Citrus Sinensis ID: 025423

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVRGALLQDTEDDKDN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEccccccEEEEEEEcccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccHHHHcccccccccccccccccccHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHcccccccccccccccccccccccEEEEEEccccccEEEEEEcccccHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEEccccccccccHHEEEEEHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccccccccHHHccccccccccccEEEcccHHHHEcccEEccccccccc
Coil and Loop (DISEMBL)
mkiegfepifgepkaewadsrsDSLGRFLfhvsapdsshlliqvTDFRSNTWEAKRSVLQLDdmrdeigiggsWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKskgmprisisltrlTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERneniqnqplyskrqklqkmnfsdktdisasilsngsqdspdkqaaqspvaskvanrvipahrRAKVRGallqdteddkdn
Flexible Loop (DISEMBL)
mkiegfepifgepkaewADSRSDSLGRFLFHVsapdsshlliqVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAqkskgmprISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAekerneniqnqplyskrqKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVaskvanrvipahrrakvrgallqdteddkdn
Low Complexity Region (SEG)
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLekeaaaekeRNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVRGALLQDTEDDKDN
Disordered region (IsUnstruct)
************************LGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCL********************************************************************************************
Disordered Region (DISOPRED)
****GFE*IFG**************GRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHS****AAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSM***************************************************************************************A****************
Disordered Region (DISEMBL)
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASIL*******************KVANRVIPAHRRAKVRGALL*********
Disordered Region (DISPRO)
*********FGE**********DSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKER****************************************************VANRVIPAHRRAKVRGALLQ********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVRGALLQDTEDDKDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
224083464	297	predicted protein [Populus trichocarpa]	0.972	0.828	0.532	8e-78
388519441	240	unknown [Lotus japonicus]	0.936	0.987	0.558	4e-72
357519993	243	hypothetical protein MTR_8g093850 [Medic	0.948	0.987	0.568	1e-71
449459256	240	PREDICTED: uncharacterized protein LOC10	0.928	0.979	0.535	3e-69
297797403	236	hypothetical protein ARALYDRAFT_496595 [	0.913	0.978	0.487	1e-52
79547434	236	uncharacterized protein [Arabidopsis tha	0.913	0.978	0.479	5e-51
27754430	236	unknown protein [Arabidopsis thaliana] g	0.913	0.978	0.479	5e-51
8777314	245	unnamed protein product [Arabidopsis tha	0.948	0.979	0.463	9e-50
296082599	169	unnamed protein product [Vitis vinifera]	0.592	0.887	0.647	1e-49
351723845	229	uncharacterized protein LOC100305573 [Gl	0.877	0.969	0.468	2e-49

>gi|224083464|ref|XP_002307037.1| predicted protein [Populus trichocarpa] gi|222856486|gb|EEE94033.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 156/293 (53%), Positives = 196/293 (66%), Gaps = 47/293 (16%)

Query: 6   FEPIFGEPKAEWADSRSDSLG---RFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
           FEPIF EP+  WA + +   G   +FL H+ APD +HL IQVTD+ SNT+EA +SV+QLD
Sbjct: 7   FEPIFNEPRIGWAKNSNPGSGLMDQFLMHIFAPDDNHLKIQVTDYHSNTFEAVKSVMQLD 66

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD IGIGGSW+EF++Y+VAS K+EDVKL+LE  S++DG AYAK+VAQKSKGMP ISIS
Sbjct: 67  DMRDCIGIGGSWAEFVEYLVASFKAEDVKLVLEKLSDSDGVAYAKLVAQKSKGMPLISIS 126

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT+L  +AA +AMA +S  LF AF+  + L++QE+E  LQL K  +AEKER+ENIQ+Q  
Sbjct: 127 LTKLLDNAARDAMANMSFGLFKAFKRTKNLVLQEKEHSLQLTKVISAEKERSENIQSQ-- 184

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSP----------------------------- 213
             KRQKL+KMN SD+ D+S    SNG+Q+SP                             
Sbjct: 185 LGKRQKLEKMNSSDRLDVSGPPASNGAQNSPGCVLSLGGFQIICKLSASIYITECDDTVS 244

Query: 214 -------------DKQAAQSPVASKVANRVIPAHRRAKVRGALLQDTEDDKDN 253
                        DK A + P ++KV NRV+PA RRAKVRGALLQD EDDKDN
Sbjct: 245 SINKIFLNQIIDADKLAGRDPASTKVTNRVVPAFRRAKVRGALLQDIEDDKDN 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519441|gb|AFK47782.1| unknown [Lotus japonicus]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 181/249 (72%), Gaps = 12/249 (4%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQ 60
           M  E FEPIFGEPK EWA   S  L  FLFH +APDSSH+++ VTDF S+TWEA+ SV  
Sbjct: 1   MAFEDFEPIFGEPKVEWAAHSSCPLRPFLFHATAPDSSHIVVCVTDFHSDTWEARLSVSF 60

Query: 61  LDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRIS 120
           L+D+RD IGIGGSW+EF++Y V S+KSED+KL+LE +SN+DG ++AK+VAQKSKGMP I+
Sbjct: 61  LEDIRDIIGIGGSWAEFVEYFVTSLKSEDLKLVLEANSNSDGVSHAKLVAQKSKGMPLIT 120

Query: 121 ISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180
           I LT+L  SA  EAM+ LSL LF AF+++   +V+EQER + L    AAEK +NE +Q +
Sbjct: 121 IPLTKLLDSAVNEAMSNLSLNLFRAFKNITCSLVKEQERSVWLTNMIAAEKAKNETLQTE 180

Query: 181 PLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVR 240
                 QK QK++ S+K  +S    +NG + SPDKQAA+    +KV NRV+P HRR KVR
Sbjct: 181 -----YQKFQKISDSEKAGVS----TNGLKKSPDKQAARD---TKVKNRVVPVHRRTKVR 228

Query: 241 GALLQDTED 249
           GALL  ++D
Sbjct: 229 GALLHGSDD 237

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519993|ref|XP_003630285.1| hypothetical protein MTR_8g093850 [Medicago truncatula] gi|355524307|gb|AET04761.1| hypothetical protein MTR_8g093850 [Medicago truncatula]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/248 (56%), Positives = 181/248 (72%), Gaps = 8/248 (3%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQ 60
           M  + FEPIF EPK EW    S  L  FLFHV  P+SSHL+I VT+F S+TWEA  SV  
Sbjct: 1   MAFQDFEPIFAEPKLEWKPHCSHPLRPFLFHVHPPNSSHLVIHVTNFHSDTWEAHLSVSS 60

Query: 61  LDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRIS 120
           L+D+ D IGIGGSWSEF +Y V S+KSED+KL+LE +SN+DG + AK++AQKSKGMP I+
Sbjct: 61  LEDIMDIIGIGGSWSEFANYFVNSLKSEDLKLVLEPNSNSDGVSSAKLIAQKSKGMPLIT 120

Query: 121 ISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180
           I LT+L  S+A+EA++ LSL LF AFRS +  +V  QER +QL    A+EKERNE I   
Sbjct: 121 IPLTKLVDSSASEAVSNLSLSLFKAFRSTKCSLVDVQERSVQLTNMMASEKERNETI--- 177

Query: 181 PLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVR 240
           PL  +RQK QK++ S+K  +S    +NG+Q+SPDKQ A+    +KV NRV+PAHRR KVR
Sbjct: 178 PL-DRRQKFQKISDSEKAGVS----NNGAQNSPDKQKARDTGTTKVKNRVMPAHRRTKVR 232

Query: 241 GALLQDTE 248
           GALL+D++
Sbjct: 233 GALLRDSD 240

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459256|ref|XP_004147362.1| PREDICTED: uncharacterized protein LOC101217609 [Cucumis sativus] gi|449526088|ref|XP_004170046.1| PREDICTED: uncharacterized protein LOC101231777 [Cucumis sativus]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 135/252 (53%), Positives = 173/252 (68%), Gaps = 17/252 (6%)

Query: 1   MKIEGFEPIFGEP-KAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVL 59
           M+++ F PIFG+P + EW +  S SL +FLFHV +P+ SHL   VTDF SNTWE+ +S  
Sbjct: 1   MELQDFAPIFGKPTRVEWVNRGSLSLLQFLFHVYSPNPSHLRFLVTDFHSNTWESTKSAF 60

Query: 60  QLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRI 119
           QL+DMRD+IGIGG++SEF+DY+VAS+K  DV+L +EG S  DGAA  K++AQKSKGMP  
Sbjct: 61  QLEDMRDDIGIGGAFSEFVDYIVASMKFGDVRLCMEGQSGKDGAASVKLIAQKSKGMPVF 120

Query: 120 SISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQN 179
           SISLT+L  SAA EAMA +SL LF + +  +  +++EQE  LQL    + EKE+NENIQ 
Sbjct: 121 SISLTKLVDSAAAEAMATMSLGLFNSLKEKECSLMKEQEHSLQLTTMISTEKEKNENIQT 180

Query: 180 Q-PLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAK 238
           Q   Y K+QKLQ MN S               +SPDK    +   +K  NRV+P HRRAK
Sbjct: 181 QLGQYRKKQKLQNMNAS---------------NSPDKSGVHNIGLTKATNRVVPVHRRAK 225

Query: 239 VRGALLQDTEDD 250
            RGALLQD+EDD
Sbjct: 226 ARGALLQDSEDD 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797403|ref|XP_002866586.1| hypothetical protein ARALYDRAFT_496595 [Arabidopsis lyrata subsp. lyrata] gi|297312421|gb|EFH42845.1| hypothetical protein ARALYDRAFT_496595 [Arabidopsis lyrata subsp. lyrata]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/248 (48%), Positives = 156/248 (62%), Gaps = 17/248 (6%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPEHSDPGSGLLRRCLFHVYASDSYNLTVHVTDFVSGVWATILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L  +S ++G   A++V+QK+KGMPR+ + 
Sbjct: 64  DMRDTVGIGGSWSEFLDYTVASMKSDNVKLLLGDNSVSNGVKTARLVSQKAKGMPRVIVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L     +  +     A  EK++ +   NQ  
Sbjct: 124 LTKMVDSSASEAMANLSLELFRAFKSKQHL-----QGEVSSSAAATDEKDKRDATHNQ-- 176

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVRGA 242
                      +S K D+ A    N  QDSP KQ+A+    +K   RV PAHRR + RGA
Sbjct: 177 --------VERYSGKLDVMAPSTDN-RQDSPAKQSAREGYTTKPVKRV-PAHRRTRKRGA 226

Query: 243 LLQDTEDD 250
           LLQD+EDD
Sbjct: 227 LLQDSEDD 234

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79547434|ref|NP_201206.3| uncharacterized protein [Arabidopsis thaliana] gi|332010446|gb|AED97829.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/248 (47%), Positives = 157/248 (63%), Gaps = 17/248 (6%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ 
Sbjct: 64  DMRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L     +  +     A  EK++ +   NQ  
Sbjct: 124 LTKMVESSASEAMANLSLELFRAFKSKQHL-----QGEVSFSAAATDEKDKRDATYNQ-- 176

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVRGA 242
                 L++  +S K D+ A   +N  QDSP  Q+A+         RV PAHRR + RGA
Sbjct: 177 ------LER--YSRKLDVMAPS-TNNRQDSPANQSAREANTKNPVKRV-PAHRRTRKRGA 226

Query: 243 LLQDTEDD 250
           LLQD+E++
Sbjct: 227 LLQDSEEE 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754430|gb|AAO22663.1| unknown protein [Arabidopsis thaliana] gi|50253576|gb|AAT71990.1| At1g12020 [Arabidopsis thaliana]

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/248 (47%), Positives = 157/248 (63%), Gaps = 17/248 (6%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ 
Sbjct: 64  DMRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L     +  +     A  EK++ +   NQ  
Sbjct: 124 LTKMVESSASEAMANLSLELFRAFKSKQHL-----QGEVSFSAAATDEKDKRDATYNQ-- 176

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVRGA 242
                 L++  +S K D+ A   +N  QDSP  Q+A+         RV PAHRR + RGA
Sbjct: 177 ------LER--YSRKLDVMAPS-TNNRQDSPANQSAREANTKNPVKRV-PAHRRTRKRGA 226

Query: 243 LLQDTEDD 250
           LLQD+E++
Sbjct: 227 LLQDSEEE 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8777314|dbj|BAA96904.1| unnamed protein product [Arabidopsis thaliana]

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 115/248 (46%), Positives = 154/248 (62%), Gaps = 8/248 (3%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ 
Sbjct: 64  DMRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L V      +         +   +  +    
Sbjct: 124 LTKMVESSASEAMANLSLELFRAFKSKQHLQVLNTA-AIVCSYSGGKSRLYCDQDKRDAT 182

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVRGA 242
           Y++ ++     +S K D+ A   +N  QDSP  Q+A+         RV PAHRR + RGA
Sbjct: 183 YNQLER-----YSRKLDVMAPS-TNNRQDSPANQSAREANTKNPVKRV-PAHRRTRKRGA 235

Query: 243 LLQDTEDD 250
           LLQD+E++
Sbjct: 236 LLQDSEEE 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082599|emb|CBI21604.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/156 (64%), Positives = 121/156 (77%), Gaps = 6/156 (3%)

Query: 1   MKIEGFEPIFGEPKAEWAD-SRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVL 59
           M  E FE IFGE K EWA+ SR     RFLFH  A D S L I+VTDF S+TWEA RSV 
Sbjct: 1   MGFEDFEAIFGEAKPEWANESR-----RFLFHFDAIDPSRLRIRVTDFHSSTWEAVRSVE 55

Query: 60  QLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRI 119
           QL+DMRD +GIGGSWSEF+DYV+ASIKSEDVKL+LE ++ +DGAAYAK+VAQKSKGMP I
Sbjct: 56  QLEDMRDTVGIGGSWSEFVDYVIASIKSEDVKLVLEENAKSDGAAYAKLVAQKSKGMPLI 115

Query: 120 SISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQ 155
             SL +L  SAA+EAM  LSLELF ++++MQ L ++
Sbjct: 116 CFSLAKLENSAASEAMMNLSLELFKSYKNMQNLFIK 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723845|ref|NP_001237293.1| uncharacterized protein LOC100305573 [Glycine max] gi|255625951|gb|ACU13320.1| unknown [Glycine max]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/241 (46%), Positives = 149/241 (61%), Gaps = 19/241 (7%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQ 60
           M  E F+PIF +PK +W      S   F  H  APDSSHL+I VT+   + WE + S+  
Sbjct: 1   MAFEDFDPIFSKPKVKWDSESCSSSCPFFLHAYAPDSSHLVIHVTNIY-DAWETRLSLSM 59

Query: 61  LDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRIS 120
           L+D+RD +GIGGSWS+F DY + S+KS+D+KL+LE  SN+DG ++ K+VAQKSKGMP I+
Sbjct: 60  LEDIRDIVGIGGSWSDFADYFLTSLKSQDLKLVLEPDSNSDGVSHVKLVAQKSKGMPLIT 119

Query: 121 ISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEA-----AAEKERNE 175
           I  T+L  SAA E        LF AF    T    E+ER    E  A     AAEKERNE
Sbjct: 120 IPPTKLMDSAAMEVKLNFCSSLFEAFEIKSTECSLEKER----EHSARTNMLAAEKERNE 175

Query: 176 NIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHR 235
            IQ      +RQK QK++ S+       + ++G Q+SPDKQAA+   A+KV NR +PA+R
Sbjct: 176 AIQ----LEQRQKFQKISNSEN-----GVSTDGLQNSPDKQAARDTGATKVKNRKVPAYR 226

Query: 236 R 236
           R
Sbjct: 227 R 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2160786	236	AT5G64010 "AT5G64010" [Arabido	0.913	0.978	0.437	1.4e-41

TAIR|locus:2160786 AT5G64010 "AT5G64010" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 108/247 (43%), Positives = 143/247 (57%)

Query:     4 EGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDD 63
             E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLDD
Sbjct:     5 EKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLDD 64

Query:    64 MRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISL 123
             MRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ L
Sbjct:    65 MRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVPL 124

Query:   124 TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLXXXXXXXXXRNENIQNQPLY 183
             T++  S+A+EAMA LSLELF AF+S Q L  Q +                +E  +    Y
Sbjct:   125 TKMVESSASEAMANLSLELFRAFKSKQHL--QGE--------VSFSAAATDEKDKRDATY 174

Query:   184 SKRQKLQKMNFSDKTDISASILSNGSQDSPDKQAAQSPVASKVANRVIPAHRRAKVRGAL 243
             ++ ++     +S K D+ A   +N  QDSP  Q+A+         RV    R  K    L
Sbjct:   175 NQLER-----YSRKLDVMAPS-TNNRQDSPANQSAREANTKNPVKRVPAHRRTRKRGALL 228

Query:   244 LQDTEDD 250
                 E+D
Sbjct:   229 QDSEEED 235


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.128   0.355    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       244   0.00098  113 3  11 23  0.47    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  174 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.28u 0.09s 21.37t   Elapsed:  00:00:01
  Total cpu time:  21.28u 0.09s 21.37t   Elapsed:  00:00:01
  Start:  Fri May 10 08:15:32 2013   End:  Fri May 10 08:15:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090332 "stomatal closure" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PF15384	197	DUF4610: Domain of unknown function (DUF4610)	97.18
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	95.39

>PF15384 DUF4610: Domain of unknown function (DUF4610)

Probab=97.18  E-value=0.011  Score=53.05  Aligned_cols=112  Identities=18%  Similarity=0.276  Sum_probs=95.3

Q ss_pred             cceEEEEeCC-----CCCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeecCCCCC
Q 025423           26 GRFLFHVSAP-----DSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNA  100 (253)
Q Consensus        26 ~pfLFh~~a~-----d~~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~~VkL~l~~~s~s  100 (253)
                      -+|+++-+-.     +.+...|+|||--. -|...|+-++|+.+|+-.|.- +..||.--|.+.+..|.|.|-|-.+   
T Consensus        13 ~ryvCyce~~~~~~~~~g~~~i~vTDg~d-vW~t~~t~dsL~~~k~~~~L~-~~Edy~~rfR~Ac~~~~vtvtlqed---   87 (197)
T PF15384_consen   13 PRYVCYCEGEGSGDGDAGVWNIYVTDGAD-VWSTCFTPDSLAALKARFGLS-SAEDYFSRFRAACEQQAVTVTLQED---   87 (197)
T ss_pred             CcEEEEEeCCCCCCCCCCeeEEEecccHH-hhhhccCHHHHHHHHhhcccc-hHHHHHHHHHHHhhcCeeEEEEecC---
Confidence            3588888877     67889999999874 499999999999999999984 6889999999999999999999863   


Q ss_pred             CCcccceeeeeccCCCCeeEEeeccccchhHHHHHHHhhHHHHHHHHH
Q 025423          101 DGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRS  148 (253)
Q Consensus       101 ~G~~~akLVa~KaKGmP~ItI~L~~l~~saa~D~ma~~sl~Lf~afrs  148 (253)
                            +++-+-+.|-.-|++.|.++.++-+...+-.|-|.|.+....
T Consensus        88 ------~a~Ltls~g~s~L~~dL~k~p~~Ea~~~Lq~L~f~lAe~v~~  129 (197)
T PF15384_consen   88 ------RASLTLSGGPSALTFDLSKVPAPEAAPRLQALTFRLAERVCS  129 (197)
T ss_pred             ------eEEEEecCCCccceEEhhhCCCchhhHHHHHHHHHHHHHHHH
Confidence                  444455888999999999999999998888888887765533

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=95.39  E-value=0.2  Score=47.93  Aligned_cols=141  Identities=14%  Similarity=0.213  Sum_probs=85.5

Q ss_pred             cceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccc-----cceEeecCCC
Q 025423           26 GRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSE-----DVKLILEGHS   98 (253)
Q Consensus        26 ~pfLFh~~a~d~--~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~-----~VkL~l~~~s   98 (253)
                      ..++.++.-...  +|+.|.+||-|+ +|.+..|-.++....++.  ++++.+|++-+.-.|-.+     .-.+.+-.  
T Consensus        16 ~~yfL~~~W~~~~~~~F~i~lTDG~s-aW~g~vs~~ei~~~A~~~--~~~~~eYv~~l~kaL~~~~~~~~~y~f~~~~--   90 (342)
T PF06632_consen   16 SIYFLQVSWEKDLGSGFDITLTDGQS-AWSGTVSEEEIRQRAKDW--DMEVEEYVQELKKALTGQQQPSSEYSFDLTE--   90 (342)
T ss_dssp             SEEEEEEEESSSGGGEEEEEEESSSS-EEEEEEEHHHHHHHHHHT--TS-HHHHHHHHHHHHTSSSSSSSEEEEEE----
T ss_pred             ceEEEEEEeccCCCCceEEEEecCCC-ceeeecCHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCCcceEEEee--
Confidence            345666655432  589999999995 899999999999988875  688999999999999654     23444421  


Q ss_pred             CCCCcccceeeeeccCCCCeeEEee-----ccccchhH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025423           99 NADGAAYAKIVAQKSKGMPRISISL-----TRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKE  172 (253)
Q Consensus        99 ~s~G~~~akLVa~KaKGmP~ItI~L-----~~l~~saa-~D~ma~~sl~Lf~afrs~q~~~~~eqe~~s~L~~~LsaEKe  172 (253)
                      ...|....++  +..|-+.-|++-|     .....-+. -.-|-++++.....+...-.++.+|-++..+-.+.+-++-|
T Consensus        91 ~~~~~~~l~~--t~~K~~~~it~rLGsv~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE  168 (342)
T PF06632_consen   91 DRESNKSLSF--TIEKRLKDITFRLGSVKLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLE  168 (342)
T ss_dssp             ---ETTTTEE--EEEEEESSEEEEEEEEE-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCceEEE--EEEEecCCceEEEeeEECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1223333333  3333345566655     33333221 11245667777777776666776666665544444444433


Q ss_pred             h
Q 025423          173 R  173 (253)
Q Consensus       173 k  173 (253)
                      +
T Consensus       169 ~  169 (342)
T PF06632_consen  169 K  169 (342)
T ss_dssp             H
T ss_pred             H
Confidence            3

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
3w03_C	184	DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS	94.41
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	93.03
3mud_A	175	DNA repair protein XRCC4, tropomyosin alpha-1 CHA;	93.03
3q4f_C	186	DNA repair protein XRCC4; DSB repair, nuclear, rec	89.27

>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}

Probab=94.41  E-value=2  Score=37.11  Aligned_cols=131  Identities=16%  Similarity=0.223  Sum_probs=86.2

Q ss_pred             CCCccceEEEEeC-CC-CCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccc-----eEee
Q 025423           22 SDSLGRFLFHVSA-PD-SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDV-----KLIL   94 (253)
Q Consensus        22 s~~~~pfLFh~~a-~d-~~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~~V-----kL~l   94 (253)
                      |-+-.+++..+.= .| .+.+.|.+||-+ ++|.+..|-+++..+-+++|-  .-++|++-|+.+|-+++-     ++-+
T Consensus        32 s~p~~~yflk~~W~~~l~sgF~L~LTDG~-sAW~G~vSe~~I~~~A~~~~m--~~e~Yv~eL~kAl~~~~~~~~~Y~f~~  108 (184)
T 3w03_C           32 SEPSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNF  108 (184)
T ss_dssp             TCTTSCEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEE
T ss_pred             CCCCceEEEEEEeccCCCCceEEEEECCC-ceeeEEcCHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCceEEEec
Confidence            3344555555544 22 367999999999 789999999999998888654  788999999999965443     5555


Q ss_pred             cCCCCCCCcccceeeeecc-CCCCe--eEEeeccccchh-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025423           95 EGHSNADGAAYAKIVAQKS-KGMPR--ISISLTRLTGSA-ATEAMAKLSLELFTAFRSMQTLIVQEQERCLQ  162 (253)
Q Consensus        95 ~~~s~s~G~~~akLVa~Ka-KGmP~--ItI~L~~l~~sa-a~D~ma~~sl~Lf~afrs~q~~~~~eqe~~s~  162 (253)
                      .+       ...++.--|. +++-.  =+++|.++.+.+ +.--|-+++++-+..++..-.++.+|-+|..+
T Consensus       109 s~-------e~~~fs~eK~l~di~frLGSv~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~  173 (184)
T 3w03_C          109 SK-------ESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR  173 (184)
T ss_dssp             CT-------TTCEEEEEEEETTEEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc-------cceEEEeeeccCceEEEEeeeeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43       2355544444 33321  147788888755 33336667777666666555555555555443

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=93.03  E-value=0.79  Score=39.84  Aligned_cols=62  Identities=16%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             ccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccccc
Q 025423           25 LGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSED   89 (253)
Q Consensus        25 ~~pfLFh~~a~d~--~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~~   89 (253)
                      -..++.|+...+.  .++.|++||-+ +.|.++++-+++...-+.  .+++..+|++-+...|..++
T Consensus        15 ~~~~~l~~~w~~~~~~~f~l~~TdG~-~~w~g~v~~~~i~~rAk~--~~~~~eey~~~l~~aL~~~~   78 (213)
T 1ik9_A           15 SITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADD--MAMEKGKYVGELRKALLSGA   78 (213)
T ss_dssp             EEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHH--TTCCHHHHHHHHHHHHCC--
T ss_pred             CCeEEEEEEEcCCCCCceEEEEecCC-CceEEEecHHHHHHHHHh--cCCCHHHHHHHHHHHHhCCC
Confidence            3567778877653  78999999985 789999999999854444  57899999999999998883

>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*

Probab=93.03  E-value=1.2  Score=38.40  Aligned_cols=122  Identities=17%  Similarity=0.283  Sum_probs=86.9

Q ss_pred             CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccc-----ccceEeecCCCCCCCcccceeeeec
Q 025423           38 SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKS-----EDVKLILEGHSNADGAAYAKIVAQK  112 (253)
Q Consensus        38 ~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS-----~~VkL~l~~~s~s~G~~~akLVa~K  112 (253)
                      +.+.|..||-| ++|....|-+++..+-|++|-  --..|++-|+-.|-+     ++-++.|.+.       .-++-=.|
T Consensus        33 ~gf~i~ltDG~-saW~g~Vs~~~i~~eA~~~~m--e~e~Yv~el~kAl~~~~~~~~~~~f~~s~e-------~~~~syek  102 (175)
T 3mud_A           33 SGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSKE-------SCYFFFEK  102 (175)
T ss_dssp             GEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHTTCCCTTCCEEEEECTT-------TCEEEEEE
T ss_pred             cceEEEEeCCc-ceeeeeeCHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEecChh-------HHHHHHHH
Confidence            56899999999 579999999999999998876  467899999999933     4788888654       22232233


Q ss_pred             cCCCCeeEEee-----ccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 025423          113 SKGMPRISISL-----TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ  180 (253)
Q Consensus       113 aKGmP~ItI~L-----~~l~~saa~D~ma~~sl~Lf~afrs~q~~~~~eqe~~s~L~~~LsaEKeknE~mq~q  180 (253)
                      .  +.-+++.|     ..+...|  ++|-.|.-   -+.|    .+.+=|..+.+|+..|..||+++..||..
T Consensus       103 ~--lk~vsfrLGs~~Lk~a~~pa--E~ireli~---~Aer----tV~kLqkeiD~LEDeL~~eKek~k~i~~e  164 (175)
T 3mud_A          103 N--LKDVSFRLGSFNLEKVENPA--EVIRELIC---YCLD----TTAKNEKSIDDLEEKVAHAKEENLNMHQM  164 (175)
T ss_dssp             E--CSSCEEEEEEEECEECSCHH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHhcccccccCCChH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  34455555     7777755  34443321   1222    23344678899999999999999998876

>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}

Probab=89.27  E-value=6.3  Score=34.30  Aligned_cols=128  Identities=15%  Similarity=0.228  Sum_probs=90.6

Q ss_pred             ccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecCC
Q 025423           25 LGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEGH   97 (253)
Q Consensus        25 ~~pfLFh~~a~d~--~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~sl-----sS~~VkL~l~~~   97 (253)
                      ..+.+..+.--..  +.+.|..||-| ++|.+..|-+++..+-|++|-  --..|++-|+-+|     ..++-++.|.++
T Consensus        44 ~~~yfLqvsW~~~lgsGF~i~LTDGq-SaW~G~VS~~~Is~eAd~m~M--e~e~YV~eL~KALv~~~~~~~~y~F~~S~e  120 (186)
T 3q4f_C           44 SITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSKE  120 (186)
T ss_dssp             EEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEECTT
T ss_pred             CccEEEEEEeccCCCcceEEEEeCCc-ceeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEeccc
Confidence            3444444444433  56999999999 579999999999999999876  4678999999999     566888888753


Q ss_pred             CCCCCcccceeeeecc-CCC--CeeEEeeccccchhH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025423           98 SNADGAAYAKIVAQKS-KGM--PRISISLTRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQ  162 (253)
Q Consensus        98 s~s~G~~~akLVa~Ka-KGm--P~ItI~L~~l~~saa-~D~ma~~sl~Lf~afrs~q~~~~~eqe~~s~  162 (253)
                             +..+.=.|. ||+  .+=++.|.++..-+. .-=|-+.||.=-..++..-+|+.+|-+|.++
T Consensus       121 -------~~~Fs~eK~LkdvsF~LGSv~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~  182 (186)
T 3q4f_C          121 -------SCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR  182 (186)
T ss_dssp             -------TCEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------eeEEEEEEEecCcEEEEeeEEeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   455554444 443  334666777776443 4445566777777777777777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00