccc--cccccCCHHHHHHhh-hhcCCCCCcc-cccc
Q 025404            4 EAELPKRSTARHKCVA--CYKQFKRKDHLIEHM-KISYHSVHQP-KCAV   48 (253)
Q Consensus         4 ~~~~~~~~~k~~~C~~--C~k~f~~~~~l~~H~-~~~~H~~~~~-~C~~   48 (253)
                      +..+.-+|+|||+|..  |++.|.+.+.|..|+ ++  |++++| .|..
T Consensus        17 ~~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rri--HTgEKP~~~~~   63 (73)
T 1x3c_A           17 EFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAV--HKSDLPAFSAE   63 (73)
T ss_dssp             CCSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHH--SSSCCCCCCCS
T ss_pred             cccccccCCCCeECCCCCcChhHcCHHHHHHHhhhh--CCCCCCccccc
Confidence            4455678999999965  999999999999997 68  999999 7754

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=9.1e-10  Score=64.65  Aligned_cols=39  Identities=28%  Similarity=0.475  Sum_probs=33.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2emh_A            7 GTGERPYICTVCGKAFTDRSNLIKHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCSEECTTTCCEESSHHHHHHHHHH--HHCSSCSSSCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3578999999999999999999999998  888888 88876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.2e-09  Score=64.08  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=34.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ +|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2yso_A            7 GSREKSHQCRECGEIFFQYVSLIEHQVL--HMGQKNSGPSSG   46 (46)
T ss_dssp             SSCCCCEECTTTCCEESSHHHHHHHHHH--HSCCSCCCTTCC
T ss_pred             cCCCCCEEccccChhhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3578999999999999999999999999  898888 88876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1e-09  Score=64.44  Aligned_cols=39  Identities=23%  Similarity=0.305  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|.....|..|+++  |+++++ +|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emp_A            7 GTGVKPYMCNECGKAFSVYSSLTTHQVI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHHHH--HHCCSCCSCCCC
T ss_pred             cCCCcCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999998  888888 88876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.2e-10  Score=64.61  Aligned_cols=39  Identities=23%  Similarity=0.485  Sum_probs=33.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| +|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytg_A            7 GTGEKPFKCGECGKSYNQRVHLTQHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECTTTCCEESSSHHHHTTGGG--GSSCCSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578899999999999999999999998  888888 88876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.9e-09  Score=63.28  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=34.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em8_A            7 GSGEKPYKCVECGKGYKRRLDLDFHQRV--HTGEKLSGPSSG   46 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHHHH--HHCCCCCCSCCC
T ss_pred             CCCCCCeECcccCchhCCHHHHHHHHHH--HcCCCCCCCCCC
Confidence            4578999999999999999999999999  998888 88877

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.84  E-value=1.7e-09  Score=63.43  Aligned_cols=39  Identities=31%  Similarity=0.490  Sum_probs=34.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ +|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ely_A            7 GTGEKPFKCVECGKGFSRRSALNVHHKL--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCSSSCCCBSSTTHHHHHHHH--HSCCSSCSCCCC
T ss_pred             CCCCCCcccCccCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4578999999999999999999999999  888888 88876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.6e-10  Score=64.75  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=33.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2yu8_A            7 GTGEKPYKCNECGKVFTQNSHLARHRRV--HTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCSSEECSSSCCEESSSHHHHHHTHH--HHSCCCSCSCCC
T ss_pred             CCCCCCeECCcCCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3578899999999999999999999998  888888 88776

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.9e-09  Score=63.19  Aligned_cols=39  Identities=26%  Similarity=0.481  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~~   46 (46)
T 2ep3_A            7 GTGEKPYRCAECGKAFTDRSNLFTHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHTT--TTTSCCCCTTCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3578999999999999999999999998  988888 88765

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.9e-09  Score=63.28  Aligned_cols=39  Identities=21%  Similarity=0.337  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||.|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWIT--HTREKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTH--HHHCCCCSCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4588999999999999999999999999  999888 88877

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.80  E-value=4.6e-10  Score=70.64  Aligned_cols=49  Identities=18%  Similarity=0.348  Sum_probs=39.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhh
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (253)
                      -++++||+|+.|++.|.....|.   ++  |+++++ .|+.||+.|....++..+
T Consensus         9 H~~~k~~~C~~C~k~F~~~~~l~---~~--H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            9 STNRASFKCPVCSSTFTDLEANQ---LF--DPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHH---HE--ETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             cCCCCCccCCCCCchhccHHHhH---hh--cCCCCCEECCCCCCccccCcccccc
Confidence            35788899999999998888776   66  888888 899999888877765543

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=1.5e-09  Score=69.13  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=40.4

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh----CCCCCCCcCCccccccccc-ccccccCChHHHHHHHHHccCCCC
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL----TGPLSKAHCSGIFSDRGCN-LCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~----~~~~~C~~C~~~f~~~~C~-~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      ..++++ .|+.|++.|. .++|..|+    ++||.            |+ .||+.|...+.|..|+++|...+|
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~------------C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVA------------CPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHHCSSSEEE------------CTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHHcCCcCcc------------CCcccCcccccHHHHHHHHHhhcccCc
Confidence            345677 8888888888 88888887    33443            55 677777788888888888876654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=5.5e-09  Score=61.23  Aligned_cols=39  Identities=28%  Similarity=0.529  Sum_probs=34.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~~   46 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHH--HCCCCSSCSSCC
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4578999999999999999999999999  998888 88764

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=7.4e-09  Score=60.61  Aligned_cols=38  Identities=29%  Similarity=0.504  Sum_probs=33.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2enf_A            7 GTGEKPYKCNECGKVFTQNSHLVRHRGI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCBCSSSCCBCSSHHHHHHHHTT--TTTSSCCCCSC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHh--hCCCCCCCCCC
Confidence            3578999999999999999999999999  998888 8764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.73  E-value=4.6e-09  Score=65.24  Aligned_cols=43  Identities=16%  Similarity=0.444  Sum_probs=28.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKIS  123 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~  123 (253)
                      |+.|++.|.+.+.|..|+++|++++||.   |++.|.....|..|+
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             CCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            4556666666667777777776666664   666666666676664

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=8.6e-09  Score=59.49  Aligned_cols=38  Identities=13%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQ--THSDKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHH--HTCTTCSSSCC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHh--hCCCCCccCCC
Confidence            4689999999999999999999999999  999988 8863

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=7.9e-09  Score=58.90  Aligned_cols=36  Identities=28%  Similarity=0.481  Sum_probs=32.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERI--HTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGG--CCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHH--hCCCCCcCC
Confidence            3589999999999999999999999999  999887 66

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=6.9e-09  Score=60.80  Aligned_cols=38  Identities=32%  Similarity=0.536  Sum_probs=33.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ytp_A            7 GTGERHYECSECGKAFARKSTLIMHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT--TSCCCCCSSCC
T ss_pred             cCCCCCeECCcCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4578999999999999999999999999  998888 8763

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=3.3e-10  Score=73.36  Aligned_cols=55  Identities=20%  Similarity=0.301  Sum_probs=46.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcC
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHC   72 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C   72 (253)
                      -.+++||.|+.|++.|.....|..         +++ .|+.|++.|.+.++|..|+     +++|.|+.|
T Consensus        13 h~~~~~~~C~~C~k~f~~~~~l~~---------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           13 HLGDRSQKCSKCGIIFIRRSTLSR---------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCSEEECSSSCCEEECCCCCCC---------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hCCCCCeeCCcccchhCCHHHhCc---------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            357899999999999998776543         455 9999999999999999998     568888776

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=7.9e-09  Score=60.49  Aligned_cols=38  Identities=29%  Similarity=0.470  Sum_probs=33.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yti_A            7 GTGEKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTT--TSCSCCSSTTC
T ss_pred             CCCCcCeECCCCCcccCChhHHHHHhHh--cCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 8763

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.1e-08  Score=59.56  Aligned_cols=37  Identities=24%  Similarity=0.540  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~   44 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRI--HTGEKSGPSS   44 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTT--TSSCCCCCSC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHH--hCCCCCCCCC
Confidence            4689999999999999999999999999  999888 875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9.4e-09  Score=60.20  Aligned_cols=38  Identities=24%  Similarity=0.520  Sum_probs=33.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGG--GTTCCCSSCCC
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            3578999999999999999999999999  998888 8763

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=8.7e-09  Score=60.31  Aligned_cols=38  Identities=32%  Similarity=0.479  Sum_probs=33.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ +|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~   45 (46)
T 2emg_A            7 GTGENPFICSECGKVFTHKTNLIIHQKI--HTGERPSGPSS   45 (46)
T ss_dssp             CCSCCSCBCTTTCCBCSSHHHHHHHHTT--TSCCCCSCSCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 8763

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.71  E-value=7.5e-09  Score=59.28  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=32.2

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      ++++||+|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   42 (42)
T 2el5_A            6 SGENPYECSECGKAFNRKDQLISHQRT--HAGESGPSSG   42 (42)
T ss_dssp             SSCCSEECSSSCCEESSHHHHHHHHGG--GCCCCSCCCC
T ss_pred             CCCCCccCCCcChhhCCHHHHHHHHHh--cCCCCCCCCC
Confidence            578999999999999999999999999  998887 773

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9.5e-09  Score=60.17  Aligned_cols=38  Identities=26%  Similarity=0.480  Sum_probs=33.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2em6_A            7 GMGEKCYKCDVCGKEFSQSSHLQTHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHTT--TSSSCCCCTTC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 8863

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9.5e-09  Score=58.81  Aligned_cols=35  Identities=23%  Similarity=0.563  Sum_probs=31.9

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (253)
                      ++++||+|+.|++.|...+.|..|+++  |+++++ .|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   41 (42)
T 2yte_A            6 SGEKPYSCAECKETFSDNNRLVQHQKM--HTVKSGPSS   41 (42)
T ss_dssp             CSCCSCBCTTTCCBCSSHHHHHHHHHH--TSCCSSCCC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHH--hCCCCCCCC
Confidence            578999999999999999999999999  998887 76

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=8.8e-09  Score=60.29  Aligned_cols=38  Identities=21%  Similarity=0.436  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq2_A            7 GTGGKPYQCNECGKAFSQTSKLARHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             SSSSCSSSCCSSCCCCSSHHHHHHHGGG--GCCCCCCCCCC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3578999999999999999999999999  988888 7753

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.4e-08  Score=59.48  Aligned_cols=38  Identities=29%  Similarity=0.532  Sum_probs=33.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eon_A            7 GTGEKPYKCQVCGKAFRVSSHLVQHHSV--HSGERPSGPSS   45 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHTTT--TTSCCSCTTSC
T ss_pred             CCCCcccCCCCCCcccCcHHHHHHHHHh--cCCCCCCCCCC
Confidence            4578999999999999999999999999  999888 8863

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=8e-09  Score=60.43  Aligned_cols=38  Identities=26%  Similarity=0.504  Sum_probs=33.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ytf_A            7 GTGEKPFECSECQKAFNTKSNLIVHQRT--HTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHT--SCSSSSSCCCC
T ss_pred             CCCCCCcCCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3578999999999999999999999999  999888 8864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=8.9e-09  Score=60.24  Aligned_cols=38  Identities=29%  Similarity=0.456  Sum_probs=33.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~p~~C~~   45 (46)
T 2yts_A            7 GTGEKPYICNECGKSFIQKSHLNRHRRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHGGG--TSSCCSSCCCC
T ss_pred             CCCCcCEECCCCChhhCChHHHHHHHHh--cCCCCCcCCCC
Confidence            3578999999999999999999999999  998888 8764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=7e-09  Score=60.76  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=33.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2em4_A            7 GTGQRPYECIECGKAFKTKSSLICHRRS--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHHH--HSSSSCCCCCC
T ss_pred             cCCCcCcCCCCCCCccCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            4578999999999999999999999999  998888 8763

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.70  E-value=6.8e-09  Score=60.81  Aligned_cols=38  Identities=24%  Similarity=0.459  Sum_probs=33.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| +|++
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2emj_A            7 GTGEKPFECAECGKSFSISSQLATHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHHH--HTTSCSSSSCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4578999999999999999999999999  998888 8764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.1e-08  Score=59.96  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=33.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2eoh_A            7 GSGKKPYECKECRKTFIQIGHLNQHKRV--HTGERSSGPS   44 (46)
T ss_dssp             CCCSCSCCCSSSCCCCSSHHHHHHHHHH--CSSCCSCSTT
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            4578999999999999999999999999  999888 775

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1e-08  Score=58.75  Aligned_cols=36  Identities=22%  Similarity=0.448  Sum_probs=32.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (253)
                      -++++||+|+.|++.|...+.|..|+++  |++++| +|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2eos_A            6 SGGEKPYPCEICGTRFRHLQTLKSHLRI--HTGSGPSSG   42 (42)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHTTT--TSCCSSTTC
T ss_pred             cCCCCCEECCCCCCccCCHHHHHHHHHh--cCCCCCCCC
Confidence            3578999999999999999999999999  998887 65

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.5e-08  Score=59.32  Aligned_cols=38  Identities=26%  Similarity=0.538  Sum_probs=34.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHH--HSSCCCSSCCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHH--hCCCCCCCCCC
Confidence            4589999999999999999999999999  999888 8863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.7e-09  Score=60.61  Aligned_cols=39  Identities=26%  Similarity=0.389  Sum_probs=35.7

Q ss_pred             CCCCCccccc--ccccccCCHHHHHHhhhhcCCCCCcc-ccccc
Q 025404            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (253)
Q Consensus         9 ~~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (253)
                      -++++||+|.  .|++.|.....|..|+++  |+++++ +|..|
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRS--HSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTT--SCCCCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4579999998  899999999999999999  999998 99877

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.3e-09  Score=60.21  Aligned_cols=38  Identities=26%  Similarity=0.466  Sum_probs=33.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2en9_A            7 GAGKKLFKCNECKKTFTQSSSLTVHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCBCTTTCCBCSSHHHHHHHHHH--HTSSCCCSCCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            4578999999999999999999999999  998888 8763

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.6e-09  Score=59.46  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=32.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ +|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2eoj_A            7 GTGENPYECCECGKVFSRKDQLVSHQKT--HSGQSGPSSG   44 (44)
T ss_dssp             SSSCCSCEETTTTEECSSHHHHHHHHTT--SSSSCSCCCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHH--cCCCCCCCCC
Confidence            3578999999999999999999999998  888887 774

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.6e-09  Score=60.13  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=33.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+.
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2emi_A            7 GTGERHYECSECGKAFIQKSTLSMHQRI--HRGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCEECSSSCCEESSHHHHHHHHGG--GCSCCCCSCCC
T ss_pred             cCCCCCCCCCCCCcccCCHHHHHHHHhH--hCCCCCCCCCC
Confidence            4578999999999999999999999999  998888 7753

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.1e-08  Score=59.80  Aligned_cols=38  Identities=26%  Similarity=0.446  Sum_probs=33.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ep1_A            7 GTGEKPYECSDCGKSFIKKSQLHVHQRI--HTGENPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCSSSCCCCSSHHHHHHHHGG--GSSSCCCSSSC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3578999999999999999999999999  998888 8763

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.1e-08  Score=59.83  Aligned_cols=38  Identities=26%  Similarity=0.440  Sum_probs=33.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq1_A            7 GTGEKPYKCNECGKAFRAHSNLTTHQVI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCTTTTCCCSSHHHHHHHHTT--TCCSCCSSCCC
T ss_pred             cCCCCCeECCcCChhhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3578999999999999999999999998  998888 8763

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.68  E-value=1e-08  Score=58.65  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=32.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|
T Consensus         6 H~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~k~~~C   42 (42)
T 2epc_A            6 SGGETPYLCGQCGKSFTQRGSLAVHQRS--CSQSGPSSG   42 (42)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHH--TTCCCCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHhhh--cCCCCCCCC
Confidence            3578999999999999999999999999  998887 66

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1e-08  Score=58.64  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=31.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2ytb_A            6 SGGEKPYRCDQCGKAFSQKGSLIVHIRV--HTGSGPSSG   42 (42)
T ss_dssp             CCSCCSBCCTTTTCCBSSHHHHHTTGGG--TSCCSCCCC
T ss_pred             cCCCCCeeCCCccchhCCHHHHHHHHHH--hCCCCCCCC
Confidence            3578999999999999999999999999  988887 65

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=9.9e-09  Score=57.62  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=29.4

Q ss_pred             CCCCCcccccc--cccccCCHHHHHHhhhhcCCCCC
Q 025404            9 KRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus         9 ~~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      .+++|||+|+.  |++.|.+++.|..|+++  |+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~--Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKV--HTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHH--HSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh--cCCC
Confidence            56899999986  99999999999999999  9875

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.8e-08  Score=58.94  Aligned_cols=38  Identities=24%  Similarity=0.458  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||.|+.|++.|.....|..|+++  |+++++ .|+.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2enh_A            7 GTGEKPYECDVCRKAFSHHASLTQHQRV--HSGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSCBCTTTCCBCSSSHHHHHHGGG--SCCSCCCCCCC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4688999999999999999999999999  999888 8753

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=8.7e-09  Score=60.27  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eow_A            7 GTGEKPYKCNECGKAFRARSSLAIHQAT--HSGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECTTSCCEESSHHHHHHHHHH--HCCCSCSCTTC
T ss_pred             CCCCCCeeccccCChhcCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3578999999999999999999999998  888888 8763

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.1e-08  Score=59.85  Aligned_cols=38  Identities=26%  Similarity=0.488  Sum_probs=33.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yrj_A            7 GTGEKPYRCGECGKAFAQKANLTQHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHTT--TSSCCSSCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3578999999999999999999999998  998888 8763

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.2e-08  Score=59.02  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=32.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||.|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2en7_A            7 GTGMKPYVCNECGKAFRSKSYLIIHTRT--HTGESGPSSG   44 (44)
T ss_dssp             SSSSSSSCCTTTCCCCSSHHHHHHHHTT--TCCSSSSCCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHhhh--cCCCCCCCCC
Confidence            3578999999999999999999999998  998887 774

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=2.4e-08  Score=68.02  Aligned_cols=65  Identities=12%  Similarity=0.000  Sum_probs=54.1

Q ss_pred             CCCCCCcCCcccccccccccccccCChHHHHHHHHH-ccCCCC--------CC---ccccCccchhhhhhccccccc
Q 025404           65 GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEA-CSLSAP--------VP---FEKTLSNAESQKKISGAIDEK  129 (253)
Q Consensus        65 ~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~-h~~~~~--------~~---C~~~f~~~~~l~~h~~~~~~~  129 (253)
                      ..+.|...+..+....|+.|++.|.....|..|+++ |.++++        |.   |++.|.....|..|+..|.+.
T Consensus        12 ~~~~c~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~   88 (95)
T 2ej4_A           12 QELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE   88 (95)
T ss_dssp             CCCCCCCCCSSCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTC
T ss_pred             CCceeEeecCCcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCC
Confidence            456676666666666799999999999999999998 988887        65   889999999999999877653

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.1e-08  Score=59.10  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=32.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2eof_A            7 GTGEKPYECNECQKAFNTKSNLMVHQRT--HTGESGPSSG   44 (44)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHH--TTTSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHhHHHHHHHH--hCCCCCCCCC
Confidence            3578999999999999999999999999  998887 774

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=8.6e-09  Score=60.34  Aligned_cols=38  Identities=29%  Similarity=0.517  Sum_probs=33.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~   45 (46)
T 2em3_A            7 GTGEKPYECKVCSKAFTQKAHLAQHQKT--HTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHHH--HCCCCCCCSCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3578999999999999999999999999  888888 7764

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.4e-08  Score=58.85  Aligned_cols=37  Identities=27%  Similarity=0.566  Sum_probs=32.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2emb_A            7 GHTRKRYECSKCQATFNLRKHLIQHQKT--HAAKSGPSSG   44 (44)
T ss_dssp             CCCCSSEECTTTCCEESCHHHHHHHGGG--GCCCCCTTCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHH--cCCCCCcCCC
Confidence            3578999999999999999999999999  998888 774

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.2e-08  Score=59.74  Aligned_cols=30  Identities=27%  Similarity=0.475  Sum_probs=17.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytn_A           15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CTTTCCBCSSHHHHHHHGGGTSCCCCCSCC
T ss_pred             CCCCCCeeCCHHHHHHHhhhcCCCCCCCCC
Confidence            344555555666666666666666666654

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=9.7e-09  Score=59.49  Aligned_cols=30  Identities=27%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (44)
T 2emx_A           13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGPS   42 (44)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445566666777777777777777777765

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.1e-08  Score=59.86  Aligned_cols=29  Identities=21%  Similarity=0.246  Sum_probs=15.1

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emf_A           16 TECGKAFTRKSTLSMHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SSSCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred             CCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444455555555555555555555543

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=8.3e-09  Score=59.10  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=31.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLI--HTGSGPSSG   42 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHH--HHSCCSSCC
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHH--cCCCCCCCC
Confidence            3578999999999999999999999998  888877 65

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.1e-08  Score=59.82  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=32.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQS--HTGERHSGPS   44 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHH--HTCCCBTTTB
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHH--cCCCCCCCCC
Confidence            3578999999999999999999999999  888888 876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.2e-08  Score=59.61  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=22.0

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eq4_A           15 CKECGKSFSRAPCLLKHERLHSGEKPSGPSS   45 (46)
T ss_dssp             BTTTTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred             CCCCCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence            4456666777777777777777777777753

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.4e-08  Score=59.49  Aligned_cols=29  Identities=10%  Similarity=-0.002  Sum_probs=17.2

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2elz_A           16 EDCGKGYNRRLNLDMHQRVHMGEKTSGPS   44 (46)
T ss_dssp             SSSCCBCSSHHHHHHHGGGGGSCCCCCSC
T ss_pred             cccCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            34455555666666666666666666654

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.2e-08  Score=59.63  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=18.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||+|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epz_A           15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CTTTCCCBSSHHHHHHHHTTTTTCCCCSSC
T ss_pred             CCCCCceeCCHHHHHHHHHHhCCCCCCCCC
Confidence            344555666666666666666666666664

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.1e-08  Score=59.77  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=19.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emm_A           15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSCCCTTSSS
T ss_pred             CCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344555666666666777777777776664

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.65  E-value=1.3e-08  Score=59.59  Aligned_cols=31  Identities=23%  Similarity=0.444  Sum_probs=22.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||+|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emk_A           15 CKECGKAFSQTTHLIQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCBCSCHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4456667777777888888888888887753

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.2e-08  Score=59.70  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=16.5

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eml_A           16 SVCGKAFSHRQSLSVHQRIHSGKKPSGPS   44 (46)
T ss_dssp             SSSCCEESSHHHHHHHHGGGSSCCCSCSS
T ss_pred             CCcCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            34445555555666666666666666554

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.65  E-value=1.3e-08  Score=59.53  Aligned_cols=29  Identities=24%  Similarity=0.204  Sum_probs=17.9

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|+
T Consensus        16 ~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em0_A           16 RECDMCFSQASSLRLHQNVHVGEKPSGPS   44 (46)
T ss_dssp             SSSCCCCSSHHHHHHHGGGGSSSSCSCSS
T ss_pred             CCCCcccCCHHHHHHHHHHcCCCCCcCCC
Confidence            34555556666666666666666666654

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.2e-08  Score=59.72  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=15.6

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ene_A           16 NECGKVFRHNSYLSRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSCCEESSHHHHHHHHTTTCCCCCCSCC
T ss_pred             CCCCchhCChHHHHHHHhhcCCCCCCCCC
Confidence            33444555555555555555555555554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.2e-08  Score=59.68  Aligned_cols=30  Identities=30%  Similarity=0.530  Sum_probs=18.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emh_A           15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHHCSSCSSSC
T ss_pred             CCCCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            344555556666666666666666666654

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.7e-09  Score=60.06  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=32.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|++
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~kp~~C~~   45 (46)
T 2eor_A            7 GTGEKPYNCEECGKAFIHDSQLQEHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECTTTCCEESSHHHHHHHHHH--HHSCCCSSSTT
T ss_pred             cCCCcCccCCCCCCCcCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            3578899999999999999999999998  888887 7753

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.5e-08  Score=59.29  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=17.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eop_A           15 CRECGKSFSFNSQLIVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CTTTCCBCSSHHHHHHHHTTTTTSCCSCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            334555555666666666666666666654

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.65  E-value=1.2e-08  Score=59.62  Aligned_cols=30  Identities=27%  Similarity=0.465  Sum_probs=17.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ema_A           15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTGGGCCCCCSSS
T ss_pred             CCCCcchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            334455555566666666666666666654

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.4e-08  Score=58.85  Aligned_cols=37  Identities=24%  Similarity=0.462  Sum_probs=32.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||.|+.|++.|.....|..|+++  |+++++ +|+
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQAL--HAGESGPSSG   44 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHH--HTTSCCCCCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHH--HCCCCCCCCC
Confidence            3578999999999999999999999999  998888 774

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.3e-08  Score=59.52  Aligned_cols=30  Identities=23%  Similarity=0.402  Sum_probs=19.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emy_A           15 CHECGKAFSRKYQLISHQRTHAGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHTTSCCSCSS
T ss_pred             CCCCCcccCcHHHHHHHHHHcCCCCCCCCC
Confidence            444556666666777777777777777665

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.1e-08  Score=59.81  Aligned_cols=37  Identities=22%  Similarity=0.388  Sum_probs=32.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (46)
T 2eoz_A            7 GTGEKPYSCNVCGKAFVLSAHLNQHLRV--HTQETLSGPS   44 (46)
T ss_dssp             CSSCCSEEETTTTEEESSHHHHHHHHHH--HSSCCSSSCC
T ss_pred             CCCCCCeECcccChhhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            3578899999999999999999999998  888887 775

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.5e-08  Score=59.32  Aligned_cols=30  Identities=33%  Similarity=0.403  Sum_probs=19.1

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytq_A           15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPS   44 (46)
T ss_dssp             CSSSCCBCSCHHHHHHHHTTTCCSCSSCCC
T ss_pred             CCccChhhCChHHHHHHHHHhCCCCCCCCC
Confidence            344555666666666666666666666664

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.6e-08  Score=59.08  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=32.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||.|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2eq3_A            7 GTGEKPYECNQCGKAFSVRSSLTTHQAI--HTGKKPSGPS   44 (46)
T ss_dssp             SCCCCSSEETTTTEECSSHHHHHHHHTT--SCCCCCCCSC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            3578999999999999999999999998  988888 775

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.1e-08  Score=59.85  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=33.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCC-Ccc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSV-HQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~-~~~-~C~   47 (253)
                      -++++||.|+.|++.|.....|..|+++  |++ +++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~~C~   45 (46)
T 2eoy_A            7 GQKEKCFKCNKCEKTFSCSKYLTQHERI--HTRGVKSGPSS   45 (46)
T ss_dssp             CCCSCCEECSSSCCEESSSHHHHHHHTT--CCSCCTTSSSC
T ss_pred             cCCCCCEECcCCCCcCCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            4588999999999999999999999999  998 888 885

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.4e-08  Score=59.37  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=17.1

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytr_A           16 NECGKAFSQTSKLARHQRIHTGEKPSGPS   44 (46)
T ss_dssp             TTTCCCCSSHHHHHHHHTTTTTCSCCCSC
T ss_pred             CCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            34455555666666666666666666654

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.3e-08  Score=59.56  Aligned_cols=29  Identities=21%  Similarity=0.285  Sum_probs=16.4

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq0_A           16 HECGKVFRRNSHLARHQLIHTGEKPSGPS   44 (46)
T ss_dssp             TTTCCEESSHHHHHHHHTTTCCCCCSCCS
T ss_pred             CCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            34445555555566666666666666554

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.2e-08  Score=59.66  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=18.0

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.||+.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoo_A           15 CNECGKNFGRHSHLIEHLKRHFREKSSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHSTTSSCCS
T ss_pred             ccccCcccCCHHHHHHHHHHHcCCCCCCCC
Confidence            344555556666666666666666666654

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.64  E-value=1.4e-08  Score=59.42  Aligned_cols=29  Identities=24%  Similarity=0.330  Sum_probs=15.4

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|+
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2el4_A           16 SQCAKTFSLKSQLIVHQRSHTGVKPSGPS   44 (46)
T ss_dssp             SSSSCEESSHHHHHHHGGGSSSCCCSCCT
T ss_pred             CCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444555555555555555555555554

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.4e-08  Score=59.30  Aligned_cols=30  Identities=20%  Similarity=0.194  Sum_probs=20.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eov_A           15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPS   44 (46)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHHSCCSSCCSC
T ss_pred             CCccChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            444566666777777777777777777765

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.3e-08  Score=59.45  Aligned_cols=30  Identities=27%  Similarity=0.441  Sum_probs=19.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoe_A           15 CNECGKVFTQNSHLANHQRIHTGVKPSGPS   44 (46)
T ss_dssp             ETTTTEECSSHHHHHHHHGGGSCCCSCSSC
T ss_pred             CCCcChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            444556666666666666667777766664

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.4e-08  Score=59.39  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=22.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A           15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4456666777777888888888888887753

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.5e-08  Score=59.23  Aligned_cols=30  Identities=30%  Similarity=0.470  Sum_probs=20.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytj_A           15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTSCCCCSSCS
T ss_pred             CCCCChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            444556666677777777777777777765

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.4e-08  Score=59.34  Aligned_cols=30  Identities=20%  Similarity=0.243  Sum_probs=17.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em7_A           15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESCHHHHHHHGGGGTTCCCSSTT
T ss_pred             CCCccchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            334455555566666666666666666654

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.7e-08  Score=59.04  Aligned_cols=29  Identities=28%  Similarity=0.345  Sum_probs=15.2

Q ss_pred             hhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404           33 HMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        33 H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      |+++  |+++++ .|+.|++.|.+.++|..|+
T Consensus         3 H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2en1_A            3 SGSS--GSGEKPFKCEECGKRFTQNSQLHSHQ   32 (46)
T ss_dssp             STTC--CCCCCSEEETTTTEEESSHHHHHHHG
T ss_pred             cccC--CCCCCCeeCCCCCcccCCHHHHHHHH
Confidence            5555  666555 5555555554444444444

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=2.4e-08  Score=60.66  Aligned_cols=39  Identities=26%  Similarity=0.254  Sum_probs=22.7

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh------CCCCCCCcCCcccc
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL------TGPLSKAHCSGIFS   77 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~------~~~~~C~~C~~~f~   77 (253)
                      |+++++ .|+.|++.|.+...|..|+      +++|.|..|++.|.
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence            555555 6666666666666666664      34555555555554

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.7e-08  Score=59.11  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytm_A           15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS   44 (46)
T ss_dssp             BTTTTBCCSSHHHHHHHHHHHHSCCCCCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            445666677777777777777777777765

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.4e-08  Score=59.41  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytk_A           15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSSSSCSSCC
T ss_pred             CCcCCCccCCHHHHHHHHHHHCCCCCCCCC
Confidence            344556666666677777777777777664

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.63  E-value=1.5e-08  Score=59.28  Aligned_cols=28  Identities=29%  Similarity=0.310  Sum_probs=14.2

Q ss_pred             ccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      .|++.|.+.+.|..|+++|++++||+|.
T Consensus        17 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em9_A           17 ECGKSFRWASCLLKHQRVHSGEKPSGPS   44 (46)
T ss_dssp             SSCCEESSHHHHHHHGGGGTSCCCCSTT
T ss_pred             ccccccCChHHHHHHHHHhCCCCCCCCC
Confidence            3444444555555555555555555543

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.3e-08  Score=59.47  Aligned_cols=30  Identities=30%  Similarity=0.375  Sum_probs=19.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emp_A           15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESCHHHHHHHHHHHHCCSCCSCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            344555666666666777777777776664

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.4e-08  Score=59.42  Aligned_cols=29  Identities=21%  Similarity=0.178  Sum_probs=15.6

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em5_A           16 HECGRGFTLKSHLNQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSCCEESSHHHHHHHHTTTSCSCCSSCC
T ss_pred             CcCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444555555555555555555555554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.3e-08  Score=59.54  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=22.3

Q ss_pred             hhhhcCCCCCcc-ccccccccccCHHHHhhhh-----CCCCCCCcC
Q 025404           33 HMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHC   72 (253)
Q Consensus        33 H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C   72 (253)
                      |+++  |+++++ .|+.|++.|.+.+.|..|+     ++||.|+.|
T Consensus         3 H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSS--GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCC--CSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCC--CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5666  666666 6666666666666665555     345555443

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.3e-08  Score=58.92  Aligned_cols=37  Identities=19%  Similarity=0.467  Sum_probs=31.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2yu5_A            7 GAGENPFKCSKCDRVFTQRNYLVQHERT--HARKSGPSSG   44 (44)
T ss_dssp             CSCCCSEECSSSSCEESSSHHHHHHHHH--CCCCCSSCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHhHh--cCCCCCCCCC
Confidence            3578999999999999999999999999  888887 763

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.5e-08  Score=59.25  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=18.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep2_A           15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHTTSSCCSCCSC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344555566666666666666666666664

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.63  E-value=1.2e-08  Score=59.79  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=22.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ely_A           15 CVECGKGFSRRSALNVHHKLHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCCBSSTTHHHHHHHHHSCCSSCSCCC
T ss_pred             cCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4456667777778888888888888887753

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.5e-08  Score=59.30  Aligned_cols=29  Identities=17%  Similarity=0.169  Sum_probs=15.2

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ysp_A           16 EKCGKGYNSKFNLDMHQKVHTGERPSGPS   44 (46)
T ss_dssp             TTTTEEESCHHHHHHHHTTSCSCCSSCCS
T ss_pred             CCCCCccCCHHHHHHHHHhhCCCCCCCCC
Confidence            34444555555555555555555555543

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.3e-08  Score=59.54  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=16.4

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2yu8_A           16 NECGKVFTQNSHLARHRRVHTGGKPSGPS   44 (46)
T ss_dssp             SSSCCEESSSHHHHHHTHHHHSCCCSCSC
T ss_pred             CcCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            34445555555566666666666666554

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.62  E-value=7.7e-09  Score=62.91  Aligned_cols=28  Identities=21%  Similarity=0.511  Sum_probs=22.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~  108 (253)
                      |+.||+.|.+.+.|..|+++|++++||.
T Consensus        27 C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A           27 CPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4557777888888999999999988863

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.62  E-value=2.2e-08  Score=54.66  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (253)
                      ++++||.|+.|++.|.....|..|+++  |++++|
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~kp   35 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIRE--VHGAAQ   35 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHH--TSCTTC
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHH--HcCCCC
Confidence            478999999999999999999999999  888764

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.6e-08  Score=59.10  Aligned_cols=30  Identities=20%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytd_A           15 CSECGKAFHRHTHLNEHRRIHTGYRPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHTCCCSSCSS
T ss_pred             CCCCCCeeCChHHHHHHHHHcCCCCCCCCC
Confidence            444556666677777777777777777765

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.7e-08  Score=59.05  Aligned_cols=30  Identities=27%  Similarity=0.396  Sum_probs=19.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en6_A           15 CNECGKTFSQKSILSAHQRTHTGEKPSGPS   44 (46)
T ss_dssp             ETTTTEEESSHHHHHHHHHHHSSCCCSSSC
T ss_pred             CCCCCcccCchHHHHHHHHHcCCCCCCCCC
Confidence            445556666666677777777777777665

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.7e-08  Score=59.01  Aligned_cols=29  Identities=17%  Similarity=0.355  Sum_probs=16.6

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||.|.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eme_A           16 DYCGKAFGLSAELVRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSCCEESSHHHHHHHHGGGCCCSCCSSC
T ss_pred             CCCChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            34445555555666666666666666554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.7e-08  Score=58.96  Aligned_cols=29  Identities=17%  Similarity=-0.010  Sum_probs=15.7

Q ss_pred             cccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      +.|++.|.+.+.|..|+++|++++||+|.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en8_A           16 DECGKNFCYISALRIHQRVHMGEKCSGPS   44 (46)
T ss_dssp             TTTCCEESSHHHHHHHHTTTCCSCSSCCS
T ss_pred             CCcCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444555555555555555555555554

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.2e-08  Score=59.75  Aligned_cols=37  Identities=30%  Similarity=0.555  Sum_probs=31.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2emz_A            7 GSGERPFKCNECGKGFGRRSHLAGHLRL--HSREKSSGPS   44 (46)
T ss_dssp             SSCCCSCCCSSSCCCCSSHHHHHHHHHH--HHHTTCCCSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--hCCCCCCCCC
Confidence            3578899999999999999999999998  888887 775

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.61  E-value=2.4e-08  Score=54.59  Aligned_cols=33  Identities=21%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (253)
                      ++++||+|+.|++.|.....|..|+++  |++++|
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~   35 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLKV--HTDTLS   35 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGG--GTSCCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHH--cCCCCC
Confidence            578999999999999999999999999  888764

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.8e-08  Score=58.92  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2enc_A           15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred             CCCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence            444556666677777777777777777765

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.9e-08  Score=58.82  Aligned_cols=30  Identities=27%  Similarity=0.245  Sum_probs=19.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||+|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yso_A           15 CRECGEIFFQYVSLIEHQVLHMGQKNSGPS   44 (46)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred             ccccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444556666667777777777777777664

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.60  E-value=2.6e-08  Score=56.00  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=30.9

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (253)
                      ++++||.|+.|++.|...+.|..|+++  |+++++
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~   34 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNV--HRRDRA   34 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHT--TCCSCT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHH--cCCCcc
Confidence            478999999999999999999999999  999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.6e-08  Score=59.13  Aligned_cols=30  Identities=23%  Similarity=0.236  Sum_probs=20.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.||+.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epw_A           15 CTECGKAFCWKSQLIMHQRTHVDDKHSGPS   44 (46)
T ss_dssp             CSSSCCEESSSHHHHHHHHHCCSCCCSCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444566666777777777777777777765

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.1e-08  Score=58.66  Aligned_cols=30  Identities=13%  Similarity=0.066  Sum_probs=19.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em8_A           15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred             CcccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            444556666666777777777777777664

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.9e-08  Score=57.47  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~~   43 (44)
T 2epv_A            7 GSGEKPYECNECGKAFIWKSLLIVHERT--HAGVSGPSS   43 (44)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHGG--GSSCSCCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHhH--hcCCCCCCC
Confidence            4578999999999999999999999999  988877 54

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.4e-08  Score=55.35  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=30.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--h~~~kp   37 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKT--NHPEVS   37 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHH--HCSSCC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHH--HcCCCC
Confidence            3578999999999999999999999999  888764

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.4e-08  Score=58.39  Aligned_cols=30  Identities=23%  Similarity=0.402  Sum_probs=18.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A           15 CAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            344555566666666666666666666664

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.58  E-value=2.4e-08  Score=58.43  Aligned_cols=30  Identities=20%  Similarity=0.399  Sum_probs=18.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2el6_A           15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS   44 (46)
T ss_dssp             CSSSSCEESSHHHHHHHHGGGCCSSCCSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344555666666666666666666666664

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.58  E-value=4.3e-09  Score=66.08  Aligned_cols=47  Identities=17%  Similarity=0.303  Sum_probs=37.0

Q ss_pred             HHHhhhhcCCCCCcc-ccccccccccCHHHHh-hhh-CCCCCCCcCCccccc
Q 025404           30 LIEHMKISYHSVHQP-KCAVCQKLSKSFESLR-EHL-TGPLSKAHCSGIFSD   78 (253)
Q Consensus        30 l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~-~H~-~~~~~C~~C~~~f~~   78 (253)
                      |..|+++  |++++| .|+.||+.|.+.+.|. .|. ++||.|..|++.|..
T Consensus         2 L~~h~~~--H~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~   51 (62)
T 1vd4_A            2 IETDERD--STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE   51 (62)
T ss_dssp             CCCCSSS--CCSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred             hhhHHHH--cCCCCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence            4568888  999999 9999999999988885 222 678888877777754

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.57  E-value=4.9e-08  Score=61.68  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=30.5

Q ss_pred             CCCCCCCcCCcccccccccccccccCChHHHHHHH-HHccCCCCCCcc
Q 025404           64 TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHK-EACSLSAPVPFE  110 (253)
Q Consensus        64 ~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~-~~h~~~~~~~C~  110 (253)
                      ++||.|.          .+.|+++|.+.++|..|+ ++|++++||.|.
T Consensus        25 EKPYkC~----------~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           25 YRPYRCV----------HQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SCSCBCC----------STTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             CCCeECC----------CCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            5677763          245899999999999998 689999999875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=4.3e-08  Score=55.95  Aligned_cols=30  Identities=17%  Similarity=0.443  Sum_probs=26.0

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||+|+
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A           13 CAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566778888899999999999999999886

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.5e-08  Score=59.22  Aligned_cols=36  Identities=19%  Similarity=0.410  Sum_probs=29.6

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      ++++||.|+.|++.|.....|..|+++  |+++++ .|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~   44 (46)
T 2en3_A            8 TGEKPFQCKECGMNFSWSCSLFKHLRS--HERTDPSGPS   44 (46)
T ss_dssp             CCCCSEECSSSCCEESSSHHHHHHHHH--HHHSCCSSCS
T ss_pred             CCCCCeeCcccChhhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            478888888888888888888888888  887777 664

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.7e-08  Score=58.41  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=30.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++| .|
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C   43 (44)
T 2eox_A            7 GTDSKSYNCNECGKAFTRIFHLTRHQKI--HTRKSGPSS   43 (44)
T ss_dssp             CCCCCCEEETTTTEEESSSHHHHTTHHH--HCCCCCCSC
T ss_pred             CCCCCCeECcccCcccCCHHHHHHHHHH--hCCCCCCCC
Confidence            3578889999999999999999999988  888777 66

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.54  E-value=1e-08  Score=69.15  Aligned_cols=42  Identities=14%  Similarity=0.355  Sum_probs=37.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCcc-cccccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKL   52 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~   52 (253)
                      -++++||.|+.|++.|.....|..|+++  |++++| +|..|.+.
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~--Ht~ekp~~C~~~~~~   62 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNI--HNEEFQKRAKRQERR   62 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHH--HHHHHHHHCCCCSCC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHH--hCCCCCcccchhhhH
Confidence            4579999999999999999999999999  999999 99877543

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=4.3e-08  Score=57.27  Aligned_cols=31  Identities=19%  Similarity=0.275  Sum_probs=22.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A           15 CKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556667777778888888888888887753

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=5e-08  Score=57.18  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             ccccccccCChHHHHHHHH-HccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKE-ACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~-~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|++ +|++++||.|..
T Consensus        15 C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A           15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             CCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            4456667777777888887 788888887753

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=6.3e-08  Score=53.27  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      -++++||+|+.|++.|.....|..|+++  |++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLV--HGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT--TSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH--hcCCC
Confidence            4578999999999999999999999999  88753

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.49  E-value=7.6e-08  Score=60.96  Aligned_cols=41  Identities=22%  Similarity=0.277  Sum_probs=35.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCccccccccc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQK   51 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~   51 (253)
                      -+++|||+|..|+|.|.....|..|+++  |+++...+..++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~--Htg~~~~~~~~~~   48 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQ--HGVTSLQLGYIDL   48 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHH--HTTTSCCCCSCCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhh--hCCCccccccccC
Confidence            4578999999999999999999999999  9987666665543

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.49  E-value=5.6e-08  Score=52.53  Aligned_cols=30  Identities=33%  Similarity=0.703  Sum_probs=28.1

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCcc
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (253)
                      |||.|+.|++.|...+.|..|+++  |+++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~--H~~~~~   30 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL--HELLGE   30 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH--HTTTCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH--hCCCCC
Confidence            689999999999999999999999  998876

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=8.9e-08  Score=55.88  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=26.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A           15 CKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567788889999999999999999999864

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=8.8e-08  Score=52.66  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=29.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      .++++||+|+.|++.|.....|..|+++  |++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNR--HSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHH--SSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHH--hccCC
Confidence            4588999999999999999999999999  88753

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=9.4e-08  Score=54.97  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=26.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A           13 CNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            566788889999999999999999999985

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=9.5e-08  Score=55.17  Aligned_cols=30  Identities=27%  Similarity=0.388  Sum_probs=25.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||+|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A           15 CQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            566778888899999999999999999884

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1.2e-07  Score=51.99  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=29.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      .++++||.|+.|++.|.....|..|+++  |++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLL--HTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHH--HSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHH--hcCCC
Confidence            4578999999999999999999999999  88763

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.46  E-value=6.2e-08  Score=62.38  Aligned_cols=40  Identities=15%  Similarity=0.294  Sum_probs=23.8

Q ss_pred             cccccCChHHHHHHHHHccCCCCCC-----ccccCccchhhhhhc
Q 025404           84 CMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKIS  123 (253)
Q Consensus        84 C~k~f~~~~~l~~H~~~h~~~~~~~-----C~~~f~~~~~l~~h~  123 (253)
                      |++.|.....|..|+++|++++||.     |++.|.....|..|+
T Consensus        25 C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~   69 (72)
T 2epa_A           25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR   69 (72)
T ss_dssp             TCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHT
T ss_pred             CccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHh
Confidence            5556666666666666666666553     445566666666665

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1e-07  Score=55.60  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=26.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A           15 CSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            566788889999999999999999999986

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=9.9e-08  Score=54.99  Aligned_cols=30  Identities=23%  Similarity=0.445  Sum_probs=24.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A           15 CNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            556777888888899999999999998874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.2e-07  Score=52.04  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=29.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      .++++||+|+.|++.|.....|..|+++  |++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   36 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRK--HTGEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHH--HTCCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHH--ccCCC
Confidence            4588999999999999999999999999  88753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.45  E-value=1.3e-07  Score=52.28  Aligned_cols=32  Identities=31%  Similarity=0.556  Sum_probs=28.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      -++++||+|+.|++.|.....|..|+++  |+++
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   37 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKR--HMLV   37 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGG--GTCC
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHH--hccC
Confidence            4578999999999999999999999998  8763

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.45  E-value=8.1e-08  Score=54.81  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=24.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A           13 CSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            556777788888888888888888888875

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=8.8e-08  Score=55.87  Aligned_cols=30  Identities=27%  Similarity=0.424  Sum_probs=20.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep0_A           15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTSSSCCCSCC
T ss_pred             CcccCcccCChHHHHHHHHHhCCCCCCCCC
Confidence            455666667777777777777777777765

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=9.9e-08  Score=55.64  Aligned_cols=31  Identities=26%  Similarity=0.503  Sum_probs=24.1

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A           15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            4556677778888888888888888888864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=1.1e-07  Score=52.31  Aligned_cols=33  Identities=33%  Similarity=0.520  Sum_probs=29.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      .++++||+|+.|++.|.....|..|+++  |++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRI--HTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHH--HCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHH--hCCCC
Confidence            4578999999999999999999999999  88753

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=5.9e-08  Score=56.05  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=24.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A           15 CNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             ETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566777788888888888888888888875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=1.1e-07  Score=55.48  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=21.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytt_A           15 CSECGKSFSGSYRLTQHWITHTREKPSGPS   44 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHTHHHHCCCCSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            445666677777777777777777777765

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=1.1e-07  Score=55.45  Aligned_cols=31  Identities=26%  Similarity=0.448  Sum_probs=24.0

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A           15 CNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556677778888888888888888888864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=1.2e-07  Score=55.38  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=22.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.-
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A           15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            4456667777777888888888888887753

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.43  E-value=1.5e-07  Score=55.52  Aligned_cols=30  Identities=30%  Similarity=0.471  Sum_probs=16.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |..|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (48)
T 2epr_A           15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSG   44 (48)
T ss_dssp             ETTTTEEESSHHHHHHHGGGSCSCCCCCSC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCCCCCccCC
Confidence            444555555555566666666666655543

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.43  E-value=1.4e-07  Score=54.71  Aligned_cols=31  Identities=16%  Similarity=0.166  Sum_probs=22.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|+++++|.|..
T Consensus        13 C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~   43 (45)
T 2epq_A           13 CPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS   43 (45)
T ss_dssp             ETTTTEECSCHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHccCCCCCCCcC
Confidence            5556677777777777777777777777653

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1e-07  Score=54.92  Aligned_cols=30  Identities=20%  Similarity=0.378  Sum_probs=21.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||+|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A           15 CCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             ETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455666777777777787778888887774

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1e-07  Score=55.61  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=24.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A           15 CIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4556777788888888888888888888864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.42  E-value=9.9e-08  Score=55.67  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=24.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||+|.-
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A           15 CAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777788888888888888888888864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1e-07  Score=55.58  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A           15 CSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556677777888888888888888888764

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1.3e-07  Score=55.18  Aligned_cols=31  Identities=23%  Similarity=0.440  Sum_probs=24.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+-
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A           15 CSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777778888888888888888888763

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1.1e-07  Score=55.39  Aligned_cols=31  Identities=26%  Similarity=0.461  Sum_probs=24.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A           15 CNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            4556777788888888888888888888864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=8.7e-08  Score=55.63  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=26.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||+|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A           15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             ETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            677888888999999999999999999885

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1.3e-07  Score=55.19  Aligned_cols=31  Identities=23%  Similarity=0.420  Sum_probs=24.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A           15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556677778888888888888888888864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1.2e-07  Score=55.26  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=24.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |..|++.|.+.+.|..|+++|++++||.|+-
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A           15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4556777778888888888888888888864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1.2e-07  Score=55.32  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=22.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A           15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            4556667777777778887888888887753

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.3e-07  Score=54.55  Aligned_cols=30  Identities=17%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A           15 CSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            556777888888999999999999998874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1.2e-07  Score=55.31  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=24.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.-
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A           15 CNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            5557777788888888888888888888864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1.3e-07  Score=55.15  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=24.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A           15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777788888888888888888888864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1.2e-07  Score=55.30  Aligned_cols=31  Identities=19%  Similarity=0.461  Sum_probs=25.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A           15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5557777888888888998999999988864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1.4e-07  Score=55.01  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=25.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A           15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4557778888889999999999999998864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1.3e-07  Score=53.92  Aligned_cols=29  Identities=31%  Similarity=0.470  Sum_probs=20.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C  109 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|
T Consensus        14 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           14 CDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            44466666677777777777777777765

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1.3e-07  Score=55.15  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=24.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A           15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556677778888888888888888888864

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.41  E-value=1.5e-07  Score=49.10  Aligned_cols=30  Identities=17%  Similarity=0.432  Sum_probs=27.3

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      ++||.|+.|++.|.....|..|+++  |++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~--h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLET--HDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHT--TCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHH--hccCC
Confidence            5899999999999999999999999  88753

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.1e-07  Score=52.72  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=27.9

Q ss_pred             CCCCcccccccccccCCHHHHHHh-hhhcCCCCC
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEH-MKISYHSVH   42 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H-~~~~~H~~~   42 (253)
                      ++++||+|+.|++.|.....|..| +++  |+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~--H~~~   36 (37)
T 2elm_A            5 SSGHLYYCSQCHYSSITKNCLKRHVIQK--HSNI   36 (37)
T ss_dssp             SSSCEEECSSSSCEEECHHHHHHHHHHH--TCCC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHHH--ccCc
Confidence            578999999999999999999999 888  8764

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=9.2e-08  Score=54.30  Aligned_cols=29  Identities=28%  Similarity=0.389  Sum_probs=24.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C  109 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A           13 CQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            66677888889999999999999999876

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.4e-07  Score=54.99  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=24.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A           15 CEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4556777788888888888888888888864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.3e-07  Score=55.17  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=23.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A           15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            4556677778888888888888888888763

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.3e-07  Score=55.11  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=23.1

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A           15 CGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556677777788888888888888887763

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.39  E-value=1.8e-07  Score=50.47  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=25.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~  108 (253)
                      |+.||+.|.+.+.|..|+++|++++||.
T Consensus         5 C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            5 CPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            6778899999999999999999999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.3e-07  Score=53.94  Aligned_cols=29  Identities=24%  Similarity=0.254  Sum_probs=22.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C  109 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|
T Consensus        14 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A           14 CETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45567777788888888888888888876

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.3e-07  Score=55.02  Aligned_cols=31  Identities=26%  Similarity=0.487  Sum_probs=24.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A           15 CSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5556777788888888888888888888864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.39  E-value=1.4e-07  Score=52.28  Aligned_cols=33  Identities=24%  Similarity=0.541  Sum_probs=29.5

Q ss_pred             CCCCCccccc--ccccccCCHHHHHHhhhhcCCCCCc
Q 025404            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus         9 ~~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      .++++||.|.  .|++.|...+.|..|+++  |++++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRW--HTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHH--HHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh--cCCCC
Confidence            5689999998  599999999999999999  88763

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.39  E-value=2.8e-08  Score=60.34  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=25.4

Q ss_pred             cccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404           22 KQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        22 k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      |.|.....|..|+++  |+++++ .|+.|++.|.+.++|..|+
T Consensus         4 k~~~~~~~l~~h~~~--H~~~k~~~C~~C~k~f~~~~~L~~H~   44 (54)
T 1yui_A            4 KRAKHPPGTEKPRSR--SQSEQPATCPICYAVIRQSRNLRRHL   44 (54)
T ss_dssp             CCCSCSSCCCCCHHH--HTSSCCEECTTTCCEESSHHHHHHHH
T ss_pred             cccCCCcchhhHHHh--cCCCCCccCCCCCcccCCHHHHHHHH
Confidence            445555566666666  666666 6666666666666666665

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.4e-07  Score=53.82  Aligned_cols=29  Identities=24%  Similarity=0.380  Sum_probs=22.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C  109 (253)
                      |+.|++.|.+.+.|..|+++|++++||+|
T Consensus        14 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           14 CEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45566777788888888888888888876

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.4e-07  Score=54.98  Aligned_cols=31  Identities=19%  Similarity=0.286  Sum_probs=24.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+-
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A           15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             ETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5567777788888888888888888888863

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.5e-07  Score=54.15  Aligned_cols=30  Identities=30%  Similarity=0.363  Sum_probs=24.0

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A           15 CNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            455677778888888888888888888874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.38  E-value=1.5e-07  Score=55.56  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=28.4

Q ss_pred             CCCCcccccccccccCCHHHHHHhhh-hcCCCCCcc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP   44 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~~~   44 (253)
                      +++|||.|..|++.|.....|..|++ +  |+++..
T Consensus         3 t~~kp~~C~~C~k~F~~~~~L~~H~~~~--H~~e~~   36 (48)
T 3iuf_A            3 DRDKPYACDICGKRYKNRPGLSYHYAHS--HLAEEE   36 (48)
T ss_dssp             TTTSCEECTTTCCEESSHHHHHHHHHHS--SCC---
T ss_pred             CCCcCEECCCcCcccCCHHHHHHHhhhh--cCCCCC
Confidence            57999999999999999999999999 8  988765

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.5e-07  Score=54.34  Aligned_cols=30  Identities=27%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A           15 CNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            556777788888888999999998888764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.37  E-value=1.6e-07  Score=48.09  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=24.9

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCC
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHS   40 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (253)
                      ++||+|+.|++.|...+.|..|+++  |+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRG--HS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTT--CC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHh--cC
Confidence            5799999999999999999999998  74

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=1.8e-07  Score=54.47  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=23.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A           15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             ETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5556677777788888888888888888763

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.36  E-value=1.6e-07  Score=53.49  Aligned_cols=29  Identities=34%  Similarity=0.613  Sum_probs=24.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C  109 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|
T Consensus        14 C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           14 CGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            56677788888999999999999999886

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=1.4e-07  Score=54.98  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=24.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A           15 CSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            4556777788888888888888888888864

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.36  E-value=2e-07  Score=47.91  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=25.7

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCC
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      ++||+|+.|++.|.....|..|+++  |++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRV--HTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTT--SCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHh--cCC
Confidence            5799999999999999999999998  764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1e-07  Score=52.69  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=28.8

Q ss_pred             CCCCcccccccccccCCH-HHHHHhhhhcCCCCCc
Q 025404           10 RSTARHKCVACYKQFKRK-DHLIEHMKISYHSVHQ   43 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~-~~l~~H~~~~~H~~~~   43 (253)
                      ++++||+|+.|++.|... ..|..|+++  |++++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~~L~~H~~~--H~~~k   37 (37)
T 2elp_A            5 SSGRAMKCPYCDFYFMKNGSDLQRHIWA--HEGVK   37 (37)
T ss_dssp             CCCCCEECSSSSCEECSSCHHHHHHHHH--HHTCC
T ss_pred             CCCCCeECCCCChhhccCHHHHHHHHHh--cCCCC
Confidence            578999999999999999 999999999  87753

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2e-07  Score=54.33  Aligned_cols=31  Identities=26%  Similarity=0.247  Sum_probs=24.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A           15 CNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556677788888888888888888888864

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.35  E-value=2.1e-07  Score=47.50  Aligned_cols=27  Identities=15%  Similarity=0.445  Sum_probs=25.0

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCC
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHS   40 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (253)
                      ++||.|+.|++.|.....|..|+++  |+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~--H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRT--HG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH--CC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHH--cc
Confidence            5899999999999999999999998  74

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=2e-07  Score=53.75  Aligned_cols=30  Identities=20%  Similarity=0.423  Sum_probs=22.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A           15 CSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            455667777788888888888888888774

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.35  E-value=1.9e-07  Score=51.50  Aligned_cols=28  Identities=25%  Similarity=0.382  Sum_probs=24.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhh
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      ..+||||+|+.|+|.|.+++.|..|+..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~py   30 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCCe
Confidence            4589999999999999999999999854

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=2.1e-07  Score=54.25  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=25.0

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A           15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4557777888888888888888888888864

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.34  E-value=3.1e-08  Score=53.12  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=27.9

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCcc
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (253)
                      +||+|+.|++.|...+.|..|+++  |++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~--H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT--AFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS--SSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH--HccCCC
Confidence            689999999999999999999999  998875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=3.5e-08  Score=64.44  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=17.9

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccc
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLS   53 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f   53 (253)
                      +++|+.|+.|++.|. ...|..|+ .  |.++++ .|+.|++.|
T Consensus        14 ~~r~~~C~~C~~~~~-~~~L~~H~-~--~c~~~~~~C~~C~~~~   53 (75)
T 2d9k_A           14 PLRLAVCQHCDLELS-ILKLKEHE-D--YCGARTELCGNCGRNV   53 (75)
T ss_dssp             CCCCEECSSSCCEEC-HHHHHHHH-H--HHHHCEEECSSSCCEE
T ss_pred             CCcccCCcccChHhh-HHHHHHHH-h--HcCCCceEcccCCCcC
Confidence            444555555555442 44445554 4  444444 444444433

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.9e-07  Score=54.39  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=23.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|..
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en3_A           15 CKECGMNFSWSCSLFKHLRSHERTDPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSSHHHHHHHHHHHHSCCSSCSC
T ss_pred             CcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556667777788888888888888888764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.32  E-value=2.1e-07  Score=51.79  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=29.7

Q ss_pred             CCCCccccc--ccccccCCHHHHHHhhhhcCCCCCcc
Q 025404           10 RSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP   44 (253)
Q Consensus        10 ~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (253)
                      ++++||.|.  .|++.|...+.|..|+++  |+++++
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k~   36 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHK--HEMTLK   36 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHH--HHTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHH--hCCCCC
Confidence            478999999  699999999999999999  888765

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.32  E-value=2.9e-07  Score=47.58  Aligned_cols=29  Identities=28%  Similarity=0.654  Sum_probs=26.4

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      +||.|+.|++.|.....|..|+++  |++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH--HSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH--hcCCC
Confidence            589999999999999999999999  87753

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.32  E-value=2e-07  Score=48.33  Aligned_cols=29  Identities=34%  Similarity=0.687  Sum_probs=26.5

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      +||.|+.|++.|.....|..|+++  |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILL--HENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTG--GGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH--hcCCC
Confidence            689999999999999999999999  88753

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.30  E-value=2.9e-07  Score=48.95  Aligned_cols=30  Identities=33%  Similarity=0.533  Sum_probs=27.3

Q ss_pred             CCccccc--ccccccCCHHHHHHhhhhcCCCCCc
Q 025404           12 TARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        12 ~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      ++||.|+  .|++.|...+.|..|+++  |++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKS--HQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG--GTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHH--ccCCC
Confidence            5899999  899999999999999999  88763

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.29  E-value=4.5e-07  Score=47.86  Aligned_cols=29  Identities=31%  Similarity=0.584  Sum_probs=26.5

Q ss_pred             Cccccc--ccccccCCHHHHHHhhhhcCCCCCc
Q 025404           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        13 k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      +||.|+  .|++.|...+.|..|+++  |++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRT--HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT--TSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHH--hcCCC
Confidence            689998  999999999999999999  98763

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=2.3e-07  Score=54.03  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=25.4

Q ss_pred             ccccccccCChHHHHHHHHHccC-CCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSL-SAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~-~~~~~C~  110 (253)
                      |+.|++.|.+.+.|..|+++|++ ++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A           15 CNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            55677788888999999999999 9999885

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=2.9e-07  Score=59.98  Aligned_cols=62  Identities=18%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             HHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh----CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccC
Q 025404           29 HLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        29 ~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~----~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      .|..|+++  |.+.++ .|..|++.|. .+.|..|+    ++++.|            +.|++.|. ...|..|+++|.+
T Consensus         4 ~L~~H~~~--~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C------------~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            4 GSSGHEET--ECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELC------------GNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCSCCCCC--CCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEEC------------SSSCCEEE-TTGGGTHHHHBTT
T ss_pred             HHHhhCcc--cCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEc------------ccCCCcCc-HHHHHHHHHHccC
Confidence            46778888  999999 9999999995 89999997    567765            44666666 4889999999988


Q ss_pred             CCC
Q 025404          104 SAP  106 (253)
Q Consensus       104 ~~~  106 (253)
                      ++.
T Consensus        68 ~~~   70 (75)
T 2d9k_A           68 EGS   70 (75)
T ss_dssp             BSS
T ss_pred             CcC
Confidence            753

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.26  E-value=4.5e-07  Score=50.72  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=26.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C  109 (253)
                      |+.||+.|.+.+.|..|+++|++++||.+
T Consensus         9 C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            9 CSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            77788999999999999999999999864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.26  E-value=3.1e-07  Score=47.44  Aligned_cols=29  Identities=38%  Similarity=0.652  Sum_probs=26.4

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      +||.|+.|++.|.....|..|+++  |++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI--HSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH--HHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHH--hcCCC
Confidence            689999999999999999999999  87753

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.58  E-value=1.2e-07  Score=49.55  Aligned_cols=29  Identities=28%  Similarity=0.571  Sum_probs=26.6

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      ++||.|+.|++.|.....|..|+++  |+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRI--HTGE   29 (30)
Confidence            5799999999999999999999999  8765

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.25  E-value=4.8e-08  Score=65.85  Aligned_cols=46  Identities=13%  Similarity=0.147  Sum_probs=36.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCccccCccchhhhhhccccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAID  127 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~~f~~~~~l~~h~~~~~  127 (253)
                      |+.|++.|.+.+.|..|+++|++++||.|.. +.....|..|.+.+.
T Consensus        28 C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~-~~~~~~~~~~~~~~~   73 (88)
T 1x6f_A           28 CKHCDSKLQSTAELTSHLNIHNEEFQKRAKR-QERRKQLLSKQKYAD   73 (88)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHHHHHHHCCC-CSCCCCCCCCCCCCC
T ss_pred             CCCCCCEeCCHHHHHHHHHHhCCCCCcccch-hhhHHHHHhhhcccc
Confidence            6678888999999999999999999999965 556666777765544

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.56  E-value=1.3e-07  Score=49.06  Aligned_cols=28  Identities=32%  Similarity=0.632  Sum_probs=25.9

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      +||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ--HTGE   28 (29)
Confidence            589999999999999999999999  8775

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.23  E-value=5.2e-07  Score=52.90  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=21.4

Q ss_pred             ccccccCChHHHHHHHHHccCCCCCCccc
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~~~~C~~  111 (253)
                      .|++.|.+.+.|..|+++|++++||+|..
T Consensus        19 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   47 (48)
T 2ent_A           19 GCGWRFSRSDELSRHRRSHSGVKPSGPSS   47 (48)
T ss_dssp             SCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred             CCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            56677777777777877787777777753

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.23  E-value=5.1e-07  Score=47.06  Aligned_cols=29  Identities=41%  Similarity=0.671  Sum_probs=25.9

Q ss_pred             CcccccccccccCCHHHHHHh-hhhcCCCCCc
Q 025404           13 ARHKCVACYKQFKRKDHLIEH-MKISYHSVHQ   43 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H-~~~~~H~~~~   43 (253)
                      +||.|+.|++.|...+.|..| +++  |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~--H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI--HSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT--SCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH--ccCCC
Confidence            589999999999999999999 788  88753

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.22  E-value=4.4e-07  Score=47.18  Aligned_cols=29  Identities=17%  Similarity=0.305  Sum_probs=26.3

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      +||.|+.|++.|...+.|..|+++  |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKT--KHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH--HTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH--HccCC
Confidence            589999999999999999999999  77664

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.21  E-value=8.4e-07  Score=44.98  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=23.7

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      ||+|+.|++.|.....|..|+++  |+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~--h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRV--HKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGG--TCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHH--cCCC
Confidence            68999999999999999999999  8763

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=3.6e-07  Score=47.15  Aligned_cols=28  Identities=39%  Similarity=0.750  Sum_probs=25.8

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      +||.|+.|++.|.....|..|+++  |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI--HIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH--HHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH--hccC
Confidence            689999999999999999999999  8765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.17  E-value=5.4e-07  Score=49.68  Aligned_cols=30  Identities=17%  Similarity=0.105  Sum_probs=20.8

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhhCCCCCCC
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHLTGPLSKA   70 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~   70 (253)
                      +.+++| +|++||++|.+.++|.+|+  ||.|.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~--py~C~   33 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ--AYYCS   33 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH--HHTST
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC--CeECc
Confidence            456677 7777777777777777776  55553

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.41  E-value=3.2e-07  Score=46.27  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=22.7

Q ss_pred             CcccccccccccCCHHHHHHhhhh
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      |||.|+.|++.|...+.|..|+++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            689999999999999999999998

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.10  E-value=1.6e-06  Score=46.92  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=22.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      |..|++.|.+.+.|..|+++|++++|
T Consensus        10 C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A           10 CALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            67788888999999999999998875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.07  E-value=1.9e-06  Score=47.31  Aligned_cols=26  Identities=15%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      |..|++.|.+.+.|..|+++|++++|
T Consensus        12 C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A           12 CPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             ETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            67788888899999999999998875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.02  E-value=1.1e-07  Score=50.86  Aligned_cols=27  Identities=22%  Similarity=0.439  Sum_probs=24.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPV  107 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~  107 (253)
                      |+.||+.|.+.+.|..|+++|++++||
T Consensus         5 C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            5 CPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             SSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            677888889999999999999999986

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.00  E-value=3.8e-06  Score=43.11  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=22.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |+.|++.|.+.+.|..|+++|++++
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            5 CEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhcCCC
Confidence            7788899999999999999998864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.99  E-value=7.6e-07  Score=52.15  Aligned_cols=32  Identities=25%  Similarity=0.581  Sum_probs=27.4

Q ss_pred             CCCCccccc--ccccccCCHHHHHHhhhhcCCCCCc
Q 025404           10 RSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        10 ~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      ++++||+|+  .|++.|...+.|..|+++  |++++
T Consensus        14 ~~~k~~~C~~~~C~k~F~~~~~L~~H~~~--H~~ek   47 (47)
T 1ncs_A           14 MPDKTFECLFPGCTKTFKRRYNIRSHIQT--HLEDR   47 (47)
T ss_dssp             ETTTEEECCCTTCCCEECSSSSHHHHHHH--HTTTC
T ss_pred             CCCCCeECCCCCCCCccCCHHHHHHHHHH--ccCCC
Confidence            478999995  799999999999999998  88753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.99  E-value=2.7e-06  Score=46.05  Aligned_cols=26  Identities=15%  Similarity=0.531  Sum_probs=21.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      |..|++.|.+.+.|..|+++|++++|
T Consensus        10 C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A           10 CRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            66778888888999999999988775

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.98  E-value=3.3e-06  Score=43.35  Aligned_cols=27  Identities=30%  Similarity=0.508  Sum_probs=24.7

Q ss_pred             Cccccc--ccccccCCHHHHHHhhhhcCCCC
Q 025404           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus        13 k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      +||.|+  .|++.|...+.|..|+++  |++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~--H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKI--HTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGG--GTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHH--hCC
Confidence            589999  999999999999999999  764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.98  E-value=3.9e-06  Score=43.34  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=23.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      |+.|++.|.+.+.|..|+++|+++++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            5 CQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCCCCCccCCHHHHHHHHHHHccCCC
Confidence            77788999999999999999998764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.95  E-value=3e-06  Score=43.60  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=22.8

Q ss_pred             cccccccccCChHHHHHHHHHccCCC
Q 025404           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      .|+.|++.|.+.+.|..|+++|++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            4 ACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             ECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             cCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            37788999999999999999998874

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.95  E-value=3.8e-06  Score=43.09  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |..|++.|.+.+.|..|+++|++++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            5 CRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCCCCCccCChhHHHHHHHHhcCCC
Confidence            7788999999999999999999874

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.95  E-value=4e-06  Score=46.32  Aligned_cols=28  Identities=21%  Similarity=0.384  Sum_probs=24.8

Q ss_pred             cc--ccccccCChHHHHHHHHHccCCCCCC
Q 025404           81 CN--LCMNIFDSPSSLIKHKEACSLSAPVP  108 (253)
Q Consensus        81 C~--~C~k~f~~~~~l~~H~~~h~~~~~~~  108 (253)
                      |.  .|++.|.+.+.|..|+++|++++||.
T Consensus         9 C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            9 CTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            56  58899999999999999999999873

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.95  E-value=3.2e-06  Score=46.37  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=11.9

Q ss_pred             cccccccCChHHHHHHHHHccC
Q 025404           82 NLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      +.|++.|.+.+.|..|+++|++
T Consensus        15 ~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A           15 PDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             TTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCCcccCcHHHHHHHHHHhcc
Confidence            3344555555556666655554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.91  E-value=5.3e-06  Score=42.83  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=22.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |..|++.|.+.+.|..|+++|++++
T Consensus         6 C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            6 CDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhccCC
Confidence            7778899999999999999998864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.90  E-value=3.8e-06  Score=42.40  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=20.8

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |..|++.|.+.+.|..|+++|+++
T Consensus         4 C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            4 CGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             CSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CCCCCCcCCCHHHHHHHHHHcCCC
Confidence            778899999999999999999864

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.89  E-value=7.1e-06  Score=44.57  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |+.|++.|.+.+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A           12 CDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             cCcCCCCcCchHHHHHHHHHhcCCC
Confidence            6778888889999999999998874

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=5.2e-06  Score=42.48  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=22.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |+.|++.|.+.+.|..|+++|++++
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            5 CPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhccCC
Confidence            6778889999999999999998874

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.07  E-value=2e-06  Score=44.35  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |+.|++.|.+.+.|..|+++|++++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            5 CVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            7788899999999999999998764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=7.6e-06  Score=44.52  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=21.4

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |+.|++.|...+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A           12 CEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCceeCCHHHHHHHHHHhCCCC
Confidence            6778888889999999999998764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=7.9e-06  Score=45.52  Aligned_cols=22  Identities=14%  Similarity=0.001  Sum_probs=19.6

Q ss_pred             ccccccCChHHHHHHHHHccCC
Q 025404           83 LCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      .|+++|.+++.|+.|+++|+++
T Consensus        16 ~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A           16 GCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCccCCHHHHHHHHHhcCCC
Confidence            3888999999999999999886

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.85  E-value=6.5e-06  Score=43.14  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             ccccccCChHHHHHHHHHccCCC
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      .||+.|.+.+.|..|+++|++++
T Consensus         9 ~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            9 YCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             TCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCcccCCHhHHHHHHHHhcCCC
Confidence            79999999999999999999874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=8.2e-06  Score=44.30  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=20.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |..|++.|...+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A           12 CPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHccCCC
Confidence            6667788888899999999998764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=6.5e-06  Score=44.81  Aligned_cols=25  Identities=16%  Similarity=0.264  Sum_probs=19.2

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |..|++.|.+.+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A           12 CHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCccCCHHHHHHHHHHhcCCC
Confidence            5667777888888888888887764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=1.1e-05  Score=43.90  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |+.|++.|.+.+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A           12 CSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCchhCCHHHHHHHHHHhccCC
Confidence            6667788888888999998888764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.76  E-value=1.2e-05  Score=42.43  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=21.9

Q ss_pred             cc--ccccccCChHHHHHHHHHccCCC
Q 025404           81 CN--LCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~--~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |.  .|++.|.+.+.|..|+++|++++
T Consensus         6 C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            6 CDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            55  68899999999999999999874

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.94  E-value=3.9e-06  Score=43.45  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=21.8

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |+.|++.|.+.+.|..|+++|++++
T Consensus         6 C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            6 CIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            6778889999999999999998764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=1.1e-05  Score=44.09  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             ccccccccCCh-HHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSP-SSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~-~~l~~H~~~h~~~~  105 (253)
                      |+.|++.|.+. +.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A           12 CPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCChhhccCHHHHHHHHHhcCCCC
Confidence            56677788888 88999998888764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=8.5e-06  Score=44.76  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=14.2

Q ss_pred             ccccccccCChHHHHHH-HHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKH-KEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H-~~~h~~~  104 (253)
                      |+.|++.|.+.+.|..| +++|+++
T Consensus        12 C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A           12 CSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHHccCc
Confidence            44455566666666666 6666543

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.70  E-value=1.7e-05  Score=39.98  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |+.||+.|.+.+.|..|+++|+
T Consensus         6 C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            6 CSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CSSSSCEESSHHHHHHHHHHCC
T ss_pred             CCCcChhhCCHHHHHHHHHHcc
Confidence            6778889999999999999884

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.70  E-value=2.9e-05  Score=48.89  Aligned_cols=26  Identities=23%  Similarity=0.611  Sum_probs=22.3

Q ss_pred             ccccccccCChHHHHHHHHHccCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      |..|++.|.+.+.|..|+++|++++.
T Consensus        16 C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A           16 CGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            56678888999999999999998753

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.69  E-value=1.2e-05  Score=40.82  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=19.6

Q ss_pred             ccccccccCChHHHHHHHHHccC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      |+.|++.|.+.+.|..|+++|++
T Consensus         6 C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            6 CSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCC
Confidence            67788888999999999988864

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.67  E-value=1.2e-05  Score=41.53  Aligned_cols=25  Identities=32%  Similarity=0.585  Sum_probs=21.6

Q ss_pred             ccccccccCChHHHHHH-HHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKH-KEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H-~~~h~~~~  105 (253)
                      |+.|++.|.+.+.|..| +++|++++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            5 CGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CcccCcccCChHHHHHHHHHHccCCC
Confidence            77788999999999999 78998864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.64  E-value=1.4e-05  Score=40.35  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=18.5

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |+.||+.|.+.+.|..|+++|+
T Consensus         6 C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            6 CPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             ETTTTEEESCHHHHHHHHTTCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcC
Confidence            7778888889999999988774

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.62  E-value=2.4e-05  Score=42.83  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=20.0

Q ss_pred             ccccccCChHHHHHHHHHccCCC
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      .|++.|.+.+.|..|+++|++++
T Consensus        15 ~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A           15 GCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             TCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCccCCHHHHHHHHHhcCCCC
Confidence            48888999999999999998874

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.70  E-value=1.1e-05  Score=40.23  Aligned_cols=22  Identities=27%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |+.||+.|.+.+.|..|+++|+
T Consensus         5 C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            5 CERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            6778888899999999998874

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.46  E-value=4.5e-05  Score=38.84  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=20.5

Q ss_pred             cc--ccccccCChHHHHHHHHHccC
Q 025404           81 CN--LCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        81 C~--~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      |.  .|++.|.+.+.|..|+++|++
T Consensus         5 C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            5 CHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             ECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CcCCcCcCccCCHHHHHHHHHHhCC
Confidence            67  899999999999999999874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.46  E-value=4.3e-05  Score=44.68  Aligned_cols=26  Identities=15%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             ccccccccCChHHHHHHHH-HccCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKE-ACSLSAP  106 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~-~h~~~~~  106 (253)
                      |..|++.|.+.+.|..|++ +|+++.+
T Consensus        10 C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A           10 CDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            6778888999999999999 9998765

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.29  E-value=7.1e-05  Score=43.43  Aligned_cols=23  Identities=13%  Similarity=0.183  Sum_probs=19.2

Q ss_pred             ccccccCChHHHHHHHHHccCCC
Q 025404           83 LCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      .|++.|.+.+.|..|+++|++++
T Consensus        25 ~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           25 GCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCccCCHHHHHHHHHHccCCC
Confidence            57788888889999999998864

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.75  E-value=0.00058  Score=48.20  Aligned_cols=28  Identities=25%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhh
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      .+|++||.|..|++.|.+...|..|+++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            3466666666666666666666666654

>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}

Probab=96.56  E-value=0.0032  Score=48.06  Aligned_cols=102  Identities=14%  Similarity=0.062  Sum_probs=62.8

Q ss_pred             cCCCceeeeecccccCCCCCcccccceeeeecCCCCeEEeeeccC-CCCcccceee--eccCCHHhhcCCCCHHHHHHHH
Q 025404          132 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQP-QLPVTNYRYE--VTGLTEEDIKNAMPLKEVKDKI  208 (253)
Q Consensus       132 ~~~~~~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~~~~~~v~P-~~~i~~~~~~--~~Git~~~l~~~~~~~~v~~~l  208 (253)
                      .....-+.+|||+++.+.  ..++ ..|-+|.++|...|-...-. ...+.++..+  +.++.........++.++..+|
T Consensus        19 p~~m~r~FlDTEFt~d~~--~~eL-ISIGlV~EdGrEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~~L   95 (190)
T 4hec_A           19 PGSMVRYFYDTEFIEDGH--TIEL-ISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLDL   95 (190)
T ss_dssp             --CEEEEEEEEEEEECSS--CEEE-EEEEEEETTSCEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHHHHH
T ss_pred             CCceeEEEEeeeecCCCC--CCCE-EEEEEEcCCCCEEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHHHHH
Confidence            334456899999998433  3344 66777788998755433211 1223333322  3455443344446899999999


Q ss_pred             HHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                      .+||...         .+....|+|++..+|..+|.-
T Consensus        96 ~~FL~~~---------~~~~~eLwa~~~~yD~~~L~q  123 (190)
T 4hec_A           96 EEFLRID---------GTDSIELWAWVGAYDHVALCQ  123 (190)
T ss_dssp             HHHTTTT---------SSCEEEEEESSCHHHHHHHHT
T ss_pred             HHHHHhc---------CCCCCEEEEecccccHHHHHH
Confidence            9999310         012236999999999998863

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.0035  Score=38.94  Aligned_cols=56  Identities=23%  Similarity=0.247  Sum_probs=36.3

Q ss_pred             cccccccCCHHHHHHhhh-hcCCCCCccccccccccccCHHHHhhhhCCCCCCCcCCcccccccccccccccCChHHHHH
Q 025404           18 VACYKQFKRKDHLIEHMK-ISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIK   96 (253)
Q Consensus        18 ~~C~k~f~~~~~l~~H~~-~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~   96 (253)
                      ..|++.|.+...|..|+. .  |.+.++.                ....+|.|.          -..|+..+.....|..
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~--Hv~~~~~----------------~~~~~~~C~----------W~~C~~~~~~~~~L~~   58 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKD--HVSQDFK----------------HPMEPLACN----------WEDCDFLGDDTASIVN   58 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHH--SCCCCCC----------------CSSCCEECC----------CSSCCCEESSHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhh--ccCcccC----------------CCCCCCEee----------CCCCcCCCCChHHHHh
Confidence            569999999999999984 6  8765420                001245552          2346666666677888


Q ss_pred             HHHHc
Q 025404           97 HKEAC  101 (253)
Q Consensus        97 H~~~h  101 (253)
                      |+++.
T Consensus        59 Hir~~   63 (64)
T 1zw8_A           59 HINAQ   63 (64)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            88764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.49  E-value=0.0075  Score=34.30  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=22.6

Q ss_pred             CcccccccccccCCHHHHHHhhhh
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      .+|.|+.|+..|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            789999999999999999999986

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.0088  Score=37.07  Aligned_cols=43  Identities=14%  Similarity=0.071  Sum_probs=34.3

Q ss_pred             cccccccCChHHHHHHH-HHccCCC------CCC-----ccccCccchhhhhhcc
Q 025404           82 NLCMNIFDSPSSLIKHK-EACSLSA------PVP-----FEKTLSNAESQKKISG  124 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~-~~h~~~~------~~~-----C~~~f~~~~~l~~h~~  124 (253)
                      ..|++.|.+...|..|+ +.|.+.+      +|.     |++.+.....|..|++
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir   61 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN   61 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcc
Confidence            45899999999999998 5898776      443     7777777778888864

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.88  E-value=0.024  Score=40.36  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=44.6

Q ss_pred             CCcccccccccccCCHHHHHHhh--hhcCCCCC-cc-ccccc-------cccccCHHHHhhhhCCCCCCCcCCccccccc
Q 025404           12 TARHKCVACYKQFKRKDHLIEHM--KISYHSVH-QP-KCAVC-------QKLSKSFESLREHLTGPLSKAHCSGIFSDRG   80 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~--~~~~H~~~-~~-~C~~C-------~~~f~~~~~l~~H~~~~~~C~~C~~~f~~~~   80 (253)
                      .+++.|..|+..|...+.+..|.  +.  |... +. .+ .+       ++.|....    +.      .. ...-....
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkk--H~~~v~~~~~-~~~~~~~~~~~~~~~~~----~~------~~-~~~~~~~~   95 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRK--HANKVRRYMA-INQGEDSVPAKKFKAAP----AE------IS-DGEDRSKC   95 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHH--HHHHHHHHHH-HTTCCCCCSCCCCSCCS----SC------CS-SCCCTTTE
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHH--HHHHHHHHhc-ccCcccCCCCCccCCCc----cc------cc-cCCCCCeE
Confidence            47789999999999999999998  44  4321 11 22 12       11121100    10      00 00111123


Q ss_pred             ccccccccCChHHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHKE   99 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~   99 (253)
                      |..|+++|.+...|..|..
T Consensus        96 C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           96 CPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             ETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCEeCCHHHHHHHHC
Confidence            8999999999999999974

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.83  E-value=0.022  Score=32.35  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             cccccccccCChHHHHHHHHHccCC
Q 025404           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      .|+.|+..|.....|+.||+-.-++
T Consensus        14 ~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           14 ICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             eCCcccccccchHHHHhhhhhcCcc
Confidence            3888999999999999999855443

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.62  E-value=0.012  Score=41.53  Aligned_cols=18  Identities=22%  Similarity=0.331  Sum_probs=9.7

Q ss_pred             cccccccCChHHHHHHHH
Q 025404           82 NLCMNIFDSPSSLIKHKE   99 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~   99 (253)
                      ..|++.|.+.+.|..|++
T Consensus        54 ~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           54 LACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             TTTTEECSSHHHHHHHTT
T ss_pred             ccCcchhCCHHHHHHHHh
Confidence            345555555555555554

>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*

Probab=93.95  E-value=0.084  Score=48.62  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=42.8

Q ss_pred             eeeeecccccCCCCCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhcCC
Q 025404          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  216 (253)
Q Consensus       137 ~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~~~  216 (253)
                      ++++|+||+|...... .+ ..+.+.+......+  .+.|                .      .++++++.|..++.   
T Consensus         1 ~vv~D~ETtGl~~~~d-~i-~~iqi~~~~~~~~~--~~~p----------------~------~i~~~l~~L~~~l~---   51 (698)
T 1x9m_A            1 MIVSDIEANALLESVT-KF-HCGVIYDYSTAEYV--SYRP----------------S------DFGAYLDALEAEVA---   51 (698)
T ss_dssp             CEEEEEEESSCGGGCC-CE-EEEEEEETTTTEEE--EECG----------------G------GHHHHHHHHHHHHH---
T ss_pred             CEEEEcCCCCcCCCCC-EE-EEEEEEecCCCcEE--EECh----------------H------HHHHHHHHHHHHHh---
Confidence            4799999999753221 22 45555543221111  1111                1      33556788888882   


Q ss_pred             CCCcccccCCCCeEEEeech-hhhhhhhc
Q 025404          217 STGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (253)
Q Consensus       217 ~~~~~~~~~~~~~~lv~h~~-~~D~~~l~  244 (253)
                                .+.++||||+ .||+.+|.
T Consensus        52 ----------~~~~kV~HNa~kfD~~~L~   70 (698)
T 1x9m_A           52 ----------RGGLIVFHNGHKYDVPALT   70 (698)
T ss_dssp             ----------TTCCEEESSTTTTHHHHHH
T ss_pred             ----------cCCeEEEcCChHHHHHHHH
Confidence                      3468999999 99999995

>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*

Probab=93.88  E-value=0.12  Score=46.65  Aligned_cols=81  Identities=19%  Similarity=0.203  Sum_probs=49.4

Q ss_pred             ceeeeecccccCCCCCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhcC
Q 025404          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (253)
Q Consensus       136 ~~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~~  215 (253)
                      .++++|+|++|..... ..+ ..+.++-.+++..   ++ |...        .+++   +.+.+++.+++..|..++.  
T Consensus        27 ~~va~DtEttgl~~~~-~~i-v~I~~~~~~g~~~---yi-p~~~--------~~~~---~~~~l~~~~vl~~L~~~L~--   87 (605)
T 2kfn_A           27 PVFAFDTETDSLDNIS-ANL-VGLSFAIEPGVAA---YI-PVAH--------DYLD---APDQISRERALELLKPLLE--   87 (605)
T ss_dssp             SSEEEEEEESCSCTTT-CCE-EEEEEEEETTEEE---EE-ECCC--------CSTT---CCCCCCHHHHHHHHHHHHT--
T ss_pred             CeEEEEEecCCCCccc-Cce-EEEEEEEcCCcEE---EE-eccc--------cccc---cccccCHHHHHHHHHHHHc--
Confidence            5689999999975311 122 3333321244432   23 1111        0111   1345678999999999993  


Q ss_pred             CCCCcccccCCCCeEEEeechhhhhhhhcC
Q 025404          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       216 ~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~  245 (253)
                                +.+.++||||+.||+.+|+-
T Consensus        88 ----------d~~i~kV~hnak~D~~~L~~  107 (605)
T 2kfn_A           88 ----------DEKALKVGQNLKYDRGILAN  107 (605)
T ss_dssp             ----------CTTSCEEESSHHHHHHHHHT
T ss_pred             ----------CCCCeEEEECcHHHHHHHHH
Confidence                      23458999999999999963

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=90.83  E-value=0.31  Score=34.45  Aligned_cols=73  Identities=14%  Similarity=0.049  Sum_probs=41.3

Q ss_pred             cc-ccccccccccCHHHHhhhhC--------CCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCCCCC---cc
Q 025404           43 QP-KCAVCQKLSKSFESLREHLT--------GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FE  110 (253)
Q Consensus        43 ~~-~C~~C~~~f~~~~~l~~H~~--------~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~  110 (253)
                      ++ .|..|+..|.+.+.+..|..        +.+.+ .++....     .-++.+....    +...+.+.+.|-   |.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~-~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~C~~C~  100 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA-INQGEDS-----VPAKKFKAAP----AEISDGEDRSKCCPVCN  100 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH-HTTCCCC-----CSCCCCSCCS----SCCSSCCCTTTEETTTT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc-ccCcccC-----CCCCccCCCc----cccccCCCCCeEcCCCC
Confidence            44 89999999999999999971        12221 1111000     0012222110    111233333442   99


Q ss_pred             ccCccchhhhhhccc
Q 025404          111 KTLSNAESQKKISGA  125 (253)
Q Consensus       111 ~~f~~~~~l~~h~~~  125 (253)
                      ..|.....+..|...
T Consensus       101 ~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A          101 MTFSSPVVAESHYIG  115 (127)
T ss_dssp             EECSSHHHHHHHHTS
T ss_pred             CEeCCHHHHHHHHCC
Confidence            999999999999854

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=88.72  E-value=0.18  Score=28.51  Aligned_cols=20  Identities=25%  Similarity=0.574  Sum_probs=12.4

Q ss_pred             CCCCcCCccccccc--------cccccc
Q 025404           67 LSKAHCSGIFSDRG--------CNLCMN   86 (253)
Q Consensus        67 ~~C~~C~~~f~~~~--------C~~C~k   86 (253)
                      |.|-.||+.|+...        |+.||.
T Consensus         4 Y~C~rCg~~fs~~el~~lP~IrCpyCGy   31 (48)
T 4ayb_P            4 YRCGKCWKTFTDEQLKVLPGVRCPYCGY   31 (48)
T ss_dssp             -CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred             EEeeccCCCccHHHHhhCCCcccCccCc
Confidence            56777777776542        777763

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=87.88  E-value=0.43  Score=25.20  Aligned_cols=27  Identities=26%  Similarity=0.549  Sum_probs=22.8

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCC
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      .|.|+.|-+.|.....|..|.... |..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~-H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAV-HDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHH-TSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhc-ccc
Confidence            499999999999999999998653 654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=87.43  E-value=0.26  Score=36.66  Aligned_cols=60  Identities=20%  Similarity=0.446  Sum_probs=29.2

Q ss_pred             cc--ccccccccCHHHHhhhh-C---CCCCCCcCCcccccc---------------cccccccccCChHHHHHHHHHccC
Q 025404           45 KC--AVCQKLSKSFESLREHL-T---GPLSKAHCSGIFSDR---------------GCNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        45 ~C--~~C~~~f~~~~~l~~H~-~---~~~~C~~C~~~f~~~---------------~C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      .|  .-|+..+. ...+..|. +   .+..|+.|+..+...               .|+.|+..+. ...|..|+.+++|
T Consensus        84 ~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~  161 (170)
T 3hcs_A           84 KCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPL  161 (170)
T ss_dssp             ECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC
T ss_pred             CCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHHHHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcC
Confidence            56  45766554 34567776 2   223355554444322               1555555554 3445566666655


Q ss_pred             CCC
Q 025404          104 SAP  106 (253)
Q Consensus       104 ~~~  106 (253)
                      +.+
T Consensus       162 ~~~  164 (170)
T 3hcs_A          162 ALE  164 (170)
T ss_dssp             ---
T ss_pred             hhh
Confidence            544

>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*

Probab=86.82  E-value=2  Score=36.38  Aligned_cols=37  Identities=5%  Similarity=0.135  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeech-hhhhhhhc
Q 025404          197 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (253)
Q Consensus       197 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~  244 (253)
                      ...+-.++...+.+++..-      +     -.||||||+ .||+.+|.
T Consensus       187 ~~~~E~~LL~~f~~~i~~~------d-----PDii~GyN~~~FDlpyL~  224 (388)
T 1noy_A          187 PFDNERDMLMEYINLWEQK------R-----PAIFTGWNIEGFDVPYIM  224 (388)
T ss_dssp             EESCHHHHHHHHHHHHHHS------C-----CSEEECSSTTTTHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHHh------C-----CcEEEecCCCCccHHHHH
Confidence            4568889999999999321      1     139999996 89999874

>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A

Probab=86.17  E-value=1.5  Score=40.76  Aligned_cols=86  Identities=12%  Similarity=0.093  Sum_probs=50.5

Q ss_pred             CCCceeeeecccccCC-CCCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHH
Q 025404          133 RGPKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (253)
Q Consensus       133 ~~~~~~~~dcE~~g~~-~~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~  211 (253)
                      ...++.++|.|+++.. .+.....+..++..+.++...+.               +..+....+...++..++...+.++
T Consensus       133 ~~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t---------------~~~i~~~~v~~~~~E~~LL~~f~~~  197 (775)
T 1qht_A          133 EELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVIT---------------WKKIDLPYVDVVSTEKEMIKRFLRV  197 (775)
T ss_dssp             CCCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEE---------------SSCCCCSSEEECSCHHHHHHHHHHH
T ss_pred             CCcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEe---------------eccccccceEEcCCHHHHHHHHHHH
Confidence            4667899999999843 22112222444444333322111               0112223355567888999999999


Q ss_pred             HhcCCCCCcccccCCCCeEEEeec-hhhhhhhhc
Q 025404          212 LNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR  244 (253)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~  244 (253)
                      +..        .+-   .+||||| ..||+.+|.
T Consensus       198 i~~--------~dP---DiivGyN~~~FDlpyL~  220 (775)
T 1qht_A          198 VRE--------KDP---DVLITYNGDNFDFAYLK  220 (775)
T ss_dssp             HHH--------HCC---SEEEESSTTTTHHHHHH
T ss_pred             HHh--------cCC---CEEEEeCCCCccHHHHH
Confidence            931        111   2999999 579999874

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=85.31  E-value=0.28  Score=31.97  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=21.1

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~  108 (253)
                      |-+||+.|.   .|++|+++|+|-.|..
T Consensus        24 ClecGK~fK---~LkRHL~~~hgltpee   48 (87)
T 2jsp_A           24 CLECGGSFK---SLKRHLTTHHSMTPEE   48 (87)
T ss_dssp             CTBTCCEES---BHHHHHHHTTCSCHHH
T ss_pred             ecccchhhH---HHHHHHHHccCCCHHH
Confidence            888999998   4889999988887754

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1

Probab=84.03  E-value=3.1  Score=39.12  Aligned_cols=95  Identities=14%  Similarity=0.070  Sum_probs=53.4

Q ss_pred             cCCCceeeeeccc-ccC--C-CCCcc--cccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHH
Q 025404          132 CRGPKAVAMDCEM-VGG--G-SNGTL--DLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (253)
Q Consensus       132 ~~~~~~~~~dcE~-~g~--~-~~~~~--~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~  205 (253)
                      ..+.++.++|.|+ ++.  + ++...  ..+..+++++.+|...+ ..+++... ..-...   |....+....+..++.
T Consensus       187 ~p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~-~~~~~~~~-~~~~~~---i~~~~v~~~~~E~~LL  261 (847)
T 1s5j_A          187 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKV-LVLNRNDV-NEGSVK---LDGISVERFNTEYELL  261 (847)
T ss_dssp             CCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEE-EEECSSCC-CCCCEE---ETTEEEEEESSHHHHH
T ss_pred             CCCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEE-EEEeCCcc-cccccC---CCCCeEEEeCCHHHHH
Confidence            3456789999999 642  1 22211  12255566655554321 12233211 000011   1222344457899999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhc
Q 025404          206 DKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR  244 (253)
Q Consensus       206 ~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~  244 (253)
                      ..+.++|.             .-.+||||| ..||+.+|.
T Consensus       262 ~~f~~~i~-------------~~diivgyN~~~FDlPyL~  288 (847)
T 1s5j_A          262 GRFFDILL-------------EYPIVLTFNGDDFDLPYIY  288 (847)
T ss_dssp             HHHHHHHT-------------TCSEEEESSTTTTHHHHHH
T ss_pred             HHHHHHhc-------------cCCEEEEeCCCCchHHHHH
Confidence            99999993             123999999 579999885

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=82.52  E-value=1.4  Score=27.66  Aligned_cols=48  Identities=21%  Similarity=0.355  Sum_probs=25.0

Q ss_pred             CCcccc-cccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404           12 TARHKC-VACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        12 ~k~~~C-~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      -.+-.| ..|+..+.. ..|..|+..  .-..+. .|..|+..|.. ..|..|.
T Consensus        14 ~~~v~C~~~C~~~v~r-~~l~~H~~~--~C~~r~v~C~~C~~~~~~-~~l~~H~   63 (76)
T 2yuc_A           14 FNVIPCPNRCPMKLSR-RDLPAHLQH--DCPKRRLKCEFCGCDFSG-EAYESHE   63 (76)
T ss_dssp             CSCCBCTTCCSCBCCS-SSSTTTTTT--SCTTSCCCCSSSCCCCCH-HHHHHTT
T ss_pred             CcccCCCccccHHhhH-hHHHhhCHh--hCCCcceECCCCCCccCH-HHHHHHH
Confidence            345566 456665543 345555543  333444 66666666543 3355664

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=82.46  E-value=1.3  Score=23.55  Aligned_cols=26  Identities=15%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             CCCcccccccccccCCHHHHHHhhhh
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      ...++.|..|+-.|.....+..|++-
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             ccCcCeeccccceehhhHHHhhhhee
Confidence            34667888888888888888888764

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=82.25  E-value=0.61  Score=31.52  Aligned_cols=26  Identities=19%  Similarity=0.457  Sum_probs=17.5

Q ss_pred             ccccccccccCHHHHhhhhCCCCCCCcCCccc
Q 025404           45 KCAVCQKLSKSFESLREHLTGPLSKAHCSGIF   76 (253)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~~~~C~~C~~~f   76 (253)
                      +|..||..|.      .-+.+|-.|+.|+...
T Consensus        69 ~C~~CG~~F~------~~~~kPsrCP~CkSe~   94 (105)
T 2gmg_A           69 QCRKCGFVFK------AEINIPSRCPKCKSEW   94 (105)
T ss_dssp             BBTTTCCBCC------CCSSCCSSCSSSCCCC
T ss_pred             ChhhCcCeec------ccCCCCCCCcCCCCCc
Confidence            8999999881      1225567787776544

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=80.38  E-value=1.2  Score=23.48  Aligned_cols=20  Identities=45%  Similarity=0.787  Sum_probs=17.1

Q ss_pred             ccccccccCChHHHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHKEA  100 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~  100 (253)
                      |+.|.+.|.+...|..|...
T Consensus         8 CP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            8 CPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             CTTTCCEESSHHHHHHHHHH
T ss_pred             CcHHHHHcCCHHHHHHHHHh
Confidence            88888999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1wlja_	173	c.55.3.5 (A:) Interferon-stimulated gene 20 kDa pr	5e-07
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.004

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 5e-07
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           VAMDCEMVG          AR  LV+    V++  +++P+  +T+YR  V+G+T + +  
Sbjct: 3   VAMDCEMVGL-GPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 61

Query: 198 AMPLKEVKDKILE 210
           A P    + +IL+
Sbjct: 62  ATPFAVARLEILQ 74

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 31.8 bits (73), Expect = 0.004
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 15 HKCVACYKQFKRKDHLIEHMKI 36
            C  C + F R++HL  H + 
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRS 24

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1wlja_	173	Interferon-stimulated gene 20 kDa protein, ISG20 {	99.8
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.55
d2guia1	174	N-terminal exonuclease domain of the epsilon subun	99.41
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.23
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.17
d3b6oa1	226	Three prime repair exonuclease 1, TREX1 {Mouse (Mu	99.17
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.13
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.12
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.12
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.1
d1y97a1	228	Three prime repair exonuclease 2, TREX2 {Human (Ho	99.08
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.04
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.03
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.97
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.96
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.94
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.92
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.91
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.87
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.86
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.82
d1w0ha_	200	Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960	98.81
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.79
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.78
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.77
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.71
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.66
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.64
d2qxfa1	467	Exonuclease I {Escherichia coli K12 (Escherichia c	98.64
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.63
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.62
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.6
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.59
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.59
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.56
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.53
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.53
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.52
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.51
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.47
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.43
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.38
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.34
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.34
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.23
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.22
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.12
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.98
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.98
d2f96a1	202	Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287	97.94
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.9
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.9
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.78
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.62
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.57
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.56
d2igia1	180	Oligoribonuclease {Escherichia coli [TaxId: 562]}	97.44
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.38
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.35
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.3
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.3
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.26
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.25
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.25
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.25
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.22
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.18
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.12
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.1
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.0
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.98
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.96
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.88
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.87
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.81
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.73
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.68
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.64
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.61
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.55
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.51
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.43
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.88
d1x9ma1	204	Exonuclease domain of T7 DNA polymerase {Bacteriop	95.58
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.52
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.47
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.31
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.16
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.9
d1kfsa1	195	Exonuclease domain of prokaryotic DNA polymerase {	94.84
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.82
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.53
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.43
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.31
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.28
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.14
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.08
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.73
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.54
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.38
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	91.97
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.83
d1yt3a3	193	Ribonuclease D, catalytic domain {Escherichia coli	91.27
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	91.06
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.78
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.6
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.1
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	89.96
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.94
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	89.63
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	89.18
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	88.83
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	88.39
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	87.99
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	87.97
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	87.57
d1tgoa1	347	Exonuclease domain of family B DNA polymerases {Ar	87.24
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	86.52
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	85.0
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	84.98
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	84.97
d2hbka2	292	Exosome complex exonuclease RRP6 {Baker's yeast (S	81.27
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	80.86
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	80.73
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	80.58

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2e-20  Score=141.97  Aligned_cols=101  Identities=37%  Similarity=0.680  Sum_probs=91.6

Q ss_pred             ceeeeecccccCCCCCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhcC
Q 025404          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (253)
Q Consensus       136 ~~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~~  215 (253)
                      .++++||||||........+ ..+.+++.+|+++++.+++|..++++++++++|||++++.++++|+++++++.+++   
T Consensus         1 ~~v~iD~EttGl~~~~~~ii-~~~~iv~~~g~~i~~~~v~p~~~i~~~~~~i~GIt~e~~~~~~~~~~~~~~~~~~~---   76 (173)
T d1wlja_           1 EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLL---   76 (173)
T ss_dssp             CEEEEEEEEEEETTTTEEEE-EEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH---
T ss_pred             CEEEEEEEcCCCCCCCCcEE-EEEEEEEecCeEEEEEeeecccccCcceeEEecCcchhhhcCCcHHHHHHHHHhhc---
Confidence            36899999999876555444 77888899999999999999999999999999999999999999999999999999   


Q ss_pred             CCCCcccccCCCCeEEEeechhhhhhhhcCCCCCCC
Q 025404          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM  251 (253)
Q Consensus       216 ~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~~~~~  251 (253)
                                 .+.+|||||+.||++||+...++..
T Consensus        77 -----------~~~~lv~hn~~fD~~~L~~~~~~~~  101 (173)
T d1wlja_          77 -----------KGKLVVGHDLKHDFQALKEDMSGYT  101 (173)
T ss_dssp             -----------TTSEEEESSHHHHHHHTTCCCTTCE
T ss_pred             -----------ccceEEeechHhHHHHHHHhhccCc
Confidence                       7889999999999999999888754

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.7e-16  Score=92.48  Aligned_cols=49  Identities=33%  Similarity=0.520  Sum_probs=46.3

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      ||||+| .||+.|.....|..|+++  |++++| .|.+||+.|.+.++|..|+
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~--Ht~ekpy~C~~C~k~F~~~~~L~~H~   50 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSM--HLGLRPYGCGVCGKKFKMKHHLVGHM   50 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHH--HSCCCSEECTTTSCEESSSHHHHHHH
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhc--cccccCCcCCCcCCEecCHHHHHHHH
Confidence            799999 599999999999999999  999999 9999999999999999886

>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=5.6e-14  Score=105.60  Aligned_cols=94  Identities=21%  Similarity=0.434  Sum_probs=80.4

Q ss_pred             eeeeecccccCCC-------CCcccccceeeeecCCCCe---EEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHH
Q 025404          137 AVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENV---IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (253)
Q Consensus       137 ~~~~dcE~~g~~~-------~~~~~ll~~v~iv~~~~~~---~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~  206 (253)
                      ++++|+||||...       +.++++ +.+.+.  ++.+   .++.+|+|..++.....+++||+++++.+++++.+++.
T Consensus         2 ~vv~D~ETTGl~~~~~~~~~d~IIeI-g~v~~~--~~~~~~~~~~~~v~P~~~i~~~~~~i~gIt~e~~~~~~~~~~~~~   78 (174)
T d2guia1           2 QIVLDTETTGMNQIGAHYEGHKIIEI-GAVEVV--NRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVAD   78 (174)
T ss_dssp             EEEEEEEESCCCSSSSTTTTCCEEEE-EEEEEE--TTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHHHH
T ss_pred             EEEEEeeCCCCCcccccCCCCEEEEE-EEEEEE--CCEEeeeEEEEEeccCccchhhhhhccccchhhhhcchhHHHHHH
Confidence            6899999999753       346676 766653  3333   58999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                      ++.+++              ++..+||||..||+.+|+...
T Consensus        79 ~~~~~~--------------~~~~~v~~~~~~d~~~~~~~~  105 (174)
T d2guia1          79 EFMDYI--------------RGAELVIHNAAFDIGFMDYEF  105 (174)
T ss_dssp             HHHHHH--------------TTSEEEETTHHHHHHHHHHHH
T ss_pred             HHHHhc--------------CCCeEEEeecchhhHHHHHHH
Confidence            999999              788999999999999987643

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.4e-12  Score=78.10  Aligned_cols=44  Identities=16%  Similarity=0.112  Sum_probs=36.5

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCC---ccccCccchhhhhhccc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGA  125 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~---C~~~f~~~~~l~~h~~~  125 (253)
                      |+ ||++|.+.+.|..|+++|++++||.   |+++|.+.+.|..|++.
T Consensus         6 C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           6 CQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            53 7788888888888888888888886   88888888888888754

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.5e-12  Score=70.69  Aligned_cols=37  Identities=41%  Similarity=0.756  Sum_probs=33.6

Q ss_pred             CCCCcccccccccccCCHHHHHHhhh-hcCCCCCcc-cccc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAV   48 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~~~-~C~~   48 (253)
                      +.+|||+|+.||+.|.+.++|..|++ +  |++++| +|++
T Consensus         1 s~~Kpy~C~~Cgk~F~~~~~L~~H~r~~--Ht~ekpy~C~i   39 (39)
T d2epsa1           1 SVGKPYICQSCGKGFSRPDHLNGHIKQV--HTSERPHKCQV   39 (39)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHT--SCCCCCCCSSS
T ss_pred             CCCCCccCCCCCCCcCChHHhhccCcCc--cCCCcCcCCcC
Confidence            35899999999999999999999986 7  999999 9864

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.3e-12  Score=66.63  Aligned_cols=31  Identities=29%  Similarity=0.595  Sum_probs=29.6

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      +|||||+|..|++.|.+.+.|..|+++  |+|+
T Consensus         3 Tgekpy~C~~Cgk~F~~~~~L~~H~r~--HtgE   33 (33)
T d1x6ea1           3 SGEKPYGCVECGKAFSRSSILVQHQRV--HTGE   33 (33)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHG--GGCS
T ss_pred             CCCCCeeCCCCCCEeCchHHhHhhccc--cCCC
Confidence            689999999999999999999999999  9985

>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 1, TREX1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=5.6e-12  Score=98.80  Aligned_cols=101  Identities=15%  Similarity=0.131  Sum_probs=72.3

Q ss_pred             CceeeeecccccCC--CCCcccccceeeeecC-----------------C--CCeEEeeeccCCCCcccceeeeccCCHH
Q 025404          135 PKAVAMDCEMVGGG--SNGTLDLCARVCLVDE-----------------D--ENVIFHTYVQPQLPVTNYRYEVTGLTEE  193 (253)
Q Consensus       135 ~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~-----------------~--~~~~~~~~v~P~~~i~~~~~~~~Git~~  193 (253)
                      ..++++|+||+|..  .+.++++ +.+.+-..                 .  .-..++.+|+|..+|+++.+++||||++
T Consensus         4 ~~~v~~D~ETTGl~~~~~~Iiei-a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~~~~i~GIt~~   82 (226)
T d3b6oa1           4 QTLIFLDLEATGLPSSRPEVTEL-CLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA   82 (226)
T ss_dssp             CEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCSSCCCHHHHHHHCCCHH
T ss_pred             CeEEEEEEECCCCCCCCCceEEE-EEEEEeCCcccccccccccccccccccceeceeeeeECCCCCCCHHHHHhcCCCHH
Confidence            35789999999963  5566776 66654211                 0  1126889999999999999999999999


Q ss_pred             hhcCCC---CHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeech-hhhhhhhcCC
Q 025404          194 DIKNAM---PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRMN  246 (253)
Q Consensus       194 ~l~~~~---~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~~~  246 (253)
                      ++.+++   .++++.+.+..++..          .++..+|||||. .||+.||+-.
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~f~~~----------~~~~~~lVahN~~~FD~~~l~~~  129 (226)
T d3b6oa1          83 ELEVQGRQRFDDNLAILLRAFLQR----------QPQPCCLVAHNGDRYDFPLLQTE  129 (226)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHT----------SCSSEEEEETTTTTTHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHh----------ccCCceEEEechhHHHHHHHHHH
Confidence            998763   234455555555521          125678999995 8999999853

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=5.9e-12  Score=63.74  Aligned_cols=28  Identities=32%  Similarity=0.764  Sum_probs=26.8

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCC
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      ||||+|+.|+|.|.++++|..|+++  |+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~--HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT--HTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH--HHC
T ss_pred             CcCccCCCCcCEecccccccccCCC--ccC
Confidence            7999999999999999999999999  876

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.5e-11  Score=65.73  Aligned_cols=32  Identities=22%  Similarity=0.477  Sum_probs=29.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      .+|||||+|+.|+|.|.+++.|..|+++  |++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~--Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV--HTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG--GTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc--cCCc
Confidence            4799999999999999999999999999  8864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.12  E-value=1.7e-11  Score=62.78  Aligned_cols=29  Identities=28%  Similarity=0.654  Sum_probs=27.8

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      |||+|+.|++.|.+.+.|.+|+++  |+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~--HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc--ccCCC
Confidence            799999999999999999999999  99985

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.4e-11  Score=66.71  Aligned_cols=33  Identities=30%  Similarity=0.543  Sum_probs=30.3

Q ss_pred             CCCCCCcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      .-+++|||+|+.|+|.|...+.|..|+++  |+||
T Consensus         6 ~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~--HtGE   38 (38)
T d2cota2           6 QQRERRRYKCDECGKSFSHSSDLSKHRRT--HTGE   38 (38)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTT--TCCS
T ss_pred             ccCCCCCEecCCCCceeeCHHHHHHhCcc--CCCC
Confidence            35689999999999999999999999999  9986

>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 2, TREX2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.4e-11  Score=92.71  Aligned_cols=105  Identities=19%  Similarity=0.201  Sum_probs=74.9

Q ss_pred             ccCCCceeeeecccccCC--CCCcccccceeeeecCC----------------CCeEEeeeccCCCCcccceeeeccCCH
Q 025404          131 TCRGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDED----------------ENVIFHTYVQPQLPVTNYRYEVTGLTE  192 (253)
Q Consensus       131 ~~~~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~----------------~~~~~~~~v~P~~~i~~~~~~~~Git~  192 (253)
                      ......++++|+||+|..  .+.++++ +.+.+-+..                ....++.+|+|..+|++..++++|||+
T Consensus         4 ~~~~~~~v~~D~ETTGl~~~~~~Iiei-a~i~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~v~P~~~i~~~~~~itGIt~   82 (228)
T d1y97a1           4 APRAETFVFLDLEATGLPSVEPEIAEL-SLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSS   82 (228)
T ss_dssp             SCCCSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred             CCCCCEEEEEEEecCCcCCCCCCeEEE-EEEEEECCccccccccccccccccceecceeeEECCCCCCCHHHHHhcCCCH
Confidence            344556899999999974  4666666 666653221                112589999999999999999999999


Q ss_pred             HhhcCCC--CHHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhcC
Q 025404          193 EDIKNAM--PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRM  245 (253)
Q Consensus       193 ~~l~~~~--~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~~  245 (253)
                      ++|.+++  ++.+++.++...+.+..         +.+.++|||| +.||+.||+-
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~n~~~fD~~~l~~  129 (228)
T d1y97a1          83 EGLARCRKAGFDGAVVRTLQAFLSRQ---------AGPICLVAHNGFDYDFPLLCA  129 (228)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHTTS---------CSSEEEEETTTTTTHHHHHHH
T ss_pred             HHHHhccCcchHHHHHHHHHHHhhhc---------cCCceEEeechHHHhHHHHHH
Confidence            9998774  44455544444442322         1567999998 5899999874

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.3e-11  Score=61.57  Aligned_cols=29  Identities=38%  Similarity=0.762  Sum_probs=27.7

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      |||.|+.|++.|.++++|..|+++  |+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~--HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT--HQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG--GGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc--cCCcC
Confidence            799999999999999999999999  99875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.1e-11  Score=64.13  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      +|||||+|..|++.|.+.+.|..|+++  |+++.
T Consensus         4 TgekPy~C~~C~k~F~~~~~L~~H~r~--H~~~~   35 (36)
T d1x6ha2           4 TGEKPYACSHCDKTFRQKQLLDMHFKR--YHDPN   35 (36)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHHH--TTCSS
T ss_pred             CCCCCEECCCCCCCcCCHhHHHHhCcc--cCCCC
Confidence            699999999999999999999999999  87654

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=9e-11  Score=64.31  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=27.2

Q ss_pred             ccccccccCChHHHHHHHH-HccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKE-ACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~-~h~~~~~~~C~  110 (253)
                      |+.||++|.+.++|..|++ +|++++||+|.
T Consensus         8 C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           8 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            6778899999999999986 79999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.5e-11  Score=58.28  Aligned_cols=26  Identities=38%  Similarity=0.770  Sum_probs=24.7

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCC
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHS   40 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (253)
                      |||+|.+|||.|...+.|..|+++  |+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri--HT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI--HT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH--HH
T ss_pred             CCccCCCCcCeeccCcccccCccC--CC
Confidence            799999999999999999999999  74

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.4e-10  Score=62.42  Aligned_cols=30  Identities=20%  Similarity=0.130  Sum_probs=27.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCCCCCcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~~~C~  110 (253)
                      .+.||++|.+++.|++|+++|+|++||+|.
T Consensus         6 ~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           6 EPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            345999999999999999999999999996

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2.4e-10  Score=62.16  Aligned_cols=31  Identities=32%  Similarity=0.595  Sum_probs=27.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHhhhhcCCCC
Q 025404            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      -+|||||+|+.|++.|.+++.|..|+++  |.+
T Consensus         6 HTgeKPy~C~~C~k~F~~~~~L~~H~r~--H~~   36 (37)
T d1p7aa_           6 STGIKPFQCPDCDRSFSRSDHLALHRKR--HML   36 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGG--GTC
T ss_pred             cCCccCeEeCCCCCEecCHHHHHHHHhc--CcC
Confidence            3689999999999999999999999998  754

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.9e-10  Score=61.30  Aligned_cols=31  Identities=16%  Similarity=0.380  Sum_probs=26.9

Q ss_pred             CCCCcccccccccccCCHHHHHHhhhhcCCCC
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      +|||||+|+.|++.|.++++|+.|++.+ |++
T Consensus         4 TgekP~~C~~C~k~F~~~~~L~~H~~~~-H~~   34 (36)
T d2ct1a2           4 SGEKPYECYICHARFTQSGTMKMHILQK-HTE   34 (36)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHHH-SSS
T ss_pred             CCCCCEeCCCCcccccchHHHHHHcccc-cCC
Confidence            6899999999999999999999998653 654

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.91  E-value=3.6e-10  Score=57.69  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=23.0

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |++||++|.+.+.|.+|+++|+|||
T Consensus         5 C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           5 CEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CCCCCCCCCCchHcccccCcccCCC
Confidence            6778899999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.2e-10  Score=56.46  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.9

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |++||++|.++++|.+|+|+|+|+|
T Consensus         5 C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           5 CPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCcCCCeecchHHhhhhcCccCCcC
Confidence            6778899999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.5e-10  Score=57.86  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      .+.||++|.+.++|+.|+++|+|+|
T Consensus         7 ~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           7 WSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             STTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCCCcCcCChhHhhhhcCcccccC
Confidence            5679999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=9.5e-10  Score=56.36  Aligned_cols=28  Identities=32%  Similarity=0.691  Sum_probs=26.4

Q ss_pred             Ccccccc--cccccCCHHHHHHhhhhcCCCCC
Q 025404           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      |||.|+.  |+|.|.+.++|++|+++  |+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~--HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS--HTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH--TTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc--CcCC
Confidence            7999977  99999999999999999  9985

>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease ERI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.5e-09  Score=80.01  Aligned_cols=102  Identities=17%  Similarity=0.260  Sum_probs=72.6

Q ss_pred             ceeeeecccccC---C---CCCcccccceeeeecCCCCe--EEeeeccCC--CCcccceeeeccCCHHhhcCCCCHHHHH
Q 025404          136 KAVAMDCEMVGG---G---SNGTLDLCARVCLVDEDENV--IFHTYVQPQ--LPVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (253)
Q Consensus       136 ~~~~~dcE~~g~---~---~~~~~~ll~~v~iv~~~~~~--~~~~~v~P~--~~i~~~~~~~~Git~~~l~~~~~~~~v~  205 (253)
                      .++++|+||++.   .   ...++++ +.+.+-..++.+  .++.+|+|.  .++++...+++|||++++.+++++.+|+
T Consensus         7 ~~iv~D~EtT~~~~~~~~~~~~Iiei-gav~~d~~~~~~~~~f~~~v~P~~~~~i~~~~~~itgit~e~l~~~~~~~~~~   85 (200)
T d1w0ha_           7 YICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVL   85 (200)
T ss_dssp             EEEECCCEECCCTTCCTTSCCCEEEE-EEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHH
T ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEE-EEEEEECCCCeEEEEEEEEEecCccccCCHHHHHHHCCCHHHhhhhhhhHhHH
Confidence            378999999832   1   3335566 666553345555  589999996  4789999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCeEEEeechhhh-hhhhcC
Q 025404          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHD-LDSLRM  245 (253)
Q Consensus       206 ~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D-~~~l~~  245 (253)
                      +++.+++.+       ...+....+++++|..+| ..||+.
T Consensus        86 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~L~~  119 (200)
T d1w0ha_          86 KKVIDWMKL-------KELGTKYKYSLLTDGSWDMSKFLNI  119 (200)
T ss_dssp             HHHHHHHHH-------TTBTTTBCEEEEESSTTTTHHHHHH
T ss_pred             HHHHHHhcC-------CcEEeeeeeeeccchhhhHHHHHHH
Confidence            999999943       122223345555555555 456654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.7e-09  Score=56.02  Aligned_cols=29  Identities=31%  Similarity=0.573  Sum_probs=26.8

Q ss_pred             Ccccc--cccccccCCHHHHHHhhhhcCCCCCc
Q 025404           13 ARHKC--VACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        13 k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      |||.|  +.|+|.|.+.++|.+|+++  |+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~--HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT--HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT--TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc--ccccC
Confidence            79999  5799999999999999999  99975

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=8.4e-10  Score=55.61  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=20.8

Q ss_pred             ccccccccCChHHHHHHHHHccC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      |++|+++|.++++|..|+|+|+|
T Consensus         6 C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           6 CRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCCCcCEecccccccccCCCccC
Confidence            66788899999999999999987

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=9.8e-10  Score=56.40  Aligned_cols=28  Identities=29%  Similarity=0.524  Sum_probs=26.0

Q ss_pred             Ccccccc--cccccCCHHHHHHhhhhcCCCCC
Q 025404           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      |||.|+.  |+|.|.+.++|++|+++  |+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~--HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI--HTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH--HHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccc--cCCC
Confidence            7999966  99999999999999999  9885

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.3e-09  Score=53.20  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             cccccccCChHHHHHHHHHccCC
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      +.||++|.++++|+.|+|+|+||
T Consensus         8 ~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           8 EGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             TTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCCCceECChhHhhhhcCcCcCC
Confidence            33999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.5e-09  Score=53.86  Aligned_cols=23  Identities=17%  Similarity=0.112  Sum_probs=21.0

Q ss_pred             cccccccCChHHHHHHHHHccCC
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      +.||++|.++++|++|+|+|+||
T Consensus         8 ~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           8 EGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             TTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCCCceECcHHHcCccccccCCC
Confidence            44999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=4.5e-09  Score=56.96  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             hhhhcCCCCCcc-ccccccccccCHHHHhhhh
Q 025404           33 HMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        33 H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      |.|+  |+|++| +|++|+++|.++++|..|+
T Consensus         2 h~R~--HTgeKPy~C~~C~k~F~~~~~L~~H~   31 (37)
T d1p7aa_           2 STRG--STGIKPFQCPDCDRSFSRSDHLALHR   31 (37)
T ss_dssp             CSST--TCCSSSBCCTTTCCCBSSHHHHHHHH
T ss_pred             CCCc--cCCccCeEeCCCCCEecCHHHHHHHH
Confidence            5677  888877 7777777777777776665

>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease I
species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]

Probab=98.64  E-value=1.6e-08  Score=86.97  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=69.0

Q ss_pred             ceeeeecccccCC--CCCcccccceeeeecCCCCe--EEee-eccCC--CCcccceeeeccCCHHhhcCC-CCHHHHHHH
Q 025404          136 KAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHT-YVQPQ--LPVTNYRYEVTGLTEEDIKNA-MPLKEVKDK  207 (253)
Q Consensus       136 ~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~--~~~~-~v~P~--~~i~~~~~~~~Git~~~l~~~-~~~~~v~~~  207 (253)
                      .++++|.||+|..  .+.++++ |.| ++|.++++  .+.. +++|.  ....+....++|||++++.++ .+..++...
T Consensus         3 ~fv~~D~ETtG~~~~~d~ii~~-~ai-~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~~   80 (467)
T d2qxfa1           3 TFLFHDYETFGTHPALDRPAQF-AAI-RTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR   80 (467)
T ss_dssp             EEEEEEEEESSSCTTTSCEEEE-EEE-EECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred             eEEEEEEECCCcCCCCCcEEEE-EEE-EECCCCcEEeEEEEEeecCCCCCCCCHHHHHHhCcCHHHHHcCCCCHHHHHHH
Confidence            5799999999975  5566666 555 45666665  2333 34443  333457788999999999876 588899999


Q ss_pred             HHHHHhcCCCCCcccccCCCCeEEEe-echhhhhhhhcC
Q 025404          208 ILEILNNGESTGRLMLDDGKARLLVG-HGLEHDLDSLRM  245 (253)
Q Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~lv~-h~~~~D~~~l~~  245 (253)
                      +.+++..            .+.++|| ||+.||..||+-
T Consensus        81 i~~~~~~------------~~~~~v~~n~~~FD~~fl~~  107 (467)
T d2qxfa1          81 IHSLFTV------------PKTCILGYNNVRFDDEVTRN  107 (467)
T ss_dssp             HHHHHTS------------TTEEEEESSTTTTHHHHHHH
T ss_pred             HHHHHhc------------CCCcEEEEecchhhHHHHHH
Confidence            9999931            2445566 558999999975

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=1.6e-09  Score=62.00  Aligned_cols=35  Identities=23%  Similarity=0.527  Sum_probs=30.9

Q ss_pred             CCCCCCCcccccc--cccccCCHHHHHHhhhhcCCCCCc
Q 025404            7 LPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus         7 ~~~~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      +..+|+|||+|+.  |++.|...++|..|+++  |+|++
T Consensus        11 ~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~--Htgek   47 (47)
T d1ncsa_          11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT--HLEDR   47 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHH--HTTTC
T ss_pred             hhccCCCCeECCcCCCCccccCchHHHhhccc--ccCCC
Confidence            3456899999976  99999999999999999  99875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.9e-09  Score=54.64  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=18.7

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |.+||++|.+.+.|..|+++|+||
T Consensus        10 C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1          10 CVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             CSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CCCCCCEeCchHHhHhhccccCCC
Confidence            455677778888888888888876

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.8e-09  Score=55.92  Aligned_cols=31  Identities=45%  Similarity=0.773  Sum_probs=28.6

Q ss_pred             ccccc--cccccCCHHHHHHhhhhcCCCCCcc-ccc
Q 025404           15 HKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (253)
Q Consensus        15 ~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (253)
                      |.|+.  |++.|.+++.|++|+++  |+|++| +|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~--Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL--HSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH--HHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCe--eCCCCCEeCC
Confidence            77865  99999999999999999  999999 886

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=9.4e-09  Score=53.35  Aligned_cols=29  Identities=34%  Similarity=0.539  Sum_probs=26.5

Q ss_pred             CCcccccc--cccccCCHHHHHHhhhhcCCCCC
Q 025404           12 TARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        12 ~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      ||||.|+.  |+|.|++.++|.+|+++  |+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~--Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKS--HQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG--GTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhh--ccCC
Confidence            79999976  99999999999999999  8754

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=2.6e-09  Score=61.07  Aligned_cols=32  Identities=9%  Similarity=0.086  Sum_probs=26.8

Q ss_pred             CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCCC
Q 025404           64 TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        64 ~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      ++||.|.          .+.|+++|.+.++|+.|+++|+|+|
T Consensus        16 ekpy~C~----------~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          16 DKTFECL----------FPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTEEECC----------CTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCeECC----------cCCCCccccCchHHHhhcccccCCC
Confidence            6788774          3458889999999999999999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=7.8e-09  Score=52.37  Aligned_cols=27  Identities=30%  Similarity=0.664  Sum_probs=24.9

Q ss_pred             Ccccccc--cccccCCHHHHHHhhhhcCCCC
Q 025404           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      |||.|+.  |+|.|.+.++|++|+++  |+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~--HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI--HTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH--HHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc--cCC
Confidence            7999965  99999999999999999  876

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=6.4e-09  Score=56.74  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=15.5

Q ss_pred             cccccccCChHHHHHHHHHccCC
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      ++|||+|.+.++|..|+++|+||
T Consensus        16 ~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2          16 DECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             SSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CCCCceeeCHHHHHHhCccCCCC
Confidence            44556666777777777777765

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.3e-08  Score=49.90  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=19.9

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |++|||+|.+++.|..|+|+|+
T Consensus         5 C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           5 CLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcCeeccCcccccCccCCC
Confidence            6778899999999999999995

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3e-08  Score=46.13  Aligned_cols=26  Identities=50%  Similarity=0.827  Sum_probs=24.3

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCC
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      |++|+.|+|.|+.+..|+.||+.  |+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~--htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRC--HTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG--CCC
T ss_pred             CCccchhhhHhcchhHHHHHhhc--cCC
Confidence            68999999999999999999999  875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.4e-08  Score=54.51  Aligned_cols=25  Identities=24%  Similarity=0.611  Sum_probs=16.4

Q ss_pred             CCCCcc-ccccccccccCHHHHhhhh
Q 025404           39 HSVHQP-KCAVCQKLSKSFESLREHL   63 (253)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (253)
                      |+|++| +|+.|++.|.++++|+.|+
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~   28 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHI   28 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHH
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHc
Confidence            777776 6666666666666666664

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.7e-08  Score=54.25  Aligned_cols=23  Identities=17%  Similarity=0.145  Sum_probs=13.4

Q ss_pred             cccccccCChHHHHHHHHHccCC
Q 025404           82 NLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      .+||++|.+++.|..|+++|+++
T Consensus        12 ~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2          12 SHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             SSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCcCCHhHHHHhCcccCCC
Confidence            34455555666666666666554

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=2e-08  Score=50.79  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             cccccccCChHHHHHHHHHccC
Q 025404           82 NLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      +.|+++|.+.++|.+|+|+|+|
T Consensus         8 ~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           8 ESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             TTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCCCcEECchhHhhhhcCccCC
Confidence            3399999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=3.7e-08  Score=52.23  Aligned_cols=24  Identities=17%  Similarity=0.587  Sum_probs=15.6

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |++|++.|.++++|++|+++|+.+
T Consensus        10 C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_          10 CRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCCCcccChHHHHHHccccCCc
Confidence            444556666777777777777654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.6e-08  Score=49.33  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=27.3

Q ss_pred             cccccccccCChHHHHHHHHHccCCCCCC
Q 025404           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h~~~~~~~  108 (253)
                      +|+.|||+|.....|.+|...|++|+||.
T Consensus         7 ~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           7 ACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             EETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            59999999999999999999999999983

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2e-08  Score=50.21  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=23.9

Q ss_pred             Ccccccc--cccccCCHHHHHHhhhhcCCC
Q 025404           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHS   40 (253)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~H~   40 (253)
                      |||.|+.  |+|.|++.++|++|+++  |+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~--HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT--HA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH--HC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh--cc
Confidence            7999966  99999999999999999  75

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1e-07  Score=47.62  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=23.3

Q ss_pred             CCCCCCcCCcccccccccccccccCChHHHHHHHHHcc
Q 025404           65 GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        65 ~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      +||.|+          -+.|||+|.+.++|++|+|+|+
T Consensus         1 rPf~C~----------~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCP----------FDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCC----------STTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCC----------CCCcCCcCCCHHHHHHHHhhcc
Confidence            477774          3449999999999999999996

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=1.4e-07  Score=48.80  Aligned_cols=31  Identities=26%  Similarity=0.316  Sum_probs=25.2

Q ss_pred             CCCCCCCcCCcccccccccccccccCChHHHHHHHHHccCC
Q 025404           64 TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        64 ~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      ++||.|.          -+.|+++|.+.++|++|+++|+.+
T Consensus         1 ErP~~C~----------~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCD----------HPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCC----------CTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECc----------CCCCCCeeCCHHHHHHHhhhccCC
Confidence            4678774          344899999999999999999854

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=3e-07  Score=44.17  Aligned_cols=25  Identities=32%  Similarity=0.571  Sum_probs=23.9

Q ss_pred             CCcccccccccccCCHHHHHHhhhh
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      ||||.|+.||+.|......++|.++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh
Confidence            6999999999999999999999998

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.2e-07  Score=43.17  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=20.9

Q ss_pred             cccccccccCChHHHHHHHHHccC
Q 025404           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      .|+.|+|.|+++..|+.|||.|+|
T Consensus         3 kc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             ccchhhhHhcchhHHHHHhhccCC
Confidence            378888899999999999999976

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8.3e-07  Score=44.28  Aligned_cols=31  Identities=32%  Similarity=0.471  Sum_probs=28.1

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCCcc
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (253)
                      .|...|+.|||.|.+..+|++|...  |++++|
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhkls--hs~ekp   33 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLS--HSGEKP   33 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG--SCSCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcc--cCCCCC
Confidence            3567899999999999999999998  999987

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4e-07  Score=43.18  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |.+|||+|..++.|++|+.+|+|+
T Consensus         5 c~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           5 CAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             HHHHhHHHHHHHHHHHHhhcccCC
Confidence            888999999999999999999986

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.2e-06  Score=42.71  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=26.4

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      ||||.|+.|+..|..+..+.-|.+.  |.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs--hdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS--HDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH--HSCC
T ss_pred             CCCcccchHHHHhhccccceEeeec--ccCc
Confidence            6899999999999999999999999  7653

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=2.4e-06  Score=39.81  Aligned_cols=25  Identities=24%  Similarity=0.289  Sum_probs=23.6

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |+.|.|+|.++..|+.|-|.|+|++
T Consensus         3 cp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             CcchHHHHHHhHhhhhccccccCCC
Confidence            8889999999999999999999985

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.5e-06  Score=40.34  Aligned_cols=27  Identities=30%  Similarity=0.546  Sum_probs=24.4

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      .+-|.+|||.|...+.|++|+.+  |+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lv--htge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLV--HTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG--TSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhc--ccCC
Confidence            46799999999999999999999  9875

>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Ribonuclease T
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.94  E-value=6.6e-06  Score=61.61  Aligned_cols=99  Identities=24%  Similarity=0.279  Sum_probs=67.0

Q ss_pred             eeeecccccCC--CCCcccccceeeee-cCCCCe------EEeeeccCCCCcccceeeeccCCHHhhcCCC-C----HHH
Q 025404          138 VAMDCEMVGGG--SNGTLDLCARVCLV-DEDENV------IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM-P----LKE  203 (253)
Q Consensus       138 ~~~dcE~~g~~--~~~~~~ll~~v~iv-~~~~~~------~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~-~----~~~  203 (253)
                      +++|+||+|..  .+.++++ +.|.+. +.++..      .+...+.|..++.+...+++||+.+.+..+. .    +++
T Consensus        14 Vv~D~ETTGl~~~~~~IIei-gav~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~git~~~~~~~~~~~~~~~~~   92 (202)
T d2f96a1          14 VVVDVETGGFNSATDALLEI-AATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTE   92 (202)
T ss_dssp             EEEEEEESSSCTTTBCEEEE-EEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHH
T ss_pred             EEEEEeCCCCCCCCCceEEE-EEEEEEecccCceecceeEEEeeccCccccCCHHHHHhcCCcHHHHHhcccchhHHHHH
Confidence            78999999975  4567777 777653 334433      1233445667889999999999999987763 3    344


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCC
Q 025404          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (253)
Q Consensus       204 v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~  246 (253)
                      +...+...+..         ......++++|+..+|..+++..
T Consensus        93 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~d~~~~~~~  126 (202)
T d2f96a1          93 IFRGIRKALKA---------NGCKRAILVGHNSSFDLGFLNAA  126 (202)
T ss_dssp             HHHHHHHHHHH---------TTCSEEEEEETTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---------hcccccceeeeehhhhHHHHHHH
Confidence            44444445421         11245689999999999998753

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.8e-06  Score=39.95  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=26.6

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      |+||+|..|...-...+.|..|.+.  |+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~--htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRS--HTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT--CCSC
T ss_pred             CCcceeeecccccCCchheEEeeec--ccCc
Confidence            6899999999999999999999999  9873

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.2e-06  Score=41.17  Aligned_cols=29  Identities=28%  Similarity=0.356  Sum_probs=24.0

Q ss_pred             CCCCCCcCCcccccccccccccccCChHHHHHHHHHccC
Q 025404           65 GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        65 ~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      +||.|...|          |+|++...++|+.|++.++|
T Consensus         1 KPY~Ck~~g----------C~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPG----------CTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTT----------TCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCC----------CCcccCCHHHHHHHHHhhCC
Confidence            467776544          99999999999999998775

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=7.2e-06  Score=38.62  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=24.7

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCC
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHS   40 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (253)
                      |||+|..|+..-...++|+.|+++  |+
T Consensus         2 kp~kck~cdyaaadsssl~kh~ri--hs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRI--HS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH--SC
T ss_pred             CCcccccccchhcchhhHhhhhhc--cc
Confidence            799999999999999999999999  76

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2.3e-05  Score=37.42  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             ccccccccCChHHHHHHHHHccCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      |+.||.....++-|+.|+|+|++++
T Consensus         4 C~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           4 CEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccCcccCCHHHHHHHHHHhcCCC
Confidence            7888888999999999999999875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=1.9e-05  Score=36.71  Aligned_cols=26  Identities=31%  Similarity=0.499  Sum_probs=23.9

Q ss_pred             cccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           16 KCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        16 ~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      +|+.|.|+|..+..|+.|-+.  |+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~--htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK--HTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH--HSSCC
T ss_pred             cCcchHHHHHHhHhhhhcccc--ccCCC
Confidence            699999999999999999999  99874

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.3e-05  Score=38.03  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=21.9

Q ss_pred             Cccccc--ccccccCCHHHHHHhhhh
Q 025404           13 ARHKCV--ACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        13 k~~~C~--~C~k~f~~~~~l~~H~~~   36 (253)
                      |||.|.  .|+|.|...++|..|++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHh
Confidence            699995  599999999999999997

>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Oligoribonuclease
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=7.5e-05  Score=54.50  Aligned_cols=104  Identities=18%  Similarity=0.176  Sum_probs=65.4

Q ss_pred             CCceeeeecccccCC--CCCcccccceeeeecCCCCeE---EeeeccCCC-------CcccceeeeccCCHHhhcCCCCH
Q 025404          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQPQL-------PVTNYRYEVTGLTEEDIKNAMPL  201 (253)
Q Consensus       134 ~~~~~~~dcE~~g~~--~~~~~~ll~~v~iv~~~~~~~---~~~~v~P~~-------~i~~~~~~~~Git~~~l~~~~~~  201 (253)
                      ..+++++|+||||..  .+.++++ |.|.+ +.++...   ....+.|..       .+........+.........+.+
T Consensus         4 ~~~lv~lD~ETTGLdp~~d~IIeI-aaV~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T d2igia1           4 ENNLIWIDLEMTGLDPERDRIIEI-ATLVT-DANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGD   81 (180)
T ss_dssp             GGCEEEEEEEESSSCTTTCCEEEE-EEEEE-CTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCH
T ss_pred             CCCEEEEEEECCCCCCCCCeEEEE-EEEEE-ECCceEeeccceeeeeccccccccccccccccccccchhhhhccccccH
Confidence            346889999999975  5567776 66654 3344332   222233321       12223344456666667778888


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       202 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                      ..+...+..+...        .......++++||+.||+.+|+...
T Consensus        82 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~FD~~~l~~~~  119 (180)
T d2igia1          82 REAELATLEFLKQ--------WVPAGKSPICGNSIGQDRRFLFKYM  119 (180)
T ss_dssp             HHHHHHHHHHHTT--------TSCTTTSCEEESSHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh--------hccCCCcEEEechhcchhHHHHHHh
Confidence            8888888877721        1112346889999999999998644

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=7.2e-05  Score=35.63  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=25.0

Q ss_pred             ccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           15 HKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      |-|+.|+......+.|+.|.++  |++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs--HT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT--HTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH--TSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHH--hcCCC
Confidence            7899999999999999999999  99864

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.35  E-value=1.9e-05  Score=37.77  Aligned_cols=28  Identities=29%  Similarity=0.484  Sum_probs=24.9

Q ss_pred             Ccccc--cccccccCCHHHHHHhhhhcCCCCC
Q 025404           13 ARHKC--VACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        13 k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      |||+|  +.|.|.|.+..+|.+|..+  |+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~t--htge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLT--HTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHH--HHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhcc--ccCC
Confidence            68999  5799999999999999998  8874

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.30  E-value=5.3e-05  Score=36.01  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=21.5

Q ss_pred             Cccccc--ccccccCCHHHHHHhhhh
Q 025404           13 ARHKCV--ACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        13 k~~~C~--~C~k~f~~~~~l~~H~~~   36 (253)
                      .||+|+  .|++.|+..+.|++|.++
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhc
Confidence            589994  699999999999999988

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=6.8e-05  Score=39.43  Aligned_cols=26  Identities=23%  Similarity=0.500  Sum_probs=23.4

Q ss_pred             CCCCcccccccccccCCHHHHHHhhh
Q 025404           10 RSTARHKCVACYKQFKRKDHLIEHMK   35 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~   35 (253)
                      +|-|||.|..|+|.|-...++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            47799999999999999999999974

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.26  E-value=0.00013  Score=33.31  Aligned_cols=24  Identities=33%  Similarity=0.664  Sum_probs=21.9

Q ss_pred             ccccccccccCCHHHHHHhhhhcCCC
Q 025404           15 HKCVACYKQFKRKDHLIEHMKISYHS   40 (253)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (253)
                      |+|..|.+.|..++.|.+|+++  |.
T Consensus         1 ykcglcersfveksalsrhqrv--hk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV--HK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG--TC
T ss_pred             CcccchHHHHHHHHHHHHHHHh--hc
Confidence            7899999999999999999998  64

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=6.7e-05  Score=34.23  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=21.1

Q ss_pred             CcccccccccccCCHHHHHHhhh
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMK   35 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~   35 (253)
                      .||+|..|...|-++..|+.||.
T Consensus         1 mpykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999985

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=6.3e-05  Score=35.85  Aligned_cols=23  Identities=39%  Similarity=0.647  Sum_probs=21.5

Q ss_pred             cccccccccccCCHHHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      ||.|..|...|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            78999999999999999999976

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=4.7e-05  Score=36.39  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=17.5

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |..||+.|..+...++|.++|.
T Consensus         6 C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           6 CDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CTTTCCEESSHHHHHHHHGGGC
T ss_pred             cchhhhhhhcchhhhhhhhhcc
Confidence            5667788888888888888874

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.22  E-value=0.00012  Score=38.20  Aligned_cols=30  Identities=23%  Similarity=0.523  Sum_probs=26.2

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCCc
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (253)
                      .+.|+|..|++.|.+...|--||+.  |..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~--Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNV--HRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHT--TCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhh--hcchH
Confidence            4679999999999999999999999  76543

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0001  Score=35.24  Aligned_cols=29  Identities=24%  Similarity=0.366  Sum_probs=24.5

Q ss_pred             CcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      |||.|..|...-...++|+.|+++- |+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk-hske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK-HSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH-TSSC
T ss_pred             CCccccccccccccchhhhhhhhcc-cccC
Confidence            6999999999999999999999873 5543

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00015  Score=34.42  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=26.4

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCC
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      |..|.|..|...|...-.|..||-.  |+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvs--htge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVS--HTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH--HSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeec--ccCC
Confidence            5679999999999999999999998  8875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00014  Score=34.54  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=22.4

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |..|...|.+...|+.||-.|+|+
T Consensus         7 cs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           7 CSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eHHHHHHHHHHHhheeeeecccCC
Confidence            888999999999999999999986

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.00  E-value=0.0002  Score=33.98  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=16.9

Q ss_pred             cccccccCChHHHHHHHHHc
Q 025404           82 NLCMNIFDSPSSLIKHKEAC  101 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h  101 (253)
                      +.|++.|...+-|++|.++|
T Consensus         9 egcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           9 EGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             TTCCCEESSHHHHHHHHHHH
T ss_pred             cCccccccCHHHHhhhhhcc
Confidence            34888899999999998887

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00012  Score=34.64  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=19.3

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |..|...-.+++.|..|+|.|+|.
T Consensus         6 cqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           6 CQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             eeecccccCCchheEEeeecccCc
Confidence            455666677899999999999874

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.96  E-value=0.00018  Score=34.32  Aligned_cols=30  Identities=20%  Similarity=0.196  Sum_probs=24.7

Q ss_pred             CCCCCCcCCcccccccccccccccCChHHHHHHHHHccCC
Q 025404           65 GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        65 ~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      +||+|.          -+.|.|.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~----------~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCK----------EEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECC----------CSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcc----------cccccccchhhhhhhhhhccccCC
Confidence            477774          344889999999999999999886

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=8.2e-05  Score=36.39  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=23.1

Q ss_pred             Ccccccc--cccccCCHHHHHHhh-hhcCCCC
Q 025404           13 ARHKCVA--CYKQFKRKDHLIEHM-KISYHSV   41 (253)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~-~~~~H~~   41 (253)
                      |||.|+.  |.|.|+..+.-..|+ |+  |+.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT--Hs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT--HSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT--TCS
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc--ccC
Confidence            6999955  999999999989997 77  765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00039  Score=33.59  Aligned_cols=24  Identities=21%  Similarity=0.330  Sum_probs=20.8

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |+.|+..|+++.-+.-|.|.|.|.
T Consensus         6 cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           6 CPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             ETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             cchHHHHhhccccceEeeecccCc
Confidence            677888889999999999999875

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00047  Score=34.88  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |.-=++.|.....|..|+|+|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            666778899999999999999986

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0004  Score=33.10  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=21.9

Q ss_pred             CcccccccccccCCHHHHHHhhhh
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      +||+|+.|...-.+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            699999999999999999999875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.68  E-value=0.00044  Score=36.01  Aligned_cols=26  Identities=23%  Similarity=0.407  Sum_probs=22.8

Q ss_pred             cccccccccCChHHHHHHHHHccCCC
Q 025404           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h~~~~  105 (253)
                      .|..|++.|.+...|-.||+.|..++
T Consensus         7 ~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           7 TCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             ECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCCCCCCccCCcccccchHhhhcchH
Confidence            38889999999999999999997665

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.64  E-value=0.00039  Score=31.63  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=18.9

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |..|.++|..++.|.+|+|+|.
T Consensus         3 cglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           3 CGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccchHHHHHHHHHHHHHHHhhc
Confidence            7778889999999999998884

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00051  Score=35.50  Aligned_cols=26  Identities=27%  Similarity=0.531  Sum_probs=24.0

Q ss_pred             CCCcccc--cccccccCCHHHHHHhhhh
Q 025404           11 STARHKC--VACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        11 ~~k~~~C--~~C~k~f~~~~~l~~H~~~   36 (253)
                      .+|||.|  +.|+..|....+|..|...
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhh
Confidence            4899999  7899999999999999877

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.00071  Score=31.54  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=19.2

Q ss_pred             cccccccccccCCHHHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      ||+|..|||.|..+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            78899999999999888888643

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.51  E-value=0.00079  Score=32.81  Aligned_cols=27  Identities=37%  Similarity=0.610  Sum_probs=22.5

Q ss_pred             cccccccccccCCHHHHHHhhhhcCCCC
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      ||.|..|++.|+.+..|.+|+..- |.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKl-H~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKI-HSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTT-SCC
T ss_pred             CcccccccchhhHHHHHHHHHHHH-hcC
Confidence            799999999999999999987542 765

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00037  Score=34.02  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=18.0

Q ss_pred             cccccccCChHHHHHHH-HHccCC
Q 025404           82 NLCMNIFDSPSSLIKHK-EACSLS  104 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~-~~h~~~  104 (253)
                      +.|.|+|++.+.-..|+ |+|+.+
T Consensus         8 ~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           8 EGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             TTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CChhhhhcchhhhhhhccccccCC
Confidence            44888888888888897 888653

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.88  E-value=0.0023  Score=29.15  Aligned_cols=23  Identities=43%  Similarity=0.898  Sum_probs=20.7

Q ss_pred             cccccccccccCCHHHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      .|.|+.|-|.|..+.++..|.++
T Consensus         1 vypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEE
Confidence            37899999999999999999875

>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of T7 DNA polymerase
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.58  E-value=0.013  Score=43.09  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCCCeEEEeec-hhhhhhhhc
Q 025404          201 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR  244 (253)
Q Consensus       201 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~lv~h~-~~~D~~~l~  244 (253)
                      ..+..+.+.+++.             ...+||||| ..||+.+|+
T Consensus        39 ~~~~l~~~~~~l~-------------~~D~ivghN~~~FD~P~L~   70 (204)
T d1x9ma1          39 FGAYLDALEAEVA-------------RGGLIVFHNGHKYDVPALT   70 (204)
T ss_dssp             HHHHHHHHHHHHH-------------TTCCEEESSTTTTHHHHHH
T ss_pred             chhHHHHHHHHHh-------------cCCEEEEEccccccHHHHH
Confidence            4567778888884             445999999 789999996

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0042  Score=29.04  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             cccccccccccCCHHHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      |-+|+.|....+.+..|+.|.++
T Consensus         2 pekc~ecsyscsskaalrvh~ri   24 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERI   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG
T ss_pred             CccCcccccccCcHHHHHHhhcc
Confidence            56899999999999999999988

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0048  Score=28.75  Aligned_cols=22  Identities=36%  Similarity=0.437  Sum_probs=18.8

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |..|..+-...++|..|+|+|+
T Consensus         6 ck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           6 CKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSSSCCEESSHHHHHHHHHHSC
T ss_pred             cccccchhcchhhHhhhhhccc
Confidence            6667778888999999999996

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0037  Score=32.62  Aligned_cols=18  Identities=33%  Similarity=0.678  Sum_probs=8.3

Q ss_pred             ccccccccCChHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHK   98 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~   98 (253)
                      |..|+|.|-...++.+|.
T Consensus         8 C~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           8 CNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CSSSCCEESCHHHHHHHH
T ss_pred             ccchhhhhhhHHHHHHhh
Confidence            334444444455554443

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0043  Score=29.01  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=18.8

Q ss_pred             cccccccccCChHHHHHHHHHcc
Q 025404           80 GCNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      +|+.|..+.+++..|+.|.|+|-
T Consensus         4 kc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGGC
T ss_pred             cCcccccccCcHHHHHHhhcccc
Confidence            37778888888899999988884

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0076  Score=28.47  Aligned_cols=20  Identities=30%  Similarity=0.660  Sum_probs=15.7

Q ss_pred             ccccccccCChHHHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHKEA  100 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~  100 (253)
                      |..|+.+|..+.+|..||..
T Consensus         4 C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           4 CTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHHS
T ss_pred             cceeeeeEeeccchhHhhhh
Confidence            66777888888888888864

>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of prokaryotic DNA polymerase
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.036  Score=40.13  Aligned_cols=83  Identities=16%  Similarity=0.133  Sum_probs=49.8

Q ss_pred             ceeeeecccccCCCCCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHHHHhcC
Q 025404          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (253)
Q Consensus       136 ~~~~~dcE~~g~~~~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~~~~~~  215 (253)
                      +.+++|+|++|...-. ..+ ..+.+....+...+..+...               ........+..++.+.+..++.+ 
T Consensus        27 ~~~a~DtEt~~l~~~~-~~i-~~i~i~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~l~~~le~-   88 (195)
T d1kfsa1          27 PVFAFDTETDSLDNIS-ANL-VGLSFAIEPGVAAYIPVAHD---------------YLDAPDQISRERALELLKPLLED-   88 (195)
T ss_dssp             SSEEEEEEESCSCTTT-CCE-EEEEEEEETTEEEEEECCCC---------------STTCCCCCCHHHHHHHHHHHHTC-
T ss_pred             CeEEEEeeeCCCCccc-ccc-ccceeeccCCcccccccccc---------------cccccccccHHHHHHHHHHHHhc-
Confidence            3689999999964322 122 34444333333332222111               11112234678889999999943 


Q ss_pred             CCCCcccccCCCCeEEEeechhhhhhhhcCCC
Q 025404          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (253)
Q Consensus       216 ~~~~~~~~~~~~~~~lv~h~~~~D~~~l~~~~  247 (253)
                                 ...+.||||+.||+.+|.-..
T Consensus        89 -----------~~i~ki~hn~~~d~~~l~~~~  109 (195)
T d1kfsa1          89 -----------EKALKVGQNLKYDRGILANYG  109 (195)
T ss_dssp             -----------TTSCEEESSHHHHHHHHHTTT
T ss_pred             -----------ccceeeechHHHHHHHHHHHh
Confidence                       455789999999999998643

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0091  Score=29.62  Aligned_cols=24  Identities=21%  Similarity=0.668  Sum_probs=20.6

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      |..|||+|.+...+.+|...++|-
T Consensus         7 cskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           7 CSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ecccccchhcchHHHHHhhhcCCC
Confidence            888999999999999998887763

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.01  Score=32.09  Aligned_cols=22  Identities=27%  Similarity=0.690  Sum_probs=19.6

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |..|||.|.....|++|...|-
T Consensus         9 CG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           9 CGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ccccccccCCHHHHhHhHHhcC
Confidence            7889999999999999987773

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.01  Score=27.57  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             cccccccccccCCHHHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      .|.|+.|+.....++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            47899999999999999999875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.013  Score=30.13  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=21.8

Q ss_pred             CCCCCCCcCCcccccccccccccccCChHHHHHHHHHcc
Q 025404           64 TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        64 ~~~~~C~~C~~~f~~~~C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      ++||.|..          +.|+..|.+...|..|...|.
T Consensus         4 dkPF~C~~----------pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTA----------PGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCC----------TTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCC----------CCccccccchHHHHHhhhhhe
Confidence            46777743          448888899999999887774

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.28  E-value=0.011  Score=27.33  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=18.6

Q ss_pred             cccccccCChHHHHHHHHHcc
Q 025404           82 NLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        82 ~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      +.|+|+|+....|+.|+-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            559999999999999998885

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.0096  Score=29.90  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=18.2

Q ss_pred             cccccCCHHHHHHhhhhcCCCCC
Q 025404           20 CYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        20 C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      =++.|.....|..|+|+  |+|+
T Consensus        13 ~~~pf~a~YkLv~H~R~--HTgE   33 (33)
T d2glia2          13 ELRPFKAQYMLVVHMRR--HTGE   33 (33)
T ss_dssp             TTCCCSSHHHHHHHTHH--HHCC
T ss_pred             CCCcchhHHHHHHHHhh--cCCC
Confidence            34779999999999999  9885

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.012  Score=29.17  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=19.7

Q ss_pred             cccccccccccCCHHHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      .|-|..|+|+|..+..+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            58899999999999988888765

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.73  E-value=0.027  Score=26.00  Aligned_cols=18  Identities=22%  Similarity=0.599  Sum_probs=10.4

Q ss_pred             ccccccccCChHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHK   98 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~   98 (253)
                      |..|||-|-++.+|..|.
T Consensus         4 c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           4 CPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             CTTTCCBCSSHHHHHHHH
T ss_pred             cccchhhhhhHhHHHHHH
Confidence            445555566666666664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.041  Score=29.65  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             CcccccccccccCCHHHHHHhhhh
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      -.|.|..|+|.|.....|+.|...
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQ   28 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQ   28 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHh
Confidence            457899999999999889888876

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.028  Score=26.22  Aligned_cols=19  Identities=26%  Similarity=0.468  Sum_probs=16.5

Q ss_pred             ccccccCChHHHHHHHHHc
Q 025404           83 LCMNIFDSPSSLIKHKEAC  101 (253)
Q Consensus        83 ~C~k~f~~~~~l~~H~~~h  101 (253)
                      .|+|.|...+.++.|+-+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3889999999999998766

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.97  E-value=0.032  Score=25.09  Aligned_cols=18  Identities=28%  Similarity=0.560  Sum_probs=9.0

Q ss_pred             ccccccccCChHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHK   98 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~   98 (253)
                      |..|...|-++..|..||
T Consensus         5 csscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           5 CSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             CSSSCCEESSHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            334444555555555554

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.045  Score=32.48  Aligned_cols=26  Identities=27%  Similarity=0.622  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCCHHHHHHhhhh
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      |..-|-|..|+|.|.+...|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            55569999999999999999999875

>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Ribonuclease D, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.21  Score=36.24  Aligned_cols=19  Identities=16%  Similarity=0.022  Sum_probs=15.9

Q ss_pred             CCeEEEeechhhhhhhhcC
Q 025404          227 KARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       227 ~~~~lv~h~~~~D~~~l~~  245 (253)
                      ...+.||||+.||+.+|.-
T Consensus        73 ~~i~Kv~hn~~~D~~~L~~   91 (193)
T d1yt3a3          73 PSITKFLHAGSEDLEVFLN   91 (193)
T ss_dssp             TTSEEEESSCHHHHHHHHH
T ss_pred             CCceEEEecchhhhhhhhh
Confidence            5567899999999999853

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.082  Score=24.43  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=17.8

Q ss_pred             cccccccccCChHHHHHHHHHc
Q 025404           80 GCNLCMNIFDSPSSLIKHKEAC  101 (253)
Q Consensus        80 ~C~~C~k~f~~~~~l~~H~~~h  101 (253)
                      .|+.|+-.-.+++.|+.|++.-
T Consensus         4 qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           4 HCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHT
T ss_pred             cCCcchhheeehhhhhHHhhhc
Confidence            3788888888899999998753

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.78  E-value=0.073  Score=25.44  Aligned_cols=24  Identities=13%  Similarity=0.092  Sum_probs=21.4

Q ss_pred             ccccccccCChHHHHHHHHHccCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~  104 (253)
                      -+.|+..|...-.|..|+-.|+||
T Consensus         8 f~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           8 FADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             SGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CCCcchhhccchhhhHHhhhhcCC
Confidence            567999999999999999999986

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.60  E-value=0.063  Score=25.68  Aligned_cols=28  Identities=21%  Similarity=0.436  Sum_probs=23.9

Q ss_pred             Ccccc--cccccccCCHHHHHHhhhhcCCCCC
Q 025404           13 ARHKC--VACYKQFKRKDHLIEHMKISYHSVH   42 (253)
Q Consensus        13 k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~   42 (253)
                      |.|.|  +.|+-.|.....|..|+-.  |+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLck--HTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSK--HTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHH--HHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhh--hcCC
Confidence            56778  6799999999999999988  8875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.10  E-value=0.13  Score=25.06  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=18.7

Q ss_pred             CcccccccccccCCHHHHHHhhhh
Q 025404           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      ..|.|..||-.|+..+.|..|+..
T Consensus         7 arf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cceeccccceeecChhHHHhhhhe
Confidence            347888888888888888888764

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.96  E-value=0.074  Score=26.32  Aligned_cols=27  Identities=15%  Similarity=0.407  Sum_probs=23.5

Q ss_pred             CCCcccccccccccCCHHHHHHhhhhc
Q 025404           11 STARHKCVACYKQFKRKDHLIEHMKIS   37 (253)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~   37 (253)
                      |+-.|.|..|.+.|...+++-+|..++
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            567899999999999999999997664

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.94  E-value=0.062  Score=24.65  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=18.0

Q ss_pred             ccc--cccccccCCHHHHHHhhhh
Q 025404           15 HKC--VACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        15 ~~C--~~C~k~f~~~~~l~~H~~~   36 (253)
                      |-|  +.|+|.|..-..|+.|+-+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~   25 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFS   25 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeec
Confidence            456  5799999998889999877

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=89.63  E-value=0.072  Score=25.68  Aligned_cols=20  Identities=35%  Similarity=0.777  Sum_probs=15.4

Q ss_pred             ccccccccCChHHHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHKEA  100 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~  100 (253)
                      |..|++.|.+..-|-+|+..
T Consensus         4 C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           4 CGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             CTTTCCEESSHHHHHHHHTT
T ss_pred             cccccchhhHHHHHHHHHHH
Confidence            66777888888888888753

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.14  Score=23.97  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             cccccccccccCCHHHHHHhhhh
Q 025404           14 RHKCVACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (253)
                      .|.|..|+|.......++-|...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            47899999999999888888754

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.83  E-value=0.21  Score=23.49  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=15.3

Q ss_pred             ccccccccCChHHHHHHHHHcc
Q 025404           81 CNLCMNIFDSPSSLIKHKEACS  102 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~  102 (253)
                      |..|.......++|+.|+++-+
T Consensus         5 cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           5 CQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CSSSSCCCSCSHHHHHHHHHHT
T ss_pred             ccccccccccchhhhhhhhccc
Confidence            4445556677889999987643

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.11  Score=30.02  Aligned_cols=33  Identities=21%  Similarity=0.502  Sum_probs=26.8

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHhhhhcCCCC
Q 025404            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus         7 ~~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      +...+...|.|.+|+-.|.....|..|...  |.+
T Consensus        11 ~~~~~s~~yQC~HCd~K~~s~~el~~hl~~--hne   43 (75)
T d1x6fa1          11 GPRLQNSTYQCKHCDSKLQSTAELTSHLNI--HNE   43 (75)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHH--HHH
T ss_pred             CcccCCceeeechhHHHHhhHHHHHHHHHh--ccH
Confidence            334456679999999999999999999988  653

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.11  Score=30.18  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=13.0

Q ss_pred             CCCCcccccccccccCCHHHH
Q 025404           10 RSTARHKCVACYKQFKRKDHL   30 (253)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l   30 (253)
                      ..-..|.|+.|+++|+....+
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~   30 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEAN   30 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHH
T ss_pred             ccCCceECCCCCCCcchhhHH
Confidence            344557777777777665443

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.97  E-value=0.18  Score=22.67  Aligned_cols=20  Identities=20%  Similarity=0.632  Sum_probs=16.0

Q ss_pred             ccccccccCChHHHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHKEA  100 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~  100 (253)
                      |+.|=+.|.++.++..|.++
T Consensus         4 cp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           4 CPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CTTTCCEESCHHHHHHHHHH
T ss_pred             CchhhHHhccccCceEEEEE
Confidence            67777888888888888764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.57  E-value=0.16  Score=23.83  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=17.1

Q ss_pred             ccccccccCChHHHHHHHHHccC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSL  103 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~  103 (253)
                      |..|.-..++.++|..|++..++
T Consensus         5 C~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           5 CNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHHS
T ss_pred             cceecccccCcchHHHHHHHHcc
Confidence            56676777888899988876554

>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

Probab=87.24  E-value=0.61  Score=36.86  Aligned_cols=87  Identities=14%  Similarity=0.107  Sum_probs=49.2

Q ss_pred             cCCCceeeeecccccCC-CCCcccccceeeeecCCCCeEEeeeccCCCCcccceeeeccCCHHhhcCCCCHHHHHHHHHH
Q 025404          132 CRGPKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (253)
Q Consensus       132 ~~~~~~~~~dcE~~g~~-~~~~~~ll~~v~iv~~~~~~~~~~~v~P~~~i~~~~~~~~Git~~~l~~~~~~~~v~~~l~~  210 (253)
                      ...-++.++|.|+.+.. .......+..+++.+..+.....               +-++....+..-.+..++...+.+
T Consensus       132 ~~~~r~~s~DIE~~~~~g~~~~~~~I~~Is~~~~~~~~~~~---------------~~~~~~~~v~~~~~E~~lL~~f~~  196 (347)
T d1tgoa1         132 DEELKMLAFDIETLYHEGEEFAEGPILMISYADEEGARVIT---------------WKNIDLPYVDVVSTEKEMIKRFLK  196 (347)
T ss_dssp             CCCCCEEEEEEEECCCSSSSTTCSCEEEEEEEETTEEEEEE---------------SSCCCCTTEEECSSHHHHHHHHHH
T ss_pred             CCCceEEEEEEEeccCCCCCcccCcEEEEEEecCCCcEEEE---------------ecCccCccceeeCCHHHHHHHHHH
Confidence            44556889999987532 11111112455554443333211               011111223334678888999999


Q ss_pred             HHhcCCCCCcccccCCCCeEEEeech-hhhhhhhc
Q 025404          211 ILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lv~h~~-~~D~~~l~  244 (253)
                      ++.+      .+|     .+|+|||. .||+.+|.
T Consensus       197 ~i~~------~dP-----Dii~g~N~~~FD~pyL~  220 (347)
T d1tgoa1         197 VVKE------KDP-----DVLITYNGDNFDFAYLK  220 (347)
T ss_dssp             HHHH------HCC-----SEEEESSGGGTHHHHHH
T ss_pred             HHhh------cCc-----cceeeccccCCchHHHH
Confidence            8842      111     39999996 89999883

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.52  E-value=0.25  Score=26.36  Aligned_cols=26  Identities=23%  Similarity=0.616  Sum_probs=17.0

Q ss_pred             ccccccccCChHHHHHHHHHccCCCC
Q 025404           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~~h~~~~~  106 (253)
                      |+.|+....++-+|++|+..-+-.+|
T Consensus        27 cpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          27 CPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhccC
Confidence            66777777777777777765444443

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=85.00  E-value=0.15  Score=26.05  Aligned_cols=25  Identities=28%  Similarity=0.570  Sum_probs=15.1

Q ss_pred             CCcccccccccccCCHHHHHHhhhhcCCCCCcc-ccccccc
Q 025404           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK   51 (253)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~   51 (253)
                      ++-|.|..||..               |.|+.| +|++|+.
T Consensus         3 ~~~~vC~vCGyi---------------~~g~~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYI---------------HKGEDFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCE---------------EESSCCSBCTTTCC
T ss_pred             CCEEECCCCCCE---------------eeCCCCCcCCCCCC
Confidence            455677777642               445555 7777764

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.98  E-value=0.35  Score=22.49  Aligned_cols=19  Identities=26%  Similarity=0.431  Sum_probs=16.8

Q ss_pred             cccccccCCHHHHHHhhhh
Q 025404           18 VACYKQFKRKDHLIEHMKI   36 (253)
Q Consensus        18 ~~C~k~f~~~~~l~~H~~~   36 (253)
                      +.|++.|+.+..|..|.+.
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            6799999999999998875

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=84.97  E-value=0.27  Score=22.96  Aligned_cols=23  Identities=22%  Similarity=0.557  Sum_probs=17.2

Q ss_pred             Ccccc--cccccccCCHHHHHHhhh
Q 025404           13 ARHKC--VACYKQFKRKDHLIEHMK   35 (253)
Q Consensus        13 k~~~C--~~C~k~f~~~~~l~~H~~   35 (253)
                      |.|+|  +.|+-.|.++.+++.|..
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHH
T ss_pred             CCccccCCCcceEEeehHHHHHHHh
Confidence            45677  468888888888888764

>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exosome complex exonuclease RRP6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.27  E-value=1.1  Score=34.45  Aligned_cols=19  Identities=26%  Similarity=0.114  Sum_probs=16.2

Q ss_pred             CCeEEEeechhhhhhhhcC
Q 025404          227 KARLLVGHGLEHDLDSLRM  245 (253)
Q Consensus       227 ~~~~lv~h~~~~D~~~l~~  245 (253)
                      .+.+-||||+.+|+.+|.-
T Consensus       156 ~~I~KV~H~~~~Di~~L~~  174 (292)
T d2hbka2         156 PSIVKVFHGAFMDIIWLQR  174 (292)
T ss_dssp             TTSEEEESSCHHHHHHHHH
T ss_pred             cCeEEEeechHhhhhhhhh
Confidence            5568899999999999964

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.86  E-value=0.19  Score=29.64  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=16.6

Q ss_pred             ccccccccCChHHHHHHHH
Q 025404           81 CNLCMNIFDSPSSLIKHKE   99 (253)
Q Consensus        81 C~~C~k~f~~~~~l~~H~~   99 (253)
                      |..|+|.|.+...|..|++
T Consensus        18 Cv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          18 CLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             ETTTTEECSSHHHHHHHTT
T ss_pred             cccccCccCCHHHHHHHHc
Confidence            8889999999999998863

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.73  E-value=1  Score=24.51  Aligned_cols=31  Identities=23%  Similarity=0.516  Sum_probs=25.6

Q ss_pred             CCCCcccc--cccccccCCHHHHHHhhhhcCCCC
Q 025404           10 RSTARHKC--VACYKQFKRKDHLIEHMKISYHSV   41 (253)
Q Consensus        10 ~~~k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~   41 (253)
                      +..+||.|  ..|.-.|+-..+|.-|.+.+ |..
T Consensus        16 spyrpyrcvhqgc~aaftiq~nlilhy~av-h~s   48 (61)
T d1x3ca1          16 SPYRPYRCVHQGCFAAFTIQQNLILHYQAV-HKS   48 (61)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHH-SSS
T ss_pred             CCCCceeeeccchhhhhhhhhhHHHHHHHH-hhh
Confidence            35789999  67999999999999998865 543

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.58  E-value=0.27  Score=25.26  Aligned_cols=10  Identities=20%  Similarity=0.255  Sum_probs=5.4

Q ss_pred             Cccccccccc
Q 025404           13 ARHKCVACYK   22 (253)
Q Consensus        13 k~~~C~~C~k   22 (253)
                      +.|.|..||.
T Consensus         4 ~~~~C~vCG~   13 (37)
T d1nnqa2           4 KVYICPICGY   13 (37)
T ss_dssp             CEEECTTTCC
T ss_pred             cEEECCCCCC
Confidence            3455666653