Citrus Sinensis ID: 025456

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEVRAFI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEcccccccccccccccccEEEEEEcccccccHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccHEHcccccEcccccccccccEEEEccccccccccccccccccccccccHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccHHcccEEEEEEccccccHHHHHHcccccEEEEEEcccccccccccEEEcHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccEEEccccEEEc
Coil and Loop (DISEMBL)
matplilrncptlctlnsnqpplrtltltkhfsvsttktwshsinstkmgkseitEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKakttlskdnpslqiVKADVTEGSAKLSeaigddseaVVCAtgfqpgwdlfapwkvdnfgtvNLVEACRKRGVNRFILISSILVngaamgqilnPAYIFLNVFGLTLIAKLQAEQYIRKSginytiirpgglrnepptgniimETEVRAFI
Flexible Loop (DISEMBL)
matplilrncptlctlnsnqpplRTLTLTKHFSvsttktwshsinstkmgkSEITEEAeenvsvkqkkifvagatgssgkRIVEQLLAKGFAVKAGVRDLDKakttlskdnpslqivkADVTEGSAKLSeaigddseaVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGinytiirpgglrnepptgniimetevrafi
Low Complexity Region (SEG)
MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEVRAFI
Disordered region (IsUnstruct)
****LILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTW***************************KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL*******************************IGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL*******************
Disordered Region (DISOPRED)
*********C***********************************************************FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA****SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIME*******
Disordered Region (DISEMBL)
MATPLILRNCPTLCTLNSNQPPLRTLTLTKHF*******************************VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEVRAFI
Disordered Region (DISPRO)
*ATPLILRNCPTLCTLNSNQPPLRTLTLTK**********************************KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEVRAFI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEVRAFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q8H124	280	Uncharacterized protein A	yes	no	0.896	0.807	0.655	1e-88
Q8SKU2	534	Protein TIC 62, chloropla	N/A	no	0.757	0.357	0.366	2e-21
Q8H0U5	641	Protein TIC 62, chloropla	no	no	0.694	0.273	0.355	8e-20
Q3ZBE9	356	Sterol-4-alpha-carboxylat	yes	no	0.428	0.303	0.35	3e-08
Q04304	227	UPF0659 protein YMR090W O	yes	no	0.626	0.696	0.311	4e-08
O07609	214	Uncharacterized sugar epi	yes	no	0.670	0.789	0.315	5e-08
P51238	319	Uncharacterized protein y	N/A	no	0.547	0.432	0.308	8e-08
Q9R1J0	362	Sterol-4-alpha-carboxylat	yes	no	0.484	0.337	0.313	8e-07
O80934	325	Uncharacterized protein A	no	no	0.666	0.516	0.283	2e-06
O78472	314	Uncharacterized protein y	yes	no	0.559	0.449	0.284	3e-06

>sp|Q8H124|Y2446_ARATH Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1

 Score =  326 bits (835), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/247 (65%), Positives = 197/247 (79%), Gaps = 21/247 (8%)

Query: 1   MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEE 60
           MAT L+LR+   +    S+       T  K F          S  S KM K E      E
Sbjct: 1   MATSLLLRHSSAVFFSQSS-----FFTKNKSF---------RSFTSIKMEKGE-----AE 41

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKAD 120
           N +VK KK+FVAGATG +GKRIVEQLL++GFAVKAGVRD++KAKT+  KD+PSLQIV+AD
Sbjct: 42  N-AVKTKKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSF-KDDPSLQIVRAD 99

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           VTEG  KL+E IGDDS+AV+CATGF+PG+D+F PWKVDNFGTVNLV+ACRK+GV +F+L+
Sbjct: 100 VTEGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLV 159

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
           SSILVNGAAMGQILNPAY+FLN+FGLTL+AKLQAE+YI+KSGINYTI+RPGGL+N+PPTG
Sbjct: 160 SSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTG 219

Query: 241 NIIMETE 247
           N++ME E
Sbjct: 220 NVVMEPE 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SKU2|TIC62_PEA Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 120/229 (52%), Gaps = 38/229 (16%)

Query: 45  NSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK 104
           +ST  G  E T+  ++N+      +FVAGATG  G R V +L+  GF V+AGVR+  KA 
Sbjct: 73  SSTAEGIPEKTDSKDDNL------VFVAGATGKVGSRTVRELIKLGFKVRAGVRNAQKAG 126

Query: 105 T------TLSKDNPS--------LQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG-- 148
                   L  D  S        L+IV+ D+ E + ++  A+G+ S  V+CA G      
Sbjct: 127 ALVQSVKQLKLDGASGGGEAVEKLEIVECDL-EKADQIGSALGNAS-TVICAIGASEKEI 184

Query: 149 WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL 208
           +D+  P ++D   T NLV+A     VN FIL++S+  N   +     PA I LN+F   L
Sbjct: 185 FDITGPCRIDYRATKNLVDAATVAKVNHFILVTSLGTNKFGL-----PAAI-LNLFWGVL 238

Query: 209 IAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG------NIIMETEVRAF 251
           I K +AE+ +  SGI YTI+RPGG+  E PT       N+ + TE   F
Sbjct: 239 IWKRKAEEALLASGIPYTIVRPGGM--ERPTDAYKETHNVTLSTEDTLF 285

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids.

Pisum sativum (taxid: 3888)

>sp|Q8H0U5|TIC62_ARATH Protein TIC 62, chloroplastic OS=Arabidopsis thaliana GN=TIC62 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 106/200 (53%), Gaps = 25/200 (12%)

Query: 52  SEITEEAEENVSVKQKK-IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA------- 103
           S +TE +  N++ K++  +FVAGATG  G R V +LL  GF V+AGVR   +A       
Sbjct: 66  SVVTEASPTNLNSKEEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAGSLVQSV 125

Query: 104 -----KTTLSKDNP--SLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGW--DLFAP 154
                + T     P   L+IV+ D+ E    +  A+G+ S  ++C  G       D+  P
Sbjct: 126 KEMKLQNTDEGTQPVEKLEIVECDL-EKKDSIQPALGNAS-VIICCIGASEKEISDITGP 183

Query: 155 WKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA 214
           +++D   T NLV+A     VN FIL++S+  N         PA I LN+F   L  K +A
Sbjct: 184 YRIDYLATKNLVDAATSAKVNNFILVTSLGTNKFGF-----PAAI-LNLFWGVLCWKRKA 237

Query: 215 EQYIRKSGINYTIIRPGGLR 234
           E+ + +SG+NY I+RPGG+ 
Sbjct: 238 EEALIESGLNYAIVRPGGME 257

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Acts as a membrane anchor of LFNR1 and LFNR2. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ZBE9|NSDHL_BOVIN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Bos taurus GN=NSDHL PE=2 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 12/120 (10%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K K+  V G  G  G+ +VEQLLA+G+AV   V D+ +       DNP +Q    D+   
Sbjct: 19  KAKRCTVIGGCGFLGQHMVEQLLARGYAVN--VFDIRQG-----FDNPRVQFFLGDLCS- 70

Query: 125 SAKLSEAIGDDSEAVVCAT--GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
              L  A+   S    CA+   F    +LF  ++V+  GT N++E C++ GV + IL SS
Sbjct: 71  QQDLYPALKGVSTVFHCASPPPFNNNKELF--YRVNYIGTKNVIETCKEAGVQKLILTSS 128

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

>sp|Q04304|YMY0_YEAST UPF0659 protein YMR090W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR090W PE=1 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 22/180 (12%)

Query: 68  KIFVAGATGSSGKRIVEQLLA-KGFAVK-AGVRDLDKA---KTTLSKDNPSLQIVKADVT 122
           K+ V GA+G  G+ ++ QL A   F+   A VR  D+    K  +  D     I  A V+
Sbjct: 5   KVAVVGASGKVGRLLINQLKANDSFSTPLAIVRTQDQVNYFKNEVGVDASLTDIENASVS 64

Query: 123 EGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
           E    +++AI    +AVV + G   G  +   + VD  G + +VEAC K G+ RF+++S+
Sbjct: 65  E----ITDAI-KAYDAVVFSAG-AGGKGMERIFTVDLDGCIKVVEACEKAGIKRFVVVSA 118

Query: 183 ILVNGAAMGQILNPAYIFLNVFGL--TLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
           +                + N+ GL    IAK  A++ +R S ++YTI++PG L     TG
Sbjct: 119 LKAEDRDF---------WYNIKGLREYYIAKRSADREVRNSNLDYTILQPGSLELNKGTG 169

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O07609|YHFK_BACSU Uncharacterized sugar epimerase YhfK OS=Bacillus subtilis (strain 168) GN=yhfK PE=2 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 21/190 (11%)

Query: 68  KIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           K+F+ GA G  G+R+V         +++A VR   K +   S +    + V A++ EGS 
Sbjct: 2   KVFLIGANGQIGQRLVSLFQDNPDHSIRAMVR---KEEQKASLEAAGAEAVLANL-EGSP 57

Query: 127 KLSEAIGDDSEAVV--CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
           +   A     +A++    +G   G+D      VD  G    +EA    G+ RFI++S++ 
Sbjct: 58  EEIAAAAKGCDAIIFTAGSGGSTGYD--KTLLVDLDGAAKAIEAAAIAGIKRFIMVSALQ 115

Query: 185 V-NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNII 243
             N     + L P Y+          AK  A++ +  SG+ YTIIRPGGLRNEP TG + 
Sbjct: 116 AHNRENWNEALKPYYV----------AKHYADKILEASGLTYTIIRPGGLRNEPGTGTVS 165

Query: 244 METEV-RAFI 252
              ++ R FI
Sbjct: 166 AAKDLERGFI 175

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P51238|YCF39_PORPU Uncharacterized protein ycf39 OS=Porphyra purpurea GN=ycf39 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 34/172 (19%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V GATG+ G++IV + L +G+ VK  VR+L K+          L+   A++  G  KL
Sbjct: 3   LLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSAF--------LKEWGAELVYGDLKL 54

Query: 129 SEAIGDD---SEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
            E+I        AV+ A+  +P  D +   ++D  G + L+EA +   V RFI  S    
Sbjct: 55  PESILQSFCGVTAVIDASTSRPS-DPYNTEQIDLDGKIALIEAAKAAKVQRFIFFS---- 109

Query: 186 NGAAMGQILN----PAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
                  ILN    P    +N+       K Q   Y++KS I+YT+   GG 
Sbjct: 110 -------ILNADQYPKVPLMNL-------KSQVVNYLQKSSISYTVFSLGGF 147

Porphyra purpurea (taxid: 2787)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=2 SV=1

 Score = 54.3 bits (129), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 12/134 (8%)

Query: 51  KSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD 110
           + ++T     N   K KK  V G +G  G+ +VEQLL +G+ V   V D+ +       D
Sbjct: 11  RGQVTGTHLTNDISKAKKCTVIGGSGFLGQHMVEQLLERGYTVN--VFDIHQG-----FD 63

Query: 111 NPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT--GFQPGWDLFAPWKVDNFGTVNLVEA 168
           NP +Q    D+      L  A+   S    CA+   +    +LF  ++V+  GT  ++E 
Sbjct: 64  NPRVQFFIGDLC-NQQDLYPALKGVSTVFHCASPPPYSNNKELF--YRVNFIGTKTVIET 120

Query: 169 CRKRGVNRFILISS 182
           CR+ GV + IL SS
Sbjct: 121 CREAGVQKLILTSS 134

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

>sp|O80934|Y2766_ARATH Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 40/208 (19%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V GA G +G+ + ++L  +     A  R L + K +  K N   ++   D+ + +A +
Sbjct: 79  VLVTGAGGRTGQIVYKKLKERSEQFVA--RGLVRTKESKEKINGEDEVFIGDIRD-TASI 135

Query: 129 SEAIGDDSEAVVCATG----FQPGWD---------LF----APWKVDNFGTVNLVEACRK 171
           + A+ +  +A+V  T      +PG+D          F     P +VD  G  N ++A + 
Sbjct: 136 APAV-EGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKA 194

Query: 172 RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
            GV + +L+ S+   G  +   LN +    N+    L+ K +AEQY+  SGI YTIIR G
Sbjct: 195 AGVKQIVLVGSM--GGTNINHPLN-SIGNANI----LVWKRKAEQYLADSGIPYTIIRAG 247

Query: 232 GLRNEPPTGNI----------IMETEVR 249
           GL+++   G I          ++ETE R
Sbjct: 248 GLQDK--DGGIRELLVGKDDELLETETR 273

Arabidopsis thaliana (taxid: 3702)

>sp|O78472|YCF39_GUITH Uncharacterized protein ycf39 OS=Guillardia theta GN=ycf39 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 28/169 (16%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V GATG+ G++IV + L +G+ V   VR+L KA          L+   A++  G   L
Sbjct: 3   LLVIGATGTLGRQIVRRALDEGYEVSCLVRNLRKAYF--------LKEWGAELLYGDLSL 54

Query: 129 SEAIGDDSE---AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
            E +  +     A++ A+  +P  D +   K+D  G + LVEA +  G+ RF+  S    
Sbjct: 55  PETLPTNLTKITAIIDASTARPS-DPYKAEKIDLEGKIALVEAAKVAGIKRFVFFS---- 109

Query: 186 NGAAMGQILNPAYIFLNVFGLTLI-AKLQAEQYIRKSGINYTIIRPGGL 233
                  +LN      N   L L+  K + E+Y++ S + YT  +  G 
Sbjct: 110 -------VLNAQ----NYRHLPLVNLKCRMEEYLQTSELEYTTFQLSGF 147

Guillardia theta (taxid: 55529)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
225463460	296	PREDICTED: uncharacterized protein At2g3	0.944	0.804	0.760	3e-99
297740671	335	unnamed protein product [Vitis vinifera]	0.944	0.710	0.760	6e-99
358248271	290	uncharacterized protein LOC100812074 [Gl	0.888	0.772	0.784	5e-98
357478309	292	hypothetical protein MTR_4g115730 [Medic	0.932	0.804	0.744	8e-96
356512181	292	PREDICTED: uncharacterized protein At2g3	0.896	0.773	0.770	2e-95
224114353	254	predicted protein [Populus trichocarpa]	0.777	0.771	0.852	1e-93
147811195	237	hypothetical protein VITISV_030015 [Viti	0.710	0.755	0.893	1e-88
297823235	285	At2g34460/T31E10.20 [Arabidopsis lyrata	0.801	0.708	0.743	3e-87
449433642	308	PREDICTED: uncharacterized protein At2g3	0.805	0.659	0.770	6e-87
30686068	280	NAD(P)-binding Rossmann-fold-containing	0.896	0.807	0.655	7e-87

>gi|225463460|ref|XP_002276135.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Vitis vinifera]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 191/251 (76%), Positives = 210/251 (83%), Gaps = 13/251 (5%)

Query: 1   MATPLILRNCPTLCTLNSN----QPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITE 56
           MA+PL+L    TL TL+++    +PPL  +     FS+   +  SHS+ ST+M  SEITE
Sbjct: 1   MASPLLLFRNTTLSTLHNHYRHHRPPLPAVL----FSIKRRR--SHSLYSTQMEGSEITE 54

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI 116
           E E  V+VK K IFVAGATG++GKRIVEQLLAKGFAVKAGVRDLDKAKTT    NPSLQI
Sbjct: 55  EVE--VTVK-KTIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDLDKAKTTFPGGNPSLQI 111

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNR 176
           VKADVTEGS KL+EAIGDDS+AV+CATGFQ  WDL APWKVDNFGTVNLVEACRK GVNR
Sbjct: 112 VKADVTEGSVKLAEAIGDDSDAVICATGFQRSWDLLAPWKVDNFGTVNLVEACRKLGVNR 171

Query: 177 FILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNE 236
           FILISSILVNGAAMGQILNPAYIFLN FGL LIAKLQAEQYIRKSGINYTIIRPGGLRN+
Sbjct: 172 FILISSILVNGAAMGQILNPAYIFLNAFGLILIAKLQAEQYIRKSGINYTIIRPGGLRND 231

Query: 237 PPTGNIIMETE 247
           PPTGNI+ME E
Sbjct: 232 PPTGNIVMEPE 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740671|emb|CBI30853.3| unnamed protein product [Vitis vinifera]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 191/251 (76%), Positives = 210/251 (83%), Gaps = 13/251 (5%)

Query: 1   MATPLILRNCPTLCTLNSN----QPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITE 56
           MA+PL+L    TL TL+++    +PPL  +     FS+   +  SHS+ ST+M  SEITE
Sbjct: 40  MASPLLLFRNTTLSTLHNHYRHHRPPLPAVL----FSIKRRR--SHSLYSTQMEGSEITE 93

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI 116
           E E  V+VK K IFVAGATG++GKRIVEQLLAKGFAVKAGVRDLDKAKTT    NPSLQI
Sbjct: 94  EVE--VTVK-KTIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDLDKAKTTFPGGNPSLQI 150

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNR 176
           VKADVTEGS KL+EAIGDDS+AV+CATGFQ  WDL APWKVDNFGTVNLVEACRK GVNR
Sbjct: 151 VKADVTEGSVKLAEAIGDDSDAVICATGFQRSWDLLAPWKVDNFGTVNLVEACRKLGVNR 210

Query: 177 FILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNE 236
           FILISSILVNGAAMGQILNPAYIFLN FGL LIAKLQAEQYIRKSGINYTIIRPGGLRN+
Sbjct: 211 FILISSILVNGAAMGQILNPAYIFLNAFGLILIAKLQAEQYIRKSGINYTIIRPGGLRND 270

Query: 237 PPTGNIIMETE 247
           PPTGNI+ME E
Sbjct: 271 PPTGNIVMEPE 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248271|ref|NP_001239852.1| uncharacterized protein LOC100812074 [Glycine max] gi|255645253|gb|ACU23124.1| unknown [Glycine max]

 Score =  362 bits (930), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 178/227 (78%), Positives = 196/227 (86%), Gaps = 3/227 (1%)

Query: 21  PPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGK 80
           P      L KHF+  ++      +N  KM  SEI+E+  E++  K KK+FVAGATGS+GK
Sbjct: 13  PTFHQRHLRKHFTAPSSSL--RLLNLAKMEGSEISEQVGEDLGAK-KKVFVAGATGSTGK 69

Query: 81  RIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV 140
           RIVEQLLAKGFAVKAGVRD+DKAKTTLS  NPSLQIVKADVTEGS KL+EAIGDDSEAVV
Sbjct: 70  RIVEQLLAKGFAVKAGVRDVDKAKTTLSSANPSLQIVKADVTEGSDKLAEAIGDDSEAVV 129

Query: 141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF 200
           CATGF+PGWDL APWKVDNFGTVNLVEACRKR VNRFILISSILVNGAAMGQ+ NPAYIF
Sbjct: 130 CATGFRPGWDLLAPWKVDNFGTVNLVEACRKRNVNRFILISSILVNGAAMGQLFNPAYIF 189

Query: 201 LNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETE 247
           LNVFGLTL+AKLQAE+YIRKSGINYTIIRPGGLRN+PPTGNI+ME E
Sbjct: 190 LNVFGLTLVAKLQAEKYIRKSGINYTIIRPGGLRNDPPTGNIVMEPE 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478309|ref|XP_003609440.1| hypothetical protein MTR_4g115730 [Medicago truncatula] gi|355510495|gb|AES91637.1| hypothetical protein MTR_4g115730 [Medicago truncatula] gi|388494964|gb|AFK35548.1| unknown [Medicago truncatula]

 Score =  355 bits (912), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 186/250 (74%), Positives = 211/250 (84%), Gaps = 15/250 (6%)

Query: 1   MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSV-STTKTWSHSI-NSTKMGKSEITEEA 58
           MA PLI RN PT  T  S+         T HF+  S+ +T S +I N  KM  SEIT++A
Sbjct: 1   MAFPLIARN-PTFHTFPSH---------THHFTAPSSFRTKSLTIINFAKMEGSEITQQA 50

Query: 59  -EENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIV 117
            ++++S+K KK+FVAGATGS+GKRIVEQLLAKGFAVKAGVRDLDKAKT+LS  NPSLQ V
Sbjct: 51  VDDDLSLK-KKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDLDKAKTSLSA-NPSLQFV 108

Query: 118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRF 177
           K DVTEGS KL+EAIGDD+EAVVCATGF+PGWDL APWKVDNFGTVNLVEACRK  VNRF
Sbjct: 109 KVDVTEGSDKLAEAIGDDTEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKVNVNRF 168

Query: 178 ILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEP 237
           ILISSILVNGAAMGQ+LNPAYIFLNVFGLTL+AKLQAE +IRKSGINYTIIRPGGL+N+P
Sbjct: 169 ILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAENHIRKSGINYTIIRPGGLKNDP 228

Query: 238 PTGNIIMETE 247
           PTGN++ME E
Sbjct: 229 PTGNVVMEPE 238

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512181|ref|XP_003524799.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Glycine max]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 175/227 (77%), Positives = 195/227 (85%), Gaps = 1/227 (0%)

Query: 21  PPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGK 80
           P      L +HF+  ++ +    +N  KM  SEI+E+        +KK+FVAGATGS+GK
Sbjct: 13  PTFHQRHLKQHFTAPSSSS-LRLLNLAKMEGSEISEQVVGEDLGAKKKVFVAGATGSTGK 71

Query: 81  RIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV 140
           RIVEQLLAKGFAVKAGVRD+DKAKTTLS  NPSLQIVKADVTEGS KL+EAIGDDSEAVV
Sbjct: 72  RIVEQLLAKGFAVKAGVRDIDKAKTTLSSANPSLQIVKADVTEGSDKLAEAIGDDSEAVV 131

Query: 141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF 200
           CATGF+PGWDL APWKVDNFGTVNLVEACRKR VNRFILISSILVNGAAMGQ+LNPAYIF
Sbjct: 132 CATGFRPGWDLLAPWKVDNFGTVNLVEACRKRNVNRFILISSILVNGAAMGQLLNPAYIF 191

Query: 201 LNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETE 247
           LNVFGLTL+AKLQAE+YIRKSGINYTIIRPGGLRN+PPTGN++ME E
Sbjct: 192 LNVFGLTLVAKLQAEKYIRKSGINYTIIRPGGLRNDPPTGNVVMEPE 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114353|ref|XP_002316736.1| predicted protein [Populus trichocarpa] gi|222859801|gb|EEE97348.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/196 (85%), Positives = 183/196 (93%)

Query: 52  SEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN 111
           +EITEEA+ENV+ K+KKIFVAGATGS+GKRIVEQLLAKGF VKAGVRDLDKAKT LS+ N
Sbjct: 5   NEITEEAKENVNQKKKKIFVAGATGSTGKRIVEQLLAKGFEVKAGVRDLDKAKTILSEHN 64

Query: 112 PSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK 171
           PSLQIV ADVT+GS KL +AIGDDSEAV+CATGF+PGW+LFAPWKVDN GTVNLVEACRK
Sbjct: 65  PSLQIVTADVTKGSDKLVQAIGDDSEAVICATGFRPGWNLFAPWKVDNLGTVNLVEACRK 124

Query: 172 RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
            GV RFILISSILVNGAAMGQILNPAYIFLNVFGLTL+AKLQAE YIRKSGINYTI+RP 
Sbjct: 125 LGVKRFILISSILVNGAAMGQILNPAYIFLNVFGLTLVAKLQAENYIRKSGINYTIVRPA 184

Query: 232 GLRNEPPTGNIIMETE 247
           GLRNEPP+GN++ME E
Sbjct: 185 GLRNEPPSGNLVMEPE 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811195|emb|CAN70158.1| hypothetical protein VITISV_030015 [Vitis vinifera]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/179 (89%), Positives = 167/179 (93%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           IFVAGATG++GKRIVEQLLAKGFAVKAGVRDLDKAKTT    NPSLQIVKADVTEGS KL
Sbjct: 5   IFVAGATGNTGKRIVEQLLAKGFAVKAGVRDLDKAKTTFPGGNPSLQIVKADVTEGSVKL 64

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
           +EAIGDDS+AV+CATGFQ  WDL APWKVDNFGTVNLVEACRK GVNRFILISSILVNGA
Sbjct: 65  AEAIGDDSDAVICATGFQRSWDLLAPWKVDNFGTVNLVEACRKLGVNRFILISSILVNGA 124

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETE 247
           AMGQILNPAYIFLN FGL LIAKLQAEQYIRKSGINYTIIRPGGLRN+PPTGNI+ME E
Sbjct: 125 AMGQILNPAYIFLNAFGLILIAKLQAEQYIRKSGINYTIIRPGGLRNDPPTGNIVMEPE 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823235|ref|XP_002879500.1| At2g34460/T31E10.20 [Arabidopsis lyrata subsp. lyrata] gi|297325339|gb|EFH55759.1| At2g34460/T31E10.20 [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 187/207 (90%), Gaps = 5/207 (2%)

Query: 42  HSINSTKMGKSEITEEAEENVSVKQ-KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL 100
            S +S KM + E +EE +   +VK  KK+FVAGATG +GKRIVEQLL++GFAVKAGVRD+
Sbjct: 29  RSFSSIKMERGEASEEKD---AVKTTKKVFVAGATGKTGKRIVEQLLSRGFAVKAGVRDV 85

Query: 101 DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNF 160
           +KAKT+  KD+PSLQIV+ADVTEG  KL+EAIGDDS+AV+CATGF+PG+D+F PWKVDNF
Sbjct: 86  EKAKTSF-KDDPSLQIVRADVTEGPDKLAEAIGDDSQAVICATGFRPGFDIFTPWKVDNF 144

Query: 161 GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK 220
           GTVNLV+ACRK+GV +F+LISSILVNGAAMGQILNPAYIFLN+FGLTL+AKLQAE+YIR+
Sbjct: 145 GTVNLVDACRKQGVEKFVLISSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRR 204

Query: 221 SGINYTIIRPGGLRNEPPTGNIIMETE 247
           SGINYTI+RPGGL+N+PPTGN++ME E
Sbjct: 205 SGINYTIVRPGGLKNDPPTGNVVMEPE 231

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433642|ref|XP_004134606.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Cucumis sativus] gi|449505910|ref|XP_004162602.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Cucumis sativus]

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 161/209 (77%), Positives = 183/209 (87%), Gaps = 6/209 (2%)

Query: 44  INSTKMGKSEITEE-----AEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR 98
           +NS KM  +EITEE     + EN++VK +KIFVAGA+GS+GK+IVEQLLA+GF VKAGVR
Sbjct: 47  LNSNKMEGNEITEETAQTQSGENLNVK-RKIFVAGASGSTGKKIVEQLLARGFEVKAGVR 105

Query: 99  DLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVD 158
           D+ KAKTTL   NP+LQIVKADVTEGSAKL+EAIG DSEAV+CATGF+ GWDLFAPWKVD
Sbjct: 106 DVSKAKTTLFPANPALQIVKADVTEGSAKLAEAIGSDSEAVICATGFRRGWDLFAPWKVD 165

Query: 159 NFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI 218
           N GTVNLVEACR  G+NRFILISSILVNGAAMGQILNPAYI LN  GL LIAKLQAE++I
Sbjct: 166 NLGTVNLVEACRDLGINRFILISSILVNGAAMGQILNPAYIILNALGLVLIAKLQAEKHI 225

Query: 219 RKSGINYTIIRPGGLRNEPPTGNIIMETE 247
           RKSGI+YTIIRPGGL+NEPPTGN++M  E
Sbjct: 226 RKSGIDYTIIRPGGLKNEPPTGNLVMAPE 254

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686068|ref|NP_565789.2| NAD(P)-binding Rossmann-fold-containing protein [Arabidopsis thaliana] gi|75151867|sp|Q8H124.1|Y2446_ARATH RecName: Full=Uncharacterized protein At2g34460, chloroplastic; Flags: Precursor gi|24030209|gb|AAN41284.1| unknown protein [Arabidopsis thaliana] gi|330253883|gb|AEC08977.1| NAD(P)-binding Rossmann-fold-containing protein [Arabidopsis thaliana]

 Score =  326 bits (835), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 162/247 (65%), Positives = 197/247 (79%), Gaps = 21/247 (8%)

Query: 1   MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEE 60
           MAT L+LR+   +    S+       T  K F          S  S KM K E      E
Sbjct: 1   MATSLLLRHSSAVFFSQSS-----FFTKNKSF---------RSFTSIKMEKGE-----AE 41

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKAD 120
           N +VK KK+FVAGATG +GKRIVEQLL++GFAVKAGVRD++KAKT+  KD+PSLQIV+AD
Sbjct: 42  N-AVKTKKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSF-KDDPSLQIVRAD 99

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           VTEG  KL+E IGDDS+AV+CATGF+PG+D+F PWKVDNFGTVNLV+ACRK+GV +F+L+
Sbjct: 100 VTEGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLV 159

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
           SSILVNGAAMGQILNPAY+FLN+FGLTL+AKLQAE+YI+KSGINYTI+RPGGL+N+PPTG
Sbjct: 160 SSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTG 219

Query: 241 NIIMETE 247
           N++ME E
Sbjct: 220 NVVMEPE 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2040854	280	AT2G34460 [Arabidopsis thalian	0.829	0.746	0.721	1.6e-79
TAIR|locus:2087901	641	Tic62 "translocon at the inner	0.793	0.312	0.343	1.3e-20
UNIPROTKB|Q71X34	209	LMOf2365_2365 "Putative unchar	0.646	0.779	0.305	2.7e-13
SGD|S000004696	227	YMR090W "Putative protein of u	0.634	0.704	0.297	1.2e-10
TAIR|locus:2180019	417	PCB2 "PALE-GREEN AND CHLOROPHY	0.690	0.417	0.308	2.2e-08
TAIR|locus:2015651	598	HCF173 "high chlorophyll fluor	0.373	0.157	0.356	3e-08
UNIPROTKB|K7GMD9	215	NSDHL "Uncharacterized protein	0.5	0.586	0.316	9.1e-08
UNIPROTKB|F1S2D0	361	NSDHL "Uncharacterized protein	0.5	0.349	0.316	5.8e-07
ASPGD|ASPL0000074771	309	AN4608 [Emericella nidulans (t	0.587	0.478	0.304	7.1e-07
UNIPROTKB|Q3ZBE9	356	NSDHL "Sterol-4-alpha-carboxyl	0.440	0.311	0.349	7.5e-07

TAIR|locus:2040854 AT2G34460 [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 158/219 (72%), Positives = 190/219 (86%)

Query:    32 FSVST--TKTWS-HSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLA 88
             FS S+  TK  S  S  S KM K E      EN +VK KK+FVAGATG +GKRIVEQLL+
Sbjct:    15 FSQSSFFTKNKSFRSFTSIKMEKGEA-----EN-AVKTKKVFVAGATGQTGKRIVEQLLS 68

Query:    89 KGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG 148
             +GFAVKAGVRD++KAKT+  KD+PSLQIV+ADVTEG  KL+E IGDDS+AV+CATGF+PG
Sbjct:    69 RGFAVKAGVRDVEKAKTSF-KDDPSLQIVRADVTEGPDKLAEVIGDDSQAVICATGFRPG 127

Query:   149 WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL 208
             +D+F PWKVDNFGTVNLV+ACRK+GV +F+L+SSILVNGAAMGQILNPAY+FLN+FGLTL
Sbjct:   128 FDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTL 187

Query:   209 IAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETE 247
             +AKLQAE+YI+KSGINYTI+RPGGL+N+PPTGN++ME E
Sbjct:   188 VAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPE 226

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2087901 Tic62 "translocon at the inner envelope membrane of chloroplasts 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 79/230 (34%), Positives = 124/230 (53%)

Query:    30 KHFSVS-TTKTWSHSINSTK--MGKSEITEEAEENVSVKQKK-IFVAGATGSSGKRIVEQ 85
             K+ SVS  ++++  S+ ++      S +TE +  N++ K++  +FVAGATG  G R V +
Sbjct:    41 KNHSVSGKSRSFDLSLRASGPIRASSVVTEASPTNLNSKEEDLVFVAGATGKVGSRTVRE 100

Query:    86 LLAKGFAVKAGVRDLDKAKTTLS--KD----------NP--SLQIVKADVTEGSAKLSEA 131
             LL  GF V+AGVR   +A + +   K+           P   L+IV+ D+ E    +  A
Sbjct:   101 LLKLGFRVRAGVRSAQRAGSLVQSVKEMKLQNTDEGTQPVEKLEIVECDL-EKKDSIQPA 159

Query:   132 IGDDSEAVVCATGFQPGW--DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA 189
             +G+ S  ++C  G       D+  P+++D   T NLV+A     VN FIL++S+  N   
Sbjct:   160 LGNAS-VIICCIGASEKEISDITGPYRIDYLATKNLVDAATSAKVNNFILVTSLGTNKFG 218

Query:   190 MGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPT 239
                   PA I LN+F   L  K +AE+ + +SG+NY I+RPGG+  E PT
Sbjct:   219 F-----PAAI-LNLFWGVLCWKRKAEEALIESGLNYAIVRPGGM--ERPT 260

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

UNIPROTKB|Q71X34 LMOf2365_2365 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 55/180 (30%), Positives = 90/180 (50%)

Query:    69 IFVAGATGSSGKRIVEQL-LAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
             + V GA G  G+ +VE+L + KGF V+A VR   KA+     +    + + AD+ +    
Sbjct:     3 VLVIGANGKIGRLLVEKLAMEKGFFVRAMVR---KAEQVSELEKLGAKPIIADLKKD--- 56

Query:   128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
                A  D+ EAV+   G            +D  G +  +E  +++GV RFI++SS   + 
Sbjct:    57 FHYAY-DEIEAVIFTAGSGGHTPASETINIDQNGAIKAIETAKEKGVRRFIIVSSYGADN 115

Query:   188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETE 247
                G    P  +        L AK  A++ +++SG++YTI+RP GL ++P TG I   +E
Sbjct:   116 PENG----PESLIHY-----LKAKQAADEELKRSGLDYTIVRPVGLSDDPATGKIAEVSE 166

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000004696 YMR090W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 53/178 (29%), Positives = 89/178 (50%)

Query:    68 KIFVAGATGSSGKRIVEQLLAK-GFAVK-AGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
             K+ V GA+G  G+ ++ QL A   F+   A VR  D+      K+   +     D+   S
Sbjct:     5 KVAVVGASGKVGRLLINQLKANDSFSTPLAIVRTQDQVN--YFKNEVGVDASLTDIENAS 62

Query:   126 -AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
              +++++AI    +AVV + G   G  +   + VD  G + +VEAC K G+ RF+++S++ 
Sbjct:    63 VSEITDAI-KAYDAVVFSAG-AGGKGMERIFTVDLDGCIKVVEACEKAGIKRFVVVSALK 120

Query:   185 VNGAAMGQILNPAYIFLNVFGLT--LIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
                            + N+ GL    IAK  A++ +R S ++YTI++PG L     TG
Sbjct:   121 AEDRDF---------WYNIKGLREYYIAKRSADREVRNSNLDYTILQPGSLELNKGTG 169

GO:0003674 "molecular_function" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180019 PCB2 "PALE-GREEN AND CHLOROPHYLL B REDUCED 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 61/198 (30%), Positives = 92/198 (46%)

Query:    44 INSTKMGKSEI-TEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAV------KAG 96
             I+S   G SEI T  +  N S K   + V G+TG  G+ +V++++ +GF V      K+G
Sbjct:    60 ISSLDSGISEIATSPSFRNKSPKDINVLVVGSTGYIGRFVVKEMIKRGFNVIAVAREKSG 119

Query:    97 VRDLDKAKTTLSKDNPSLQIVKADVTEGSA--KLSEAIGDDSEAVVCATGFQPGWDLFAP 154
             +R  +  + TL K      +  +DVTE     K  E +G   + VV     + G  +   
Sbjct:   120 IRGKNDKEETL-KQLQGANVCFSDVTELDVLEKSIENLGFGVDVVVSCLASRNG-GIKDS 177

Query:   155 WKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ- 213
             WK+D   T N + A +K G   F+L+S+I V          P   F     L   A+L  
Sbjct:   178 WKIDYEATKNSLVAGKKFGAKHFVLLSAICVQ--------KPLLEFQRA-KLKFEAELMD 228

Query:   214 -AEQYIRKSGINYTIIRP 230
              AEQ  + S   Y+I+RP
Sbjct:   229 LAEQ--QDSSFTYSIVRP 244

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;IMP;TAS

GO:0051744 "3,8-divinyl protochlorophyllide a 8-vinyl reductase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2015651 HCF173 "high chlorophyll fluorescence phenotype 173" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
 Identities = 36/101 (35%), Positives = 52/101 (51%)

Query:    69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
             + V GAT   G+ +V +L+ +G+ VKA VR  D+    +S    S+ IV  DV E S  L
Sbjct:   165 VLVVGATSRIGRIVVRKLMLRGYTVKALVRKQDEE--VMSMLPRSVDIVVGDVGEPST-L 221

Query:   129 SEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEA 168
               A+   S+ + CAT       DL    +VD+ G  NL +A
Sbjct:   222 KSAVESCSKIIYCATARSTITADLT---RVDHLGVYNLTKA 259

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006413 "translational initiation" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|K7GMD9 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 138 (53.6 bits), Expect = 9.1e-08, P = 9.1e-08
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    51 KSEITE-EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK 109
             K ++T+    E++  K +K  V G +G  G+ +VEQLL +G+AV       DK +     
Sbjct:    10 KDQVTQTHLTEDIP-KDRKCTVIGGSGFLGQHMVEQLLERGYAVNV----FDKRQ---GF 61

Query:   110 DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEAC 169
             DNP +Q    D+      L  A+   S    CA+      +    ++V+  GT N++E C
Sbjct:    62 DNPRVQFFLGDLCN-QQDLYPALKGVSTVFHCASPAPSSNNKELFYRVNYIGTKNVIETC 120

Query:   170 RKRGVNRFILISSILV 185
             R+ GV + IL SS  V
Sbjct:   121 REAGVQKLILTSSASV 136

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1S2D0 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 138 (53.6 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    51 KSEITE-EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK 109
             K ++T+    E++  K +K  V G +G  G+ +VEQLL +G+AV       DK +     
Sbjct:    10 KDQVTQTHLTEDIP-KDRKCTVIGGSGFLGQHMVEQLLERGYAVNV----FDKRQ---GF 61

Query:   110 DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEAC 169
             DNP +Q    D+      L  A+   S    CA+      +    ++V+  GT N++E C
Sbjct:    62 DNPRVQFFLGDLCN-QQDLYPALKGVSTVFHCASPAPSSNNKELFYRVNYIGTKNVIETC 120

Query:   170 RKRGVNRFILISSILV 185
             R+ GV + IL SS  V
Sbjct:   121 REAGVQKLILTSSASV 136

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000074771 AN4608 [Emericella nidulans (taxid:162425)]

 Score = 136 (52.9 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 52/171 (30%), Positives = 80/171 (46%)

Query:    67 KKIFVAGATGSSGKRIVEQLLA-----KGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADV 121
             K + V GATG+ G+ ++  +LA     K F ++   RD+ K       D   ++IV AD+
Sbjct:     3 KLLTVFGATGNQGRSVINTILADPVLSKEFKIRGITRDVSKPDAKALADK-GVEIVSADM 61

Query:   122 TEGSAKLSEAI-GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
             T     L +A+ G  S  +V    F    DL    ++   G  N+ +A ++ GV   I  
Sbjct:    62 TS-IPSLEQALSGSHSVFLVTTPTFTENSDL----ELTQ-GK-NVADAAKRAGVQHLIFS 114

Query:   181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
             S + V+G+  G++ N  +     F      K Q EQYIR  GI  T + PG
Sbjct:   115 SLLNVSGSTSGRLKNVPH-----FD----HKAQVEQYIRDLGIPATFVLPG 156

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q3ZBE9 NSDHL "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 43/123 (34%), Positives = 63/123 (51%)

Query:    65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
             K K+  V G  G  G+ +VEQLLA+G+AV   V D+ +       DNP +Q    D+   
Sbjct:    19 KAKRCTVIGGCGFLGQHMVEQLLARGYAVN--VFDIRQGF-----DNPRVQFFLGDLCS- 70

Query:   125 SAKLSEAIGDDSEAVVCATG--FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
                L  A+   S    CA+   F    +LF  ++V+  GT N++E C++ GV + IL SS
Sbjct:    71 QQDLYPALKGVSTVFHCASPPPFNNNKELF--YRVNYIGTKNVIETCKEAGVQKLILTSS 128

Query:   183 ILV 185
               V
Sbjct:   129 ASV 131

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0047012 "sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H124	Y2446_ARATH	No assigned EC number	0.6558	0.8968	0.8071	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
PLN00141	251	PLN00141, PLN00141, Tic62-NAD(P)-related group II	1e-129
cd05243	203	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	1e-41
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	1e-28
cd05244	207	cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu	6e-27
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	4e-25
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	6e-21
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	2e-18
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	8e-18
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	2e-15
cd08946	200	cd08946, SDR_e, extended (e) SDRs	5e-15
cd05269	272	cd05269, TMR_SDR_a, triphenylmethane reductase (TM	5e-15
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	9e-14
PLN02657	390	PLN02657, PLN02657, 3,8-divinyl protochlorophyllid	1e-13
pfam05368	232	pfam05368, NmrA, NmrA-like family	1e-13
cd05271	273	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub	4e-12
cd05251	242	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional	5e-11
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	8e-11
CHL00194	317	CHL00194, ycf39, Ycf39; Provisional	1e-10
cd05241	331	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d	9e-10
cd05227	301	cd05227, AR_SDR_e, aldehyde reductase, extended (e	1e-09
cd08958	293	cd08958, FR_SDR_e, flavonoid reductase (FR), exten	6e-09
cd05232	303	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase,	1e-08
cd05265	250	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	2e-08
cd05234	305	cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase,	2e-08
COG1091	281	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C	3e-08
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	7e-08
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	1e-07
cd08957	307	cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic	1e-07
cd05259	282	cd05259, PCBER_SDR_a, phenylcoumaran benzylic ethe	2e-07
cd05231	259	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript	2e-07
cd05250	214	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical	3e-07
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	6e-07
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	6e-07
COG2910	211	COG2910, COG2910, Putative NADH-flavin reductase [	8e-07
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	1e-06
cd05240	306	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase	2e-06
cd09813	335	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD	2e-06
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	3e-06
cd05354	235	cd05354, SDR_c7, classical (c) SDR, subgroup 7	4e-06
cd05193	295	cd05193, AR_like_SDR_e, aldehyde reductase, flavon	4e-06
COG1086	588	COG1086, COG1086, Predicted nucleoside-diphosphate	6e-06
cd09811	354	cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD	8e-06
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	9e-06
pfam04321	284	pfam04321, RmlD_sub_bind, RmlD substrate binding d	1e-05
PLN02896	353	PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase	2e-05
cd05238	305	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n	2e-05
cd05267	203	cd05267, SDR_a6, atypical (a) SDRs, subgroup 6	2e-05
cd05266	251	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	2e-05
PLN02986	322	PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase	3e-05
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	3e-05
pfam02719	280	pfam02719, Polysacc_synt_2, Polysaccharide biosynt	3e-05
cd05237	287	cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l	3e-05
cd05254	280	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4	3e-05
PLN02662	322	PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase	5e-05
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	9e-05
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	1e-04
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	1e-04
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	2e-04
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-04
PLN02650	351	PLN02650, PLN02650, dihydroflavonol-4-reductase	2e-04
cd05350	239	cd05350, SDR_c6, classical (c) SDR, subgroup 6	6e-04
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	6e-04
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	7e-04
PLN02989	325	PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase	7e-04
cd05253	332	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera	7e-04
cd08947	224	cd08947, NmrA_TMR_like_SDR_a, NmrA (a transcriptio	0.001
PLN00198	338	PLN00198, PLN00198, anthocyanidin reductase; Provi	0.002
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	0.002
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	0.003
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	0.003
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	0.003
pfam08659	181	pfam08659, KR, KR domain	0.003
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	0.004
PRK06482	276	PRK06482, PRK06482, short chain dehydrogenase; Pro	0.004

>gnl|CDD|215072 PLN00141, PLN00141, Tic62-NAD(P)-related group II protein; Provisional

 Score =  366 bits (941), Expect = e-129
 Identities = 158/200 (79%), Positives = 177/200 (88%), Gaps = 3/200 (1%)

Query: 48  KMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL 107
            M  +E +EE  ENV  K K +FVAGATG +GKRIVEQLLAKGFAVKAGVRD+DKAKT+L
Sbjct: 1   TMEGAEASEEDAENV--KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL 58

Query: 108 SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVE 167
              +PSLQIV+ADVTEGS KL EAIGDDS+AV+CATGF+  +D FAPWKVDNFGTVNLVE
Sbjct: 59  -PQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGFRRSFDPFAPWKVDNFGTVNLVE 117

Query: 168 ACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTI 227
           ACRK GV RFIL+SSILVNGAAMGQILNPAYIFLN+FGLTL+AKLQAE+YIRKSGINYTI
Sbjct: 118 ACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRKSGINYTI 177

Query: 228 IRPGGLRNEPPTGNIIMETE 247
           +RPGGL N+PPTGNI+ME E
Sbjct: 178 VRPGGLTNDPPTGNIVMEPE 197

Length = 251

>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5

 Score =  141 bits (357), Expect = 1e-41
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 16/186 (8%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           K+ V GATG  G+ +V +LL +G+ V+A VRD  +A+     +    ++V  D+T+  + 
Sbjct: 1   KVLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAE---KLEAAGAEVVVGDLTDAES- 56

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
              A  +  +AV+ A G            VD  G +NL++A +K GV RF+L+SSI    
Sbjct: 57  -LAAALEGIDAVISAAGSGGK-GGPRTEAVDYDGNINLIDAAKKAGVKRFVLVSSI--GA 112

Query: 188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPP-TGNIIMET 246
                        L   G  L AK +AE Y+R SG++YTI+RPGGL ++P  TG +++  
Sbjct: 113 DKPSH-------PLEALGPYLDAKRKAEDYLRASGLDYTIVRPGGLTDDPAGTGRVVLGG 165

Query: 247 EVRAFI 252
           +     
Sbjct: 166 DGTRLD 171

This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score =  106 bits (267), Expect = 1e-28
 Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 24/177 (13%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG +G+R+V++LLA+G  V A  R+  KA        P +  V+ D+ + +  L
Sbjct: 1   IAVIGATGKTGRRLVKELLARGHQVTALSRNPSKA------PAPGVTPVQKDLFDLAD-L 53

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS--ILVN 186
           +EA+    +AVV A G             D+ G  +L++A  + GV R +++S+  +  +
Sbjct: 54  AEAL-AGVDAVVDAFG---------ARPDDSDGVKHLLDAAARAGVRRIVVVSAAGLYRD 103

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNII 243
                ++ +       +F     AK  AE+ +R SG+++TI+RPG L +E      I
Sbjct: 104 EPGTFRLDDA-----PLFPPYARAKAAAEELLRASGLDWTIVRPGALFDEEGETYEI 155

Length = 182

>gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs

 Score =  103 bits (258), Expect = 6e-27
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 10/177 (5%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KI + GATG +G  IV + LA+G  V A VRD       L  ++  L++V+ DV +    
Sbjct: 1   KIAIIGATGRTGSAIVREALARGHEVTALVRD----PAKLPAEHEKLKVVQGDVLD-LED 55

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
           + EA+ +  +AV+ A       DL         GT N+V A +  GV R I++       
Sbjct: 56  VKEAL-EGQDAVISA--LGTRNDLSPTTLHSE-GTRNIVSAMKAAGVKRLIVVGGAGSLD 111

Query: 188 AAMGQILNPAYI-FLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNII 243
                 L    + F            +  + +R+SG+++T +RP  L +   TG   
Sbjct: 112 DRPKVTLVLDTLLFPPALRRVAEDHARMLKVLRESGLDWTAVRPPALFDGGATGGYY 168

Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score =  103 bits (257), Expect = 4e-25
 Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 28/253 (11%)

Query: 4   PLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGK--SEITEEAEEN 61
             + +           Q  LR    +KH      ++      ++   K  S   E   + 
Sbjct: 16  TSLTKCGFIEKPFLHGQL-LRFPGFSKHPHSRKLRSLDIKAQASGATKFSSAAIEAIPKE 74

Query: 62  VSVKQKKI-FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT------TLSKDNPS- 113
           +  K + + FVAGATG  G R V +LL  GF V+AGVR   +A++       +  D    
Sbjct: 75  LDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGT 134

Query: 114 -----LQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLV 166
                L+IV+ D+ E   ++  A+G+ S  V+C  G      +D+  P+++D   T NLV
Sbjct: 135 QPVEKLEIVECDL-EKPDQIGPALGNAS-VVICCIGASEKEVFDVTGPYRIDYLATKNLV 192

Query: 167 EACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT 226
           +A     VN FIL++S+  N     ++  PA I LN+F   L  K +AE+ +  SG+ YT
Sbjct: 193 DAATVAKVNHFILVTSLGTN-----KVGFPAAI-LNLFWGVLCWKRKAEEALIASGLPYT 246

Query: 227 IIRPGGLRNEPPT 239
           I+RPGG+  E PT
Sbjct: 247 IVRPGGM--ERPT 257

Length = 576

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 89.2 bits (221), Expect = 6e-21
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 15/177 (8%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            +I V G  G  G  +VE+LLA G  V+   R  D            ++ V  D+T+   
Sbjct: 1   MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP----LLSGVEFVVLDLTDRDL 56

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNF-----GTVNLVEACRKRGVNRFILIS 181
            + E      +AV+         D  A    +       GT+NL+EA R  GV RF+  S
Sbjct: 57  -VDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFAS 115

Query: 182 SILVN-GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI----RKSGINYTIIRPGGL 233
           S+ V  G      ++             ++KL AEQ +    R  G+   I+RP  +
Sbjct: 116 SVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNV 172

Length = 314

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I + GATG  G+ +  +LL +G  V   VR+  +       D   + +V+ D+ +    L
Sbjct: 1   ILILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKE---DQEPVAVVEGDLRD-LDSL 56

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
           S+A+    + V+   G     D     +VD  GT N++EA ++ GV  FI ISS+   G 
Sbjct: 57  SDAV-QGVDVVIHLAG--APRDTRDFCEVDVEGTRNVLEAAKEAGVKHFIFISSLGAYGD 113

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
              +                  K + E  +R++ + YTI+RPG +
Sbjct: 114 LHEETEPSPSSPYLAV------KAKTEAVLREASLPYTIVRPGVI 152

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 80.8 bits (200), Expect = 8e-18
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG  G  +V  LLA+G+ V+A VR    A      D   +++V+ D+T+ ++ L
Sbjct: 1   ILVTGATGFLGSNLVRALLAQGYRVRALVRSGSDAVLL---DGLPVEVVEGDLTDAAS-L 56

Query: 129 SEAIGDDSEAVVCATGF----QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
           + A+    + V     F             ++ +  GT N+++A  + GV R +  SSI 
Sbjct: 57  AAAM-KGCDRVFHLAAFTSLWAKDRKEL--YRTNVEGTRNVLDAALEAGVRRVVHTSSIA 113

Query: 185 VNGAAMGQILN-----PAYIFLNVFGLTLIAKLQAEQYIRK---SGINYTIIRPG 231
             G      ++         F N +  +   KL AE  + +    G++  I+ P 
Sbjct: 114 ALGGPPDGRIDETTPWNERPFPNDYYRS---KLLAELEVLEAAAEGLDVVIVNPS 165

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 25/182 (13%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-----TTLSKDNPSLQIVKADVTE 123
           +FV G TG  G+ +V++LL  GF V   VR     +          +   +++++ D+T+
Sbjct: 1   VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQ 60

Query: 124 GSAKLSEAIGDDSEAVV--------CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN 175
            +  LS A    S  +         CA  +         W+ +  GT +++E   +  + 
Sbjct: 61  PNLGLSAA---ASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDGTEHVLELAARLDIQ 117

Query: 176 RFILISSILVNGAAMGQI----LNPAYIFLNVFGLTLIAKLQAEQYIRKSG--INYTIIR 229
           RF  +S+  V G   G I    LNP   F N +  +   K +AEQ +R +   I  T+ R
Sbjct: 118 RFHYVSTAYVAGNREGNIRETELNPGQNFKNPYEQS---KAEAEQLVRAAATQIPLTVYR 174

Query: 230 PG 231
           P 
Sbjct: 175 PS 176

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 50/173 (28%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V G  G  G  +V +LL +G  V                                   
Sbjct: 1   ILVTGGAGFIGSHLVRRLLERGHEVV---------------------------------- 26

Query: 129 SEAIGDDSEAVV---CATGFQPGWDLFAPWKVDNF-GTVNLVEACRKRGVNRFILISSIL 184
              + D  + VV      G    WD        N  GT+NL+EA RK GV RF+  SS  
Sbjct: 27  ---VIDRLDVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSAS 83

Query: 185 VNGAAMGQILNPAYIF--LNVFGLTLIAKLQAEQYIR----KSGINYTIIRPG 231
           V G+  G           L+ +G++   KL AE  +R      G+   I+R  
Sbjct: 84  VYGSPEGLPEEEETPPRPLSPYGVS---KLAAEHLLRSYGESYGLPVVILRLA 133

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 27/163 (16%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG  G  +VE LLAK  +V A VR+ +KAK   +     +++ + D  +    L
Sbjct: 1   ILVTGATGKLGTAVVELLLAKVASVVALVRNPEKAKAFAADG---VEVRQGDYDD-PETL 56

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
             A  +  + ++         DL     +      N ++A ++ GV   + +S+    GA
Sbjct: 57  ERAF-EGVDRLL----LISPSDLEDR--IQQHK--NFIDAAKQAGVKHIVYLSAS---GA 104

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
                   A                 E+Y+  SGI YTI+RPG
Sbjct: 105 DEDSPFLLA-----------RDHGATEKYLEASGIPYTILRPG 136

TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 68.1 bits (167), Expect = 9e-14
 Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 24/190 (12%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V G TG  G  +V +LL +G+ V    R     + + S +   ++  + D+T+  A L
Sbjct: 1   ILVTGGTGFIGSHLVRRLLQEGYEVIVLGR----RRRSESLNTGRIRFHEGDLTDPDA-L 55

Query: 129 SEAIGDDS-EAVVCATGFQPGWDLFAP----WKVDNFGTVNLVEACRKRGVNRFILISSI 183
              + +   +AV+           F       + +  GT+ L+EA R+ GV RF+  SS 
Sbjct: 56  ERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVFASSS 115

Query: 184 LVNGAAMGQILNPAYIF--LNVFGLTLIAKLQAEQ----YIRKSGINYTIIRPG-----G 232
            V G      +        L+ +     AKL AE+    Y R  G+   I+R       G
Sbjct: 116 EVYGDVADPPITEDTPLGPLSPYA---AAKLAAERLVEAYARAYGLRAVILRLFNVYGPG 172

Query: 233 LRNEPPTGNI 242
             +   T  I
Sbjct: 173 NPDPFVTHVI 182

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 21/173 (12%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-----DKAKTTLSKDNPSLQIVKA 119
           K   + V GATG  GK +V +L+ +G+ V A  R+         K    K+ P  ++V  
Sbjct: 59  KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFG 118

Query: 120 DVTEGSA--KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRF 177
           DVT+  +  K+  + GD  + VV     + G    + WK+D   T N ++A R+ G   F
Sbjct: 119 DVTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDS-WKIDYQATKNSLDAGREVGAKHF 177

Query: 178 ILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRP 230
           +L+S+I V          P   F     L   A+LQA      S   Y+I+RP
Sbjct: 178 VLLSAICVQ--------KPLLEFQRA-KLKFEAELQALD----SDFTYSIVRP 217

Length = 390

>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 45/163 (27%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG  G  +V   L  G  V+A VRD         K     ++V+ D+ +    L
Sbjct: 1   ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGV-ELVEGDLDD-HESL 58

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
            EA+    + V   TGF          K        L +A ++ GV  FI  S       
Sbjct: 59  VEAL-KGVDVVFSVTGFWLS-KEIEDGK-------KLADAAKEAGVKHFIP-SEF----G 104

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
                 N     +  F     +K + E+YIR  GI YT +  G
Sbjct: 105 NDVDRSNGVEPAVPHFD----SKAEVERYIRALGIPYTFVYAG 143

NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232

>gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 21/168 (12%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTLSKDNPSLQIVKADVTEGS 125
             + V GATG  G+ +V +L  +G  V    R      +  +  D   +  V+ D+ +  
Sbjct: 1   MVVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYARRLLVMGDLGQVLFVEFDLRDD- 59

Query: 126 AKLSEAIGDDSEAVVCATG--FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
             + +A+ + S+ V+   G  ++     F    V   G   L +A ++ GV R I IS  
Sbjct: 60  ESIRKAL-EGSDVVINLVGRLYETKNFSF--EDVHVEGPERLAKAAKEAGVERLIHIS-- 114

Query: 184 LVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
                A+G   N    +       L +K + E+ +R++    TI+RP 
Sbjct: 115 -----ALGADANSPSKY-------LRSKAEGEEAVREAFPEATIVRPS 150

This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273

>gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 26/166 (15%)

Query: 69  IFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           I V GATG  G  +V  LL   GF V+A  RD            P +++V+ D+ +  + 
Sbjct: 1   ILVFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAAKALAA-PGVEVVQGDLDDPES- 58

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNF--GTVNLVEACRKRGVNRFILISSILV 185
           L  A+      V   T F      +     D    G  N+V+A ++ GV  F+  SS + 
Sbjct: 59  LEAAL-KGVYGVFLVTDF------WEAGGEDEIAQGK-NVVDAAKRAGVQHFV-FSS-VP 108

Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
           +     ++      F +        K + E+YIR SG+  TI+RP 
Sbjct: 109 DVE---KLTLAVPHFDS--------KAEVEEYIRASGLPATILRPA 143

NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 60.3 bits (146), Expect = 8e-11
 Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 23/167 (13%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            KI V GATG  G  +V +LLA+G  V+A VR+ + A          +++V  D+ +   
Sbjct: 1   MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAA----ALAGGVEVVLGDLRD--P 54

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
           K   A     + V+  +G   G D F    V     V   EA    GV   + +S     
Sbjct: 55  KSLVAGAKGVDGVLLISGLLDGSDAFR--AVQVTAVVRAAEAAGA-GVKHGVSLS----- 106

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
                   +P+ +          AK   E  +R SGI YT +R    
Sbjct: 107 -VLGADAASPSALA--------RAKAAVEAALRSSGIPYTTLRRAAF 144

Length = 275

>gnl|CDD|177093 CHL00194, ycf39, Ycf39; Provisional

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 26/167 (15%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V GATG+ G++IV Q L +G+ V+  VR+L KA          L+   A++  G   L
Sbjct: 3   LLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASF--------LKEWGAELVYGDLSL 54

Query: 129 SEAIGDDSE---AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
            E +    +   A++ A+  +P  DL+   ++D  G + L+EA +   + RFI  S    
Sbjct: 55  PETLPPSFKGVTAIIDASTSRPS-DLYNAKQIDWDGKLALIEAAKAAKIKRFIFFS---- 109

Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG 232
                  ILN A  +  +  + L  K   EQ ++KSGI YTI R  G
Sbjct: 110 -------ILN-AEQYPYIPLMKL--KSDIEQKLKKSGIPYTIFRLAG 146

Length = 317

>gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA--KTTLSKDN-PSLQIVKADVTEGSAK 127
           V G +G  G+R+V+QLL +G      VR  D A     LS    P+++ +K D+T+ +  
Sbjct: 4   VTGGSGFFGERLVKQLLERG---GTYVRSFDIAPPGEALSAWQHPNIEFLKGDITDRND- 59

Query: 128 LSEAIGDDSEAVVCAT--GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
           + +A+         A         DL+  W+V+  GT N+++AC++ GV +F+  SS  V
Sbjct: 60  VEQALSGADCVFHTAAIVPLAGPRDLY--WEVNVGGTQNVLDACQRCGVQKFVYTSSSSV 117

Query: 186 NG 187
             
Sbjct: 118 IF 119

Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331

>gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 14/127 (11%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA---KTTLSKD--NPSLQIVKADVT 122
            + V GATG     IVEQLL  G+ V+  VR L K+   K  L     N  L+ V  D  
Sbjct: 1   LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLEFVIVDDL 60

Query: 123 EGSAKLSEAIGDDSEAVVCA-----TGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNR 176
                  EA+      +  A     TG     D+  P  V+  GT+N++EA +  G V R
Sbjct: 61  TAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDP-AVE--GTLNVLEAAKAAGSVKR 117

Query: 177 FILISSI 183
            +L SS+
Sbjct: 118 VVLTSSV 124

This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301

>gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 19/126 (15%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKADVT-EG 124
           V GA+G  G  +V++LL +G+ V+A VRD    K       L      L++ KAD+   G
Sbjct: 3   VTGASGFIGSWLVKRLLQRGYTVRATVRDPGDEKKVAHLLELEGAKERLKLFKADLLDYG 62

Query: 125 SAKLSEAIGDDSEAVVC-ATGFQPG-----WDLFAPWKVDNFGTVNLVEACRK-RGVNRF 177
           S     AI D  + V   A+           ++  P  V   GT+N++EAC K + V R 
Sbjct: 63  S--FDAAI-DGCDGVFHVASPVDFDSEDPEEEMIEP-AVK--GTLNVLEACAKAKSVKRV 116

Query: 178 ILISSI 183
           +  SS+
Sbjct: 117 VFTSSV 122

This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 35/180 (19%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           K+ V GA G  G+ +V++LL++G  V+  VR   +   + +  + P +            
Sbjct: 1   KVLVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVLAELPDIDSFTDLF----- 55

Query: 127 KLSEAIGDDSEAVV-CA--------TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRF 177
                     +AVV  A         G  P  D     KV+   T  L  A  ++GV RF
Sbjct: 56  -------LGVDAVVHLAARVHVMNDQGADPLSDYR---KVNTELTRRLARAAARQGVKRF 105

Query: 178 ILISSILVNGAA-MGQILNPAYIFLNV--FGLTLIAKLQAEQYIRK----SGINYTIIRP 230
           + +SS+ VNG   +G   +          +G    +KL+AE+ + +     G+   I+RP
Sbjct: 106 VFLSSVKVNGEGTVGAPFDETDPPAPQDAYG---RSKLEAERALLELGASDGMEVVILRP 162

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303

>gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 43/177 (24%), Positives = 61/177 (34%), Gaps = 35/177 (19%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            KI + G T   GK +VE+LLA G  V    R       T       ++ +  D  +  A
Sbjct: 1   MKILIIGGTRFIGKALVEELLAAGHDVTVFNR-----GRTKPDLPEGVEHIVGDRNDRDA 55

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTV-----NLVEACRKRGVNRFILIS 181
            L E +G               +D      VD            ++A + R V ++I IS
Sbjct: 56  -LEELLGG------------EDFD----VVVDTIAYTPRQVERALDAFKGR-VKQYIFIS 97

Query: 182 SILVNGAAMGQIL------NPAYIFLNVFGLTLIAKLQAEQY-IRKSGINYTIIRPG 231
           S  V       I        P  + L+        K  AE   I  +   YTI+RP 
Sbjct: 98  SASVYLKPGRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEAAAFPYTIVRPP 154

Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250

>gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 24/176 (13%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGS 125
           I V G  G  G  +V++LL +G  V   V +L   +    +   +N + + VK D+ + +
Sbjct: 2   ILVTGGAGFIGSHLVDRLLEEGNEVVV-VDNLSSGRRENIEPEFENKAFRFVKRDLLDTA 60

Query: 126 AKLSEAIGDD-----SEAVVCATGFQPGWDLFAPWKVDNF-GTVNLVEACRKRGVNRFIL 179
            K+++  GD      +   V      P  DL      +N   T N++EA R  GV R + 
Sbjct: 61  DKVAKKDGDTVFHLAANPDVRLGATDPDIDLE-----ENVLATYNVLEAMRANGVKRIVF 115

Query: 180 ISSILVNGAAMGQIL--NPAYIFLNVFGLTLIAKLQAEQYI----RKSGINYTIIR 229
            SS  V G A       +   + ++V+G    +KL AE  I       G    I R
Sbjct: 116 ASSSTVYGEAKVIPTPEDYPPLPISVYG---ASKLAAEALISAYAHLFGFQAWIFR 168

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 44/178 (24%), Positives = 66/178 (37%), Gaps = 41/178 (23%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVR------DLDKAKTTLSKDNPSLQIVKADV 121
           KI + GA G  G  +   L    F V A  R      D D     + +  P + I  A  
Sbjct: 2   KILITGANGQLGTELRRAL-PGEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAY 60

Query: 122 TEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS 181
           T     + +A  +   A                + V+  G  NL  A  + G  R + IS
Sbjct: 61  T----AVDKAESEPELA----------------FAVNATGAENLARAAAEVGA-RLVHIS 99

Query: 182 SILV-NGAAMGQ-----ILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
           +  V +G   G        NP    LNV+G +   KL  E+ +R +G  + I+R   +
Sbjct: 100 TDYVFDGEKGGPYKETDTPNP----LNVYGRS---KLAGEEAVRAAGPRHLILRTSWV 150

Length = 281

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 14/166 (8%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           K+FV GATG  G  +V +L+A G  V    R  D     L       Q+ + D+ +    
Sbjct: 2   KVFVTGATGFIGSAVVRELVAAGHEVVGLARS-DAGAAKLE--AAGAQVHRGDLEDLDIL 58

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLF-APWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
              A   +++AV+    F   +D F    +VD      L EA R  G    I  S I + 
Sbjct: 59  RKAAA--EADAVI-HLAFTHDFDNFAQACEVDRRAIEALGEALRGTGK-PLIYTSGIWLL 114

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS---GINYTIIR 229
           G   GQ  +           T  A+  +E    +    G+  +++R
Sbjct: 115 GPTGGQEEDEEAPD---DPPTPAARAVSEAAALELAERGVRASVVR 157

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 36/186 (19%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-LSKDNPSLQIVKA---DVTEGSA 126
           V G  G  G+ IV  LL +G      VR  D   +  L +D   LQ++     DVT+   
Sbjct: 2   VTGGGGFLGRHIVRLLLREG--ELQEVRVFDLRFSPELLEDFSKLQVITYIEGDVTD-KQ 58

Query: 127 KLSEAIGDDSEAVV---CATGFQPGWDLFAP------WKVDNFGTVNLVEACRKRGVNRF 177
            L  A+   S+ V+            D+F         KV+  GT N+++AC K GV   
Sbjct: 59  DLRRAL-QGSDVVIHTAAII------DVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVL 111

Query: 178 ILISSILVNGAAM-GQI-------LNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 229
           +  SS+ V G    GQ                + +  +   K  AE+ + K+  N + ++
Sbjct: 112 VYTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPES---KALAEKLVLKA--NGSTLK 166

Query: 230 PGGLRN 235
            GG   
Sbjct: 167 NGGRLY 172

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            K+ + G  G  G  ++E LL +G  V   + +    +     D+P+L +V+  + +  A
Sbjct: 1   MKVLITGGAGQIGSHLIEHLLERGHQV-VVIDNFATGRREHLPDHPNLTVVEGSIAD-KA 58

Query: 127 KLSEAIGDDS-EAVV-CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
            + +  GD   +AVV  A  ++   D +     +  G  N+V+A +K GV R I   + L
Sbjct: 59  LVDKLFGDFKPDAVVHTAAAYKDPDDWYEDTLTNVVGGANVVQAAKKAGVKRLIYFQTAL 118

Query: 185 VNGAAMGQILNPAYIFLN-----VFGLTLIAKLQAEQYIRKSGINYTIIR 229
             G  +  +  P  I L+           I+K   E Y+  SG+++   R
Sbjct: 119 CYG--LKPMQQP--IRLDHPRAPPGSSYAISKTAGEYYLELSGVDFVTFR 164

Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307

>gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 68  KIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           KI +AGATG+ G  IV  LLA  GF V    R    +          +++V  D      
Sbjct: 1   KIAIAGATGTLGGPIVSALLASPGFTVTVLTRPSSTSSNEFQ--PSGVKVVPVDYAS-HE 57

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFI 178
            L  A+    +AV+ A G            + +   + L++A    GV RFI
Sbjct: 58  SLVAAL-KGVDAVISALGGAA---------IGDQ--LKLIDAAIAAGVKRFI 97

PCBER and pinoresinol-lariciresinol reductases are NADPH-dependent aromatic alcohol reductases, and are atypical members of the SDR family. Other proteins in this subgroup are identified as eugenol synthase. These proteins contain an N-terminus characteristic of NAD(P)-binding proteins and a small C-terminal domain presumed to be involved in substrate binding, but they do not have the conserved active site Tyr residue typically found in SDRs. Numerous other members have unknown functions. The glycine rich NADP-binding motif in this subgroup is of 2 forms: GXGXXG and G[GA]XGXXG; it tends to be atypical compared with the forms generally seen in classical or extended SDRs. The usual SDR active site tetrad is not present, but a critical active site Lys at the usual SDR position has been identified in various members, though other charged and polar residues are found at this position in this subgroup. Atypical SDR-related proteins retain the Rossmann fold of the SDRs, but have limited sequence identity and generally lack the catalytic properties of the archetypical members. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 282

>gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 22/163 (13%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG  G ++   LL  G  V+A VR  ++A    ++     ++V  D+    A L
Sbjct: 1   ILVTGATGRIGSKVATTLLEAGRPVRALVRSDERAAALAAR---GAEVVVGDLD-DPAVL 56

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
           + A+         A    P  D   P  V          A R+ GV R + +SS+   GA
Sbjct: 57  AAALAGVDAVFFLAPP-APTADAR-PGYVQ-AAEA-FASALREAGVKRVVNLSSV---GA 109

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
                 +P+       GL     L  EQ +  +G+    +RP 
Sbjct: 110 ---DPESPS-------GLIRGHWL-MEQVLNWAGLPVVHLRPA 141

Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259

>gnl|CDD|187560 cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 47/184 (25%), Positives = 65/184 (35%), Gaps = 49/184 (26%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K   V GATG  GK ++ +LL   +   V A VR                   K    E 
Sbjct: 1   KTALVLGATGLVGKHLLRELLKSPYYSKVTAIVRR------------------KLTFPEA 42

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLF--------------APWKVDNFGTVNLVEACR 170
             KL + + D          FQ     F                 KVD+   + L +  +
Sbjct: 43  KEKLVQIVVDFERLDEYLEAFQNPDVGFCCLGTTRKKAGSQENFRKVDHDYVLKLAKLAK 102

Query: 171 KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTII-R 229
             GV  F+L+SS+   GA      +P   F     L L  K + E+ ++K G     I R
Sbjct: 103 AAGVQHFLLVSSL---GA------DPKSSF-----LYLKVKGEVERDLQKLGFERLTIFR 148

Query: 230 PGGL 233
           PG L
Sbjct: 149 PGLL 152

Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 214

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 34/182 (18%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           ++ + G  G  G  +V+ LL +G  V+      D++          +  +K D  E  A 
Sbjct: 1   RVLIVGGNGFIGSHLVDALLEEGPQVRV----FDRSIPPYELPLGGVDYIKGD-YENRAD 55

Query: 128 LSEAIGDDSEAV---VCAT-----GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
           L  A+    + V      T        P  D+      +   TV L+EAC   G+ + I 
Sbjct: 56  LESAL-VGIDTVIHLASTTNPATSNKNPILDIQT----NVAPTVQLLEACAAAGIGKIIF 110

Query: 180 ISSILVNGAAMGQILNPAY------IFLNVFGLTLIAKLQAEQYIR----KSGINYTIIR 229
            SS    G   G             + ++ +G++   KL  E+Y+R      G++YT++R
Sbjct: 111 ASS---GGTVYGVPEQLPISESDPTLPISSYGIS---KLAIEKYLRLYQYLYGLDYTVLR 164

Query: 230 PG 231
             
Sbjct: 165 IS 166

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 27/198 (13%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            K+ V GATG  G  +V  LL +G  V+  VR     +     D   ++IV+ D+ +  A
Sbjct: 1   MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLD---VEIVEGDLRDP-A 56

Query: 127 KLSEAI-GDDSEAVVCATGFQPGWDLFAP-----WKVDNFGTVNLVEACRKRGVNRFILI 180
            L +A+ G  +   V A      + L+AP     +  +  GT NL+ A  + GV R +  
Sbjct: 57  SLRKAVAGCRALFHVAAD-----YRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYT 111

Query: 181 SSILVNG-AAMGQILNPAY--IFLNVFGLTLIAKLQAEQ----YIRKSGINYTIIRPG-- 231
           SS+   G    G   +        ++ G    +K  AEQ       + G+   I+ P   
Sbjct: 112 SSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIVNPSTP 171

Query: 232 -GLRN-EP-PTGNIIMET 246
            G R+ +P PTG II++ 
Sbjct: 172 IGPRDIKPTPTGRIIVDF 189

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 18/124 (14%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            KI + GA+G +G RI+++ L +G  V A VR  + +K    +    + I++ D+ + ++
Sbjct: 1   MKIAIIGASGKAGSRILKEALKRGHEVTAIVR--NASKLAARQG---VTILQKDIFDLTS 55

Query: 127 KLSEAIGDDSEAVVCATGF-QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
             S+  G D  AV+ A G      D      ++      L+EA +  GV R      ++V
Sbjct: 56  LASDLAGHD--AVISAFGAGASDNDELHSKSIE-----ALIEALKGAGVPRL-----LVV 103

Query: 186 NGAA 189
            GA 
Sbjct: 104 GGAG 107

Length = 211

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 19/178 (10%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL--SKDNPSLQIVKADVTEGS 125
            + V GA G  G  + E+LL +G  V+A           L  +  +     +  DV    
Sbjct: 1   NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVR--D 58

Query: 126 AKLSEAIGDDSEAVV-CATGFQPGWDLFAPWKV---DNFGTVNLVEACRKRGVNRFILIS 181
           A   E +    + V   A      +   AP      + FGT+N++EA       R +  S
Sbjct: 59  ASEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTS 118

Query: 182 SILVNGAAMGQIL-----NPAYIFLNVFGLTLIAKLQAEQ----YIRKSGINYTIIRP 230
           +  V G    Q +     +P             +K  A++    Y R  G+  TIIRP
Sbjct: 119 TSEVYG--TAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRP 174

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 26/178 (14%)

Query: 69  IFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           I V GA G  G+ +  +L A      V      LD+ +   S   P ++ V+ D+     
Sbjct: 1   ILVTGAAGGLGRLLARRLAASPRVIGVDG----LDRRRPPGSP--PKVEYVRLDIR--DP 52

Query: 127 KLSEAIGD-DSEAVV-CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
             ++   + +++AVV  A    P  D     +++  GT N+++AC   GV R ++ SS+ 
Sbjct: 53  AAADVFREREADAVVHLAFILDPPRDGAERHRINVDGTQNVLDACAAAGVPRVVVTSSVA 112

Query: 185 VNGAAMGQILNPAYIFLN--VFGLTLIA----KLQAEQYI-----RKSGINYTIIRPG 231
           V GA      NPA +  +  + G    A    K + EQ +     R   +N T++RP 
Sbjct: 113 VYGAHPD---NPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTVLRPA 167

Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306

>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 71  VAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLS 129
           V G +G  G+ +VEQLL +G   V   V D+          +  +Q    D+T+    L 
Sbjct: 4   VVGGSGFLGRHLVEQLLRRGNPTVH--VFDIRPTFELDPSSSGRVQFHTGDLTD-PQDLE 60

Query: 130 EAIGDDSEAVVCATG---FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
           +A  +    VV  T         DL+  +KV+  GT N++EACRK GV + +  SS
Sbjct: 61  KAFNEKGPNVVFHTASPDHGSNDDLY--YKVNVQGTRNVIEACRKCGVKKLVYTSS 114

This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 43/174 (24%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-LSKDNPSLQIVKADVT--EG 124
           ++ V G  G  G  +VE+LL +G  V   + +L   K   L +  P+++ ++ D+   E 
Sbjct: 1   RVLVTGGAGFIGSHLVERLLERGHEV-IVLDNLSTGKKENLPEVKPNVKFIEGDIRDDEL 59

Query: 125 SAKLSE---------AIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN 175
                E         A      ++       P  D     +V+  GT+NL+EA RK GV 
Sbjct: 60  VEFAFEGVDYVFHQAAQASVPRSIE-----DPIKDH----EVNVLGTLNLLEAARKAGVK 110

Query: 176 RFILISSILVNGAAMG----------QILNPAYIFLNVFGLTLIAKLQAEQYIR 219
           RF+  SS     +  G             NP    L+ + ++   K   E Y +
Sbjct: 111 RFVYASS----SSVYGDPPYLPKDEDHPPNP----LSPYAVS---KYAGELYCQ 153

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 17/145 (11%)

Query: 64  VKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVT 122
           +K K + V GA    GK  VE LLA G   V A VRD   A   ++K    +  ++ DVT
Sbjct: 1   IKDKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVAKYGDKVVPLRLDVT 60

Query: 123 E-GSAKLSEAIGDDSEAVVCATGFQPGWDLFAP---------WKVDNFGTVNLVEA---- 168
           +  S K + A   D + V+   G      L              V+ FG + L +A    
Sbjct: 61  DPESIKAAAAQAKDVDVVINNAGVLKPATLLEEGALEALKQEMDVNVFGLLRLAQAFAPV 120

Query: 169 CRKRGVNRFILISSI--LVNGAAMG 191
            +  G    + ++S+  L N  AMG
Sbjct: 121 LKANGGGAIVNLNSVASLKNFPAMG 145

These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235

>gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 10/120 (8%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSE 130
           V GA+G     +VEQLL +G+ V+A VRD  K K         L      +    A L++
Sbjct: 3   VTGASGFVASHVVEQLLERGYKVRATVRDPSKVK--KVNHLLDLDAKPGRLELAVADLTD 60

Query: 131 AIGDDSEAVVCATGFQPGWDL-FAPWKVDNF------GTVNLVEACRKRG-VNRFILISS 182
               D     CA  F     + F+    +        GT+N ++A      V RF+L SS
Sbjct: 61  EQSFDEVIKGCAGVFHVATPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVKRFVLTSS 120

This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295

>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 46/177 (25%), Positives = 67/177 (37%), Gaps = 49/177 (27%)

Query: 64  VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE 123
           +  K + V G  GS G  +  Q+L              K     S+D   L ++  ++ E
Sbjct: 248 LTGKTVLVTGGGGSIGSELCRQILKFN----------PKEIILFSRDEYKLYLIDMELRE 297

Query: 124 --GSAKLSEAIGD--DSEAVVCA-TGFQPGWDL--------------FAP---WKVDNFG 161
                KL   IGD  D + V  A  G +   D+              + P    K +  G
Sbjct: 298 KFPELKLRFYIGDVRDRDRVERAMEGHKV--DIVFHAAALKHVPLVEYNPEEAIKTNVLG 355

Query: 162 TVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI 218
           T N+ EA  K GV +F+LIS+         + +NP     NV G T   K  AE+  
Sbjct: 356 TENVAEAAIKNGVKKFVLIST--------DKAVNPT----NVMGAT---KRLAEKLF 397

Length = 588

>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 17/129 (13%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA--KTTLSKDNPSLQIVKADVTEGSAK- 127
           V G  G  G+ I+  LL +   +K  +R LDKA     +     S         EG  K 
Sbjct: 4   VTGGGGFLGQHIIRLLLERKEELKE-IRVLDKAFGPELIEHFEKSQGKTYVTDIEGDIKD 62

Query: 128 ---LSEAIGDDSEAVVCATGFQPGWDLFAP------WKVDNFGTVNLVEACRKRGVNRFI 178
              L  A    S  +  A       D+F P       +V+  GT  ++EAC +  V R +
Sbjct: 63  LSFLFRACQGVSVVIHTAAIV----DVFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLV 118

Query: 179 LISSILVNG 187
             SSI V G
Sbjct: 119 YTSSIEVAG 127

This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 7/77 (9%)

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKA 119
            + +K K + V GA    G+  VEQLLA+G A V A  RD +    +++   P +  ++ 
Sbjct: 1   MMDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE----SVTDLGPRVVPLQL 56

Query: 120 DVT--EGSAKLSEAIGD 134
           DVT     A  +EA  D
Sbjct: 57  DVTDPASVAAAAEAASD 73

Length = 238

>gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 45/176 (25%), Positives = 65/176 (36%), Gaps = 38/176 (21%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GA G  G+ +   L  +G  V A  R                   + D+T+  A +
Sbjct: 1   ILVTGANGQLGRELTRLLAERGVEVVALDRP------------------ELDLTDPEA-V 41

Query: 129 SEAIGDDSEAVVCATGFQPGWDL-----FAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
           +  + +    VV         D         + V+  G  NL EAC  RG    I IS+ 
Sbjct: 42  AALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACAARGA-PLIHISTD 100

Query: 184 LV-NGAAMGQ-----ILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
            V +GA  G         P    LNV+G T   KL  EQ +  +   + I+R   +
Sbjct: 101 YVFDGAKGGPYREDDPTGP----LNVYGRT---KLAGEQAVLAANPRHLILRTAWV 149

L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284

>gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 26/146 (17%)

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSL 114
              E          V GATG  G  +V+ LL +G+ V A +RD  K+   LSK  +   L
Sbjct: 1   MELEGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRL 60

Query: 115 QIVKADVT-EGSAKLSEAI-GDDSEAVVCATGFQPGWDLFAPWKVDNF------------ 160
           ++ +AD+  EGS    EA+ G D    V A+      +       +N             
Sbjct: 61  RLFRADLQEEGS--FDEAVKGCDGVFHVAAS-----MEFDVSSDHNNIEEYVQSKVIDPA 113

Query: 161 --GTVNLVEACRKRG-VNRFILISSI 183
             GT+N++++C K   V R +  SSI
Sbjct: 114 IKGTLNVLKSCLKSKTVKRVVFTSSI 139

Length = 353

>gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 30/202 (14%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           K+ + GA+G  G+R+ E+LL+     +  +  +D          P +  +  D+      
Sbjct: 2   KVLITGASGFVGQRLAERLLSDVPNER--LILIDVVSPKAPSGAPRVTQIAGDLAV--PA 57

Query: 128 LSEAIGDDSEAVV-CATGFQPGWDLFAPWKVDNF---------GTVNLVEACRK-RGVNR 176
           L EA+ +    VV        G          +F         GT NL+EA RK     R
Sbjct: 58  LIEALANGRPDVVFHLAAIVSGGA------EADFDLGYRVNVDGTRNLLEALRKNGPKPR 111

Query: 177 FILISSILVNGAAM--GQILNPAYIFLNVFGLTLIAKLQAE----QYIRKSGINYTIIRP 230
           F+  SS+ V G  +      + A    + +G     K   E     Y R+  ++   +R 
Sbjct: 112 FVFTSSLAVYGLPLPNPVTDHTALDPASSYGA---QKAMCELLLNDYSRRGFVDGRTLRL 168

Query: 231 GGLRNEPPTGNIIMETEVRAFI 252
             +   P   N          I
Sbjct: 169 PTVCVRPGRPNKAASAFASTII 190

Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187577 cd05267, SDR_a6, atypical (a) SDRs, subgroup 6

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 23/174 (13%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
           KK+ + GA G   +     LL      +   +R+   A   L   +  + +V+ D    S
Sbjct: 1   KKVLILGANGEIAREATTMLLENSNVELTLFLRN---AHRLLHLKSARVTVVEGDALN-S 56

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
             L  A+    + V    G   G DL      D     N+V+A +  GV R I  +S+ +
Sbjct: 57  DDLKAAM-RGQDVVYANLG---GTDL------DQQ-AENVVQAMKAVGVKRLIWTTSLGI 105

Query: 186 NG--AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEP 237
                      N         G  L    ++   I  S ++YT++RP  L N  
Sbjct: 106 YDEVPGKFGEWN-----KEFIGNYLAPYRKSAAVIENSDLDYTLLRPAWLTNND 154

These atypical SDR family members of unknown function have only a partial match to a prototypical glycine-rich NAD(P)-binding motif consensus, GXXG, which conserves part of the motif of extended SDR. Furthermore, they lack the characteristic active site residues of the SDRs. This subgroup is related to phenylcoumaran benzylic ether reductase, an NADPH-dependent aromatic alcohol reductase. One member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + + G  G  G+R+  QLLA+G+ V    R  +K           L    AD+T+     
Sbjct: 1   VLILGC-GYLGQRLARQLLAQGWQVTGTTRSPEKLAADRPAGVTPLA---ADLTQ----- 51

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNG 187
              +  D + +V +    P    +        G   L++A  +   V R I +SS  V G
Sbjct: 52  -PGLLADVDHLVISLP--PPAGSYRGGYDP--GLRALLDALAQLPAVQRVIYLSSTGVYG 106

Query: 188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG-INYTIIRPGGL 233
              G+ ++      N    +  A L+AEQ +   G    TI+R  G+
Sbjct: 107 DQQGEWVDETSP-PNPSTESGRALLEAEQALLALGSKPTTILRLAGI 152

Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251

>gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 27/189 (14%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKT----TLSKDNPSLQIVKADV 121
           K + V GA+G     IV+ LL +G+ VKA VRDL D+ KT     L      L++ KAD+
Sbjct: 6   KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADL 65

Query: 122 TEGSAKLSEAIGDD----SEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK-RGVNR 176
            E S+      G D    + + V  T   P  +L  P      GT+N++  C++   V R
Sbjct: 66  LEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALK---GTINVLNTCKETPSVKR 122

Query: 177 FILISS---ILVNGAAMG--QILNPAYI--------FLNVFGLT-LIAKLQAEQYIRKSG 222
            IL SS   +L     +    +++  +           N + L+ ++A+  A ++ + +G
Sbjct: 123 VILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNG 182

Query: 223 INYTIIRPG 231
           I+  ++ PG
Sbjct: 183 IDMVVLNPG 191

Length = 322

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 57/212 (26%), Positives = 79/212 (37%), Gaps = 52/212 (24%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPS----------LQIV 117
           KI V G  G  G   V QLL  G  V      LD     LS  +            +  V
Sbjct: 1   KILVTGGAGYIGSHTVRQLLESGHEVVI----LD----NLSNGSREALPRGERITPVTFV 52

Query: 118 KADVTEGSAKLSEAIGD-DSEAVVCATGFQP-GWDLFAPWKV-DN--FGTVNLVEACRKR 172
           + D+ +    L     +   +AV+   G    G  +  P K   N   GT+NL+EA ++ 
Sbjct: 53  EGDLRD-RELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQA 111

Query: 173 GVNRFILISSILVNGAAM------GQILNPAYIFLNVFGLTLIAKLQAEQYIR-----KS 221
           GV +FI  SS  V G            L P     N +G +   KL +EQ +R       
Sbjct: 112 GVKKFIFSSSAAVYGEPSSIPISEDSPLGPI----NPYGRS---KLMSEQILRDLQKADP 164

Query: 222 GINYTIIR--------PGGLRNE--PPTGNII 243
             +Y I+R        P G   E  P   ++I
Sbjct: 165 DWSYVILRYFNVAGAHPSGDIGEDPPGITHLI 196

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 45/191 (23%), Positives = 62/191 (32%), Gaps = 63/191 (32%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V G  GS G  +  Q+L         +    + +  L +    L+    D      KL
Sbjct: 1   VLVTGGGGSIGSELCRQILKFNPKK---IILFSRDEFKLYEIRQELRQEYND-----PKL 52

Query: 129 SEAIGD--DSEAVVCATGFQPGWDLFAPWKVD------------------------N-FG 161
              IGD  D E +                 VD                        N  G
Sbjct: 53  RFFIGDVRDRERLE---------RAMEQHGVDTVFHAAALKHVPLVEYNPMEAIKTNVLG 103

Query: 162 TVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI--- 218
           T N+ EA  + GV +F+LIS+   + A      NP     NV G T   K  AE+     
Sbjct: 104 TENVAEAAIENGVEKFVLIST---DKAV-----NPT----NVMGAT---KRLAEKLFQAA 148

Query: 219 -RKSGINYTII 228
            R+SG   T  
Sbjct: 149 NRESGSGKTRF 159

This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280

>gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 34/184 (18%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-------TLSKDNPSLQIV 117
           K K I V G  GS G  +V Q+L K    K  V D D+ K             +  L+ +
Sbjct: 1   KGKTILVTGGAGSIGSELVRQIL-KFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFI 59

Query: 118 KADVTEGSAKLSEAIGDDSEAVV---CATGFQPGWDL--FAPWKVDNFGTVNLVEACRKR 172
             DV +   +L  A  +    +V    A    P  +       K +  GT N+++A  + 
Sbjct: 60  IGDVRD-KERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIEN 118

Query: 173 GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-----RKSGINYTI 227
           GV +F+ IS+   + A      NP     NV G T   K  AE+ +       S   ++ 
Sbjct: 119 GVEKFVCIST---DKAV-----NPV----NVMGAT---KRVAEKLLLAKNEYSSSTKFST 163

Query: 228 IRPG 231
           +R G
Sbjct: 164 VRFG 167

UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287

>gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 36/174 (20%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KI + GATG  G+ +V  L  +G+ V               +   SL  +  D+T+  A 
Sbjct: 1   KILITGATGMLGRALVRLLKERGYEV-----------IGTGRSRASLFKL--DLTDPDA- 46

Query: 128 LSEAIGDDSEAVV--CATGFQPG---WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
           + EAI D    V+  CA   +      D    ++V+     NL  A ++ G  R I IS+
Sbjct: 47  VEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGA-RLIHIST 105

Query: 183 ILV-NGAAMGQILNPAY------IFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 229
             V +G          Y        LNV+G +   KL  E  +  +   Y I+R
Sbjct: 106 DYVFDGKK------GPYKEEDAPNPLNVYGKS---KLLGEVAVLNANPRYLILR 150

dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280

>gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 19/134 (14%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKD--NPSLQIV 117
           S + K + V GA+G     +V+ LL +G+ VKA VRD +  K T   L+ D     L + 
Sbjct: 1   SGEGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLF 60

Query: 118 KAD-VTEGSAKLSEAIGDDSEAVV-CATGF-----QPGWDLFAPWKVDNFGTVNLVEACR 170
           KA+ + EGS    +++ D  E V   A+ F      P  +L  P  V   GT+N++ +C 
Sbjct: 61  KANLLEEGSF---DSVVDGCEGVFHTASPFYHDVTDPQAELIDP-AVK--GTLNVLRSCA 114

Query: 171 K-RGVNRFILISSI 183
           K   V R ++ SS+
Sbjct: 115 KVPSVKRVVVTSSM 128

Length = 322

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 41/206 (19%)

Query: 73  GATGSSGKRIVEQLLAKGFAVK--AGVRDLDKA------KTTLSKDNPS--------LQI 116
           GATG  GK ++E+LL     VK    VR  D        +  L K            +  
Sbjct: 3   GATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERIIP 62

Query: 117 VKADVTEGSAKLSEA----IGDDSEAVV-CA--TGFQPGWDLFAPWKVDNFGTVNLVEAC 169
           V  D++E +  LS+     + ++ + ++  A    F            +  GT  ++   
Sbjct: 63  VAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFV--EPYSDLRATNVLGTREVLRLA 120

Query: 170 RKRGVNRFILISSILVNGAAMGQI-----------LNPAYIFLNVFGLTLIAKLQAEQYI 218
           ++     F  +S+  VNG   G +                   N +  +   K  AEQ +
Sbjct: 121 KQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQS---KWLAEQLV 177

Query: 219 RK--SGINYTIIRPGGLRNEPPTGNI 242
           R+   G+   I RP  +  E  TG I
Sbjct: 178 REAAGGLPVVIYRPSIITGESRTGWI 203

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 24/186 (12%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT---- 122
           K + + G +   G  +   L A+G+ V A  R+ DK ++     N +L++++ DVT    
Sbjct: 1   KVVLITGCSSGIGLALALALAAQGYRVIATARNPDKLESLGELLNDNLEVLELDVTDEES 60

Query: 123 -EGSAKLSEAIGDDSEAVVCATGF--------QPGWDLFAPWKVDNFGTVNLVEAC---- 169
            + + K         + +V   G+            ++   ++V+ FG + +  A     
Sbjct: 61  IKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVNVFGPLRVTRAFLPLM 120

Query: 170 RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK-LQAEQYIRKSGINYTII 228
           RK+G  R + +SS+      +       Y   +   L  +++ L+ E  +   GI  TII
Sbjct: 121 RKQGSGRIVNVSSV---AGLVPTPFLGPY-CASKAALEALSESLRLE--LAPFGIKVTII 174

Query: 229 RPGGLR 234
            PG +R
Sbjct: 175 EPGPVR 180

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V GATG  G R+V +LL +G  V+A VR  +  K      +  + +V+ D+ E    L
Sbjct: 1   VLVTGATGYVGGRLVPRLLQEGHQVRALVRSPE--KLADRPWSERVTVVRGDL-EDPESL 57

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
             A+     A         G D F   + D     N   A R  GV R I +  ++
Sbjct: 58  RAALEGIDTAYYLVHSMGSGGD-FE--EADRRAARNFARAARAAGVKRIIYLGGLI 110

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 41/189 (21%), Positives = 60/189 (31%), Gaps = 16/189 (8%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE 123
             K  VAGA G  G  ++  LL     F        +  A+   +     + +       
Sbjct: 53  DPKSLVAGAKGVDGVLLISGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADA 112

Query: 124 GS-AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACR-------KRGVN 175
            S + L+ A     EA + ++G  P   L         G    +EA          RG+ 
Sbjct: 113 ASPSALARAKAA-VEAALRSSGI-PYTTLRRAAFYLGAGAA-FIEAAEAAGLPVIPRGIG 169

Query: 176 RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRN 235
           R   I+   V  A    +  PA          L            SG++YTI RP GL  
Sbjct: 170 RLSPIAVDDVAEALAAALDAPAT---AGRTYELAGPEALTLAELASGLDYTIGRPVGLIP 226

Query: 236 EPPTGNIIM 244
           E      + 
Sbjct: 227 EALAALTLA 235

Length = 275

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 25/146 (17%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTE 123
           K   V GA+   G+ I  +L A G  V     + + A+     L       +++  DV++
Sbjct: 6   KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD 65

Query: 124 GSAKLSEAIGDDSEA-----VVCA----TGFQPGWDL-FAPWK--VD-NF-GTVNLVEAC 169
             A +   I    EA     ++      T       +    W   +D N  GT N+V A 
Sbjct: 66  -EAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAA 124

Query: 170 ----RKRGVNRFILISSILVNGAAMG 191
                K    R + ISS+       G
Sbjct: 125 LPPMIKARYGRIVNISSV---SGVTG 147

Length = 246

>gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKADVT-EG 124
           V GA+G  G  +V +LL +G+ V+A VRD    K       L      L + KAD+  EG
Sbjct: 10  VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEG 69

Query: 125 SAKLSEAIGDDSEAVVCAT--GFQ---PGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFI 178
           S    +AI   +     AT   F+   P  ++  P  V+  G +++++AC K   V R +
Sbjct: 70  S--FDDAIRGCTGVFHVATPMDFESKDPENEVIKP-TVN--GMLSIMKACAKAKTVRRIV 124

Query: 179 LISS 182
             SS
Sbjct: 125 FTSS 128

Length = 351

>gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 35/193 (18%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRD---LDKAKTTLSKDNPSLQIVKADVTEGS 125
           + + GA+   G+ +  +    G+ V    R    LD+ K  L   NPS+++   DVT+  
Sbjct: 1   VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAELLNPNPSVEVEILDVTDEE 60

Query: 126 ------AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGT--VNL----------VE 167
                 A+L   +G     ++ A   +        +K     T   NL          + 
Sbjct: 61  RNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFK-AFRETIDTNLLGAAAILEAALP 119

Query: 168 ACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKLQAEQYIRKSGI 223
             R +G    +LISS+    A  G     AY      L+    +L   +      +K GI
Sbjct: 120 QFRAKGRGHLVLISSVA---ALRGLPGAAAYSASKAALSSLAESLRYDV------KKRGI 170

Query: 224 NYTIIRPGGLRNE 236
             T+I PG +   
Sbjct: 171 RVTVINPGFIDTP 183

These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 35/157 (22%), Positives = 55/157 (35%), Gaps = 24/157 (15%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKA 119
            ++ +   V GA    G+ I  +L A G  V       D A  T   +       +  + 
Sbjct: 3   DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV 62

Query: 120 DVTEGSAKLSEAIGDDSEA-----VVCA----TGFQPGWDL-FAPWK----VDNFGTVNL 165
           DV +  A L  A+    E      ++ A        P  ++    W+    V+  GT  L
Sbjct: 63  DVRD-RAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLL 121

Query: 166 VEAC----RKRGVNRFILISSILVNGAAMGQILNPAY 198
            +A      + G  R +L SS  V G  +G      Y
Sbjct: 122 TQAALPALIRAGGGRIVLTSS--VAGPRVGYPGLAHY 156

Length = 251

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 50/193 (25%), Positives = 72/193 (37%), Gaps = 55/193 (28%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP-SLQIVKADVTEG- 124
            K+ V G  G  G   V QLL  G  V      LD     LS  +  +L  ++    EG 
Sbjct: 1   MKVLVTGGAGYIGSHTVRQLLKTGHEVVV----LD----NLSNGHKIALLKLQFKFYEGD 52

Query: 125 ---SAKLSEAIGDDS-EAVVCATGFQPGWDLFAPWKV------------DN--FGTVNLV 166
               A L+    ++  +AVV           FA                DN   GT+NL+
Sbjct: 53  LLDRALLTAVFEENKIDAVV----------HFAASISVGESVQNPLKYYDNNVVGTLNLI 102

Query: 167 EACRKRGVNRFILISSILVNGAAM------GQILNPAYIFLNVFGLTLIAKLQAEQYIR- 219
           EA  + GV +FI  S+  V G            L P    +N +G +   KL +E+ +R 
Sbjct: 103 EAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAP----INPYGRS---KLMSEEILRD 155

Query: 220 ---KSGINYTIIR 229
               +     I+R
Sbjct: 156 AAKANPFKVVILR 168

Length = 329

>gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 14/128 (10%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKAD- 120
           K + V GA+G     IV+ LL +G+ + A VRD    K T     L      L++ KAD 
Sbjct: 6   KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADL 65

Query: 121 VTEGSAKLS----EAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK-RGVN 175
           + EGS +L+    E +   +  V       P  +L  P  V+  GT+N++  C K   V 
Sbjct: 66  LDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINP-AVN--GTINVLRTCTKVSSVK 122

Query: 176 RFILISSI 183
           R IL SS+
Sbjct: 123 RVILTSSM 130

Length = 325

>gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--------KAKTTLSKDNPSLQIVK 118
            KI V GA G  G  + ++LL +G  V  G+ +L+        +A+  L   +   + VK
Sbjct: 1   MKILVTGAAGFIGFHVAKRLLERGDEV-VGIDNLNDYYDVRLKEARLELLGKSGGFKFVK 59

Query: 119 ADVTEGSAKLSEAIGDDSEAVVCATGFQPG--WDLFAPW---KVDNFGTVNLVEACRKRG 173
            D+ E    L     D     V     Q G  + L  P      +  G +NL+E CR  G
Sbjct: 60  GDL-EDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFG 118

Query: 174 VNRFILISSILVNGA 188
           V   +  SS  V G 
Sbjct: 119 VKHLVYASSSSVYGL 133

This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332

>gnl|CDD|187651 cd08947, NmrA_TMR_like_SDR_a, NmrA (a transcriptional regulator), HSCARG (an NADPH sensor), and triphenylmethane reductase (TMR) like proteins, atypical (a) SDRs

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 27/164 (16%)

Query: 69  IFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           I V GATG  G  ++  LLAKG   V+A VR+++KA T        +++ + D       
Sbjct: 1   IAVTGATGQQGGSVIRHLLAKGASQVRAVVRNVEKAATLAD---QGVEVRQGDY-NQPEL 56

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
           L +A    S+  +               K       N+ +A R+ GV     I S     
Sbjct: 57  LQKAFAGASKLFIITGPHYDNTLEIKQGK-------NVADAARRAGVKH---IYSTGYAF 106

Query: 188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
           A   +                  KL  E  IR +GI YT +R G
Sbjct: 107 A---EESAIPL---------AHVKLAVEYAIRTTGIPYTFLRNG 138

Atypical SDRs belonging to this subgroup include NmrA, HSCARG, and TMR, these proteins bind NAD(P) but they lack the usual catalytic residues of the SDRs. Atypical SDRs are distinct from classical SDRs. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. TMR, an NADP-binding protein, lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 224

>gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 64  VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKA 119
             +K   V G TG     +++ LL KG+AV   VRD +  K        ++   L+I  A
Sbjct: 7   TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGA 66

Query: 120 DVT-EGSAKLSEAIGDDSEAVVCATGFQ---PGWDLFAPWKVDNFGTVNLVEACRK-RGV 174
           D+T E S +   A  D    V     F    P  D+  P      G  N+++AC K + V
Sbjct: 67  DLTDEESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQ---GVHNVLKACAKAKSV 123

Query: 175 NRFILISS 182
            R IL SS
Sbjct: 124 KRVILTSS 131

Length = 338

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 36/171 (21%), Positives = 54/171 (31%), Gaps = 28/171 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAV------KAGVRDLDKAKTTLSKDNPSLQIVKAD 120
             + + G TG  G  +   L A+G         +       +    L      + +   D
Sbjct: 1   GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAEVTVAACD 60

Query: 121 VTEGSA--KLSEAIGDDSE---AVV-CATGFQPG---------WD-LFAPWKVDNFGTVN 164
           V +  A   L  A+         VV  A     G         ++ + AP KV   G  N
Sbjct: 61  VADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAP-KVT--GAWN 117

Query: 165 LVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE 215
           L E  R   +  F+L SS+      +G      Y   N     L    +AE
Sbjct: 118 LHELTRDLDLGAFVLFSSV---AGVLGSPGQANYAAANAALDALAEHRRAE 165

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 31/188 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD---LDKAKTTLSKDNPSLQIVKADVTE 123
           K   V  A+   G  I   L  +G  V    R+   L++A + L      +  V AD+T+
Sbjct: 2   KVALVTAASSGIGLAIARALAREGARVAICARNRENLERAASELRAGGAGVLAVVADLTD 61

Query: 124 GSA--KLSEAIGDDS---EAVVCATGFQPGWDLFAPWKVDNF---------GTVNLVEAC 169
                +L E  GD     + +V   G  P    FA    +++           + +V A 
Sbjct: 62  PEDIDRLVEKAGDAFGRVDILVNNAG-GPPPGPFAELTDEDWLEAFDLKLLSVIRIVRAV 120

Query: 170 ----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF--GLTLIAKLQAEQYIRKSGI 223
               ++RG  R + ISS+ V          P  +  NV   GL  + K  + +     G+
Sbjct: 121 LPGMKERGWGRIVNISSLTV-KEPE-----PNLVLSNVARAGLIGLVKTLSRELAPD-GV 173

Query: 224 NYTIIRPG 231
               + PG
Sbjct: 174 TVNSVLPG 181

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 27/103 (26%)

Query: 161 GTVNLVEACRKRGVNRFILISSILVNG-AAMGQI-----LNPAYIFLNVFGLTLIAKLQA 214
           GT+NL+EA R  GV  F+  SS  V G      I     LNP     N +G T   KL  
Sbjct: 99  GTLNLLEAMRAHGVKNFVFSSSAAVYGEPETVPITEEAPLNP----TNPYGRT---KLMV 151

Query: 215 EQYIR----KSGINYTIIR--------PGGLRNE--PPTGNII 243
           EQ +R      G+NY I+R        P GL  E      N+I
Sbjct: 152 EQILRDLAKAPGLNYVILRYFNPAGAHPSGLIGEDPQIPNNLI 194

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 25/153 (16%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAV----KAGVRDLDKAKTTLSKDNPSLQIVK 118
           S+  +   V GA    G+ I  +L   G  V    ++     ++    +       Q V+
Sbjct: 3   SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQ 62

Query: 119 ADVTEGSAKLSEAIGDDSEA------VVCATGFQPGWDLFAPWKVDNF---------GTV 163
           ADVT+ +A L  A+    E       +V   G        A    D +         G  
Sbjct: 63  ADVTDKAA-LEAAVAAAVERFGRIDILVNNAGIFE-DKPLADMSDDEWDEVIDVNLSGVF 120

Query: 164 NLVEAC----RKRGVNRFILISSILVNGAAMGQ 192
           +L+ A     RK+   R + ISS+       G+
Sbjct: 121 HLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGR 153

Length = 249

>gnl|CDD|219957 pfam08659, KR, KR domain

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 28/137 (20%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVK-------AGVRDLDKAKTT-LSKDNPSLQIVKADVT 122
           V G  G  G  +   L  +G A                +A    L      + +V  DV+
Sbjct: 5   VTGGLGGLGLELARWLAERG-ARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVACDVS 63

Query: 123 --EGSAKLSEAIGDDS---EAVV-CATGFQPG---------WD-LFAPWKVDNFGTVNLV 166
             +    L   I  D      V+  A   +           +  + AP KV   G  NL 
Sbjct: 64  DRDAVRALLAEIRADGPPLRGVIHAAGVLRDALLANMTAEDFARVLAP-KVT--GAWNLH 120

Query: 167 EACRKRGVNRFILISSI 183
           EA R R ++ F+L SSI
Sbjct: 121 EATRDRPLDFFVLFSSI 137

This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 37/191 (19%), Positives = 54/191 (28%), Gaps = 31/191 (16%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAV------KAGVRDLDKAKTTLSKDNPSLQIVK 118
             K   V GA+   G+ I   L  +G  V               A             V 
Sbjct: 4   SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVA 63

Query: 119 ADVT---EGSAKLSEAIGDDS---EAVVCATGFQPGWDLFAPWKVDNFG---TVNLV--- 166
           ADV+   E    L  A  ++    + +V   G             +++     VNL+   
Sbjct: 64  ADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAF 123

Query: 167 ----EACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV--FGLTLIAKLQAEQYIRK 220
                A       R + ISS+       G     AY         L  + K  A +    
Sbjct: 124 LLTRAALPLMKKQRIVNISSV---AGLGGPPGQAAY---AASKAALIGLTKALALEL-AP 176

Query: 221 SGINYTIIRPG 231
            GI    + PG
Sbjct: 177 RGIRVNAVAPG 187

Length = 251

>gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 70  FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           F+ GA+   G+ + E+LLA+G  V A VR  D      ++    L +++ DVT+ +A
Sbjct: 6   FITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAA 62

Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.96
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.96
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.96
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.96
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.95
PLN02214	342	cinnamoyl-CoA reductase	99.95
PLN02572	442	UDP-sulfoquinovose synthase	99.95
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.94
PLN02427	386	UDP-apiose/xylose synthase	99.94
PLN00198	338	anthocyanidin reductase; Provisional	99.94
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.94
PLN02650	351	dihydroflavonol-4-reductase	99.94
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.94
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.94
PLN03209	576	translocon at the inner envelope of chloroplast su	99.93
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.93
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.93
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.93
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.93
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.93
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.93
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.93
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.93
PLN02583	297	cinnamoyl-CoA reductase	99.92
PLN02686	367	cinnamoyl-CoA reductase	99.92
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.92
CHL00194	317	ycf39 Ycf39; Provisional	99.92
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.92
PLN02240	352	UDP-glucose 4-epimerase	99.92
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.92
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.92
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.92
PLN02206	442	UDP-glucuronate decarboxylase	99.92
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.92
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.92
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.92
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.91
PLN02653	340	GDP-mannose 4,6-dehydratase	99.91
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.91
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.91
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.91
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.9
PLN02260	668	probable rhamnose biosynthetic enzyme	99.9
PRK06196	315	oxidoreductase; Provisional	99.9
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.9
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.9
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.9
PRK06180	277	short chain dehydrogenase; Provisional	99.9
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.9
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.9
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.9
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.9
PRK06482	276	short chain dehydrogenase; Provisional	99.89
PRK06182	273	short chain dehydrogenase; Validated	99.89
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.89
PLN02996	491	fatty acyl-CoA reductase	99.89
PRK05993	277	short chain dehydrogenase; Provisional	99.89
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.89
PRK08263	275	short chain dehydrogenase; Provisional	99.89
PRK07201	657	short chain dehydrogenase; Provisional	99.89
PRK06179	270	short chain dehydrogenase; Provisional	99.89
PRK08339	263	short chain dehydrogenase; Provisional	99.88
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.88
PRK05717	255	oxidoreductase; Validated	99.88
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.88
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.88
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	99.88
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.88
PRK05854	313	short chain dehydrogenase; Provisional	99.88
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.88
PRK06197	306	short chain dehydrogenase; Provisional	99.88
PRK07063	260	short chain dehydrogenase; Provisional	99.88
PLN02253	280	xanthoxin dehydrogenase	99.88
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.88
PRK08265	261	short chain dehydrogenase; Provisional	99.88
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.88
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.88
PRK07825	273	short chain dehydrogenase; Provisional	99.88
PRK07024	257	short chain dehydrogenase; Provisional	99.87
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.87
PRK06128	300	oxidoreductase; Provisional	99.87
PRK05866	293	short chain dehydrogenase; Provisional	99.87
PRK06523	260	short chain dehydrogenase; Provisional	99.87
PRK05876	275	short chain dehydrogenase; Provisional	99.87
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.87
PRK07478	254	short chain dehydrogenase; Provisional	99.87
PRK06101	240	short chain dehydrogenase; Provisional	99.87
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.87
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.87
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.87
PRK07806	248	short chain dehydrogenase; Provisional	99.87
PRK07067	257	sorbitol dehydrogenase; Provisional	99.87
PRK06138	252	short chain dehydrogenase; Provisional	99.87
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
PLN00016	378	RNA-binding protein; Provisional	99.87
PRK06114	254	short chain dehydrogenase; Provisional	99.86
PRK10538	248	malonic semialdehyde reductase; Provisional	99.86
PRK08589	272	short chain dehydrogenase; Validated	99.86
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.86
PRK06398	258	aldose dehydrogenase; Validated	99.86
PRK07890	258	short chain dehydrogenase; Provisional	99.86
PRK07985	294	oxidoreductase; Provisional	99.86
PRK09291	257	short chain dehydrogenase; Provisional	99.86
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.86
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.86
PRK06914	280	short chain dehydrogenase; Provisional	99.86
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.86
PRK06194	287	hypothetical protein; Provisional	99.86
PRK07774	250	short chain dehydrogenase; Provisional	99.86
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.86
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.86
PRK06500	249	short chain dehydrogenase; Provisional	99.86
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.86
PRK08264	238	short chain dehydrogenase; Validated	99.86
PRK07454	241	short chain dehydrogenase; Provisional	99.86
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.86
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.86
PRK08267	260	short chain dehydrogenase; Provisional	99.86
PRK09186	256	flagellin modification protein A; Provisional	99.86
PRK12746	254	short chain dehydrogenase; Provisional	99.86
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.85
PRK06841	255	short chain dehydrogenase; Provisional	99.85
PRK07775	274	short chain dehydrogenase; Provisional	99.85
PLN02503	605	fatty acyl-CoA reductase 2	99.85
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.85
PRK07814	263	short chain dehydrogenase; Provisional	99.85
PRK12747	252	short chain dehydrogenase; Provisional	99.85
PRK06139	330	short chain dehydrogenase; Provisional	99.85
PRK08628	258	short chain dehydrogenase; Provisional	99.85
PRK05872	296	short chain dehydrogenase; Provisional	99.85
PRK08643	256	acetoin reductase; Validated	99.85
PRK05867	253	short chain dehydrogenase; Provisional	99.85
PRK07035	252	short chain dehydrogenase; Provisional	99.85
PRK05693	274	short chain dehydrogenase; Provisional	99.85
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.85
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK09242	257	tropinone reductase; Provisional	99.85
PRK07062	265	short chain dehydrogenase; Provisional	99.85
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.85
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.85
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.85
PRK05875	276	short chain dehydrogenase; Provisional	99.85
PRK07577	234	short chain dehydrogenase; Provisional	99.85
PRK05865	854	hypothetical protein; Provisional	99.85
PRK07856	252	short chain dehydrogenase; Provisional	99.85
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.85
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.85
PRK06181	263	short chain dehydrogenase; Provisional	99.85
PRK12742	237	oxidoreductase; Provisional	99.85
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.85
PRK06701	290	short chain dehydrogenase; Provisional	99.85
PRK07023	243	short chain dehydrogenase; Provisional	99.85
PRK06172	253	short chain dehydrogenase; Provisional	99.85
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.85
PRK07109	334	short chain dehydrogenase; Provisional	99.85
PRK08251	248	short chain dehydrogenase; Provisional	99.85
PRK07904	253	short chain dehydrogenase; Provisional	99.85
PLN02778	298	3,5-epimerase/4-reductase	99.85
PRK12827	249	short chain dehydrogenase; Provisional	99.84
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	99.84
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.84
PRK12828	239	short chain dehydrogenase; Provisional	99.84
PRK07060	245	short chain dehydrogenase; Provisional	99.84
PRK06949	258	short chain dehydrogenase; Provisional	99.84
PRK12829	264	short chain dehydrogenase; Provisional	99.84
PRK07102	243	short chain dehydrogenase; Provisional	99.84
PRK09135	249	pteridine reductase; Provisional	99.84
PRK07326	237	short chain dehydrogenase; Provisional	99.84
PRK06057	255	short chain dehydrogenase; Provisional	99.84
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.84
PRK05650	270	short chain dehydrogenase; Provisional	99.84
PRK12743	256	oxidoreductase; Provisional	99.84
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.84
PRK06484	520	short chain dehydrogenase; Validated	99.84
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.84
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.84
PRK08278	273	short chain dehydrogenase; Provisional	99.83
PRK09072	263	short chain dehydrogenase; Provisional	99.83
PRK08226	263	short chain dehydrogenase; Provisional	99.83
PRK12937	245	short chain dehydrogenase; Provisional	99.83
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.83
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.83
PLN02780	320	ketoreductase/ oxidoreductase	99.83
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.83
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.83
PRK12939	250	short chain dehydrogenase; Provisional	99.83
PRK07677	252	short chain dehydrogenase; Provisional	99.83
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.83
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.83
PRK06125	259	short chain dehydrogenase; Provisional	99.83
PRK05855	582	short chain dehydrogenase; Validated	99.83
PRK07576	264	short chain dehydrogenase; Provisional	99.83
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.83
PRK06483	236	dihydromonapterin reductase; Provisional	99.83
PRK09134	258	short chain dehydrogenase; Provisional	99.83
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.83
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.83
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.82
PRK07201	657	short chain dehydrogenase; Provisional	99.82
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.82
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.82
PRK08177	225	short chain dehydrogenase; Provisional	99.82
PRK07074	257	short chain dehydrogenase; Provisional	99.82
PRK08703	239	short chain dehydrogenase; Provisional	99.82
PRK07791	286	short chain dehydrogenase; Provisional	99.82
PRK06953	222	short chain dehydrogenase; Provisional	99.82
PRK07831	262	short chain dehydrogenase; Provisional	99.82
PRK05884	223	short chain dehydrogenase; Provisional	99.82
PRK08303	305	short chain dehydrogenase; Provisional	99.82
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.82
PRK08219	227	short chain dehydrogenase; Provisional	99.82
PRK06123	248	short chain dehydrogenase; Provisional	99.82
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.82
PRK06924	251	short chain dehydrogenase; Provisional	99.81
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.81
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.81
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.81
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.81
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.81
PRK06940	275	short chain dehydrogenase; Provisional	99.81
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.81
PRK07041	230	short chain dehydrogenase; Provisional	99.81
PRK12744	257	short chain dehydrogenase; Provisional	99.81
PRK08017	256	oxidoreductase; Provisional	99.81
PRK06484	520	short chain dehydrogenase; Validated	99.81
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.81
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.81
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.81
PRK07069	251	short chain dehydrogenase; Validated	99.81
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.81
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.81
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.81
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.81
KOG0725	270	consensus Reductases with broad range of substrate	99.81
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.81
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.81
KOG1208	314	consensus Dehydrogenases with different specificit	99.8
PRK07832	272	short chain dehydrogenase; Provisional	99.8
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.8
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.8
PRK08862	227	short chain dehydrogenase; Provisional	99.8
PRK06198	260	short chain dehydrogenase; Provisional	99.8
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.8
PRK12367	245	short chain dehydrogenase; Provisional	99.8
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.79
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.79
PRK08324	681	short chain dehydrogenase; Validated	99.79
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.78
PRK05599	246	hypothetical protein; Provisional	99.78
PLN02260	668	probable rhamnose biosynthetic enzyme	99.78
PRK12320	699	hypothetical protein; Provisional	99.78
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.78
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	99.77
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.77
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.77
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.77
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.77
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.77
PLN00015	308	protochlorophyllide reductase	99.76
PRK07578	199	short chain dehydrogenase; Provisional	99.76
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.76
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.76
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.76
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.76
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.76
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.74
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.74
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.74
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	99.74
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.74
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.73
COG2910	211	Putative NADH-flavin reductase [General function p	99.73
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.72
COG1028	251	FabG Dehydrogenases with different specificities (	99.71
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.7
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.66
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.66
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.65
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.65
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.64
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	99.63
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.63
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	99.63
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.62
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.61
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.58
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	99.56
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.54
KOG2774	366	consensus NAD dependent epimerase [General functio	99.45
PRK06720	169	hypothetical protein; Provisional	99.43
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.4
KOG4288	283	consensus Predicted oxidoreductase [General functi	99.38
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.33
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	99.33
PRK08309	177	short chain dehydrogenase; Provisional	99.23
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	99.15
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	99.07
PTZ00325	321	malate dehydrogenase; Provisional	99.05
PLN00106	323	malate dehydrogenase	98.89
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	98.89
PRK09620	229	hypothetical protein; Provisional	98.83
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.81
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.8
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.78
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.73
PRK05086	312	malate dehydrogenase; Provisional	98.66
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.66
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	98.56
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.45
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.44
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.35
PRK14982	340	acyl-ACP reductase; Provisional	98.34
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.34
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.29
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.29
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	98.26
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.2
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.13
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.12
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	98.06
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	98.04
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.03
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.99
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.98
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.98
COG3268	382	Uncharacterized conserved protein [Function unknow	97.95
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.92
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.9
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.85
PRK09496	453	trkA potassium transporter peripheral membrane com	97.84
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.83
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.76
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.75
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.73
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.71
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.71
PRK05442	326	malate dehydrogenase; Provisional	97.7
PRK09496	453	trkA potassium transporter peripheral membrane com	97.69
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.69
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	97.67
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.67
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.64
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.64
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.62
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.61
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.61
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.59
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.56
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.56
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.54
PRK08223	287	hypothetical protein; Validated	97.53
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.53
PRK08328	231	hypothetical protein; Provisional	97.51
PRK15116	268	sulfur acceptor protein CsdL; Provisional	97.5
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.5
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.49
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.49
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.45
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.45
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	97.45
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.45
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.43
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.43
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.4
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.39
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	97.39
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	97.39
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	97.38
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.38
COG4982	866	3-oxoacyl-[acyl-carrier protein]	97.37
PRK04148	134	hypothetical protein; Provisional	97.37
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.36
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	97.35
PTZ00117	319	malate dehydrogenase; Provisional	97.35
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	97.35
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.31
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	97.3
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.3
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.3
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.3
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	97.29
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	97.29
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.28
PRK06223	307	malate dehydrogenase; Reviewed	97.28
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.28
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	97.27
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.27
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.26
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.25
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.24
KOG3019	315	consensus Predicted nucleoside-diphosphate sugar e	97.23
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.22
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.21
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.21
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.21
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.21
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.2
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.2
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.19
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.19
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.19
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.18
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.17
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.17
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	97.17
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.17
PRK10669	558	putative cation:proton antiport protein; Provision	97.14
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.14
PLN02383	344	aspartate semialdehyde dehydrogenase	97.13
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	97.12
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.11
PRK07411	390	hypothetical protein; Validated	97.11
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	97.1
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.08
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.06
PRK08655	437	prephenate dehydrogenase; Provisional	97.04
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.03
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	97.03
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.03
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.02
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.02
PLN02602	350	lactate dehydrogenase	97.01
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.01
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.0
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.99
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	96.96
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.95
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.94
PRK14852	989	hypothetical protein; Provisional	96.91
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.89
PRK14851	679	hypothetical protein; Provisional	96.88
PLN00203	519	glutamyl-tRNA reductase	96.88
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.87
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.86
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	96.85
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.84
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.83
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.83
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	96.82
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.82
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.8
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.8
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	96.8
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.79
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.78
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	96.78
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.77
PRK07877	722	hypothetical protein; Provisional	96.76
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.75
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.74
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.73
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.73
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	96.71
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	96.71
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.7
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.7
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.66
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.64
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.63
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	96.62
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.61
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.59
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.59
PRK06849	389	hypothetical protein; Provisional	96.57
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.56
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.55
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	96.55
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	96.54
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	96.54
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.54
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.53
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.53
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.51
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.5
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.47
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.47
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.44
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	96.44
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	96.44
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.44
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	96.44
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.43
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	96.42
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.4
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	96.4
COG2130	340	Putative NADP-dependent oxidoreductases [General f	96.37
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.35
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.34
PRK06153	393	hypothetical protein; Provisional	96.34
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	96.34
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.33
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	96.33
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.32
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.3
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.28
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.26
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.25

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=3.2e-29  Score=205.74  Aligned_cols=172  Identities=24%  Similarity=0.293  Sum_probs=144.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      ++||||||+|+||+|.+.+|++.|++|++++.-...-.+.+.  ....+++++|+.| .+.+.+.|.. ++|+|||+||.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~--~~~~~f~~gDi~D-~~~L~~vf~~~~idaViHFAa~   77 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALL--KLQFKFYEGDLLD-RALLTAVFEENKIDAVVHFAAS   77 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhh--hccCceEEecccc-HHHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999999999999998875443332221  0116899999999 8889999976 79999999986


Q ss_pred             CC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH-
Q 025456          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-  220 (252)
Q Consensus       146 ~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-  220 (252)
                      ..    -.++.++++.|+.||.+|+++|+++++++|||.||+.+||.+...|..|+ .+..+.++|+++|.+.|++++. 
T Consensus        78 ~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~-~~~~p~NPYG~sKlm~E~iL~d~  156 (329)
T COG1087          78 ISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET-SPLAPINPYGRSKLMSEEILRDA  156 (329)
T ss_pred             cccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC-CCCCCCCcchhHHHHHHHHHHHH
Confidence            54    24677889999999999999999999999999999999999877666654 3556889999999999998864 


Q ss_pred             ---cCCcEEEEeCCcccCCCCCCce
Q 025456          221 ---SGINYTIIRPGGLRNEPPTGNI  242 (252)
Q Consensus       221 ---~gi~~~~lrPg~i~~~~~~~~~  242 (252)
                         ++++++++|-.++.|....|.+
T Consensus       157 ~~a~~~~~v~LRYFN~aGA~~~G~i  181 (329)
T COG1087         157 AKANPFKVVILRYFNVAGACPDGTL  181 (329)
T ss_pred             HHhCCCcEEEEEecccccCCCCCcc
Confidence               6899999999999998766554

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.96  E-value=3.3e-28  Score=212.09  Aligned_cols=173  Identities=16%  Similarity=0.111  Sum_probs=138.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc----c---c-CCCCeEEEEeeCCCChHHHHHHHcC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----S---K-DNPSLQIVKADVTEGSAKLSEAIGD  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~---~-~~~~~~~i~~Dl~d~~~~~~~~~~~  134 (252)
                      .+++|+|+||||+||||++|+++|+++|++|++++|........+    .   . ...++.++.+|++| .+.+.+++.+
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d-~~~l~~~~~~   90 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK-FTDCQKACKN   90 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC-HHHHHHHhhC
Confidence            346799999999999999999999999999999998643211111    0   0 11358899999999 7888999998


Q ss_pred             CCcEEEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHH
Q 025456          135 DSEAVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       135 ~~d~vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~s  210 (252)
                       +|+|||+|+...    ..++...+++|+.|+.+++++|++.++++|||+||..+||...+.+..+. .+.++.+.|+.+
T Consensus        91 -~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-~~~~p~~~Y~~s  168 (348)
T PRK15181         91 -VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-RIGRPLSPYAVT  168 (348)
T ss_pred             -CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC-CCCCCCChhhHH
Confidence             999999998643    23455678999999999999999999999999999999986544333332 234566789999


Q ss_pred             HHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          211 KLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       211 K~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      |.++|.+++    +++++++++||++++|+..
T Consensus       169 K~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~  200 (348)
T PRK15181        169 KYVNELYADVFARSYEFNAIGLRYFNVFGRRQ  200 (348)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence            999998764    3589999999999999864

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.96  E-value=2.4e-28  Score=206.41  Aligned_cols=167  Identities=26%  Similarity=0.333  Sum_probs=130.6

Q ss_pred             EEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCCC
Q 025456           70 FVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQP  147 (252)
Q Consensus        70 lVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~  147 (252)
                      |||||+||||++|+++|+++|  ++|+++++.+..............+++++|++| .+++.+++++ +|+|||+|+...
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d-~~~l~~a~~g-~d~V~H~Aa~~~   78 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITD-PESLEEALEG-VDVVFHTAAPVP   78 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEecccc-HHHHHHHhcC-CceEEEeCcccc
Confidence            699999999999999999999  789999887654321111122334499999999 8999999999 999999998654


Q ss_pred             CC---CCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCC-CCCC---Ccch-hccchhhHHHHHHHHHHHHHH
Q 025456          148 GW---DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-GQIL---NPAY-IFLNVFGLTLIAKLQAEQYIR  219 (252)
Q Consensus       148 ~~---~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~-~~~~---~~~~-~~~~~~~~y~~sK~~~e~~~~  219 (252)
                      ..   ..+.++++|+.||++++++|++.++++|||+||..+++... +.+.   ++.. .+..+...|+.+|+.+|+++.
T Consensus        79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~AE~~V~  158 (280)
T PF01073_consen   79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKALAEKAVL  158 (280)
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHHHHHHHH
Confidence            32   35567899999999999999999999999999999987521 1111   1211 123456789999999999875


Q ss_pred             H-c--------CCcEEEEeCCcccCCCC
Q 025456          220 K-S--------GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       220 ~-~--------gi~~~~lrPg~i~~~~~  238 (252)
                      + .        .+.+++|||..|+|+..
T Consensus       159 ~a~~~~~~~g~~l~t~~lRP~~IyGp~d  186 (280)
T PF01073_consen  159 EANGSELKNGGRLRTCALRPAGIYGPGD  186 (280)
T ss_pred             hhcccccccccceeEEEEeccEEeCccc
Confidence            4 2        28999999999999864

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.96  E-value=6.3e-27  Score=195.15  Aligned_cols=182  Identities=82%  Similarity=1.271  Sum_probs=145.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHH-cCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-GDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~-~~~~d~vi~~  142 (252)
                      .++++|+||||+|+||++++++|+++|++|+++.|++++...... ...+++++++|++|..+++.+.+ .+ +|+||++
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~l~~~~~~~-~d~vi~~   92 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP-QDPSLQIVRADVTEGSDKLVEAIGDD-SDAVICA   92 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc-cCCceEEEEeeCCCCHHHHHHHhhcC-CCEEEEC
Confidence            457999999999999999999999999999999999876554333 23468999999998335677777 57 9999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcC
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG  222 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~g  222 (252)
                      +|.....+....+++|..++.++++++++.++++||++||.++|+...+.+..+.+...+++..|...|..+|+++++.|
T Consensus        93 ~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~g  172 (251)
T PLN00141         93 TGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRKSG  172 (251)
T ss_pred             CCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98754334445578999999999999999999999999999998765444444444444556667788999999999999


Q ss_pred             CcEEEEeCCcccCCCCCCceEeecc
Q 025456          223 INYTIIRPGGLRNEPPTGNIIMETE  247 (252)
Q Consensus       223 i~~~~lrPg~i~~~~~~~~~~~~~~  247 (252)
                      +++++||||+++++...+.+...+.
T Consensus       173 i~~~iirpg~~~~~~~~~~~~~~~~  197 (251)
T PLN00141        173 INYTIVRPGGLTNDPPTGNIVMEPE  197 (251)
T ss_pred             CcEEEEECCCccCCCCCceEEECCC
Confidence            9999999999998876655554433

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.95  E-value=5.5e-27  Score=197.03  Aligned_cols=174  Identities=25%  Similarity=0.290  Sum_probs=137.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh-----ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-----TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      .+++|+|||||||||+||+++|+++||.|++++|+++..+.     .+++..++++.+.+||+| .+++++++.+ +|+|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d-~~sf~~ai~g-cdgV   82 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLD-EGSFDKAIDG-CDGV   82 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccc-cchHHHHHhC-CCEE
Confidence            47999999999999999999999999999999999987432     223345679999999999 8999999999 9999


Q ss_pred             EEcCCCCCCCC--CC-CcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccC---C--CCCCCcch-hc----cchhh
Q 025456          140 VCATGFQPGWD--LF-APWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAA---M--GQILNPAY-IF----LNVFG  205 (252)
Q Consensus       140 i~~ag~~~~~~--~~-~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~---~--~~~~~~~~-~~----~~~~~  205 (252)
                      ||.|.+.....  ++ +.++.++.|+.|++++|++.. ++|+|++||..+-...   .  ....++.. ..    ..-..
T Consensus        83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~  162 (327)
T KOG1502|consen   83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKL  162 (327)
T ss_pred             EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHH
Confidence            99998765332  23 678999999999999999887 9999999998753221   1  11222221 11    11126


Q ss_pred             HHHHHHHHHHHH----HHHcCCcEEEEeCCcccCCCCCC
Q 025456          206 LTLIAKLQAEQY----IRKSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       206 ~y~~sK~~~e~~----~~~~gi~~~~lrPg~i~~~~~~~  240 (252)
                      +|..+|..+|+.    .++.+++.+.+-|+.|.||....
T Consensus       163 ~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~  201 (327)
T KOG1502|consen  163 WYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQP  201 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCccc
Confidence            899999998864    45678999999999999997543

>PLN02214 cinnamoyl-CoA reductase

Probab=99.95  E-value=9.7e-27  Score=202.40  Aligned_cols=172  Identities=24%  Similarity=0.289  Sum_probs=137.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh----ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ++++|+||||+||||++++++|+++|++|++++|+.+....    .+.....+++++.+|++| .+++.+++.+ +|+||
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~Vi   86 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQD-YEALKAAIDG-CDGVF   86 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCC-hHHHHHHHhc-CCEEE
Confidence            57899999999999999999999999999999998654211    111122468899999999 8889999998 99999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc-eeeccCCCC---CCCcch-----hccchhhHHHHHH
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI-LVNGAAMGQ---ILNPAY-----IFLNVFGLTLIAK  211 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~-~v~~~~~~~---~~~~~~-----~~~~~~~~y~~sK  211 (252)
                      |+|+... .++...+++|+.|+.+++++|++.++++||++||. .+|+.....   +.++..     .+.++...|+.+|
T Consensus        87 h~A~~~~-~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~sK  165 (342)
T PLN02214         87 HTASPVT-DDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGK  165 (342)
T ss_pred             EecCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHHHHH
Confidence            9998653 35567789999999999999999999999999996 578743221   233331     1334567899999


Q ss_pred             HHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          212 LQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       212 ~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .++|+++.    ++|++++++||++++|+...
T Consensus       166 ~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~  197 (342)
T PLN02214        166 MVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQ  197 (342)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCceECCCCC
Confidence            99998774    35999999999999998753

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.95  E-value=1.3e-26  Score=207.65  Aligned_cols=175  Identities=18%  Similarity=0.175  Sum_probs=132.1

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh--------------------hhccccCCCCeEEEEeeC
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA--------------------KTTLSKDNPSLQIVKADV  121 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~--------------------~~~~~~~~~~~~~i~~Dl  121 (252)
                      ...++|+|+||||+||||++|+++|+++|++|++++|.....                    +........+++++.+|+
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl  122 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI  122 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence            445789999999999999999999999999999987432100                    000000123689999999


Q ss_pred             CCChHHHHHHHcC-CCcEEEEcCCCCCC----CC---CCCcceehHHHHHHHHHHHHhcCCC-EEEEEccceeeccCCCC
Q 025456          122 TEGSAKLSEAIGD-DSEAVVCATGFQPG----WD---LFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQ  192 (252)
Q Consensus       122 ~d~~~~~~~~~~~-~~d~vi~~ag~~~~----~~---~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~SS~~v~~~~~~~  192 (252)
                      +| .+.+.+++.+ ++|+|||+|+....    .+   +...+++|+.|+.+++++|++.+++ +||++||..+||.... 
T Consensus       123 ~d-~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~-  200 (442)
T PLN02572        123 CD-FEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNI-  200 (442)
T ss_pred             CC-HHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCC-
Confidence            99 8889988874 48999999975321    11   2234679999999999999999885 8999999999986421 


Q ss_pred             CCCc-----------ch--hccchhhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          193 ILNP-----------AY--IFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       193 ~~~~-----------~~--~~~~~~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      +.++           +.  .+.++.+.|+.+|.++|.+++    .+|++++++||+++||+..
T Consensus       201 ~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~  263 (442)
T PLN02572        201 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT  263 (442)
T ss_pred             CCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence            1111           11  244566789999999998764    4599999999999999874

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.94  E-value=3.5e-26  Score=199.24  Aligned_cols=169  Identities=15%  Similarity=0.232  Sum_probs=134.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ||+|+||||+||||++|+++|+++ |++|++++|+.+.......  ..+++++.+|++++.+.+.+++.+ +|+|||+|+
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~-~d~ViH~aa   77 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVN--HPRMHFFEGDITINKEWIEYHVKK-CDVILPLVA   77 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhcc--CCCeEEEeCCCCCCHHHHHHHHcC-CCEEEECcc
Confidence            468999999999999999999986 7999999987654333322  246899999998426777788888 999999998


Q ss_pred             CCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhc------cchhhHHHHHHHHH
Q 025456          145 FQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF------LNVFGLTLIAKLQA  214 (252)
Q Consensus       145 ~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~------~~~~~~y~~sK~~~  214 (252)
                      ...    ..++...+++|+.++.+++++|++.+ ++|||+||..+||...+.+..++..+      .++.+.|+.+|.++
T Consensus        78 ~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~  156 (347)
T PRK11908         78 IATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLM  156 (347)
T ss_pred             cCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHHH
Confidence            643    24556678999999999999999988 69999999999986544333333221      24556899999999


Q ss_pred             HHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          215 EQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       215 e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      |++++    +++++++++||++++|+..
T Consensus       157 e~~~~~~~~~~~~~~~ilR~~~v~Gp~~  184 (347)
T PRK11908        157 DRVIWAYGMEEGLNFTLFRPFNWIGPGL  184 (347)
T ss_pred             HHHHHHHHHHcCCCeEEEeeeeeeCCCc
Confidence            98775    3689999999999999864

>PLN02427 UDP-apiose/xylose synthase

Probab=99.94  E-value=5e-26  Score=201.03  Aligned_cols=171  Identities=20%  Similarity=0.203  Sum_probs=132.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      +.|+|+||||+||||++|+++|+++ |++|++++|+.+........    ...+++++.+|++| .+.+.+++.+ +|+|
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~-~d~V   90 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKH-DSRLEGLIKM-ADLT   90 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCC-hHHHHHHhhc-CCEE
Confidence            4679999999999999999999998 59999999876554332211    12469999999999 7889999998 9999


Q ss_pred             EEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcch---------------hc
Q 025456          140 VCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY---------------IF  200 (252)
Q Consensus       140 i~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~---------------~~  200 (252)
                      ||+|+....    .++.+.+..|+.++.+++++|++.+ ++|||+||..+||...+.+..+..               .+
T Consensus        91 iHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~~  169 (386)
T PLN02427         91 INLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESP  169 (386)
T ss_pred             EEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCcccccccccccccccccccc
Confidence            999986432    2233456789999999999999887 799999999999864322111100               00


Q ss_pred             ------cchhhHHHHHHHHHHHHHHH----cCCcEEEEeCCcccCCCC
Q 025456          201 ------LNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ------~~~~~~y~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~  238 (252)
                            .++.+.|+.+|.++|+++..    ++++++++||++++|+..
T Consensus       170 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  217 (386)
T PLN02427        170 CIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRM  217 (386)
T ss_pred             cccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCC
Confidence                  12335799999999988753    589999999999999864

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.94  E-value=1.3e-25  Score=194.91  Aligned_cols=172  Identities=25%  Similarity=0.241  Sum_probs=132.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh-----ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-----TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      +++++|+||||+||||++|+++|+++|++|++++|+.+....     .+. ...+++++.+|++| .+++.+.+.+ +|+
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~   83 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQ-ELGDLKIFGADLTD-EESFEAPIAG-CDL   83 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcC-CCCceEEEEcCCCC-hHHHHHHHhc-CCE
Confidence            457999999999999999999999999999988887643221     111 11368899999999 7889999988 999


Q ss_pred             EEEcCCCCCCC--CC-CCcceehHHHHHHHHHHHHhc-CCCEEEEEccceeeccCC----CCCCCcch--------hccc
Q 025456          139 VVCATGFQPGW--DL-FAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAM----GQILNPAY--------IFLN  202 (252)
Q Consensus       139 vi~~ag~~~~~--~~-~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~~~~~----~~~~~~~~--------~~~~  202 (252)
                      |||+|+.....  ++ ...+++|+.|+.++++++++. ++++||++||..+|+...    +.+.++..        ....
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (338)
T PLN00198         84 VFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKP  163 (338)
T ss_pred             EEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCC
Confidence            99999854321  22 234689999999999999876 578999999999997431    11222211        1223


Q ss_pred             hhhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      +...|+.+|.++|.+++    +++++++++||++++|+..
T Consensus       164 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~  203 (338)
T PLN00198        164 PTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSL  203 (338)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCc
Confidence            56779999999997664    4699999999999999964

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.94  E-value=5.4e-26  Score=198.23  Aligned_cols=172  Identities=24%  Similarity=0.191  Sum_probs=134.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc--cCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~  141 (252)
                      ++|+|+||||+||||+++++.|+++|++|++++|+.........  ....++.++.+|++| .+++.+.+.+ ++|+|||
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD-AAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCC-HHHHHHHHhhcCCCEEEE
Confidence            47999999999999999999999999999999987654322111  112357789999999 8888888875 4799999


Q ss_pred             cCCCCC----CCCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCC-CCCCcchhccchhhHHHHHHHHHH
Q 025456          142 ATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMG-QILNPAYIFLNVFGLTLIAKLQAE  215 (252)
Q Consensus       142 ~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~-~~~~~~~~~~~~~~~y~~sK~~~e  215 (252)
                      +|+...    ..++...+++|+.++.+++++|++.+ +++||++||..+|+.... .+..+ ..+.++.+.|+.+|.++|
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e-~~~~~p~~~Y~~sK~~~e  160 (349)
T TIGR02622        82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRE-TDPLGGHDPYSSSKACAE  160 (349)
T ss_pred             CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCcc-CCCCCCCCcchhHHHHHH
Confidence            998532    23455678999999999999998876 789999999999975422 12222 223456778999999999


Q ss_pred             HHHHH-----------cCCcEEEEeCCcccCCCC
Q 025456          216 QYIRK-----------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       216 ~~~~~-----------~gi~~~~lrPg~i~~~~~  238 (252)
                      .+++.           .+++++++||++++|+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~  194 (349)
T TIGR02622       161 LVIASYRSSFFGVANFHGIKIASARAGNVIGGGD  194 (349)
T ss_pred             HHHHHHHHHhhcccccCCCcEEEEccCcccCCCc
Confidence            87753           289999999999999853

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02650 dihydroflavonol-4-reductase

Probab=99.94  E-value=2.1e-25  Score=194.65  Aligned_cols=172  Identities=23%  Similarity=0.254  Sum_probs=132.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---cc--cCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      +.++||||||+||||++++++|+++|++|++++|+.+.....   ..  ....+++++.+|++| .+.+.+++.+ +|+|
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d-~~~~~~~~~~-~d~V   81 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAV-EGSFDDAIRG-CTGV   81 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCC-hhhHHHHHhC-CCEE
Confidence            468999999999999999999999999999999986543321   11  112358899999999 7889999998 9999


Q ss_pred             EEcCCCCCC--CCC-CCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCC-CC-CCcch--------hccchhh
Q 025456          140 VCATGFQPG--WDL-FAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMG-QI-LNPAY--------IFLNVFG  205 (252)
Q Consensus       140 i~~ag~~~~--~~~-~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~-~~-~~~~~--------~~~~~~~  205 (252)
                      ||+|+....  .++ ...+++|+.|+.+++++|++.+ +++|||+||.++|+.... .+ ..+..        .+..+.+
T Consensus        82 iH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  161 (351)
T PLN02650         82 FHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW  161 (351)
T ss_pred             EEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence            999986432  122 3578999999999999999876 789999999977654221 11 12221        1112345


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|.++|.+++    ++|++++++||++++|+..
T Consensus       162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~  198 (351)
T PLN02650        162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI  198 (351)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence            79999999998764    4699999999999999864

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.94  E-value=7e-26  Score=193.53  Aligned_cols=154  Identities=14%  Similarity=0.068  Sum_probs=127.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      |+||||||+||||++++++|+++| +|++++|...              .+.+|++| .+.+.+++.+ ++|+|||+|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~--------------~~~~Dl~d-~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST--------------DYCGDFSN-PEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc--------------cccCCCCC-HHHHHHHHHhcCCCEEEECCcc
Confidence            479999999999999999999999 7988877531              23589999 8889888874 48999999987


Q ss_pred             CCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc
Q 025456          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (252)
Q Consensus       146 ~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (252)
                      ...    .+++..+++|+.++.+++++|++.++ +|||+||..+|+.....+..|.. +.+|.+.|+.+|.++|++++.+
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~p~~E~~-~~~P~~~Yg~sK~~~E~~~~~~  142 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTGDIPWQETD-ATAPLNVYGETKLAGEKALQEH  142 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCCCCCcCCCC-CCCCCCHHHHHHHHHHHHHHHh
Confidence            542    23344568999999999999999996 89999999999876544554433 4567788999999999999887


Q ss_pred             CCcEEEEeCCcccCCCC
Q 025456          222 GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~~  238 (252)
                      ..+++++||+++||+..
T Consensus       143 ~~~~~ilR~~~vyGp~~  159 (299)
T PRK09987        143 CAKHLIFRTSWVYAGKG  159 (299)
T ss_pred             CCCEEEEecceecCCCC
Confidence            78899999999999854

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.94  E-value=2.6e-25  Score=191.57  Aligned_cols=171  Identities=24%  Similarity=0.321  Sum_probs=131.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh---hcc--ccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---TTL--SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~--~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ++++|+||||+||||++|+++|+++|++|++++|+.....   ...  .....+++++++|++| .+.+.+++.+ +|+|
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~-~d~V   80 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLE-EGSFDSVVDG-CEGV   80 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccC-cchHHHHHcC-CCEE
Confidence            3689999999999999999999999999999998765321   111  1112478999999999 7889999998 9999


Q ss_pred             EEcCCCCCC--CCCC-CcceehHHHHHHHHHHHHhc-CCCEEEEEccce--eeccCC---CCCCCcchhccch------h
Q 025456          140 VCATGFQPG--WDLF-APWKVDNFGTVNLVEACRKR-GVNRFILISSIL--VNGAAM---GQILNPAYIFLNV------F  204 (252)
Q Consensus       140 i~~ag~~~~--~~~~-~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~--v~~~~~---~~~~~~~~~~~~~------~  204 (252)
                      ||+|+....  .++. ..+++|+.|+.+++++|++. ++++||++||.+  +|+...   +.+.++.. +.++      .
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~-~~~p~~~~~~~  159 (322)
T PLN02662         81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETW-FSDPAFCEESK  159 (322)
T ss_pred             EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCccc-CCChhHhhccc
Confidence            999986432  2232 56789999999999999887 889999999976  465321   11223322 1122      2


Q ss_pred             hHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          205 GLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..|+.+|..+|++++    +.+++++++||++++|+..
T Consensus       160 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~  197 (322)
T PLN02662        160 LWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLL  197 (322)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCC
Confidence            579999999998764    4699999999999999864

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.93  E-value=7.9e-25  Score=197.29  Aligned_cols=170  Identities=36%  Similarity=0.584  Sum_probs=135.3

Q ss_pred             hcccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc------------CCCCeEEEEeeCCCChHH
Q 025456           60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------------DNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        60 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~------------~~~~~~~i~~Dl~d~~~~  127 (252)
                      ....+++++|+||||+|+||++++++|+++|++|++++|+.++.......            ...+++++.+|++| .++
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD-~es  152 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK-PDQ  152 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC-HHH
Confidence            34445789999999999999999999999999999999998765432210            11358899999999 888


Q ss_pred             HHHHHcCCCcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          128 LSEAIGDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       128 ~~~~~~~~~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +.+++++ +|+||||+|....  .++...+++|+.|+.+++++|++.++++||++||.+++...  .+. .   ..+...
T Consensus       153 I~~aLgg-iDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g--~p~-~---~~~sk~  225 (576)
T PLN03209        153 IGPALGN-ASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVG--FPA-A---ILNLFW  225 (576)
T ss_pred             HHHHhcC-CCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccC--ccc-c---chhhHH
Confidence            9999998 9999999986532  24455678999999999999999999999999998653111  110 0   123456


Q ss_pred             HHHHHHHHHHHHHHHcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIRKSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~~~gi~~~~lrPg~i~~~~  237 (252)
                      .|...|..+|+++.+.|++|++||||++.++.
T Consensus       226 ~~~~~KraaE~~L~~sGIrvTIVRPG~L~tp~  257 (576)
T PLN03209        226 GVLCWKRKAEEALIASGLPYTIVRPGGMERPT  257 (576)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEECCeecCCc
Confidence            67788999999999999999999999998764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.93  E-value=4.3e-25  Score=193.94  Aligned_cols=169  Identities=18%  Similarity=0.123  Sum_probs=132.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ++|+|+||||+||||+++++.|+++|++|++++|.....   ........+++.+|++| .+.+.+++.+ +|+|||+|+
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~---~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~D~Vih~Aa   94 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEH---MSEDMFCHEFHLVDLRV-MENCLKVTKG-VDHVFNLAA   94 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccc---cccccccceEEECCCCC-HHHHHHHHhC-CCEEEEccc
Confidence            578999999999999999999999999999999864321   11111235788899999 7888888888 999999997


Q ss_pred             CCC-----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCC----CCCcch-hccchhhHHHHHHHHH
Q 025456          145 FQP-----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ----ILNPAY-IFLNVFGLTLIAKLQA  214 (252)
Q Consensus       145 ~~~-----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~----~~~~~~-~~~~~~~~y~~sK~~~  214 (252)
                      ...     ..++...+..|+.++.+++++|++.++++|||+||..+|+.....    +..+.. .+..+.+.|+.+|.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~~~  174 (370)
T PLN02695         95 DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLAT  174 (370)
T ss_pred             ccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHHHHHH
Confidence            532     123344567899999999999999999999999999999864321    122222 2456678899999999


Q ss_pred             HHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          215 EQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       215 e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      |++++    ++|++++++||+++||+..
T Consensus       175 E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        175 EELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            98764    4699999999999999864

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.93  E-value=4.1e-25  Score=190.76  Aligned_cols=172  Identities=26%  Similarity=0.327  Sum_probs=132.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh---ccc--cCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ++|+|+||||+||||++++++|+++|++|++++|+......   ...  ....+++++.+|++| .+++.+++.+ +|+|
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~-~d~v   81 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLD-EGSFELAIDG-CETV   81 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCC-chHHHHHHcC-CCEE
Confidence            37899999999999999999999999999998888654321   111  112468899999999 7889999988 9999


Q ss_pred             EEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceeeccCC-----CCCCCcchhccch------
Q 025456          140 VCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAM-----GQILNPAYIFLNV------  203 (252)
Q Consensus       140 i~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~~~~~-----~~~~~~~~~~~~~------  203 (252)
                      |||||....    .++...+++|+.|+.+++++|.+. +.++||++||..+|+...     ..+.+|.. +.++      
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~-~~~p~~~~~~  160 (325)
T PLN02989         82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETF-FTNPSFAEER  160 (325)
T ss_pred             EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCC-CCchhHhccc
Confidence            999986431    234456789999999999999875 568999999988765421     11223322 2222      


Q ss_pred             hhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          204 FGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ...|+.+|.++|++++    +++++++++||++++|+...
T Consensus       161 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  200 (325)
T PLN02989        161 KQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQ  200 (325)
T ss_pred             ccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCC
Confidence            3579999999998764    46899999999999998753

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.93  E-value=4.9e-25  Score=192.51  Aligned_cols=174  Identities=24%  Similarity=0.282  Sum_probs=131.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      .++++|+||||+||||++++++|+++|++|++++|+..........  ...+++++.+|++| .+++.+++.+ +|+|||
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~-~d~Vih   85 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQE-EGSFDEAVKG-CDGVFH   85 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCC-HHHHHHHHcC-CCEEEE
Confidence            3578999999999999999999999999999999986554332211  13468899999999 8889999988 999999


Q ss_pred             cCCCCCCC------CCCCc-----ceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCC-----CCCCcch-hc---
Q 025456          142 ATGFQPGW------DLFAP-----WKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMG-----QILNPAY-IF---  200 (252)
Q Consensus       142 ~ag~~~~~------~~~~~-----~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~-----~~~~~~~-~~---  200 (252)
                      +|+.....      ++...     ++.|+.|+.+++++|++.+ +++||++||..+|+....     .+.++.. .+   
T Consensus        86 ~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~  165 (353)
T PLN02896         86 VAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDH  165 (353)
T ss_pred             CCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHH
Confidence            99864321      22222     3445689999999998875 789999999999985321     1222321 11   


Q ss_pred             ----cchhhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          201 ----LNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       201 ----~~~~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                          ..+...|+.+|.++|++++    +++++++++||++++|+...
T Consensus       166 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~  212 (353)
T PLN02896        166 VWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLT  212 (353)
T ss_pred             hhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcC
Confidence                1233579999999998664    46999999999999999653

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.93  E-value=5e-25  Score=190.03  Aligned_cols=172  Identities=27%  Similarity=0.348  Sum_probs=131.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh---ccc--cCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      .+++|+||||+||||++++++|+++|++|+++.|+....+.   ...  ....+++++.+|++| .+.+.+++.+ +|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~-~d~v   81 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLE-ESSFEQAIEG-CDAV   81 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCC-cchHHHHHhC-CCEE
Confidence            47899999999999999999999999999999998654321   111  112468999999999 7889999998 9999


Q ss_pred             EEcCCCCCC--CCC-CCcceehHHHHHHHHHHHHhc-CCCEEEEEccceee--ccCC---CCCCCcchhc-----cchhh
Q 025456          140 VCATGFQPG--WDL-FAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVN--GAAM---GQILNPAYIF-----LNVFG  205 (252)
Q Consensus       140 i~~ag~~~~--~~~-~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~--~~~~---~~~~~~~~~~-----~~~~~  205 (252)
                      ||+|+....  .++ ...+++|+.|+.+++++|++. ++++||++||.++|  +...   +.+.++....     ..+..
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~  161 (322)
T PLN02986         82 FHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKN  161 (322)
T ss_pred             EEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhcccc
Confidence            999986432  122 246789999999999999885 68999999998754  3221   1122222111     12346


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|.++|.++.    +++++++++||++++|+..
T Consensus       162 ~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~  198 (322)
T PLN02986        162 WYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLL  198 (322)
T ss_pred             chHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCC
Confidence            79999999997654    4699999999999999864

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.93  E-value=4.3e-25  Score=207.03  Aligned_cols=170  Identities=18%  Similarity=0.261  Sum_probs=133.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      .+|+|+||||+||||++|+++|+++ |++|++++|.........  ...+++++.+|++|..+.+.+++.+ +|+|||+|
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~--~~~~~~~~~gDl~d~~~~l~~~l~~-~D~ViHlA  390 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFL--GHPRFHFVEGDISIHSEWIEYHIKK-CDVVLPLV  390 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhc--CCCceEEEeccccCcHHHHHHHhcC-CCEEEECc
Confidence            4689999999999999999999986 799999999775433322  2246899999999833336777888 99999999


Q ss_pred             CCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchh-----c-cchhhHHHHHHHH
Q 025456          144 GFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI-----F-LNVFGLTLIAKLQ  213 (252)
Q Consensus       144 g~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~-----~-~~~~~~y~~sK~~  213 (252)
                      +....    .++...+++|+.++.+++++|++.+ ++|||+||..+||...+.+.++...     + .++.+.|+.+|.+
T Consensus       391 a~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~~  469 (660)
T PRK08125        391 AIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQL  469 (660)
T ss_pred             cccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHHHHH
Confidence            86442    2344567899999999999999988 7999999999998654434444321     1 1344679999999


Q ss_pred             HHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          214 AEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       214 ~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      +|++++    .++++++++||++++|+..
T Consensus       470 ~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  498 (660)
T PRK08125        470 LDRVIWAYGEKEGLRFTLFRPFNWMGPRL  498 (660)
T ss_pred             HHHHHHHHHHhcCCceEEEEEceeeCCCc
Confidence            998874    4689999999999999864

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.93  E-value=7.2e-25  Score=187.76  Aligned_cols=168  Identities=28%  Similarity=0.310  Sum_probs=134.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCC-cEEEEcCCCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDS-EAVVCATGFQ  146 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~-d~vi~~ag~~  146 (252)
                      .||||||+||||++|+++|+++|++|++++|.........    .++.++.+|++| .+.+.+.+.+ . |+|||+|+..
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~d~~~-~~~~~~~~~~-~~d~vih~aa~~   75 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL----SGVEFVVLDLTD-RDLVDELAKG-VPDAVIHLAAQS   75 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc----cccceeeecccc-hHHHHHHHhc-CCCEEEEccccC
Confidence            4999999999999999999999999999999876543321    468899999999 6777777777 6 9999999876


Q ss_pred             CCCC-----CCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccC-CCCCCCcchhccchhhHHHHHHHHHHHHHHH
Q 025456          147 PGWD-----LFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA-MGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       147 ~~~~-----~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~-~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      ....     +...+++|+.++.+++++|++.++++|||.||.++|+.. .+.+..+...+..+.+.|+.+|.++|+++..
T Consensus        76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~  155 (314)
T COG0451          76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRA  155 (314)
T ss_pred             chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            5322     223789999999999999999999999998888877654 2223333323445555899999999998764


Q ss_pred             ----cCCcEEEEeCCcccCCCCCCc
Q 025456          221 ----SGINYTIIRPGGLRNEPPTGN  241 (252)
Q Consensus       221 ----~gi~~~~lrPg~i~~~~~~~~  241 (252)
                          .+++++++||++++|+.....
T Consensus       156 ~~~~~~~~~~ilR~~~vyGp~~~~~  180 (314)
T COG0451         156 YARLYGLPVVILRPFNVYGPGDKPD  180 (314)
T ss_pred             HHHHhCCCeEEEeeeeeeCCCCCCC
Confidence                469999999999999986554

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.93  E-value=7.2e-25  Score=189.33  Aligned_cols=156  Identities=24%  Similarity=0.367  Sum_probs=126.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhcccc-CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ++|+|+||||+||||++++++|+++|  ++|++++|+.......... ...+++++.+|++| .+++.+++.+ +|+|||
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d-~~~l~~~~~~-iD~Vih   80 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRD-KERLTRALRG-VDYVVH   80 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCC-HHHHHHHHhc-CCEEEE
Confidence            57999999999999999999999986  7899998876543221111 12468999999999 8999999998 999999


Q ss_pred             cCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHH
Q 025456          142 ATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (252)
Q Consensus       142 ~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (252)
                      +||...    ..++...+++|+.|+.+++++|++.++++||++||...               ..+.+.|+.+|+++|.+
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~---------------~~p~~~Y~~sK~~~E~l  145 (324)
T TIGR03589        81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA---------------ANPINLYGATKLASDKL  145 (324)
T ss_pred             CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC---------------CCCCCHHHHHHHHHHHH
Confidence            998643    22344678999999999999999999899999998521               12346799999999987


Q ss_pred             HH-------HcCCcEEEEeCCcccCCC
Q 025456          218 IR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       218 ~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ++       +.|++++++|||+++|+.
T Consensus       146 ~~~~~~~~~~~gi~~~~lR~g~v~G~~  172 (324)
T TIGR03589       146 FVAANNISGSKGTRFSVVRYGNVVGSR  172 (324)
T ss_pred             HHHHHhhccccCcEEEEEeecceeCCC
Confidence            64       358999999999999975

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.93  E-value=9.2e-25  Score=190.04  Aligned_cols=170  Identities=21%  Similarity=0.175  Sum_probs=132.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-----hhhcccc----CCCCeEEEEeeCCCChHHHHHHHcC-CC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~-~~  136 (252)
                      |+|+||||+||||++|+++|+++|++|++++|+++.     .......    ...+++++.+|++| .+.+.+++.+ ++
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~~~~   79 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTD-SSNLRRIIDEIKP   79 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCC-HHHHHHHHHhCCC
Confidence            589999999999999999999999999999987642     1111110    12468999999999 8889998885 37


Q ss_pred             cEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCC---EEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN---RFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       137 d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~---~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                      |+|||+|+....    .+....+++|+.|+.+++++|++.+++   +||++||..+||.....+..+. .+..+.+.|+.
T Consensus        80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-~~~~p~~~Y~~  158 (343)
T TIGR01472        80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-TPFYPRSPYAA  158 (343)
T ss_pred             CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-CCCCCCChhHH
Confidence            999999986432    123345678999999999999988763   8999999999986544343332 34566788999


Q ss_pred             HHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          210 AKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       210 sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      +|.++|.+++    +++++++..|+.+++++..
T Consensus       159 sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~  191 (343)
T TIGR01472       159 AKLYAHWITVNYREAYGLFAVNGILFNHESPRR  191 (343)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEEeecccCCCCC
Confidence            9999998874    3589999999988888753

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02583 cinnamoyl-CoA reductase

Probab=99.92  E-value=3.7e-24  Score=182.79  Aligned_cols=173  Identities=18%  Similarity=0.238  Sum_probs=129.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh--hccc---cCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--TTLS---KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      .+++|+||||+||||++++++|+++|++|++++|+.+..+  ..+.   ....+++++.+|++| .+++.+++.+ +|.|
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~~~~~l~~-~d~v   82 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLD-YHSILDALKG-CSGL   82 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCC-HHHHHHHHcC-CCEE
Confidence            3689999999999999999999999999999998643211  1111   113468899999999 8889999999 9999


Q ss_pred             EEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceee--ccC---CCCCCCcchhc-----cchhhH
Q 025456          140 VCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVN--GAA---MGQILNPAYIF-----LNVFGL  206 (252)
Q Consensus       140 i~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~--~~~---~~~~~~~~~~~-----~~~~~~  206 (252)
                      +|.++....  .++++.+++|+.|+.+++++|.+. ++++||++||..++  +..   ...+.++....     ......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  162 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLW  162 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccH
Confidence            998764332  224567899999999999999876 57899999998664  211   11122222110     011136


Q ss_pred             HHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          207 TLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       207 y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      |+.+|..+|+++.    +.|+++++|||++++|+...
T Consensus       163 Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~  199 (297)
T PLN02583        163 HALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLT  199 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCC
Confidence            9999999998773    46999999999999998753

>PLN02686 cinnamoyl-CoA reductase

Probab=99.92  E-value=2.8e-24  Score=188.54  Aligned_cols=175  Identities=20%  Similarity=0.261  Sum_probs=133.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--------CCCCeEEEEeeCCCChHHHHHHHc
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--------DNPSLQIVKADVTEGSAKLSEAIG  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~i~~Dl~d~~~~~~~~~~  133 (252)
                      ..+++|+|+||||+||||++++++|+++|++|+++.|+.+..+.....        ...++.++.+|++| .+++.+++.
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d-~~~l~~~i~  127 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTE-PESLHEAFD  127 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCC-HHHHHHHHH
Confidence            345689999999999999999999999999999988876543321110        01358899999999 888999999


Q ss_pred             CCCcEEEEcCCCCCCC----CCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccc--eeeccC--CC--CCCCcch----
Q 025456          134 DDSEAVVCATGFQPGW----DLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSI--LVNGAA--MG--QILNPAY----  198 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~~----~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~--~v~~~~--~~--~~~~~~~----  198 (252)
                      + +|.|||+++.....    .+....++|+.++.+++++|++. ++++||++||.  .+|+..  ..  ...++..    
T Consensus       128 ~-~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~  206 (367)
T PLN02686        128 G-CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE  206 (367)
T ss_pred             h-ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence            8 99999999864322    12345678999999999999886 79999999996  467642  11  1122211    


Q ss_pred             -hccchhhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          199 -IFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 -~~~~~~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                       .+.++...|+.+|.++|++++    ++|++++++||++++|+..
T Consensus       207 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~  251 (367)
T PLN02686        207 SFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGF  251 (367)
T ss_pred             hhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCC
Confidence             223455679999999998874    4699999999999999964

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.92  E-value=4.9e-25  Score=181.34  Aligned_cols=165  Identities=30%  Similarity=0.388  Sum_probs=137.2

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCCCC
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQP  147 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~~~  147 (252)
                      |+||||+||||++++++|+++|++|+.+.|+.........  ..+++++.+|+.| .+.+.+++.. .+|+|||+|+...
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~dl~~-~~~~~~~~~~~~~d~vi~~a~~~~   77 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEK--KLNVEFVIGDLTD-KEQLEKLLEKANIDVVIHLAAFSS   77 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHH--HTTEEEEESETTS-HHHHHHHHHHHTESEEEEEBSSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccc--cceEEEEEeeccc-cccccccccccCceEEEEeecccc
Confidence            7999999999999999999999999988888765432111  1279999999999 8889998876 3699999998752


Q ss_pred             ----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH----
Q 025456          148 ----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR----  219 (252)
Q Consensus       148 ----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----  219 (252)
                          ..+....++.|+.++.+++++|++.+++++|++||..+|+...+.+.++.... ++.+.|+.+|...|++++    
T Consensus        78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~-~~~~~Y~~~K~~~e~~~~~~~~  156 (236)
T PF01370_consen   78 NPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPI-NPLSPYGASKRAAEELLRDYAK  156 (236)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGC-CHSSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence                12445667899999999999999999999999999999998855555554444 778889999999998875    


Q ss_pred             HcCCcEEEEeCCcccCCC
Q 025456          220 KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       220 ~~gi~~~~lrPg~i~~~~  237 (252)
                      +.+++++++||+.++|+.
T Consensus       157 ~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  157 KYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHTSEEEEEEESEEESTT
T ss_pred             cccccccccccccccccc
Confidence            358999999999999998

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.92  E-value=2.5e-24  Score=185.44  Aligned_cols=150  Identities=31%  Similarity=0.439  Sum_probs=124.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|+|||||||||++++++|+++|++|++++|+.+......   ..+++++.+|++| .+++.+++.+ +|+|||+++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~---~~~v~~v~~Dl~d-~~~l~~al~g-~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK---EWGAELVYGDLSL-PETLPPSFKG-VTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh---hcCCEEEECCCCC-HHHHHHHHCC-CCEEEECCCCC
Confidence            48999999999999999999999999999999875543211   2468999999999 8899999999 99999998743


Q ss_pred             CCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCcEE
Q 025456          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT  226 (252)
Q Consensus       147 ~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~~  226 (252)
                      . .+.....++|+.++.+++++|+++++++||++||.+++..              +...|..+|..+|+++++.+++++
T Consensus        76 ~-~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~--------------~~~~~~~~K~~~e~~l~~~~l~~t  140 (317)
T CHL00194         76 P-SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQY--------------PYIPLMKLKSDIEQKLKKSGIPYT  140 (317)
T ss_pred             C-CCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccccccc--------------CCChHHHHHHHHHHHHHHcCCCeE
Confidence            2 3445677899999999999999999999999999643210              113467889999999999999999


Q ss_pred             EEeCCcccCC
Q 025456          227 IIRPGGLRNE  236 (252)
Q Consensus       227 ~lrPg~i~~~  236 (252)
                      ++||+.+++.
T Consensus       141 ilRp~~~~~~  150 (317)
T CHL00194        141 IFRLAGFFQG  150 (317)
T ss_pred             EEeecHHhhh
Confidence            9999987754

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=1.8e-24  Score=179.38  Aligned_cols=176  Identities=21%  Similarity=0.226  Sum_probs=145.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh----hh--ccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA----KT--TLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~----~~--~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~  138 (252)
                      .++||||||+||||+|.+-+|+++|+.|++++.-....    ..  .+-....++.++++|++| ...+++.|+. ++|.
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D-~~~L~kvF~~~~fd~   80 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLND-AEALEKLFSEVKFDA   80 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCC-HHHHHHHHhhcCCce
Confidence            57999999999999999999999999999987532221    11  111134789999999999 8999999986 7999


Q ss_pred             EEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHH
Q 025456          139 VVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       139 vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (252)
                      |+|.|+...    -.++..++..|+.|+.++++.|++++++.+||.||+.+||....-|..+......+.+.|+.+|.+.
T Consensus        81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~i  160 (343)
T KOG1371|consen   81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAI  160 (343)
T ss_pred             EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHH
Confidence            999997644    2467788899999999999999999999999999999999987777666554445889999999999


Q ss_pred             HHHHHH----cCCcEEEEeCCcccCCCCCCce
Q 025456          215 EQYIRK----SGINYTIIRPGGLRNEPPTGNI  242 (252)
Q Consensus       215 e~~~~~----~gi~~~~lrPg~i~~~~~~~~~  242 (252)
                      |+....    .++.++.||..+++|....|.+
T Consensus       161 E~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~  192 (343)
T KOG1371|consen  161 EEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRI  192 (343)
T ss_pred             HHHHHhhhccccceEEEEEeccccCccccCcc
Confidence            998864    4689999999999996655544

>PLN02240 UDP-glucose 4-epimerase

Probab=99.92  E-value=4.4e-24  Score=186.21  Aligned_cols=173  Identities=21%  Similarity=0.217  Sum_probs=135.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-------hhccccCCCCeEEEEeeCCCChHHHHHHHcC-
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-------KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-------~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-  134 (252)
                      ++++++|+||||+||||++++++|+++|++|++++|.....       .........++.++.+|++| .+++.+++.+ 
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~l~~~~~~~   80 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD-KEALEKVFAST   80 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC-HHHHHHHHHhC
Confidence            45679999999999999999999999999999998753211       11111112468899999999 7888888763 


Q ss_pred             CCcEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHH
Q 025456          135 DSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       135 ~~d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~s  210 (252)
                      .+|+|||+|+....    .++...+++|+.++.+++++|++.++++||++||..+|+...+.+.++. .+.++...|+.+
T Consensus        81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-~~~~~~~~Y~~s  159 (352)
T PLN02240         81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-FPLSATNPYGRT  159 (352)
T ss_pred             CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-CCCCCCCHHHHH
Confidence            48999999986431    2344568899999999999999999899999999999986544444443 345567889999


Q ss_pred             HHHHHHHHHH-----cCCcEEEEeCCcccCCC
Q 025456          211 KLQAEQYIRK-----SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       211 K~~~e~~~~~-----~gi~~~~lrPg~i~~~~  237 (252)
                      |.++|++++.     .+++++++|+++++|+.
T Consensus       160 K~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~  191 (352)
T PLN02240        160 KLFIEEICRDIHASDPEWKIILLRYFNPVGAH  191 (352)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEeecCcCCCC
Confidence            9999998752     46889999999998864

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.92  E-value=1.4e-24  Score=193.97  Aligned_cols=166  Identities=21%  Similarity=0.273  Sum_probs=128.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc--cCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +.|+|+||||+||||++|+++|+++|++|++++|..........  ....+++++.+|+.+ .     .+.+ +|+|||+
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~-~-----~~~~-~D~ViHl  191 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVE-P-----ILLE-VDQIYHL  191 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECcccc-c-----cccC-CCEEEEC
Confidence            45899999999999999999999999999999875322111110  012467888889877 3     2456 9999999


Q ss_pred             CCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcch----hccchhhHHHHHHHHH
Q 025456          143 TGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKLQA  214 (252)
Q Consensus       143 ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~----~~~~~~~~y~~sK~~~  214 (252)
                      |+...    ..++...+++|+.|+.+++++|++.++ +||++||..+||...+.+.++..    .+..+...|+.+|.++
T Consensus       192 Aa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~a  270 (436)
T PLN02166        192 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA  270 (436)
T ss_pred             ceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHH
Confidence            98543    124456678999999999999999886 89999999999876544444432    2445567899999999


Q ss_pred             HHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          215 EQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       215 e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      |++++    ..+++++++||+++||+..
T Consensus       271 E~~~~~y~~~~~l~~~ilR~~~vYGp~~  298 (436)
T PLN02166        271 ETLAMDYHRGAGVEVRIARIFNTYGPRM  298 (436)
T ss_pred             HHHHHHHHHHhCCCeEEEEEccccCCCC
Confidence            98775    3589999999999999863

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.92  E-value=3e-24  Score=187.60  Aligned_cols=171  Identities=16%  Similarity=0.153  Sum_probs=128.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhh--hhccc-cCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKA--KTTLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~--~~~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      |++|+|||||||||+++++.|+++|++|+++ +|.....  ..... ....++.++.+|++| .+++.+++.+ ++|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD-RAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcC-hHHHHHHHhhcCCCEEE
Confidence            4789999999999999999999999876544 4432211  11111 012357889999999 7888888874 489999


Q ss_pred             EcCCCCCC----CCCCCcceehHHHHHHHHHHHHh---------cCCCEEEEEccceeeccCCC--CCCCcchhccchhh
Q 025456          141 CATGFQPG----WDLFAPWKVDNFGTVNLVEACRK---------RGVNRFILISSILVNGAAMG--QILNPAYIFLNVFG  205 (252)
Q Consensus       141 ~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~---------~~~~~~v~~SS~~v~~~~~~--~~~~~~~~~~~~~~  205 (252)
                      |+||....    .++...+++|+.|+.+++++|++         .++++||++||..+|+...+  .+..+. .+..+.+
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-~~~~p~s  158 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-TPYAPSS  158 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-CCCCCCC
Confidence            99986432    24556789999999999999976         24679999999999985422  223332 2345567


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|.++|.+++    +.+++++++||++++|+..
T Consensus       159 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~  195 (355)
T PRK10217        159 PYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH  195 (355)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence            89999999997764    4689999999999999875

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=4.5e-24  Score=174.79  Aligned_cols=170  Identities=22%  Similarity=0.147  Sum_probs=136.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecC-----chhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRD-----LDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~-----~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~  138 (252)
                      |++|||||.||||+++++.++++.  ++|+.++.=     .+.+....  ..++..++++||+| .+.+.+++.. ++|+
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~--~~~~~~fv~~DI~D-~~~v~~~~~~~~~D~   77 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVE--DSPRYRFVQGDICD-RELVDRLFKEYQPDA   77 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhh--cCCCceEEeccccC-HHHHHHHHHhcCCCe
Confidence            589999999999999999999875  346666542     12222211  44689999999999 8999999985 5999


Q ss_pred             EEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEccceeeccCCCC-CCCcchhccchhhHHHHHHH
Q 025456          139 VVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQ-ILNPAYIFLNVFGLTLIAKL  212 (252)
Q Consensus       139 vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~SS~~v~~~~~~~-~~~~~~~~~~~~~~y~~sK~  212 (252)
                      |+|.|+-.+    -.++..++++|+.||.+|||++++...+ ||+++|+-.|||+.... +...+..+.+|.++|.+||+
T Consensus        78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKA  157 (340)
T COG1088          78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKA  157 (340)
T ss_pred             EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhh
Confidence            999998654    2356778899999999999999998754 89999999999986542 22334557788899999999


Q ss_pred             HHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          213 QAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       213 ~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      +++.+++    .+|+++++.|+++-|||...
T Consensus       158 asD~lVray~~TYglp~~ItrcSNNYGPyqf  188 (340)
T COG1088         158 ASDLLVRAYVRTYGLPATITRCSNNYGPYQF  188 (340)
T ss_pred             hHHHHHHHHHHHcCCceEEecCCCCcCCCcC
Confidence            9998775    47999999999999998643

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.92  E-value=2e-24  Score=193.16  Aligned_cols=165  Identities=21%  Similarity=0.270  Sum_probs=127.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc-c-cCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL-S-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~-~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++|+|+||||+||||++|+++|+++|++|++++|......+.. . -...+++++.+|+.+ .     .+.+ +|+|||+
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~-~-----~l~~-~D~ViHl  190 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVE-P-----ILLE-VDQIYHL  190 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccC-h-----hhcC-CCEEEEe
Confidence            5689999999999999999999999999999887533221111 0 023468888999877 3     2456 9999999


Q ss_pred             CCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcch----hccchhhHHHHHHHHH
Q 025456          143 TGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKLQA  214 (252)
Q Consensus       143 ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~----~~~~~~~~y~~sK~~~  214 (252)
                      |+...    ..++...+++|+.++.+++++|++.++ +||++||..+|+.....+..+.+    .+..+.+.|+.+|.++
T Consensus       191 Aa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~a  269 (442)
T PLN02206        191 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTA  269 (442)
T ss_pred             eeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHH
Confidence            98543    224556678999999999999999996 99999999999865444443432    2344457899999999


Q ss_pred             HHHHH----HcCCcEEEEeCCcccCCC
Q 025456          215 EQYIR----KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       215 e~~~~----~~gi~~~~lrPg~i~~~~  237 (252)
                      |+++.    .++++++++||+++||+.
T Consensus       270 E~~~~~y~~~~g~~~~ilR~~~vyGp~  296 (442)
T PLN02206        270 ETLTMDYHRGANVEVRIARIFNTYGPR  296 (442)
T ss_pred             HHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            98775    368999999999999986

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.92  E-value=4.4e-24  Score=185.19  Aligned_cols=170  Identities=19%  Similarity=0.212  Sum_probs=131.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---ccc-CCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSK-DNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~  141 (252)
                      |+|+||||+||||++++++|+++|++|++++|........   +.. ...++.++.+|++| .+.+.+++.. ++|+|||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~vvh   79 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-EALLTEILHDHAIDTVIH   79 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCC-HHHHHHHHhcCCCCEEEE
Confidence            4799999999999999999999999999987643221111   110 12357888999999 7888888763 4999999


Q ss_pred             cCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHH
Q 025456          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (252)
Q Consensus       142 ~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (252)
                      +|+....    .+..+.+++|+.++.+++++|++.++++||++||..+|+.....+.++.....++...|+.+|.++|++
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~  159 (338)
T PRK10675         80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQI  159 (338)
T ss_pred             CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHHHH
Confidence            9986532    233456789999999999999999999999999999998654444444433335678899999999988


Q ss_pred             HHH-----cCCcEEEEeCCcccCCC
Q 025456          218 IRK-----SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       218 ~~~-----~gi~~~~lrPg~i~~~~  237 (252)
                      ++.     .+++++++|++.++|+.
T Consensus       160 ~~~~~~~~~~~~~~ilR~~~v~g~~  184 (338)
T PRK10675        160 LTDLQKAQPDWSIALLRYFNPVGAH  184 (338)
T ss_pred             HHHHHHhcCCCcEEEEEeeeecCCC
Confidence            763     37899999999888864

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.92  E-value=6.8e-24  Score=182.89  Aligned_cols=167  Identities=25%  Similarity=0.310  Sum_probs=134.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|+||||+||||+++++.|+++|++|++++|+++.....   ...+++++.+|++| .+++.+++.+ +|+|||+++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~~~~~D~~~-~~~l~~~~~~-~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL---EGLDVEIVEGDLRD-PASLRKAVAG-CRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc---ccCCceEEEeeCCC-HHHHHHHHhC-CCEEEEeceec
Confidence            4799999999999999999999999999999986543221   12368899999999 8899999998 99999999754


Q ss_pred             C--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccC-CCCCCCcchh--ccchhhHHHHHHHHHHHHHHH-
Q 025456          147 P--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA-MGQILNPAYI--FLNVFGLTLIAKLQAEQYIRK-  220 (252)
Q Consensus       147 ~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~-~~~~~~~~~~--~~~~~~~y~~sK~~~e~~~~~-  220 (252)
                      .  ..++...+++|+.++.++++++++.++++||++||..+|+.. .+.+.++...  +....+.|+.+|.++|++++. 
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~  155 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEM  155 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHHHHHHHHHHH
Confidence            3  234456688999999999999999999999999999999853 2333333221  112246799999999988764 


Q ss_pred             ---cCCcEEEEeCCcccCCCC
Q 025456          221 ---SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       221 ---~gi~~~~lrPg~i~~~~~  238 (252)
                         .+++++++||+.++|+..
T Consensus       156 ~~~~~~~~~ilR~~~~~G~~~  176 (328)
T TIGR03466       156 AAEKGLPVVIVNPSTPIGPRD  176 (328)
T ss_pred             HHhcCCCEEEEeCCccCCCCC
Confidence               589999999999999864

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.92  E-value=6.6e-24  Score=181.70  Aligned_cols=170  Identities=22%  Similarity=0.293  Sum_probs=133.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhh--h-ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAK--T-TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~--~-~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ++.+++||||+||+|++++++|++++  .+|++++..+....  . ........++++++|+.| ...+.+++.+ + .|
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~-~~~i~~a~~~-~-~V   79 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLD-ANSISNAFQG-A-VV   79 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhh-hhhhhhhccC-c-eE
Confidence            57899999999999999999999988  78999888764211  1 111125679999999999 8889999999 8 77


Q ss_pred             EEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCC---CCcchhccchhhHHHHHHH
Q 025456          140 VCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQI---LNPAYIFLNVFGLTLIAKL  212 (252)
Q Consensus       140 i~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~---~~~~~~~~~~~~~y~~sK~  212 (252)
                      +|+|+...    ..+.+..+++|+.||.+++++|++.+++++||+||..|........   .+.++ +.+....|..+|+
T Consensus        80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~-p~~~~d~Y~~sKa  158 (361)
T KOG1430|consen   80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPY-PLKHIDPYGESKA  158 (361)
T ss_pred             EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCC-ccccccccchHHH
Confidence            77765432    2357788999999999999999999999999999999865433211   11222 2455578999999


Q ss_pred             HHHHHHHHc----CCcEEEEeCCcccCCCC
Q 025456          213 QAEQYIRKS----GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       213 ~~e~~~~~~----gi~~~~lrPg~i~~~~~  238 (252)
                      .+|+++.+.    ++..++|||..|||++.
T Consensus       159 ~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd  188 (361)
T KOG1430|consen  159 LAEKLVLEANGSDDLYTCALRPPGIYGPGD  188 (361)
T ss_pred             HHHHHHHHhcCCCCeeEEEEccccccCCCC
Confidence            999998753    38899999999999975

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.91  E-value=2.9e-23  Score=164.73  Aligned_cols=152  Identities=34%  Similarity=0.498  Sum_probs=129.2

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCCCC
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG  148 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~  148 (252)
                      |+|+||||++|++++++|+++|++|++++|++++.++     ..+++++++|+.| .+++.+++.+ +|+||+++|....
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~~d-~~~~~~al~~-~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDLFD-PDSVKAALKG-ADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCTTC-HHHHHHHHTT-SSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeeehh-hhhhhhhhhh-cchhhhhhhhhcc
Confidence            7999999999999999999999999999999887665     4789999999999 8999999999 9999999976443


Q ss_pred             CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCcEEEE
Q 025456          149 WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTII  228 (252)
Q Consensus       149 ~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~~~l  228 (252)
                               +...+.+++++|++.+++++|++|+.++|........   ......+..|...|..+|+++++.+++|+++
T Consensus        74 ---------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~~~~~~~~~~~iv  141 (183)
T PF13460_consen   74 ---------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFS---DEDKPIFPEYARDKREAEEALRESGLNWTIV  141 (183)
T ss_dssp             ---------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEE---GGTCGGGHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred             ---------cccccccccccccccccccceeeeccccCCCCCcccc---cccccchhhhHHHHHHHHHHHHhcCCCEEEE
Confidence                     2778999999999999999999999988775433211   1112233678899999999999999999999


Q ss_pred             eCCcccCCCCC
Q 025456          229 RPGGLRNEPPT  239 (252)
Q Consensus       229 rPg~i~~~~~~  239 (252)
                      ||+.++++...
T Consensus       142 rp~~~~~~~~~  152 (183)
T PF13460_consen  142 RPGWIYGNPSR  152 (183)
T ss_dssp             EESEEEBTTSS
T ss_pred             ECcEeEeCCCc
Confidence            99999998855

...

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.91  E-value=8.7e-24  Score=183.68  Aligned_cols=172  Identities=17%  Similarity=0.156  Sum_probs=133.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-----hhccc---cCCCCeEEEEeeCCCChHHHHHHHcC-
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-----KTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-----~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~-  134 (252)
                      .++++|+||||+||||++++++|+++|++|++++|+.+..     +....   ....++.++.+|++| .+++.+++.. 
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~   82 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSD-ASSLRRWLDDI   82 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCC-HHHHHHHHHHc
Confidence            4578999999999999999999999999999999875421     11110   012458899999999 8888888875 


Q ss_pred             CCcEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCC-----EEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          135 DSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN-----RFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       135 ~~d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~-----~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      ++|+|||+|+....    .++...+++|+.|+.+++++|++.+++     +||++||..+||.... +..+. .+..+.+
T Consensus        83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~-~~~~p~~  160 (340)
T PLN02653         83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-TPFHPRS  160 (340)
T ss_pred             CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCC-CCCCCCC
Confidence            37999999997432    234455689999999999999988864     8999999999987543 33332 3456678


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|.++|.+++    +++++++..|+.+++++..
T Consensus       161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~  197 (340)
T PLN02653        161 PYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRR  197 (340)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCC
Confidence            89999999998874    4588888888888888753

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.91  E-value=2.6e-24  Score=179.19  Aligned_cols=169  Identities=23%  Similarity=0.272  Sum_probs=107.5

Q ss_pred             EEcCCChHHHHHHHHHHHCCC--eEEEeecCchhh---hhc---ccc----------CCCCeEEEEeeCCCC-----hHH
Q 025456           71 VAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKA---KTT---LSK----------DNPSLQIVKADVTEG-----SAK  127 (252)
Q Consensus        71 VtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~---~~~---~~~----------~~~~~~~i~~Dl~d~-----~~~  127 (252)
                      |||||||||++|+++|++++.  +|++++|..+..   +.+   +..          ...+++++.+|++++     .+.
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999876  899999986431   111   110          157899999999983     244


Q ss_pred             HHHHHcCCCcEEEEcCCCCC-CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCC--------CCcch
Q 025456          128 LSEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQI--------LNPAY  198 (252)
Q Consensus       128 ~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~--------~~~~~  198 (252)
                      ..+.... +|+|||||+... ..+..+..++|+.|+.++++.|.+.+.++|+|+||..+.+...+..        ..+..
T Consensus        81 ~~~L~~~-v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~  159 (249)
T PF07993_consen   81 YQELAEE-VDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEEEDDLD  159 (249)
T ss_dssp             HHHHHHH---EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH--EEE
T ss_pred             hhccccc-cceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccccccccch
Confidence            5555566 999999998655 3355567899999999999999977666999999965554443221        11112


Q ss_pred             hccchhhHHHHHHHHHHHHHHH----cCCcEEEEeCCcccCCCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~~~  240 (252)
                      ......+.|.+||+.+|+++++    .|++++++|||.|.|...+|
T Consensus       160 ~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G  205 (249)
T PF07993_consen  160 PPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTG  205 (249)
T ss_dssp             --TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS
T ss_pred             hhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCc
Confidence            2334456899999999998864    39999999999999977665

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.91  E-value=1.2e-23  Score=178.32  Aligned_cols=150  Identities=26%  Similarity=0.309  Sum_probs=125.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQ  146 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~~  146 (252)
                      +|+||||+||||++++++|+++|++|++++|.                  .+|+.| .+++.+++.+ ++|+|||+++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~------------------~~d~~~-~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS------------------QLDLTD-PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc------------------ccCCCC-HHHHHHHHHhCCCCEEEECCccc
Confidence            58999999999999999999999999998874                  368888 8889988886 369999999864


Q ss_pred             CCC----CCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcC
Q 025456          147 PGW----DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG  222 (252)
Q Consensus       147 ~~~----~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~g  222 (252)
                      ...    .+...+++|+.++.+++++|++.+. +||++||.++|+...+.+.++.. +.++.+.|+.+|..+|++++..+
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~~~~~~~E~~-~~~~~~~Y~~~K~~~E~~~~~~~  139 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGEGKRPYREDD-ATNPLNVYGQSKLAGEQAIRAAG  139 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCCCCCCCCCCC-CCCCcchhhHHHHHHHHHHHHhC
Confidence            321    2334678999999999999998885 89999999999765444554443 34567889999999999999889


Q ss_pred             CcEEEEeCCcccCCCC
Q 025456          223 INYTIIRPGGLRNEPP  238 (252)
Q Consensus       223 i~~~~lrPg~i~~~~~  238 (252)
                      .+++++||+.++|+..
T Consensus       140 ~~~~ilR~~~v~G~~~  155 (287)
T TIGR01214       140 PNALIVRTSWLYGGGG  155 (287)
T ss_pred             CCeEEEEeeecccCCC
Confidence            9999999999999874

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.91  E-value=6e-23  Score=181.36  Aligned_cols=157  Identities=29%  Similarity=0.440  Sum_probs=127.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh-----ccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-----TLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ..++++|+||||||+||++++++|+++|++|++++|+.+....     .......+++++.+|++| .+++.+++.+   
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~~  135 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD-ADSLRKVLFSEGD  135 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC-HHHHHHHHHHhCC
Confidence            3468899999999999999999999999999999998754321     011123478999999999 8889888873   


Q ss_pred             CCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHH
Q 025456          135 DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (252)
                      ++|+||||++.... .....+++|+.++.+++++|++.++++||++||.++++               +...|..+|..+
T Consensus       136 ~~D~Vi~~aa~~~~-~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~---------------p~~~~~~sK~~~  199 (390)
T PLN02657        136 PVDVVVSCLASRTG-GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK---------------PLLEFQRAKLKF  199 (390)
T ss_pred             CCcEEEECCccCCC-CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC---------------cchHHHHHHHHH
Confidence            39999999885332 23456788999999999999999999999999987652               134567899999


Q ss_pred             HHHHHH--cCCcEEEEeCCcccCC
Q 025456          215 EQYIRK--SGINYTIIRPGGLRNE  236 (252)
Q Consensus       215 e~~~~~--~gi~~~~lrPg~i~~~  236 (252)
                      |+.++.  .+++++++||+.+++.
T Consensus       200 E~~l~~~~~gl~~tIlRp~~~~~~  223 (390)
T PLN02657        200 EAELQALDSDFTYSIVRPTAFFKS  223 (390)
T ss_pred             HHHHHhccCCCCEEEEccHHHhcc
Confidence            988875  7999999999998865

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.90  E-value=1.7e-23  Score=168.21  Aligned_cols=159  Identities=21%  Similarity=0.191  Sum_probs=125.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCC-CCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN-PSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      ++|.++|||||++||.+++++|+++|++|++..|+.++++++..... ..+..+..|++| .+++.+++..      ++|
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD-~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTD-RAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCC-HHHHHHHHHHHHHhhCccc
Confidence            57999999999999999999999999999999999998877554333 468899999999 6665544431      499


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      ++|||||....        .+|+.++++|+.|..+..++.    .+++.++||++||++..-            ++...+
T Consensus        84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~------------~y~~~~  151 (246)
T COG4221          84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY------------PYPGGA  151 (246)
T ss_pred             EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc------------cCCCCc
Confidence            99999997552        468889999999988877775    566667999999986311            112236


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                      .|+.+|++..++.+       ..+++++.|.||.+.+.
T Consensus       152 vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~  189 (246)
T COG4221         152 VYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETT  189 (246)
T ss_pred             cchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecce
Confidence            78999998887643       25899999999988543

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.90  E-value=2.6e-23  Score=195.59  Aligned_cols=172  Identities=19%  Similarity=0.228  Sum_probs=132.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCc--hhhhhcccc-CCCCeEEEEeeCCCChHHHHHHH--cCCCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDL--DKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAI--GDDSE  137 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~--~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~--~~~~d  137 (252)
                      ++|+|+|||||||||++++++|+++  |++|++++|..  +........ ...+++++.+|++| .+.+.+.+  .+ +|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~-~D   82 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIAS-ADLVNYLLITEG-ID   82 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCC-hHHHHHHHhhcC-CC
Confidence            4689999999999999999999998  68999888753  111111111 23578999999999 77777665  45 99


Q ss_pred             EEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCCCCC--CcchhccchhhHHHHH
Q 025456          138 AVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQIL--NPAYIFLNVFGLTLIA  210 (252)
Q Consensus       138 ~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~~~~--~~~~~~~~~~~~y~~s  210 (252)
                      +|||+|+....    .+..+.+++|+.++.+++++|++.+ +++|||+||..+||.....+.  ..+..+..+.+.|+.+
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~s  162 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSAT  162 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHH
Confidence            99999987542    2334567899999999999999987 789999999999986543221  1122234456789999


Q ss_pred             HHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          211 KLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       211 K~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      |.++|++++    +++++++++||+++||+..
T Consensus       163 K~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~  194 (668)
T PLN02260        163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ  194 (668)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence            999998875    3689999999999999875

>PRK06196 oxidoreductase; Provisional

Probab=99.90  E-value=9.3e-23  Score=175.51  Aligned_cols=175  Identities=15%  Similarity=0.126  Sum_probs=125.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CC
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DD  135 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~  135 (252)
                      .++++++|+||||+|+||++++++|+++|++|++++|+.++.++.... ..++.++++|++| .+++.+++.      ++
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~-l~~v~~~~~Dl~d-~~~v~~~~~~~~~~~~~   99 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG-IDGVEVVMLDLAD-LESVRAFAERFLDSGRR   99 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hhhCeEEEccCCC-HHHHHHHHHHHHhcCCC
Confidence            345689999999999999999999999999999999998765543321 1247899999999 777766553      24


Q ss_pred             CcEEEEcCCCCCC------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          136 SEAVVCATGFQPG------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       136 ~d~vi~~ag~~~~------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +|+||||||....      .+++..+++|+.++.++++.+    ++.+.++||++||.................+..++.
T Consensus       100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~  179 (315)
T PRK06196        100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGYDKWL  179 (315)
T ss_pred             CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCCChHH
Confidence            9999999996431      234556789999976666654    555557999999975422111000000012234567


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|.+.+.+.+       +.|+++++++||++.++..
T Consensus       180 ~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~  219 (315)
T PRK06196        180 AYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQ  219 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCcc
Confidence            89999999886653       3589999999999998853

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.90  E-value=1.9e-23  Score=179.07  Aligned_cols=161  Identities=19%  Similarity=0.267  Sum_probs=117.6

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHH-HHHHHcC----CCcEEEE
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAK-LSEAIGD----DSEAVVC  141 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~-~~~~~~~----~~d~vi~  141 (252)
                      |+||||+||||++|+++|+++|++++++.|+......       ...+..+|+.|.  .++ +.+++.+    ++|+|||
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih   74 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-------FVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFH   74 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH-------HHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEE
Confidence            7999999999999999999999987777766432111       012234566551  222 3333321    3999999


Q ss_pred             cCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH
Q 025456          142 ATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (252)
Q Consensus       142 ~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (252)
                      +||....  .+....++.|+.++.+++++|++.++ +||++||..+|+...+.+.++ ..+.++.+.|+.+|.++|++++
T Consensus        75 ~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E-~~~~~p~~~Y~~sK~~~E~~~~  152 (308)
T PRK11150         75 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDDFIEE-REYEKPLNVYGYSKFLFDEYVR  152 (308)
T ss_pred             CceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCCCCcc-CCCCCCCCHHHHHHHHHHHHHH
Confidence            9985332  23334678999999999999999987 799999999998754333333 2345666789999999998776


Q ss_pred             H----cCCcEEEEeCCcccCCCC
Q 025456          220 K----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       220 ~----~gi~~~~lrPg~i~~~~~  238 (252)
                      .    .+++++++||++++|+..
T Consensus       153 ~~~~~~~~~~~~lR~~~vyG~~~  175 (308)
T PRK11150        153 QILPEANSQICGFRYFNVYGPRE  175 (308)
T ss_pred             HHHHHcCCCEEEEeeeeecCCCC
Confidence            4    589999999999999864

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.90  E-value=4.4e-23  Score=170.04  Aligned_cols=163  Identities=19%  Similarity=0.249  Sum_probs=126.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .+++++++|||||++||.+++++|+++|++|+++.|+.++++++..+    .+-.++++.+|+++ .+++.+....    
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~-~~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSD-PEALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC-hhHHHHHHHHHHhc
Confidence            34689999999999999999999999999999999999988765432    23467899999999 6666655431    


Q ss_pred             --CCcEEEEcCCCCCCC-----C---CCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPGW-----D---LFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~-----~---~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        .+|++|||||.....     +   .++++++|+.+...+..+.    .+.+.++||+++|...+-.            
T Consensus        82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p------------  149 (265)
T COG0300          82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIP------------  149 (265)
T ss_pred             CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCC------------
Confidence              499999999976532     2   2356789999976665554    6777789999999865422            


Q ss_pred             cchhhHHHHHHHHHHHHH-------HHcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~-------~~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....+.|+++|+..-.+.       +..|++|+.+.||.+.++..
T Consensus       150 ~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~  194 (265)
T COG0300         150 TPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFF  194 (265)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccc
Confidence            223578999999765432       35799999999999999865

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.90  E-value=8.2e-23  Score=178.30  Aligned_cols=170  Identities=18%  Similarity=0.149  Sum_probs=127.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCch--hhhhccc-cCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLD--KAKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~--~~~~~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~  141 (252)
                      |+|+||||+||||++|+++|+++|++ |+++++...  ....... ....+++++.+|++| .+++.+++.+ .+|+|||
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICD-RAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCC-HHHHHHHHHhcCCCEEEE
Confidence            47999999999999999999999976 554444321  1111110 012457889999999 8888888864 4899999


Q ss_pred             cCCCCC----CCCCCCcceehHHHHHHHHHHHHhc---------CCCEEEEEccceeeccCCC----------CCCCcch
Q 025456          142 ATGFQP----GWDLFAPWKVDNFGTVNLVEACRKR---------GVNRFILISSILVNGAAMG----------QILNPAY  198 (252)
Q Consensus       142 ~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~---------~~~~~v~~SS~~v~~~~~~----------~~~~~~~  198 (252)
                      +||...    ..+++..+++|+.|+.+++++|++.         ++++||++||..+|+....          .+..+ .
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E-~  158 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTE-T  158 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccc-c
Confidence            998643    2345678899999999999999864         4568999999999985311          01122 2


Q ss_pred             hccchhhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+.++.+.|+.+|.++|.+++    .++++++++||+.++|+..
T Consensus       159 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~  202 (352)
T PRK10084        159 TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH  202 (352)
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence            244667889999999998774    3689999999999999874

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.90  E-value=5.9e-23  Score=173.56  Aligned_cols=160  Identities=21%  Similarity=0.262  Sum_probs=124.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      .+++++||||+|+||++++++|+++|++|++++|+++....+......++..+.+|++| .+++.+.+.+      .+|+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~~~d~   81 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTD-FDAIDAVVADAEATFGPIDV   81 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC-HHHHHHHHHHHHHHhCCCCE
Confidence            46899999999999999999999999999999999876654433233568889999999 7776665542      3899


Q ss_pred             EEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ||||||.....        ++...+++|+.|+.++++++    ++.+.++||++||...+...            .+...
T Consensus        82 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~------------~~~~~  149 (277)
T PRK06180         82 LVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITM------------PGIGY  149 (277)
T ss_pred             EEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCC------------CCcch
Confidence            99999975421        23345789999999999985    44556799999998654221            13467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      |+.+|++.|.+++       .+|+++++++||.+.++.
T Consensus       150 Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~  187 (277)
T PRK06180        150 YCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDW  187 (277)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCc
Confidence            8999998887654       258999999999998864

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.90  E-value=1.2e-22  Score=174.12  Aligned_cols=168  Identities=23%  Similarity=0.198  Sum_probs=128.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCch--hhhh--ccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLD--KAKT--TLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~--~~~~--~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      +|+||||||+||++++++|+++|  ++|++++|...  ..+.  .+. ...+++++.+|++| .+++.+++++ ++|+||
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~-~~~~~~~~~~~~~d~vi   78 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE-DNPRYRFVKGDIGD-RELVSRLFTEHQPDAVV   78 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc-cCCCcEEEEcCCcC-HHHHHHHHhhcCCCEEE
Confidence            58999999999999999999987  78988876421  1111  111 12468899999999 8888888875 589999


Q ss_pred             EcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEccceeeccCCCC-CCCcchhccchhhHHHHHHHHH
Q 025456          141 CATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQ-ILNPAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       141 ~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~SS~~v~~~~~~~-~~~~~~~~~~~~~~y~~sK~~~  214 (252)
                      |+|+....    .++...+++|+.++.+++++|++.+.+ ++|++||..+|+..... +..+ ..+..+...|+.+|..+
T Consensus        79 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e-~~~~~~~~~Y~~sK~~~  157 (317)
T TIGR01181        79 HFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTE-TTPLAPSSPYSASKAAS  157 (317)
T ss_pred             EcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCC-CCCCCCCCchHHHHHHH
Confidence            99986431    244566789999999999999887543 89999999999865432 2222 22345567899999999


Q ss_pred             HHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          215 EQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       215 e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      |.+++    +.+++++++||+.++|+..
T Consensus       158 e~~~~~~~~~~~~~~~i~R~~~i~G~~~  185 (317)
T TIGR01181       158 DHLVRAYHRTYGLPALITRCSNNYGPYQ  185 (317)
T ss_pred             HHHHHHHHHHhCCCeEEEEeccccCCCC
Confidence            98765    4689999999999999864

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.90  E-value=1e-23  Score=178.89  Aligned_cols=150  Identities=24%  Similarity=0.339  Sum_probs=116.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      |+||||||+|+||++|++.|.++|++|+.+.|.                  ..|++| .+++.+.+.. ++|+||||||.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~------------------~~dl~d-~~~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRS------------------DLDLTD-PEAVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT------------------CS-TTS-HHHHHHHHHHH--SEEEE----
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch------------------hcCCCC-HHHHHHHHHHhCCCeEecccee
Confidence            699999999999999999999999999988765                  478888 8888888875 69999999998


Q ss_pred             CC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc
Q 025456          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (252)
Q Consensus       146 ~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (252)
                      ..    +.+++..+.+|+.++.++.++|++.++ ++||+||..||++..+.++.|.. +.+|.+.|+.+|.++|+.+++.
T Consensus        62 ~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~~~~y~E~d-~~~P~~~YG~~K~~~E~~v~~~  139 (286)
T PF04321_consen   62 TNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDKGGPYTEDD-PPNPLNVYGRSKLEGEQAVRAA  139 (286)
T ss_dssp             --HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS-----SSHHHHHHHHHHHHHHHH
T ss_pred             ecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCcccccccCC-CCCCCCHHHHHHHHHHHHHHHh
Confidence            65    235667789999999999999999997 99999999999777666655544 3477899999999999999886


Q ss_pred             CCcEEEEeCCcccCCC
Q 025456          222 GINYTIIRPGGLRNEP  237 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~  237 (252)
                      .-++.++|+++++|+.
T Consensus       140 ~~~~~IlR~~~~~g~~  155 (286)
T PF04321_consen  140 CPNALILRTSWVYGPS  155 (286)
T ss_dssp             -SSEEEEEE-SEESSS
T ss_pred             cCCEEEEecceecccC
Confidence            6699999999999984

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=1.1e-22  Score=172.66  Aligned_cols=175  Identities=19%  Similarity=0.265  Sum_probs=133.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhh------hhccc-------cCCCCeEEEEeeCCCC-----hHH
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKA------KTTLS-------KDNPSLQIVKADVTEG-----SAK  127 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~------~~~~~-------~~~~~~~~i~~Dl~d~-----~~~  127 (252)
                      ++|++||||||+|++++++|+.+- .+|+|++|..+..      ++.+.       ...++++++.+|+..+     ...
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            579999999999999999999874 5999999987632      12121       1347899999999863     345


Q ss_pred             HHHHHcCCCcEEEEcCCCCC-CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcc--------h
Q 025456          128 LSEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPA--------Y  198 (252)
Q Consensus       128 ~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~--------~  198 (252)
                      ..+..+. +|.||||++..+ -....+....|+.||..+++.|...+.|.+.|+||++++.........+.        .
T Consensus        81 ~~~La~~-vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~~~  159 (382)
T COG3320          81 WQELAEN-VDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRN  159 (382)
T ss_pred             HHHHhhh-cceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccccc
Confidence            6666666 999999998544 44455667899999999999999888888999999998654332211111        1


Q ss_pred             hccchhhHHHHHHHHHHHHHHH---cCCcEEEEeCCcccCCCCCCce
Q 025456          199 IFLNVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTGNI  242 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~---~gi~~~~lrPg~i~~~~~~~~~  242 (252)
                      ......+.|++||+.+|.++++   .|++++++|||.|.++..+|.+
T Consensus       160 ~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg~I~gds~tG~~  206 (382)
T COG3320         160 VGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTGAL  206 (382)
T ss_pred             ccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecCeeeccCccCcc
Confidence            1234457899999999999874   5899999999999999886643

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.90  E-value=4.6e-23  Score=176.20  Aligned_cols=151  Identities=19%  Similarity=0.149  Sum_probs=120.6

Q ss_pred             EEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCCCC-
Q 025456           70 FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQP-  147 (252)
Q Consensus        70 lVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~~~-  147 (252)
                      |||||+||||++|++.|+++|++|+++.+.                 ..+|++| .+++.+.+.. ++|+|||+|+... 
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-----------------~~~Dl~~-~~~l~~~~~~~~~d~Vih~A~~~~~   62 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-----------------KELDLTR-QADVEAFFAKEKPTYVILAAAKVGG   62 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc-----------------ccCCCCC-HHHHHHHHhccCCCEEEEeeeeecc
Confidence            699999999999999999999988765432                 1479999 7888888775 4899999998632 


Q ss_pred             ----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchh---ccchhh-HHHHHHHHHHHHHH
Q 025456          148 ----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI---FLNVFG-LTLIAKLQAEQYIR  219 (252)
Q Consensus       148 ----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~---~~~~~~-~y~~sK~~~e~~~~  219 (252)
                          ..++...+++|+.++.+++++|++.++++||++||..+|+.....+.+|...   +..+.. .|+.+|.++|++++
T Consensus        63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~  142 (306)
T PLN02725         63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQ  142 (306)
T ss_pred             cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHHHHHHH
Confidence                1345566789999999999999999999999999999998655555555431   233333 59999999997654


Q ss_pred             ----HcCCcEEEEeCCcccCCCC
Q 025456          220 ----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       220 ----~~gi~~~~lrPg~i~~~~~  238 (252)
                          ..+++++++||+.++|+..
T Consensus       143 ~~~~~~~~~~~~~R~~~vyG~~~  165 (306)
T PLN02725        143 AYRIQYGWDAISGMPTNLYGPHD  165 (306)
T ss_pred             HHHHHhCCCEEEEEecceeCCCC
Confidence                4689999999999999864

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.2e-22  Score=171.53  Aligned_cols=159  Identities=27%  Similarity=0.387  Sum_probs=122.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d~v  139 (252)
                      .++++||||+||||++++++|+++|++|++++|+++..+........++.++++|++| .+++.+.+.      +++|+|
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v   80 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTD-SAAVRAVVDRAFAALGRIDVV   80 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            4789999999999999999999999999999998876554333233578999999999 666665543      138999


Q ss_pred             EEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          140 VCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       140 i~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      |||||.....        +++..+++|+.++.++++++    ++.+.++||++||......            ......|
T Consensus        81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~~~~Y  148 (276)
T PRK06482         81 VSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIA------------YPGFSLY  148 (276)
T ss_pred             EECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccC------------CCCCchh
Confidence            9999975421        23345779999999999997    5667789999999753211            1134689


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +.+|++.|.+++       .+|++++++|||.+.++.
T Consensus       149 ~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~  185 (276)
T PRK06482        149 HATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNF  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCC
Confidence            999999987664       258999999999986654

>PRK06182 short chain dehydrogenase; Validated

Probab=99.89  E-value=2.3e-22  Score=169.57  Aligned_cols=158  Identities=25%  Similarity=0.350  Sum_probs=121.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCCcE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDSEA  138 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d~  138 (252)
                      ++++++||||+|+||++++++|+++|++|++++|+.++.++...   .+++++.+|++| .+++.+.+.      +++|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~---~~~~~~~~Dv~~-~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS---LGVHPLSLDVTD-EASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---CCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCE
Confidence            47899999999999999999999999999999999876654332   358899999999 777766654      13999


Q ss_pred             EEEcCCCCCCC--------CCCCcceehHHHHHH----HHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPGW--------DLFAPWKVDNFGTVN----LVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~~--------~~~~~~~~n~~g~~~----ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ||||||.....        +++..+++|+.++.+    +++.+++.+.++||++||......            ......
T Consensus        78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~------------~~~~~~  145 (273)
T PRK06182         78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIY------------TPLGAW  145 (273)
T ss_pred             EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCC------------CCCccH
Confidence            99999975421        244567899988544    455667777789999999743211            112356


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |+.+|++.+.+.+       +.|+++++++||++.++..
T Consensus       146 Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~  184 (273)
T PRK06182        146 YHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWG  184 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccc
Confidence            8999999987643       3689999999999998753

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.89  E-value=1.3e-22  Score=168.19  Aligned_cols=149  Identities=25%  Similarity=0.301  Sum_probs=130.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQ  146 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~~  146 (252)
                      ++||||++|.+|.+|++.|. .+++|+.++|..                  +|++| .+.+.+.+.. ++|+|||+|++.
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~------------------~Ditd-~~~v~~~i~~~~PDvVIn~AAyt   61 (281)
T COG1091           2 KILITGANGQLGTELRRALP-GEFEVIATDRAE------------------LDITD-PDAVLEVIRETRPDVVINAAAYT   61 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc------------------ccccC-hHHHHHHHHhhCCCEEEECcccc
Confidence            49999999999999999998 678999887752                  79999 8999999987 699999999986


Q ss_pred             C----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcC
Q 025456          147 P----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG  222 (252)
Q Consensus       147 ~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~g  222 (252)
                      .    +.+++..+.+|..|+.++.++|++.|. ++||+||-+|+.+..+.++.|.+ +.+|.+.|+++|.+.|+.++..+
T Consensus        62 ~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D-~~~P~nvYG~sKl~GE~~v~~~~  139 (281)
T COG1091          62 AVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETD-TPNPLNVYGRSKLAGEEAVRAAG  139 (281)
T ss_pred             ccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEecCCCCCCCCCCC-CCCChhhhhHHHHHHHHHHHHhC
Confidence            5    344566789999999999999999997 99999999999777666666654 45788999999999999999999


Q ss_pred             CcEEEEeCCcccCCCC
Q 025456          223 INYTIIRPGGLRNEPP  238 (252)
Q Consensus       223 i~~~~lrPg~i~~~~~  238 (252)
                      -+..++|.+++++..+
T Consensus       140 ~~~~I~Rtswv~g~~g  155 (281)
T COG1091         140 PRHLILRTSWVYGEYG  155 (281)
T ss_pred             CCEEEEEeeeeecCCC
Confidence            9999999999999865

>PLN02996 fatty acyl-CoA reductase

Probab=99.89  E-value=1.1e-22  Score=184.35  Aligned_cols=174  Identities=19%  Similarity=0.207  Sum_probs=129.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC---CeEEEeecCchhhh-------hccc------------c-----CCCCeEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAK-------TTLS------------K-----DNPSLQI  116 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~-------~~~~------------~-----~~~~~~~  116 (252)
                      .++++|+|||||||||++|++.|++.+   .+|+++.|..+...       +...            .     ...++++
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            468999999999999999999999864   36899999754211       1100            0     0157899


Q ss_pred             EEeeCCCC------hHHHHHHHcCCCcEEEEcCCCCC-CCCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceeecc
Q 025456          117 VKADVTEG------SAKLSEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGA  188 (252)
Q Consensus       117 i~~Dl~d~------~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~~~  188 (252)
                      +.+|++++      .+.+.+++.+ +|+|||+|+... ..+....+++|+.|+.+++++|++. ++++||++||.++||.
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~~-vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~  167 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWKE-IDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGE  167 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHhC-CCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecC
Confidence            99999842      3446677777 999999998654 2345566789999999999999985 6889999999999986


Q ss_pred             CCCC----CCCcch----------------------------------------------hccchhhHHHHHHHHHHHHH
Q 025456          189 AMGQ----ILNPAY----------------------------------------------IFLNVFGLTLIAKLQAEQYI  218 (252)
Q Consensus       189 ~~~~----~~~~~~----------------------------------------------~~~~~~~~y~~sK~~~e~~~  218 (252)
                      ..+.    ++.+..                                              ....+.+.|+.+|+++|+++
T Consensus       168 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv  247 (491)
T PLN02996        168 KSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEMLL  247 (491)
T ss_pred             CCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHHHH
Confidence            4321    111000                                              00112356999999999998


Q ss_pred             HH--cCCcEEEEeCCcccCCCC
Q 025456          219 RK--SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       219 ~~--~gi~~~~lrPg~i~~~~~  238 (252)
                      ++  .+++++++||++|+|+..
T Consensus       248 ~~~~~~lpv~i~RP~~V~G~~~  269 (491)
T PLN02996        248 GNFKENLPLVIIRPTMITSTYK  269 (491)
T ss_pred             HHhcCCCCEEEECCCEeccCCc
Confidence            75  489999999999999754

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.89  E-value=3.8e-22  Score=168.64  Aligned_cols=157  Identities=22%  Similarity=0.314  Sum_probs=121.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-------CCCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~~~d~  138 (252)
                      +++++||||+|+||++++++|+++|++|++++|+++..+....   .+++++.+|++| .+++.+++.       +++|+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~---~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA---EGLEAFQLDYAE-PESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---CCceEEEccCCC-HHHHHHHHHHHHHHcCCCccE
Confidence            6899999999999999999999999999999999876654332   358889999999 666655443       24899


Q ss_pred             EEEcCCCCCCC--------CCCCcceehHHH----HHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPGW--------DLFAPWKVDNFG----TVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~~--------~~~~~~~~n~~g----~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ||||||.....        +++..+++|+.|    +..+++.+++.+.++||++||...+..            ......
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~------------~~~~~~  147 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVP------------MKYRGA  147 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCC------------CCccch
Confidence            99999875422        233467899999    555666677777789999999754321            123467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |+.+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       148 Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~  186 (277)
T PRK05993        148 YNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFR  186 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchh
Confidence            9999999998754       4699999999999988753

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.89  E-value=3.8e-22  Score=171.72  Aligned_cols=169  Identities=25%  Similarity=0.347  Sum_probs=130.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag  144 (252)
                      +|+||||+|+||++++++|+++|++|++++|...........  ...+++++.+|+++ .+++.+++.. ++|+||||||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~d~vv~~ag   79 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRD-RELLDRLFEEHKIDAVIHFAG   79 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCC-HHHHHHHHHhCCCcEEEECcc
Confidence            589999999999999999999999999876543221111110  11257788999999 8888888863 4999999998


Q ss_pred             CCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH
Q 025456          145 FQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       145 ~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      ....    .+..+.++.|+.++.+++++|++.+++++|++||..+|+.....+..+. .+..+...|+.+|.++|.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~-~~~~~~~~y~~sK~~~e~~~~~  158 (328)
T TIGR01179        80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISED-SPLGPINPYGRSKLMSERILRD  158 (328)
T ss_pred             ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCcccc-CCCCCCCchHHHHHHHHHHHHH
Confidence            6432    2445667899999999999999999889999999999876543333333 2344667899999999987753


Q ss_pred             -----cCCcEEEEeCCcccCCCC
Q 025456          221 -----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       221 -----~gi~~~~lrPg~i~~~~~  238 (252)
                           .+++++++||+.++|+..
T Consensus       159 ~~~~~~~~~~~ilR~~~v~g~~~  181 (328)
T TIGR01179       159 LSKADPGLSYVILRYFNVAGADP  181 (328)
T ss_pred             HHHhccCCCEEEEecCcccCCCC
Confidence                 689999999999999854

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.1e-22  Score=169.94  Aligned_cols=161  Identities=26%  Similarity=0.285  Sum_probs=124.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      ++++|+||||+|+||++++++|+++|++|++++|+.+..+.........+.++++|++| .+++.+.+..      .+|+
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d~   80 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTD-RAAVFAAVETAVEHFGRLDI   80 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999999999999999876654333233568889999999 6666555432      3899


Q ss_pred             EEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ||||+|....        .++++.+++|+.++.++++.+    ++.+.+++|++||...+...            .....
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~------------~~~~~  148 (275)
T PRK08263         81 VVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAF------------PMSGI  148 (275)
T ss_pred             EEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCC------------CCccH
Confidence            9999997542        234456789999988887775    56677899999998654322            12367


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |+.+|++.+.+.+       .+|+++++++||.+.++..
T Consensus       149 Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~  187 (275)
T PRK08263        149 YHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWA  187 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCcc
Confidence            9999999876653       3689999999999988764

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.3e-22  Score=188.93  Aligned_cols=171  Identities=26%  Similarity=0.304  Sum_probs=129.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHH--HCCCeEEEeecCchhh--hhcccc-CCCCeEEEEeeCCCC-----hHHHHHHHcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLL--AKGFAVKAGVRDLDKA--KTTLSK-DNPSLQIVKADVTEG-----SAKLSEAIGDDS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~--~~G~~V~~~~r~~~~~--~~~~~~-~~~~~~~i~~Dl~d~-----~~~~~~~~~~~~  136 (252)
                      |+|+|||||||||++|+++|+  ++|++|++++|+....  ...... ...+++++.+|++|+     .+.+.++ .+ +
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~-~   78 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-GD-I   78 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-cC-C
Confidence            479999999999999999999  5799999999975332  111111 125789999999983     1334444 66 9


Q ss_pred             cEEEEcCCCCCC-CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcch--hccchhhHHHHHHHH
Q 025456          137 EAVVCATGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY--IFLNVFGLTLIAKLQ  213 (252)
Q Consensus       137 d~vi~~ag~~~~-~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~--~~~~~~~~y~~sK~~  213 (252)
                      |+|||||+.... .+.....++|+.++.+++++|++.++++||++||..+||...+. ..+..  .+.++...|+.+|.+
T Consensus        79 D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~~-~~e~~~~~~~~~~~~Y~~sK~~  157 (657)
T PRK07201         79 DHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEGV-FREDDFDEGQGLPTPYHRTKFE  157 (657)
T ss_pred             CEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccCc-cccccchhhcCCCCchHHHHHH
Confidence            999999986442 23345678999999999999999999999999999999764332 12211  122334679999999


Q ss_pred             HHHHHHH-cCCcEEEEeCCcccCCCCCC
Q 025456          214 AEQYIRK-SGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       214 ~e~~~~~-~gi~~~~lrPg~i~~~~~~~  240 (252)
                      +|+++++ .+++++++||+.++|+...+
T Consensus       158 ~E~~~~~~~g~~~~ilRp~~v~G~~~~g  185 (657)
T PRK07201        158 AEKLVREECGLPWRVYRPAVVVGDSRTG  185 (657)
T ss_pred             HHHHHHHcCCCcEEEEcCCeeeecCCCC
Confidence            9999874 68999999999999976543

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.2e-21  Score=164.84  Aligned_cols=156  Identities=25%  Similarity=0.372  Sum_probs=123.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      ++++++||||+|+||++++++|+++|++|++++|+++....     ..+++++++|++| .+++.+++.+      ++|+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~~d~   76 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP-----IPGVELLELDVTD-DASVQAAVDEVIARAGRIDV   76 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-----cCCCeeEEeecCC-HHHHHHHHHHHHHhCCCCCE
Confidence            36899999999999999999999999999999998765432     2468899999999 7777766642      3899


Q ss_pred             EEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ||||||.....        +++..+++|+.|+.++++++    ++.+.++||++||...+...            .....
T Consensus        77 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~~  144 (270)
T PRK06179         77 LVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPA------------PYMAL  144 (270)
T ss_pred             EEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCC------------CCccH
Confidence            99999975421        23456789999988888874    66777899999997544221            12467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |+.+|.+.+.+++       +.|+++++++||++.++..
T Consensus       145 Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~  183 (270)
T PRK06179        145 YAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD  183 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence            9999999887654       3699999999999988754

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.88  E-value=3.6e-22  Score=167.63  Aligned_cols=162  Identities=20%  Similarity=0.286  Sum_probs=122.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++....    ...++.++.+|++| .+++.+++.     
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~   83 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK-REDLERTVKELKNI   83 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHHHhh
Confidence            35689999999999999999999999999999999987665432211    13468899999999 666666554     


Q ss_pred             CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      +++|++|||+|....        .+|+..+++|+.+...+++++    ++.+.+++|++||...+..            .
T Consensus        84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~------------~  151 (263)
T PRK08339         84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEP------------I  151 (263)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCC------------C
Confidence            249999999986431        235566889988866665554    5566679999999864321            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+..|..+|.+.+.+.+       +.|+++++|.||.+.++.
T Consensus       152 ~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~  194 (263)
T PRK08339        152 PNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDR  194 (263)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHH
Confidence            124568889998887654       368999999999998874

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.88  E-value=3.3e-22  Score=171.57  Aligned_cols=163  Identities=16%  Similarity=0.143  Sum_probs=121.9

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc---CCCcEEEEcCC
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG---DDSEAVVCATG  144 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~---~~~d~vi~~ag  144 (252)
                      |+||||+||||+++++.|+++|+ +|+++.|..... . +. . .....+..|+.+ .+.++.+..   .++|+|||+|+
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~-~~-~-~~~~~~~~d~~~-~~~~~~~~~~~~~~~D~vvh~A~   75 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-K-FL-N-LADLVIADYIDK-EDFLDRLEKGAFGKIEAIFHQGA   75 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-h-hh-h-hhheeeeccCcc-hhHHHHHHhhccCCCCEEEECcc
Confidence            68999999999999999999997 788877654321 1 11 0 111345678877 666665553   23999999998


Q ss_pred             CCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH--
Q 025456          145 FQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK--  220 (252)
Q Consensus       145 ~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~--  220 (252)
                      ...  ..++...+++|+.++.+++++|++.++ +||++||.++|+.... +..+...+.++.+.|+.+|..+|+++++  
T Consensus        76 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~-~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~  153 (314)
T TIGR02197        76 CSDTTETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEA-GFREGRELERPLNVYGYSKFLFDQYVRRRV  153 (314)
T ss_pred             ccCccccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCC-CcccccCcCCCCCHHHHHHHHHHHHHHHHh
Confidence            643  234556678999999999999999887 8999999999986532 3333333345677899999999988764  


Q ss_pred             ----cCCcEEEEeCCcccCCCC
Q 025456          221 ----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       221 ----~gi~~~~lrPg~i~~~~~  238 (252)
                          .+++++++||+.++|+..
T Consensus       154 ~~~~~~~~~~~lR~~~vyG~~~  175 (314)
T TIGR02197       154 LPEALSAQVVGLRYFNVYGPRE  175 (314)
T ss_pred             HhhccCCceEEEEEeeccCCCC
Confidence                257999999999999864

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK05717 oxidoreductase; Validated

Probab=99.88  E-value=3.8e-22  Score=166.49  Aligned_cols=164  Identities=16%  Similarity=0.202  Sum_probs=123.5

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      ..+++|+++||||+|+||++++++|+++|++|++++|+.++..+.......++.++++|++| .+++.+++..      +
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVAD-EAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHhCC
Confidence            45678999999999999999999999999999999888765543322223468899999999 6666544332      4


Q ss_pred             CcEEEEcCCCCCCC----------CCCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          136 SEAVVCATGFQPGW----------DLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       136 ~d~vi~~ag~~~~~----------~~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      +|+||||||.....          +++..+++|+.++.++++++..   ...+++|++||...+...            .
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~------------~  152 (255)
T PRK05717         85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSE------------P  152 (255)
T ss_pred             CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCC------------C
Confidence            89999999975321          2345678999999999999853   223689999987543211            1


Q ss_pred             hhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|++.+.+++.      .++++++++||.+.++..
T Consensus       153 ~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~  194 (255)
T PRK05717        153 DTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDP  194 (255)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCcc
Confidence            235699999999877652      259999999999998753

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.88  E-value=1.7e-22  Score=168.50  Aligned_cols=153  Identities=26%  Similarity=0.359  Sum_probs=113.4

Q ss_pred             EEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhcccc-----CCCCeE----EEEeeCCCChHHHHHHHcC-CCc
Q 025456           69 IFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSK-----DNPSLQ----IVKADVTEGSAKLSEAIGD-DSE  137 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~-----~~~~~~----~i~~Dl~d~~~~~~~~~~~-~~d  137 (252)
                      ||||||+|.||++|+++|++.+ .++++++|++.........     ...++.    .+.+|++| .+.+.+++.. ++|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd-~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRD-KERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCH-HHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccC-HHHHHHHHhhcCCC
Confidence            7999999999999999999987 5799999998766432211     123443    35789999 8999999983 499


Q ss_pred             EEEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHH
Q 025456          138 AVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ  213 (252)
Q Consensus       138 ~vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~  213 (252)
                      +|||+|+..+    +.++.+.+++|+.||.|++++|.++++++||++||.-               ..+|.+.||++|..
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDK---------------Av~PtnvmGatKrl  144 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDK---------------AVNPTNVMGATKRL  144 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECG---------------CSS--SHHHHHHHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc---------------cCCCCcHHHHHHHH
Confidence            9999999876    5678888999999999999999999999999999852               23567889999999


Q ss_pred             HHHHHHHc-------CCcEEEEeCCcccCCC
Q 025456          214 AEQYIRKS-------GINYTIIRPGGLRNEP  237 (252)
Q Consensus       214 ~e~~~~~~-------gi~~~~lrPg~i~~~~  237 (252)
                      +|.++...       +.+++++|.|+|.+..
T Consensus       145 aE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~  175 (293)
T PF02719_consen  145 AEKLVQAANQYSGNSDTKFSSVRFGNVLGSR  175 (293)
T ss_dssp             HHHHHHHHCCTSSSS--EEEEEEE-EETTGT
T ss_pred             HHHHHHHHhhhCCCCCcEEEEEEecceecCC
Confidence            99988642       4689999999999854

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.88  E-value=6.3e-22  Score=164.98  Aligned_cols=162  Identities=15%  Similarity=0.181  Sum_probs=122.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      +++|+++||||+++||++++++|+++|++|++++|+... ..+.+.....++.++.+|++| .+++.+++..      ++
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~i   84 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQ-QKDIDSIVSQAVEVMGHI   84 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC-HHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999998886432 222222234568899999999 7766665541      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |++|||||....        .+|+..+++|+.++..+++++.    +.+ .++||++||...+....            .
T Consensus        85 D~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------------~  152 (251)
T PRK12481         85 DILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGI------------R  152 (251)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCC------------C
Confidence            999999997432        2466778999999988887763    333 36999999986543211            1


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|..+|++.+.+.+       ++|+++++|+||.+.++..
T Consensus       153 ~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~  194 (251)
T PRK12481        153 VPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNT  194 (251)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCch
Confidence            3468899999887664       3689999999999988753

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.88  E-value=8.9e-22  Score=160.15  Aligned_cols=169  Identities=20%  Similarity=0.279  Sum_probs=138.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ...++++|+||||.||||+|||+.|..+|++|++++---+..+..+..  ...+++.+..|+..      ..+.+ +|.|
T Consensus        23 ~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~------pl~~e-vD~I   95 (350)
T KOG1429|consen   23 KPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVE------PLLKE-VDQI   95 (350)
T ss_pred             cCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeechh------HHHHH-hhhh
Confidence            445679999999999999999999999999999988765555443321  34678888888876      36677 9999


Q ss_pred             EEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcch----hccchhhHHHHHH
Q 025456          140 VCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAK  211 (252)
Q Consensus       140 i~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~----~~~~~~~~y~~sK  211 (252)
                      +|+|+...    ..++..++..|..++.+++-.|++-+ +||++.||..|||+....|..+.+    .+..+...|...|
T Consensus        96 yhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegK  174 (350)
T KOG1429|consen   96 YHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGK  174 (350)
T ss_pred             hhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHH
Confidence            99987654    35677889999999999999999999 599999999999997766655544    3456678899999


Q ss_pred             HHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          212 LQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       212 ~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..+|.+..    +.|+.+.|.|+.++|||..
T Consensus       175 r~aE~L~~~y~k~~giE~rIaRifNtyGPrm  205 (350)
T KOG1429|consen  175 RVAETLCYAYHKQEGIEVRIARIFNTYGPRM  205 (350)
T ss_pred             HHHHHHHHHhhcccCcEEEEEeeecccCCcc
Confidence            99998764    5799999999999999864

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.88  E-value=6.9e-22  Score=172.51  Aligned_cols=172  Identities=21%  Similarity=0.260  Sum_probs=127.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhh------hhcccc-------CC-CCeEEEEeeCCCC-----hH
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKA------KTTLSK-------DN-PSLQIVKADVTEG-----SA  126 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~------~~~~~~-------~~-~~~~~i~~Dl~d~-----~~  126 (252)
                      +|+|||||||||++++++|+++|  ++|++++|+.+..      .+.+..       .. .+++++.+|++++     .+
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58999999999999999999998  6799999986522      111110       01 4799999999862     24


Q ss_pred             HHHHHHcCCCcEEEEcCCCCCC-CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcch----hcc
Q 025456          127 KLSEAIGDDSEAVVCATGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFL  201 (252)
Q Consensus       127 ~~~~~~~~~~d~vi~~ag~~~~-~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~----~~~  201 (252)
                      ...+...+ +|+|||||+.... .......++|+.++.+++++|.+.++++|+++||.++|+.....+..+..    ...
T Consensus        81 ~~~~~~~~-~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~~~  159 (367)
T TIGR01746        81 EWERLAEN-VDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTPPP  159 (367)
T ss_pred             HHHHHHhh-CCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccccccc
Confidence            55666667 9999999986542 23344567999999999999999988889999999998754222111111    112


Q ss_pred             chhhHHHHHHHHHHHHHHH---cCCcEEEEeCCcccCCCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~---~gi~~~~lrPg~i~~~~~~~  240 (252)
                      .+...|+.+|+.+|.++++   .|++++++|||.++|+...+
T Consensus       160 ~~~~~Y~~sK~~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~g  201 (367)
T TIGR01746       160 GLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRILGNSYTG  201 (367)
T ss_pred             ccCCChHHHHHHHHHHHHHHHhcCCCEEEECCCceeecCCCC
Confidence            2345799999999988764   48999999999999975433

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.3e-21  Score=168.27  Aligned_cols=174  Identities=18%  Similarity=0.178  Sum_probs=125.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ++++++++||||++|||.+++++|+++|++|++++|+.++.++...   .  ...++.++++|++| .+++++++..   
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d-~~sv~~~~~~~~~   89 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS-LASVAALGEQLRA   89 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC-HHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999998776543221   1  12468899999999 7776655432   


Q ss_pred             ---CCcEEEEcCCCCCC-------CCCCCcceehHHHHHHHHHHHH---hcCCCEEEEEccceeeccCC-CCCCCcchhc
Q 025456          135 ---DSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACR---KRGVNRFILISSILVNGAAM-GQILNPAYIF  200 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~-------~~~~~~~~~n~~g~~~ll~~~~---~~~~~~~v~~SS~~v~~~~~-~~~~~~~~~~  200 (252)
                         ++|++|||||+...       ++++..+.+|+.|.+.+++.+.   +.+.+++|++||...+.... ...... ...
T Consensus        90 ~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~-~~~  168 (313)
T PRK05854         90 EGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNW-ERS  168 (313)
T ss_pred             hCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccccc-ccc
Confidence               49999999996431       2345568999999888777763   22346899999976432211 111111 112


Q ss_pred             cchhhHHHHHHHHHHHHHHH---------cCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIRK---------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~---------~gi~~~~lrPg~i~~~~~  238 (252)
                      ..++..|+.+|.+.+.+.+.         .|++++++.||.+.++..
T Consensus       169 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~  215 (313)
T PRK05854        169 YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLL  215 (313)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCcc
Confidence            34567899999988765531         379999999999988754

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.88  E-value=8.9e-22  Score=164.61  Aligned_cols=160  Identities=20%  Similarity=0.162  Sum_probs=117.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh--hccccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--TTLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      .+++|+++||||+||||++++++|+++|++|++++|+....+  +.+.....++.++.+|++| .+++.+++..      
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLET-YAGAQAAMAAAVEAFG   83 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC-HHHHHHHHHHHHHHcC
Confidence            356899999999999999999999999999999999753211  1121123467889999999 6665554431      


Q ss_pred             CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||||....         .+++..+++|+.++.++++.+    ++.+.++||++||...++.             
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-------------  150 (260)
T PRK12823         84 RIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI-------------  150 (260)
T ss_pred             CCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-------------
Confidence            49999999985321         123345688998877655544    5566679999999865431             


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       ....|+.+|++.+.+.+       ..|+++++|+||++++++
T Consensus       151 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  192 (260)
T PRK12823        151 -NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPP  192 (260)
T ss_pred             -CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcc
Confidence             12468899999987664       248999999999999974

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.6e-21  Score=167.05  Aligned_cols=175  Identities=19%  Similarity=0.127  Sum_probs=122.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---cc--CCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SK--DNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~--~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ++++++|+||||+||||++++++|+++|++|++++|+.+...+..   ..  ...++.++.+|++| .+++.+++..   
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~   91 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS-LASVRAAADALRA   91 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHh
Confidence            346899999999999999999999999999999999876543211   11  13468899999999 7766655431   


Q ss_pred             ---CCcEEEEcCCCCC------CCCCCCcceehHHH----HHHHHHHHHhcCCCEEEEEccceeeccC-CCCCCCcchhc
Q 025456          135 ---DSEAVVCATGFQP------GWDLFAPWKVDNFG----TVNLVEACRKRGVNRFILISSILVNGAA-MGQILNPAYIF  200 (252)
Q Consensus       135 ---~~d~vi~~ag~~~------~~~~~~~~~~n~~g----~~~ll~~~~~~~~~~~v~~SS~~v~~~~-~~~~~~~~~~~  200 (252)
                         ++|+||||||...      ..+++..+++|+.|    +..+++.+++.+.++||++||...+... ..........+
T Consensus        92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~  171 (306)
T PRK06197         92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWERR  171 (306)
T ss_pred             hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCcccC
Confidence               4999999998643      13455678999999    4555666666666799999998643211 10000000112


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEE--EeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTI--IRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~--lrPg~i~~~~~  238 (252)
                      ..+...|+.+|++.+.+.+       ..++++++  +.||.+.++..
T Consensus       172 ~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~  218 (306)
T PRK06197        172 YNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELA  218 (306)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCccc
Confidence            3456789999998887654       24666655  47999988764

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.88  E-value=6.9e-22  Score=165.37  Aligned_cols=161  Identities=22%  Similarity=0.198  Sum_probs=123.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..++...   .  ...++.++++|++| .+++.+++..    
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   83 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD-AASVAAAVAAAEEA   83 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999998766543221   1  23468889999999 6666655541    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||||....        .+++..+++|+.++.++++++.    +.+.++||++||...+..            
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------  151 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKI------------  151 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccC------------
Confidence              49999999996432        2345668899999988888863    445579999999754321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ......|..+|++.+.+.+       +.|+++++|+||.+.++.
T Consensus       152 ~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~  195 (260)
T PRK07063        152 IPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQL  195 (260)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChh
Confidence            1224579999999887764       258999999999998875

>PLN02253 xanthoxin dehydrogenase

Probab=99.88  E-value=1e-21  Score=166.07  Aligned_cols=161  Identities=17%  Similarity=0.150  Sum_probs=122.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++....  ...++.++++|++| .+++.+++.      +
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV-EDDVSRAVDFTVDKFG   93 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC-HHHHHHHHHHHHHHhC
Confidence            45689999999999999999999999999999999886554332211  23468899999999 777776664      1


Q ss_pred             CCcEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEcccee-eccCCCCCCCcchh
Q 025456          135 DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILV-NGAAMGQILNPAYI  199 (252)
Q Consensus       135 ~~d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v-~~~~~~~~~~~~~~  199 (252)
                      ++|+||||||....          .+++..+++|+.++.++++++..    .+.+++|++||... ++.           
T Consensus        94 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-----------  162 (280)
T PLN02253         94 TLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG-----------  162 (280)
T ss_pred             CCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC-----------
Confidence            49999999986421          12345689999999998887742    34468999988643 211           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        .....|+.+|++.|.+.+       ..|+++++++||.+.++.
T Consensus       163 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~  205 (280)
T PLN02253        163 --LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTAL  205 (280)
T ss_pred             --CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccc
Confidence              112468999999987764       248999999999998864

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=5.5e-22  Score=164.76  Aligned_cols=164  Identities=20%  Similarity=0.293  Sum_probs=121.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc----cccCCC-CeEEEEeeCCCChHHHHHHH-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT----LSKDNP-SLQIVKADVTEGSAKLSEAI-----  132 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~-~~~~i~~Dl~d~~~~~~~~~-----  132 (252)
                      ++++|+|+|||||+|||.+++.+|+++|.+++.++|...+++..    .+.... ++.++++|++| .+++.+++     
T Consensus         9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~-~~~~~~~~~~~~~   87 (282)
T KOG1205|consen    9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD-EESVKKFVEWAIR   87 (282)
T ss_pred             HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC-HHHHHHHHHHHHH
Confidence            45789999999999999999999999999888888776555432    111222 59999999999 77777554     


Q ss_pred             --cCCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       133 --~~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                        ++ +|++|||||+...        .+....+++|+.|+..+.+++    ++.+-++||.+||+..+-..         
T Consensus        88 ~fg~-vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~---------  157 (282)
T KOG1205|consen   88 HFGR-VDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPL---------  157 (282)
T ss_pred             hcCC-CCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCC---------
Confidence              34 9999999998652        123356899999988877776    56666799999999643211         


Q ss_pred             hccchhhHHHHHHHHHHHHHH---H----cC--CcEEEEeCCcccCCCCCCc
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR---K----SG--INYTIIRPGGLRNEPPTGN  241 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~---~----~g--i~~~~lrPg~i~~~~~~~~  241 (252)
                         .....|.+||++.+.+.+   .    .+  +.+ ++.||.|.+......
T Consensus       158 ---P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~~  205 (282)
T KOG1205|consen  158 ---PFRSIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGKE  205 (282)
T ss_pred             ---CcccccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccchh
Confidence               122478899999987753   1    23  333 699999999855433

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.88  E-value=7.6e-22  Score=165.40  Aligned_cols=161  Identities=20%  Similarity=0.205  Sum_probs=122.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.+..++.......++.++++|++| .+++.+++..      ++|
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id   82 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITD-DAAIERAVATVVARFGRVD   82 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence            458999999999999999999999999999999998766554333233568899999999 6666655542      489


Q ss_pred             EEEEcCCCCCC-------CCCCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          138 AVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       138 ~vi~~ag~~~~-------~~~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      +||||||....       .++++.+++|+.++.++++++..   .+.++||++||.......            .....|
T Consensus        83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~~~~~Y  150 (261)
T PRK08265         83 ILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ------------TGRWLY  150 (261)
T ss_pred             EEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC------------CCCchh
Confidence            99999996431       13445678999999988887642   334689999997542111            124578


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+|.+.+.+.+       +.|+++++|+||.+.++.
T Consensus       151 ~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~  187 (261)
T PRK08265        151 PASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRV  187 (261)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChh
Confidence            999999887664       258999999999998875

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.88  E-value=4.9e-22  Score=165.79  Aligned_cols=163  Identities=20%  Similarity=0.203  Sum_probs=124.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|++++.++..   ...+.++.++++|++| .+++.+++.+     
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   85 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD-HDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC-HHHHHHHHHHHHHhc
Confidence            356899999999999999999999999999999999876554322   2123458889999999 7777666542     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||+|.....        +++..+++|+.++.++++++.+    .+.++||++||...+..            .
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------------~  153 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALA------------R  153 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccC------------C
Confidence             389999999875321        2345577999999999998853    35679999999743211            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..+..|+.+|.+.+.+.+       ++|+++++++||.+.++..
T Consensus       154 ~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~  197 (255)
T PRK07523        154 PGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLN  197 (255)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchh
Confidence            235678999999887654       4689999999999998853

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.88  E-value=1e-21  Score=173.87  Aligned_cols=160  Identities=24%  Similarity=0.316  Sum_probs=135.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhc---ccc--CCCCeEEEEeeCCCChHHHHHHHcC-C
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTT---LSK--DNPSLQIVKADVTEGSAKLSEAIGD-D  135 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~---~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~-~  135 (252)
                      ..++|+|+||||+|-||+++++++++.+ .++++++|++.+....   +..  ...++.++-+|+.| .+.+.+++.+ +
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD-~~~~~~~~~~~k  325 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRD-RDRVERAMEGHK  325 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEeccccc-HHHHHHHHhcCC
Confidence            4679999999999999999999999986 5788889987665331   211  23678899999999 8999999988 8


Q ss_pred             CcEEEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHH
Q 025456          136 SEAVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (252)
Q Consensus       136 ~d~vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (252)
                      +|+|||+|+..+    +.++.+.+++|+.||+|++++|.+.++++||++||.-               ..+|.+.||.+|
T Consensus       326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDK---------------AV~PtNvmGaTK  390 (588)
T COG1086         326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDK---------------AVNPTNVMGATK  390 (588)
T ss_pred             CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCc---------------ccCCchHhhHHH
Confidence            999999999765    5788899999999999999999999999999999852               246678899999


Q ss_pred             HHHHHHHHHc-------CCcEEEEeCCcccCCCC
Q 025456          212 LQAEQYIRKS-------GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       212 ~~~e~~~~~~-------gi~~~~lrPg~i~~~~~  238 (252)
                      ..+|.++...       +-+++++|.|||.|..+
T Consensus       391 r~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG  424 (588)
T COG1086         391 RLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG  424 (588)
T ss_pred             HHHHHHHHHHhhccCCCCcEEEEEEecceecCCC
Confidence            9999887531       47899999999999653

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.88  E-value=9.2e-22  Score=165.79  Aligned_cols=161  Identities=18%  Similarity=0.167  Sum_probs=121.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++++++||||+|+||++++++|+++|++|++.+|+++..+...... .++.++.+|++| .+++.+.+..      ++|
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   80 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL-GLVVGGPLDVTD-PASFAAFLDAVEADLGPID   80 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-ccceEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            45789999999999999999999999999999999887665432211 257889999999 6665544432      389


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      ++|||+|.....        ++...+++|+.|+.++++.+    ++.+.++||++||...+...            ....
T Consensus        81 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~  148 (273)
T PRK07825         81 VLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPV------------PGMA  148 (273)
T ss_pred             EEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCC------------CCCc
Confidence            999999975421        23345789999988876665    55677899999998643211            2246


Q ss_pred             HHHHHHHHHHHHH-------HHcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~-------~~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|..+|++.+.+.       ++.|+++++|+||.+.++..
T Consensus       149 ~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~  188 (273)
T PRK07825        149 TYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELI  188 (273)
T ss_pred             chHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhh
Confidence            7889998776554       24699999999999988754

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.87  E-value=8.6e-22  Score=164.61  Aligned_cols=159  Identities=20%  Similarity=0.299  Sum_probs=120.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+||||+|+||.+++++|+++|++|++++|+.+..++....  ...++.++.+|++| .+++.++++.      ++|
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~g~id   80 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRD-ADALAAAAADFIAAHGLPD   80 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC-HHHHHHHHHHHHHhCCCCC
Confidence            57999999999999999999999999999999987765443221  11268899999999 7777665532      389


Q ss_pred             EEEEcCCCCCCC---------CCCCcceehHHHHHHHHH----HHHhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          138 AVVCATGFQPGW---------DLFAPWKVDNFGTVNLVE----ACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       138 ~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~----~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      +||||+|.....         +++..+++|+.|+.++++    .+++.+.++||++||...+...            ...
T Consensus        81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~------------~~~  148 (257)
T PRK07024         81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGL------------PGA  148 (257)
T ss_pred             EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC------------CCC
Confidence            999999864321         233457899999988776    4566667899999997543211            123


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+.+       +.|+++++++||.+.++.
T Consensus       149 ~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~  188 (257)
T PRK07024        149 GAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPM  188 (257)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCch
Confidence            568999999987663       358999999999998875

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.87  E-value=7.5e-22  Score=165.01  Aligned_cols=161  Identities=22%  Similarity=0.193  Sum_probs=120.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+++..++..   .+...++.++++|++| .+++.+++..      
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN-EDAVNAGIDKVAERFG   83 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            45899999999999999999999999999999999886544322   2223467889999999 7766655442      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHH----HHHHHHHH-HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFG----TVNLVEAC-RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g----~~~ll~~~-~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||+|....        .+++..+++|+.+    +.++++.+ ++.+.++||++||...+..            .
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~------------~  151 (262)
T PRK13394         84 SVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEA------------S  151 (262)
T ss_pred             CCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCC------------C
Confidence            38999999997532        1234556799999    55666666 6667789999999754321            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|.+.+.+++       ..++++++++||.++++.
T Consensus       152 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~  194 (262)
T PRK13394        152 PLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPL  194 (262)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchh
Confidence            123567888888776654       258999999999999875

>PRK06128 oxidoreductase; Provisional

Probab=99.87  E-value=1.3e-21  Score=167.28  Aligned_cols=163  Identities=14%  Similarity=0.168  Sum_probs=123.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh--hh---hccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AK---TTLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--~~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .+++|+++||||+|+||++++++|+++|++|++..++.+.  .+   +.+.....++.++.+|++| .+++.+++..   
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~  130 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD-EAFCRQLVERAVK  130 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHHHH
Confidence            3568999999999999999999999999999987765432  11   1222233467889999999 6666655431   


Q ss_pred             ---CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 ---DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                         ++|+||||||....         .+++..+++|+.++.++++++...  .-++||++||...|...           
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~-----------  199 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS-----------  199 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC-----------
Confidence               39999999996421         235567899999999999998642  22599999998766432           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                       ..+..|+.+|.+.+.+.+       ..|+++++|+||.+.++..
T Consensus       200 -~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~  243 (300)
T PRK06128        200 -PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQ  243 (300)
T ss_pred             -CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCc
Confidence             124569999999887764       2589999999999999864

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.87  E-value=4.6e-21  Score=163.38  Aligned_cols=165  Identities=17%  Similarity=0.216  Sum_probs=124.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      ..+++++++||||+|+||++++++|+++|++|++++|+.+..++...   ....++.++++|++| .+++.+++.     
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~  114 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD-LDAVDALVADVEKR  114 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999866543221   123467889999999 777766655     


Q ss_pred             -CCCcEEEEcCCCCCCC----------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          134 -DDSEAVVCATGFQPGW----------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~~----------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                       +++|+||||||.....          +++..+++|+.|+.++++++    ++.+.+++|++||.+++....        
T Consensus       115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------  186 (293)
T PRK05866        115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEAS--------  186 (293)
T ss_pred             cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC--------
Confidence             1399999999975321          12245789999988877765    456678999999975543110        


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         .....|+.+|++.+.+.+       +.|+++++++||.+.++..
T Consensus       187 ---p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~  230 (293)
T PRK05866        187 ---PLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMI  230 (293)
T ss_pred             ---CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccc
Confidence               123679999999887654       3589999999999988764

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.8e-21  Score=162.72  Aligned_cols=158  Identities=20%  Similarity=0.229  Sum_probs=119.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~  136 (252)
                      .+++++++||||+|+||++++++|+++|++|++++|+.+..      ...++.++++|++| .+++.+.+.      +++
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~------~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   78 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD------LPEGVEFVAADLTT-AEGCAAVARAVLERLGGV   78 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh------cCCceeEEecCCCC-HHHHHHHHHHHHHHcCCC
Confidence            45689999999999999999999999999999999986532      22468899999999 666554432      139


Q ss_pred             cEEEEcCCCCC----------CCCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          137 EAVVCATGFQP----------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       137 d~vi~~ag~~~----------~~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      |+||||||...          ..+++..+++|+.++.++++++    ++.+.+++|++||...+...           ..
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-----------~~  147 (260)
T PRK06523         79 DILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPL-----------PE  147 (260)
T ss_pred             CEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCC-----------CC
Confidence            99999998532          1234556789999987776554    55566789999997543211           11


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|.+.+.+.+       ..|+++++|+||.+.++..
T Consensus       148 ~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~  190 (260)
T PRK06523        148 STTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAA  190 (260)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccH
Confidence            34679999999887654       3589999999999998853

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.5e-21  Score=164.90  Aligned_cols=162  Identities=17%  Similarity=0.189  Sum_probs=122.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++..      
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH-REEVTHLADEAFRLLG   82 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999876654332   1123467889999999 7777665532      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||||....        .+++..+++|+.++.++++++.    +.+ .++||++||...+..            .
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~------------~  150 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVP------------N  150 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccC------------C
Confidence            48999999997432        1244557899999999888873    444 468999999865432            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       151 ~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~  194 (275)
T PRK05876        151 AGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLV  194 (275)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccc
Confidence            235679999997554332       3589999999999988754

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.87  E-value=4e-21  Score=160.99  Aligned_cols=162  Identities=16%  Similarity=0.150  Sum_probs=121.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d  137 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.+..++.......++.++++|++| .+++.+++.      +++|
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id   81 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS-LDDHKEAVARCVAAFGKID   81 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence            458999999999999999999999999999999998776554433223468889999999 665555443      1489


Q ss_pred             EEEEcCCCCCC-------------CCCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          138 AVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       138 ~vi~~ag~~~~-------------~~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|||||....             .+|++.+++|+.++.++++++...   ..+++|++||...+..            .
T Consensus        82 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~------------~  149 (262)
T TIGR03325        82 CLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYP------------N  149 (262)
T ss_pred             EEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecC------------C
Confidence            99999986320             134567899999999999988432   2257888888754311            1


Q ss_pred             chhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|..+|.+.+.+.+.      ..++++.|.||.+.++..
T Consensus       150 ~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~  192 (262)
T TIGR03325       150 GGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLR  192 (262)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCc
Confidence            1235789999999977652      249999999999998764

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.8e-21  Score=162.32  Aligned_cols=162  Identities=14%  Similarity=0.142  Sum_probs=122.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+|+||.+++++|+++|++|++++|++++.++...   ....++.++.+|++| .+++.+++..      
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   82 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD-EAYAKALVALAVERFG   82 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999998776544321   123468889999999 7666655541      


Q ss_pred             CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||||....         .+++..+++|+.++.++++++    ++.+.+++|++||...+...           .
T Consensus        83 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~-----------~  151 (254)
T PRK07478         83 GLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAG-----------F  151 (254)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccC-----------C
Confidence            49999999996421         124566899998887775554    55666799999997543211           1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+..|..+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       152 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  194 (254)
T PRK07478        152 PGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPM  194 (254)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcc
Confidence            234679999999887654       248999999999998874

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.87  E-value=4e-21  Score=159.06  Aligned_cols=160  Identities=19%  Similarity=0.217  Sum_probs=123.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC---CCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---~~d~vi~~  142 (252)
                      +++++||||+|+||.+++++|+++|++|++++|+++..++... ...++.++++|++| .+++.+++.+   .+|.+|||
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~d~~i~~   78 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT-QSANIFTLAFDVTD-HPGTKAALSQLPFIPELWIFN   78 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-hcCCCeEEEeeCCC-HHHHHHHHHhcccCCCEEEEc
Confidence            4789999999999999999999999999999998776554332 23468899999999 8888887764   36899999


Q ss_pred             CCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHH
Q 025456          143 TGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKL  212 (252)
Q Consensus       143 ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~  212 (252)
                      +|.....        ++++.+++|+.++.++++++...  +.+++|++||......            ......|+.+|+
T Consensus        79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~------------~~~~~~Y~asK~  146 (240)
T PRK06101         79 AGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELA------------LPRAEAYGASKA  146 (240)
T ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccC------------CCCCchhhHHHH
Confidence            9854211        23356899999999999998652  2358999988642110            112457899999


Q ss_pred             HHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          213 QAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       213 ~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      +++.+.+       +.|+++++++||++.++...
T Consensus       147 a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~  180 (240)
T PRK06101        147 AVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTD  180 (240)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcC
Confidence            9987753       46899999999999998643

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.87  E-value=3.1e-21  Score=166.54  Aligned_cols=170  Identities=18%  Similarity=0.263  Sum_probs=121.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      ++++++||||+||||.+++++|+++|++|++++|+.++.+....   ....++.++.+|++| .+++.+++..      +
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~~   83 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD-LDSVRRFVDDFRALGKP   83 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC-HHHHHHHHHHHHHhCCC
Confidence            57999999999999999999999999999999998776543221   123468899999999 7777665532      4


Q ss_pred             CcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHH----hcC--CCEEEEEccceeeccCC-CC---CC--
Q 025456          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRG--VNRFILISSILVNGAAM-GQ---IL--  194 (252)
Q Consensus       136 ~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~----~~~--~~~~v~~SS~~v~~~~~-~~---~~--  194 (252)
                      +|+||||||+...         .+++..+++|+.|+.++++++.    +.+  .++||++||...+.... +.   +.  
T Consensus        84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~~  163 (322)
T PRK07453         84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPA  163 (322)
T ss_pred             ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCcc
Confidence            9999999996431         1245668999999999888774    333  35999999986643110 00   00  


Q ss_pred             Cc-----------------chhccchhhHHHHHHHHHHHHH----HH----cCCcEEEEeCCcccC
Q 025456          195 NP-----------------AYIFLNVFGLTLIAKLQAEQYI----RK----SGINYTIIRPGGLRN  235 (252)
Q Consensus       195 ~~-----------------~~~~~~~~~~y~~sK~~~e~~~----~~----~gi~~~~lrPg~i~~  235 (252)
                      +.                 ...+.++...|+.||.+.+.+.    ++    .|+++++++||++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~  229 (322)
T PRK07453        164 DLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVAD  229 (322)
T ss_pred             chhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence            00                 0012355678999999775433    32    379999999999963

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.87  E-value=1.7e-21  Score=161.79  Aligned_cols=162  Identities=19%  Similarity=0.208  Sum_probs=122.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDS  136 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~  136 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+... ..+.+.....++.++++|+++ .+++.++++      +++
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~   81 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSD-IEAIKALVDSAVEEFGHI   81 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999999987532 222222233568899999999 766665443      149


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |+||||+|....        .++++.+++|+.++.++++++.    +.+ .+++|++||...+....            .
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------------~  149 (248)
T TIGR01832        82 DILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI------------R  149 (248)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCC------------C
Confidence            999999997542        1344567899999999988874    333 46899999986654221            2


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|..+|++.+.+.+       .+|+++++++||.+.++..
T Consensus       150 ~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~  191 (248)
T TIGR01832       150 VPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNT  191 (248)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcch
Confidence            3468899999887664       2489999999999988853

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.87  E-value=1.7e-21  Score=162.39  Aligned_cols=162  Identities=19%  Similarity=0.130  Sum_probs=120.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+++..+...   .....++.++.+|++| .+++.+++..      
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD-EEAINAGIDYAVETFG   80 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            35789999999999999999999999999999999877654322   1124578899999999 7777666542      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHH----HHHhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVE----ACRKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~----~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      .+|+||||+|.....        +++..+++|+.++.++++    .+++.+.++||++||...+...            .
T Consensus        81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~------------~  148 (258)
T PRK12429         81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGS------------A  148 (258)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCC------------C
Confidence            389999999864421        223456789998555554    4456677899999998544221            2


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|..+|.+.+.+.+       ..++++++++||.+.++..
T Consensus       149 ~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~  191 (258)
T PRK12429        149 GKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLV  191 (258)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhh
Confidence            24667788887776553       2589999999999998754

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.87  E-value=8.5e-21  Score=157.54  Aligned_cols=166  Identities=16%  Similarity=0.188  Sum_probs=122.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++++++||||+||||++++++|+++|++|++++|+.+. .+.   .+.....++.++++|++| .+++.+++..     
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD-EESVAALMDTAREEF   82 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhC
Confidence            457999999999999999999999999999999987543 211   111123467889999999 7777665541     


Q ss_pred             -CCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          135 -DSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       135 -~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                       .+|+||||+|...  ..++...+++|+.++.++++++.+.  ..+++|++||........    .+.   ...+..|+.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~~---~~~~~~Y~~  155 (248)
T PRK07806         83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VKT---MPEYEPVAR  155 (248)
T ss_pred             CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----ccC---CccccHHHH
Confidence             3999999998643  2346677899999999999999754  235899999864321110    010   112578999


Q ss_pred             HHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          210 AKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       210 sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      +|+++|.+++.       .++++++++||.+.++.
T Consensus       156 sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~  190 (248)
T PRK07806        156 SKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTV  190 (248)
T ss_pred             HHHHHHHHHHHHHHHhhccCeEEEEeCCccccCch
Confidence            99999987753       58999999999887753

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.87  E-value=2.1e-21  Score=162.20  Aligned_cols=161  Identities=19%  Similarity=0.215  Sum_probs=123.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++++++||||+|+||.++++.|+++|++|++++|+.+..++.......++.++.+|++| .+++.+++..      ++|
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTR-QDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            457899999999999999999999999999999999876654333223468889999999 6666655542      489


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc----C-CCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----G-VNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~----~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      +||||+|....        .+++..+++|+.++.++++++...    + .++||++||......            ..+.
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~~  150 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRG------------EALV  150 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCC------------CCCC
Confidence            99999986431        234556889999999999998532    1 258999999642111            1234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+.+       +.|+++++|+||.++++.
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~  190 (257)
T PRK07067        151 SHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPM  190 (257)
T ss_pred             chhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchh
Confidence            678999998887654       368999999999999875

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.87  E-value=7.6e-21  Score=158.05  Aligned_cols=162  Identities=17%  Similarity=0.183  Sum_probs=122.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.+........  ...++.++++|++| .+++.+++..      +
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~   81 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS-AEAVEALVDFVAARWGR   81 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999999987655432221  23468899999999 7777665541      4


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||+|.....        +++..+++|+.++.++.+.+    ++.+.++||++||...+...            ..
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~------------~~  149 (252)
T PRK06138         82 LDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGG------------RG  149 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCC------------CC
Confidence            99999999975421        22344789999987766655    55677899999997543211            12


Q ss_pred             hhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|+.+|.+.+.+++.       .|+++++++||++.++..
T Consensus       150 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~  191 (252)
T PRK06138        150 RAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYF  191 (252)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcch
Confidence            46789999988876542       489999999999988753

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=2.4e-21  Score=161.73  Aligned_cols=161  Identities=19%  Similarity=0.181  Sum_probs=119.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+|+||++++++|+++|++|+++.++.+...+.+.  ..++.++.+|++| .+++.+++..      ++|
T Consensus         5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~--~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id   81 (255)
T PRK06463          5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR--EKGVFTIKCDVGN-RDQVKKSKEVVEKEFGRVD   81 (255)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH--hCCCeEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            457999999999999999999999999999988776543322222  1257889999999 7766665542      489


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHH----HHhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEA----CRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~----~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||+|....        .+++..+++|+.++.++++.    +++.+.++||++||...++..           .....
T Consensus        82 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-----------~~~~~  150 (255)
T PRK06463         82 VLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTA-----------AEGTT  150 (255)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCC-----------CCCcc
Confidence            99999987432        13445678999997665444    455556799999998655321           11235


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|++.+.+.+       ..|+++++++||++.++..
T Consensus       151 ~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~  190 (255)
T PRK06463        151 FYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMT  190 (255)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchh
Confidence            69999999887664       2589999999999988753

>PLN00016 RNA-binding protein; Provisional

Probab=99.87  E-value=5e-21  Score=168.73  Aligned_cols=154  Identities=18%  Similarity=0.218  Sum_probs=116.6

Q ss_pred             CCcEEEEE----cCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc-------c-CCCCeEEEEeeCCCChHHHHHHH
Q 025456           65 KQKKIFVA----GATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-------K-DNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        65 ~~~~vlVt----GatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-------~-~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      .+++|+||    |||||||++|+++|+++|++|++++|+.........       . ...+++++.+|+.| .+.+. ..
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d-~~~~~-~~  128 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD-VKSKV-AG  128 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH-HHhhh-cc
Confidence            46899999    999999999999999999999999998754221110       0 12358899999876 33222 12


Q ss_pred             cCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHH
Q 025456          133 GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKL  212 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~  212 (252)
                      .+ +|+|||+++.            +..++.+++++|++.|+++|||+||.++|+.....+..+.. +.++..    +|.
T Consensus       129 ~~-~d~Vi~~~~~------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~-~~~p~~----sK~  190 (378)
T PLN00016        129 AG-FDVVYDNNGK------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGD-AVKPKA----GHL  190 (378)
T ss_pred             CC-ccEEEeCCCC------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCC-cCCCcc----hHH
Confidence            34 9999999752            25578999999999999999999999999865443333321 122222    799


Q ss_pred             HHHHHHHHcCCcEEEEeCCcccCCCC
Q 025456          213 QAEQYIRKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       213 ~~e~~~~~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+|+++++.+++++++||++++|+..
T Consensus       191 ~~E~~l~~~~l~~~ilRp~~vyG~~~  216 (378)
T PLN00016        191 EVEAYLQKLGVNWTSFRPQYIYGPGN  216 (378)
T ss_pred             HHHHHHHHcCCCeEEEeceeEECCCC
Confidence            99999999999999999999999864

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.86  E-value=3.8e-21  Score=160.46  Aligned_cols=165  Identities=20%  Similarity=0.146  Sum_probs=121.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      ++++++++||||+|+||++++++|+++|++|++++|+.+. .++   .+.....++.++++|++| .+++.+.+..    
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~   83 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS-KADLRAAVARTEAE   83 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999987542 222   122123468889999999 6666655432    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||+|....        .+++..+++|+.++..+++++    ++.+.++||++||...+....+         
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~---------  154 (254)
T PRK06114         84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRG---------  154 (254)
T ss_pred             cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCC---------
Confidence              48999999997532        234566889999998877765    4455579999999754321110         


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                       .....|..+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       155 -~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~  198 (254)
T PRK06114        155 -LLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMN  198 (254)
T ss_pred             -CCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccc
Confidence             013568899998887654       3589999999999988764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.86  E-value=3.2e-21  Score=160.32  Aligned_cols=158  Identities=22%  Similarity=0.229  Sum_probs=118.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEAVV  140 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~vi  140 (252)
                      |+++||||+|+||.++++.|+++|++|++++|++++.+........++.++.+|++| .+++.+.+..      ++|+||
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~id~vi   79 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWRNIDVLV   79 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence            579999999999999999999999999999999876654332223468899999999 7766665531      399999


Q ss_pred             EcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||+|....         .+++..+++|+.++.++++.+    ++.+.+++|++||...+..            ......|
T Consensus        80 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------~~~~~~Y  147 (248)
T PRK10538         80 NNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP------------YAGGNVY  147 (248)
T ss_pred             ECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCC------------CCCCchh
Confidence            99986421         123455789999966665554    5567789999999754311            1224679


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +.+|.+.+.+.+       ..++++++++||.+.+.+
T Consensus       148 ~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~  184 (248)
T PRK10538        148 GATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTE  184 (248)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccc
Confidence            999999887764       258999999999997543

>PRK08589 short chain dehydrogenase; Validated

Probab=99.86  E-value=3.4e-21  Score=162.43  Aligned_cols=160  Identities=17%  Similarity=0.170  Sum_probs=119.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++|+++||||+|+||+++++.|+++|++|++++|+ +..++..   .....++.++.+|++| .+++.+++..      
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISD-EQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999998 5443322   1123468899999999 6666554431      


Q ss_pred             CCcEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|++|||||.....         +++..+++|+.++..+++++    ++.+ ++||++||...+...            
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------------  148 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAAD------------  148 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCC------------
Confidence            489999999975311         23455688999987777665    4445 699999997544211            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|..+|++.+.+.+       +.|+++++|.||.+.++..
T Consensus       149 ~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~  192 (272)
T PRK08589        149 LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLV  192 (272)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchh
Confidence            123679999999887765       3589999999999988753

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.86  E-value=2.8e-21  Score=161.17  Aligned_cols=163  Identities=17%  Similarity=0.198  Sum_probs=123.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++++++||||+|+||++++++|+++|++|++++|+.++..+..   .....++.++.+|++| .+++.+.+..     
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   84 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH-KQEVEAAIEHIEKDI   84 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHhc
Confidence            346899999999999999999999999999999999876654322   1123467788999999 6666655432     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||+|....        .+++..+++|+.++.++++++.    +.+.++||++||......            .
T Consensus        85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------~  152 (254)
T PRK08085         85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELG------------R  152 (254)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccC------------C
Confidence             38999999986431        2345678999999888888764    345579999999743211            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..+..|..+|++.+.+.+       +.|+++++|+||++.++..
T Consensus       153 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~  196 (254)
T PRK08085        153 DTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMT  196 (254)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcch
Confidence            234678999999887764       2589999999999998853

>PRK06398 aldose dehydrogenase; Validated

Probab=99.86  E-value=4.1e-21  Score=160.73  Aligned_cols=153  Identities=18%  Similarity=0.164  Sum_probs=119.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+....        .++.++++|++| .+++.+++..      ++|
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~--------~~~~~~~~D~~~-~~~i~~~~~~~~~~~~~id   74 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY--------NDVDYFKVDVSN-KEQVIKGIDYVISKYGRID   74 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc--------CceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999999875421        368889999999 6666655531      499


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||||....        .+++..+++|+.++.++++++.    +.+.++||++||...+..            ...+.
T Consensus        75 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~~  142 (258)
T PRK06398         75 ILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAV------------TRNAA  142 (258)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccC------------CCCCc
Confidence            99999997431        1344567999999988888773    345579999999865421            12356


Q ss_pred             HHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~  237 (252)
                      .|+.+|++.+.+.+.      .++++++|+||.+.++.
T Consensus       143 ~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~  180 (258)
T PRK06398        143 AYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPL  180 (258)
T ss_pred             hhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchH
Confidence            799999999887652      24999999999998874

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.86  E-value=3.3e-21  Score=160.85  Aligned_cols=162  Identities=18%  Similarity=0.234  Sum_probs=122.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+++..++...   ....++.++.+|++| .+++.+++..      
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD-EDQCANLVALALERFG   81 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC-HHHHHHHHHHHHHHcC
Confidence            457999999999999999999999999999999998765543321   123568899999999 6666554431      


Q ss_pred             CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||....         .++...+++|+.++..+++++.+.   ..++||++||...+..            ..
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~------------~~  149 (258)
T PRK07890         82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHS------------QP  149 (258)
T ss_pred             CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccC------------CC
Confidence            38999999986421         123455789999999999998542   2258999999754321            12


Q ss_pred             hhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..|..+|.+.+.+++.       .++++++++||.++++..
T Consensus       150 ~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~  192 (258)
T PRK07890        150 KYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPL  192 (258)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHH
Confidence            346788999998876652       489999999999998753

>PRK07985 oxidoreductase; Provisional

Probab=99.86  E-value=3.5e-21  Score=164.19  Aligned_cols=162  Identities=15%  Similarity=0.192  Sum_probs=121.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch--hhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--KAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~--~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .+++++++||||+|+||++++++|+++|++|++..|+.+  ..++   .+.....++.++.+|++| .+++.+++..   
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~  124 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD-EKFARSLVHEAHK  124 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence            356899999999999999999999999999998776532  2211   122223467889999999 6666554432   


Q ss_pred             ---CCcEEEEcCCCCC---------CCCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 ---DSEAVVCATGFQP---------GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 ---~~d~vi~~ag~~~---------~~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                         ++|++|||||...         ..++++.+++|+.++.++++++...  .-++||++||...+...           
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~-----------  193 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPS-----------  193 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCC-----------
Confidence               3899999998632         1234567899999999999988542  22689999998665321           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       ..+..|+.+|++.+.+.+       ..|+++++|+||++.++.
T Consensus       194 -~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~  236 (294)
T PRK07985        194 -PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTAL  236 (294)
T ss_pred             -CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCcccc
Confidence             123579999999887654       358999999999999985

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.86  E-value=9.5e-21  Score=157.99  Aligned_cols=159  Identities=21%  Similarity=0.273  Sum_probs=120.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +++++||||+|+||++++++|+++|++|++++|+++...+..   .....++.++.+|++| .+++.+++.+++|+||||
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD-AIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC-HHHHHHHhcCCCCEEEEC
Confidence            579999999999999999999999999999999876543321   1123468899999999 788888877449999999


Q ss_pred             CCCCCCC--------CCCCcceehHHHHHHHHHH----HHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHH
Q 025456          143 TGFQPGW--------DLFAPWKVDNFGTVNLVEA----CRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       143 ag~~~~~--------~~~~~~~~n~~g~~~ll~~----~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~s  210 (252)
                      ||.....        +++..+++|+.++.++.+.    +++.+.++||++||...+...            .....|+.+
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~------------~~~~~Y~~s  148 (257)
T PRK09291         81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITG------------PFTGAYCAS  148 (257)
T ss_pred             CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCC------------CCcchhHHH
Confidence            9965421        1334567898887766554    456667899999997432111            123578899


Q ss_pred             HHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          211 KLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       211 K~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      |.+.|.+.+       ..|+++++|+||.+.++.
T Consensus       149 K~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~  182 (257)
T PRK09291        149 KHALEAIAEAMHAELKPFGIQVATVNPGPYLTGF  182 (257)
T ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEecCcccccc
Confidence            999887643       369999999999987654

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.86  E-value=6.4e-21  Score=158.29  Aligned_cols=162  Identities=17%  Similarity=0.151  Sum_probs=122.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++++||||+|+||.+++++|+++|++|++++|+++........  ...++.++.+|++| .+++.+++..      +
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   81 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD-EADVEAAVAAALERFGS   81 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999999999998665433221  13458899999999 7777766542      3


Q ss_pred             CcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       136 ~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      +|+|||++|....         .+++..+++|+.++.++++.+.    +.+.++||++||...+...            .
T Consensus        82 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~  149 (251)
T PRK07231         82 VDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPR------------P  149 (251)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCC------------C
Confidence            8999999986431         1234567899998777777664    4566899999998655321            2


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|.+.+.+++       ..++++++++||.+.++..
T Consensus       150 ~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~  192 (251)
T PRK07231        150 GLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLL  192 (251)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcc
Confidence            34678899988876554       2489999999999988753

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.86  E-value=4.2e-21  Score=159.40  Aligned_cols=160  Identities=17%  Similarity=0.196  Sum_probs=122.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      ++++++||||+|+||++++++|+++|++|++++|+.+...+..   .....++.++++|++| .+++++++..      +
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD-RDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence            5799999999999999999999999999999999876654322   1123568999999999 7777766541      3


Q ss_pred             CcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||+|....        .+++..+++|+.++.++++++.    +.+.+++|++||...+....            .
T Consensus        81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~------------~  148 (250)
T TIGR03206        81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSS------------G  148 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCC------------C
Confidence            8999999986431        1233457899999998877763    55668999999986654321            2


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|++.+.+.+       ..++++++++||.++++.
T Consensus       149 ~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~  189 (250)
T TIGR03206       149 EAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTAL  189 (250)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchh
Confidence            3568899988776554       248999999999998874

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.86  E-value=2.6e-21  Score=163.53  Aligned_cols=159  Identities=25%  Similarity=0.384  Sum_probs=120.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHH---H---Hc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSE---A---IG  133 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~---~---~~  133 (252)
                      ++++++||||+|+||+++++.|+++|++|++++|+++..+....   .  ...+++++.+|++| .+++.+   .   +.
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD-QNSIHNFQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC-HHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999998765543221   1  13468999999999 666554   2   23


Q ss_pred             CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          134 DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||+|.....        ++++.+++|+.++.++++.+    ++.+.++||++||...+..            .
T Consensus        81 -~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~------------~  147 (280)
T PRK06914         81 -RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVG------------F  147 (280)
T ss_pred             -CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCC------------C
Confidence             389999999865421        22345679999988888775    5666789999999743211            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|.+.+.+++       ++|+++++++||.+.++.
T Consensus       148 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~  190 (280)
T PRK06914        148 PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNI  190 (280)
T ss_pred             CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccch
Confidence            234678899999887664       358999999999998874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.86  E-value=9.4e-21  Score=158.81  Aligned_cols=162  Identities=19%  Similarity=0.166  Sum_probs=122.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.+..+........++.++++|++| .+++.+.+..      ++|
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id   82 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTS-YADNQRAVDQTVDAFGKLD   82 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHhcCCCC
Confidence            468999999999999999999999999999999998876654433233468889999999 6666655431      499


Q ss_pred             EEEEcCCCCCC------CC-------CCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          138 AVVCATGFQPG------WD-------LFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       138 ~vi~~ag~~~~------~~-------~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      +||||||+...      .+       ++..+++|+.++.++++++..   ...+++|++||...+...            
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------  150 (263)
T PRK06200         83 CFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPG------------  150 (263)
T ss_pred             EEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCC------------
Confidence            99999996421      11       445689999999888888742   122689999998654221            


Q ss_pred             chhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|.+.+.+.+.      .+++++.|.||.+.++..
T Consensus       151 ~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~  193 (263)
T PRK06200        151 GGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLR  193 (263)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCc
Confidence            1235689999998877652      359999999999988753

>PRK06194 hypothetical protein; Provisional

Probab=99.86  E-value=4.8e-21  Score=162.53  Aligned_cols=161  Identities=14%  Similarity=0.127  Sum_probs=121.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++++++|||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.+      
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD-AAQVEALADAALERFG   82 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            45789999999999999999999999999999999876544322   1123468889999999 7777766542      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHH----HHhcCC------CEEEEEccceeeccCCCCCCCc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEA----CRKRGV------NRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~----~~~~~~------~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                      ++|+||||||....        .+++..+++|+.|+.+++++    +.+.+.      +++|++||...+...       
T Consensus        83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------  155 (287)
T PRK06194         83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP-------  155 (287)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC-------
Confidence            38999999997542        12344578999999987777    444443      589999998655321       


Q ss_pred             chhccchhhHHHHHHHHHHHHHHH---------cCCcEEEEeCCcccCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIRK---------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~~---------~gi~~~~lrPg~i~~~~  237 (252)
                           .....|+.+|++.+.+.+.         .+++++.+.||.+.++.
T Consensus       156 -----~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~  200 (287)
T PRK06194        156 -----PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGI  200 (287)
T ss_pred             -----CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcc
Confidence                 1246799999998877641         35889999999987764

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.86  E-value=6.1e-21  Score=158.51  Aligned_cols=159  Identities=20%  Similarity=0.180  Sum_probs=121.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+|+||.+++++|+++|++|++++|+.+..+...   .....++.++.+|++| .+++.+.+..      
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   82 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD-PDSAKAMADATVSAFG   82 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence            45799999999999999999999999999999999876543322   1123467889999999 6666554431      


Q ss_pred             CCcEEEEcCCCCCC-----------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 DSEAVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 ~~d~vi~~ag~~~~-----------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                      ++|+||||+|+...           .++++.+++|+.++.++++++..    .+.++||++||..+|.            
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------  150 (250)
T PRK07774         83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL------------  150 (250)
T ss_pred             CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC------------
Confidence            38999999997431           12334578999999999888853    3457999999986542            


Q ss_pred             ccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                         +.+.|+.+|++.|.+++.       .++++++++||.+.++..
T Consensus       151 ---~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~  193 (250)
T PRK07774        151 ---YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEAT  193 (250)
T ss_pred             ---CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccc
Confidence               135689999999877642       479999999999988764

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.86  E-value=4.6e-21  Score=160.24  Aligned_cols=162  Identities=17%  Similarity=0.228  Sum_probs=121.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch--hhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      .+++++++||||+|+||.+++++|+++|++|+++.|+..  ...+.+.....++.++++|++| .+++.+.++.      
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTK-PESAEKVVKEALEEFG   90 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            356899999999999999999999999999999998732  1122222233568899999999 7766665541      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|++|||+|....        .+++..+++|+.++.++++++    ++.+.+++|++||...+...            .
T Consensus        91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~  158 (258)
T PRK06935         91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGG------------K  158 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCC------------C
Confidence            38999999986431        134456789999987777665    45556799999998654221            2


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .+..|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       159 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~  200 (258)
T PRK06935        159 FVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTAN  200 (258)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccc
Confidence            24578999999987764       358999999999998875

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.86  E-value=9.1e-21  Score=156.79  Aligned_cols=163  Identities=23%  Similarity=0.231  Sum_probs=123.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh----ccccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++++++||||+|+||++++++|+++|++|+++.|+.+...+    .......++.++.+|++| .+++.+.+.+     
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~   82 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTD-KAALEAAVAAAVERF   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCC-HHHHHHHHHHHHHHc
Confidence            457899999999999999999999999999887776554322    111134568999999999 7777666532     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+|||++|.....        ++...+++|+.++.++++.+    ++.+.++||++||...+...            
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~------------  150 (249)
T PRK12825         83 GRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGW------------  150 (249)
T ss_pred             CCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCC------------
Confidence             389999999964321        23455789999999998887    45677899999998665321            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .....|..+|.+.+.+++       +.+++++++|||.++++...
T Consensus       151 ~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~  195 (249)
T PRK12825        151 PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKE  195 (249)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccc
Confidence            124678899988876553       35899999999999998743

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.86  E-value=4.1e-21  Score=159.37  Aligned_cols=160  Identities=19%  Similarity=0.184  Sum_probs=120.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d  137 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.+..++.......++.++++|++| .+++.+.+.      +++|
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   82 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGD-VAAQKALAQALAEAFGRLD   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence            357899999999999999999999999999999998765544333233467889999999 555444332      1399


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccce-eeccCCCCCCCcchhccchhhH
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSIL-VNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~-v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      +||||+|....        .+++..+++|+.++.++++++...  ..+++|++||.. .++.             .....
T Consensus        83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~-------------~~~~~  149 (249)
T PRK06500         83 AVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM-------------PNSSV  149 (249)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-------------CCccH
Confidence            99999986432        123456889999999999999641  235788877753 2321             12467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      |+.+|++.|.+++       ..|+++++++||.+.++.
T Consensus       150 Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~  187 (249)
T PRK06500        150 YAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPL  187 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHH
Confidence            9999999988773       248999999999999874

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.86  E-value=1.4e-20  Score=156.42  Aligned_cols=161  Identities=19%  Similarity=0.199  Sum_probs=120.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEE-eecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKA-GVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~-~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++++++||||+|+||++++++|+++|++|++ ..|+.+..++.   +.....++.++.+|++| .+++.+++++     
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGD-VEKIKEMFAQIDEEF   80 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            35789999999999999999999999999876 46766544332   11234568899999999 7766665542     


Q ss_pred             -CCcEEEEcCCCCCCCC--------CCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPGWD--------LFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~~--------~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||+|......        +...+++|+.++.++++++.+    .+.++||++||...+..            .
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------~  148 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRY------------L  148 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccC------------C
Confidence             3899999998644221        223467999999998888753    45679999999754321            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+..|+.+|.+.+.+++       +.|+++++|+||.+.++.
T Consensus       149 ~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~  191 (250)
T PRK08063        149 ENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDA  191 (250)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCch
Confidence            234678999999998764       368999999999998765

>PRK08264 short chain dehydrogenase; Validated

Probab=99.86  E-value=8.8e-21  Score=156.51  Aligned_cols=157  Identities=26%  Similarity=0.352  Sum_probs=123.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi  140 (252)
                      +++++++||||+|+||++++++|+++|+ +|++++|+.++..+    ...++.++.+|++| .+++.+.+..  ++|+||
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~-~~~~~~~~~~~~~id~vi   78 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGPRVVPLQLDVTD-PASVAAAAEAASDVTILV   78 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCCceEEEEecCCC-HHHHHHHHHhcCCCCEEE
Confidence            4578999999999999999999999998 99999998766543    23578999999999 7777777653  489999


Q ss_pred             EcCCC-CCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGF-QPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~-~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      |++|. ...        .++...+++|+.++.++++++.    +.+.++||++||...+..            ...+..|
T Consensus        79 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~------------~~~~~~y  146 (238)
T PRK08264         79 NNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVN------------FPNLGTY  146 (238)
T ss_pred             ECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccC------------CCCchHh
Confidence            99997 321        1233457899999999988864    456678999999765432            1234679


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +.+|.+.+.+.+       +.++++++++||.+.++.
T Consensus       147 ~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~  183 (238)
T PRK08264        147 SASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM  183 (238)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence            999999987654       248999999999998875

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.86  E-value=9.5e-21  Score=156.65  Aligned_cols=160  Identities=16%  Similarity=0.221  Sum_probs=122.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      ++|+++||||+|+||++++++|+++|++|++++|+++..+...   .....++.++.+|++| .+++.+.+..      +
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSN-PEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999999876554322   1123568899999999 6666555431      4


Q ss_pred             CcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||+|....        .+++..+++|+.++.++++.+    ++.+.+++|++||...++..            ..
T Consensus        84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~  151 (241)
T PRK07454         84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAF------------PQ  151 (241)
T ss_pred             CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCC------------CC
Confidence            9999999996432        123455789999988877765    45556799999998665322            22


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +..|..+|.+.+.+.+       ..|+++++|+||.+.++.
T Consensus       152 ~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~  192 (241)
T PRK07454        152 WGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPL  192 (241)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCc
Confidence            4678999999887653       358999999999998875

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.86  E-value=7.4e-21  Score=157.83  Aligned_cols=163  Identities=22%  Similarity=0.225  Sum_probs=124.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.++....   +.....++.++.+|++| .+++.+.+.+      
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRD-RAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            4578999999999999999999999999999999986544322   22233458899999999 7777776642      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||+|....        .++...+++|+.++.++++++    ++.+.++||++||...++.           +..
T Consensus        83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~-----------~~~  151 (251)
T PRK12826         83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV-----------GYP  151 (251)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc-----------CCC
Confidence            38999999986542        123445789999999998887    3456679999999865411           112


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|.+++.+++       ..++++++++||+++++..
T Consensus       152 ~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~  194 (251)
T PRK12826        152 GLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMA  194 (251)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchh
Confidence            34678999998887654       2489999999999999753

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.86  E-value=6.3e-21  Score=159.45  Aligned_cols=166  Identities=20%  Similarity=0.199  Sum_probs=124.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++++++||||+|+||.+++++|+++|++|++++|+.++.+...   .....++.++++|++| .+++.+.+..     
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d-~~~i~~~~~~~~~~~   87 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVAD-EADIERLAEETLERF   87 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999999876654322   1123467889999999 7777554431     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc-----CCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR-----GVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~-----~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       ++|+||||+|....        .++.+.+++|+.++.++++++.+.     +.++||++||...+....+.        
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~--------  159 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPE--------  159 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCcc--------
Confidence             38999999986421        123455789999999999987543     56799999997554322110        


Q ss_pred             cchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      ..+...|..+|++.+.+++.       .|+++++++||.+.++.
T Consensus       160 ~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~  203 (259)
T PRK08213        160 VMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKM  203 (259)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcc
Confidence            12346789999999877652       48999999999998865

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.86  E-value=5.2e-21  Score=160.07  Aligned_cols=160  Identities=18%  Similarity=0.113  Sum_probs=121.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-CCCCeEEEEeeCCCChHHHHHHHc-------CCCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIG-------DDSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~-------~~~d  137 (252)
                      ||+++||||+|+||++++++|+++|++|++++|+.+..++.... ...++.++++|++| .+++.+.+.       +++|
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~~id   79 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTD-RAAWDAALADFAAATGGRLD   79 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCC
Confidence            47899999999999999999999999999999998766543321 13568999999999 666665543       2489


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||||.....        +++..+++|+.++.++++++.    +.+.++||++||.......            ....
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~  147 (260)
T PRK08267         80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQ------------PGLA  147 (260)
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCC------------CCch
Confidence            999999975421        234567899999999988873    4455799999997432111            1246


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|++.+.+.+       ..++++++++||.+.++..
T Consensus       148 ~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~  187 (260)
T PRK08267        148 VYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAML  187 (260)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCccc
Confidence            78899998876654       2589999999999988653

>PRK09186 flagellin modification protein A; Provisional

Probab=99.86  E-value=6.4e-21  Score=158.95  Aligned_cols=171  Identities=21%  Similarity=0.217  Sum_probs=118.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-----CCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+|+||+++++.|+++|++|+++.|+++..++....     ....+.++.+|++| .+++.+++..    
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~   80 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD-QESLEEFLSKSAEK   80 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC-HHHHHHHHHHHHHH
Confidence            3579999999999999999999999999999999987665432211     12356778999999 7777666542    


Q ss_pred             --CCcEEEEcCCCCCC-----------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 --DSEAVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 --~~d~vi~~ag~~~~-----------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                        ++|+|||||+....           .++...+++|+.++..+++++    ++.+.++||++||...+....... .+.
T Consensus        81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~-~~~  159 (256)
T PRK09186         81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEI-YEG  159 (256)
T ss_pred             cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchh-ccc
Confidence              38999999975321           123345678887776665554    556778999999976432211100 011


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      . +......|+.+|.+.+.+.+       ..++++++++||.+.++.
T Consensus       160 ~-~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~  205 (256)
T PRK09186        160 T-SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQ  205 (256)
T ss_pred             c-ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCC
Confidence            1 11122469999998887764       358999999999887654

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.86  E-value=2.3e-20  Score=155.52  Aligned_cols=162  Identities=19%  Similarity=0.158  Sum_probs=120.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      +++++++||||+|+||++++++|+++|++|+++ .|+.+..++...   ....++.++.+|++| .+++.++++      
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~~~~~   82 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNS-IDGVKKLVEQLKNEL   82 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCC-HHHHHHHHHHHHHHh
Confidence            457999999999999999999999999999775 566554432221   123468899999999 777666554      


Q ss_pred             ------CCCcEEEEcCCCCCCCC--------CCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcc
Q 025456          134 ------DDSEAVVCATGFQPGWD--------LFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       134 ------~~~d~vi~~ag~~~~~~--------~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                            +++|+||||+|......        +...+++|+.++.++++++.+.  ..+++|++||..++...        
T Consensus        83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~--------  154 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGF--------  154 (254)
T ss_pred             ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCC--------
Confidence                  13899999998743211        2344679999999999998652  33689999998665321        


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                          .....|+.+|++.+.+.+       +.++++++++||.+.++..
T Consensus       155 ----~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~  198 (254)
T PRK12746        155 ----TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDIN  198 (254)
T ss_pred             ----CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcch
Confidence                224578999999887653       2589999999999988753

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.85  E-value=1.6e-20  Score=158.69  Aligned_cols=162  Identities=22%  Similarity=0.225  Sum_probs=121.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      ++++++++||||+|+||++++++|+++|++|++++|+.+..++...   ....++.++++|++| .+++.+++.      
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   85 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD-KESLEQARQQILEDF   85 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            4568999999999999999999999999999999998765443221   123468889999999 666655543      


Q ss_pred             CCCcEEEEcCCCCCC-----------------------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceee
Q 025456          134 DDSEAVVCATGFQPG-----------------------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVN  186 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~-----------------------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~  186 (252)
                      +++|+||||||....                       .+++..+++|+.++..+++.+    ++.+.++||++||...+
T Consensus        86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~  165 (278)
T PRK08277         86 GPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAF  165 (278)
T ss_pred             CCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhc
Confidence            149999999985321                       123345789999987665554    45556799999998655


Q ss_pred             ccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...            .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       166 ~~~------------~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~  211 (278)
T PRK08277        166 TPL------------TKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQ  211 (278)
T ss_pred             CCC------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcc
Confidence            321            224679999999987765       248999999999999885

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.85  E-value=8.7e-21  Score=158.13  Aligned_cols=163  Identities=19%  Similarity=0.145  Sum_probs=121.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++++++||||+|+||.+++++|+++|++|++++|+.+..+........++.++.+|+++ .+++.+.+..      ++
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~~   90 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD-SQSVEAAVAAVISAFGRI   90 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCC
Confidence            3468999999999999999999999999999999998754321111123457789999999 7666655532      38


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||+|....        .++.+.+++|+.++.++++++..    .+.++||++||.......            ...
T Consensus        91 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~  158 (255)
T PRK06841         91 DILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVAL------------ERH  158 (255)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCC------------CCC
Confidence            999999997532        12334678999999999998753    456799999997532111            123


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..|+.+|.+.+.+.+       ..|++++.|+||.+.++..
T Consensus       159 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~  199 (255)
T PRK06841        159 VAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELG  199 (255)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCccc
Confidence            578899998876654       2589999999999988753

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.1e-20  Score=159.57  Aligned_cols=161  Identities=21%  Similarity=0.274  Sum_probs=121.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +.+++++||||+|+||++++++|+++|++|++++|+.+...+...   ....++.++.+|++| .+++.+++..      
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   86 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD-PDSVKSFVAQAEEALG   86 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999998765433221   123468889999999 7777665542      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||.....        ++...+++|+.++.++++.+.    +.+.++||++||...+...            .
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~------------~  154 (274)
T PRK07775         87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQR------------P  154 (274)
T ss_pred             CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCC------------C
Confidence            389999999865321        123446899999999988864    3455789999998655322            1


Q ss_pred             hhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      ....|..+|++.|.+++.       .|++++++|||.+.++.
T Consensus       155 ~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~  196 (274)
T PRK07775        155 HMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGM  196 (274)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcc
Confidence            235789999999987652       38999999999987764

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.85  E-value=1.3e-20  Score=172.69  Aligned_cols=171  Identities=20%  Similarity=0.286  Sum_probs=125.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhh------h-hccc-----------c------CCCCeEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKA------K-TTLS-----------K------DNPSLQI  116 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~------~-~~~~-----------~------~~~~~~~  116 (252)
                      .++++|+|||||||||.+|+++|++.+.   +|+++.|..+..      . +++.           .      ...++.+
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            4689999999999999999999998753   689999965321      0 1110           0      1347899


Q ss_pred             EEeeCCCC-----hHHHHHHHcCCCcEEEEcCCCCC-CCCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceeeccC
Q 025456          117 VKADVTEG-----SAKLSEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAA  189 (252)
Q Consensus       117 i~~Dl~d~-----~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~~~~  189 (252)
                      +.+|++++     ++..+.+..+ +|+|||+|+... ..+.+..+++|+.|+.+++++|++. +.++||++||.++||..
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~~~-vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~  275 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIAKE-VDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQR  275 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHHhc-CCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCC
Confidence            99999983     2345555566 999999998654 3345566889999999999999886 46889999999999876


Q ss_pred             CCCCCCcchh---------------------------------------------------------ccchhhHHHHHHH
Q 025456          190 MGQILNPAYI---------------------------------------------------------FLNVFGLTLIAKL  212 (252)
Q Consensus       190 ~~~~~~~~~~---------------------------------------------------------~~~~~~~y~~sK~  212 (252)
                      .+...+..+.                                                         .....+.|..+|+
T Consensus       276 ~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~  355 (605)
T PLN02503        276 QGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKA  355 (605)
T ss_pred             CCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHHHH
Confidence            4321110110                                                         0111267999999


Q ss_pred             HHHHHHHHc--CCcEEEEeCCcccC
Q 025456          213 QAEQYIRKS--GINYTIIRPGGLRN  235 (252)
Q Consensus       213 ~~e~~~~~~--gi~~~~lrPg~i~~  235 (252)
                      .+|+++++.  +++++++||+.|..
T Consensus       356 lAE~lV~~~~~~LPv~IvRPsiV~s  380 (605)
T PLN02503        356 MGEMVINSMRGDIPVVIIRPSVIES  380 (605)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCEecc
Confidence            999999764  79999999998844

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.85  E-value=1.1e-20  Score=157.51  Aligned_cols=161  Identities=17%  Similarity=0.220  Sum_probs=118.9

Q ss_pred             cCCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-CCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      .+++|+++||||+  ++||++++++|+++|++|++.+|+. +..+.+.+ ...++.++++|++| .++++++++      
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   81 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLVDEEDLLVECDVAS-DESIERAFATIKERV   81 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhccCceeEEeCCCCC-HHHHHHHHHHHHHHh
Confidence            3568999999999  7999999999999999999999873 22222211 22467889999999 666655442      


Q ss_pred             CCCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 DDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                      +++|++|||||....            .+++..+++|+.++.++++++...  ..+++|++||.....            
T Consensus        82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------------  149 (252)
T PRK06079         82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER------------  149 (252)
T ss_pred             CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc------------
Confidence            149999999996431            134456789999998888887432  126899999874321            


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +...+..|+.+|++.+.+.+       ..|+++++|.||.+.++.
T Consensus       150 ~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~  194 (252)
T PRK06079        150 AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLA  194 (252)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccc
Confidence            01235679999999987764       368999999999998875

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.2e-20  Score=158.17  Aligned_cols=161  Identities=21%  Similarity=0.185  Sum_probs=122.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+||||.+++++|+++|++|++++|+++..++...   ....++.++.+|+++ .+++.+++..      
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   86 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH-PEATAGLAGQAVEAFG   86 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            568999999999999999999999999999999998765543221   123568899999999 7776655441      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh-----cCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK-----RGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~-----~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||||....        .++...+++|+.++.++++++..     .+.+++|++||......            .
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------~  154 (263)
T PRK07814         87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLA------------G  154 (263)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCC------------C
Confidence            38999999986431        12445678999999999999853     45578999999743211            1


Q ss_pred             chhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|.+++.+.+.      .+++++.|+||.+.++.
T Consensus       155 ~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~  196 (263)
T PRK07814        155 RGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSA  196 (263)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCch
Confidence            2346799999999877652      36899999999998764

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.2e-20  Score=157.16  Aligned_cols=161  Identities=20%  Similarity=0.209  Sum_probs=117.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEee-cCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHH--------
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAI--------  132 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~-r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~--------  132 (252)
                      ++|+++||||+||||++++++|+++|++|++.. |+.+..+..   +......+..+.+|+++ .+++.+.+        
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES-LHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCC-HHHHHHHHHHHHHHhh
Confidence            579999999999999999999999999998865 444443321   11123457788999998 54443322        


Q ss_pred             ---c-CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcch
Q 025456          133 ---G-DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       133 ---~-~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                         . +++|+||||||.....        +++.++++|+.+++.+++++...  +.++||++||...+...         
T Consensus        82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---------  152 (252)
T PRK12747         82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL---------  152 (252)
T ss_pred             hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC---------
Confidence               1 1499999999964321        24556789999999999887532  23699999998654221         


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         .....|+.+|++.+.+++       ..|+++++|.||.+.++..
T Consensus       153 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~  196 (252)
T PRK12747        153 ---PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMN  196 (252)
T ss_pred             ---CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchh
Confidence               124679999999987664       3589999999999998863

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.4e-20  Score=162.83  Aligned_cols=162  Identities=15%  Similarity=0.145  Sum_probs=123.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.++++      +
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD-ADQVKALATQAASFGG   83 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999877654322   234567889999999 777776653      2


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|++|||||+....        +++..+++|+.++.++++++    ++.+.++||++||...+...            .
T Consensus        84 ~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~------------p  151 (330)
T PRK06139         84 RIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQ------------P  151 (330)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCC------------C
Confidence            499999999964321        23346889999998877775    45555799999997544211            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------H-cCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~-~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..|..+|++.+.+.+       + .+++++.+.||.+.++..
T Consensus       152 ~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~  195 (330)
T PRK06139        152 YAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGF  195 (330)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccc
Confidence            24679999998765543       2 379999999999999864

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.2e-20  Score=157.52  Aligned_cols=162  Identities=19%  Similarity=0.192  Sum_probs=123.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh--hccccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--TTLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++++++++||||+|+||++++++|+++|++|++++|+++..+  +.+.....++.++.+|+++ .+++.+.+.+      
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD-DAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence            467899999999999999999999999999999999876542  1111134568999999999 7767665542      


Q ss_pred             CCcEEEEcCCCCCC-------CCCCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          135 DSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       135 ~~d~vi~~ag~~~~-------~~~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      ++|+||||+|....       .+++..+++|+.++.++++.+.+   .+.++||++||...+..            ...+
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~~~  150 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTG------------QGGT  150 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccC------------CCCC
Confidence            48999999996432       12345578999999998888742   23468999999754321            1234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+++       ..+++++.|+||.++++.
T Consensus       151 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~  190 (258)
T PRK08628        151 SGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPL  190 (258)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHH
Confidence            679999999987765       258999999999999875

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.85  E-value=9.5e-21  Score=161.65  Aligned_cols=163  Identities=19%  Similarity=0.191  Sum_probs=124.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      ++++++++||||+|+||.++++.|+++|++|++++|+.+..++....  ....+..+++|++| .+++.+++.      +
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTD-LAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence            45689999999999999999999999999999999998766543221  12356667799999 766665543      2


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      ++|+||||||+...        .++++.+++|+.++.++++++..   ...++||++||...+...            ..
T Consensus        85 ~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~  152 (296)
T PRK05872         85 GIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAA------------PG  152 (296)
T ss_pred             CCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCC------------CC
Confidence            49999999997532        12345678999999999888742   123689999998654321            22


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +..|+.+|++.+.+.+       ..|++++++.||++.++..
T Consensus       153 ~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~  194 (296)
T PRK05872        153 MAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLV  194 (296)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhh
Confidence            4679999999987764       3689999999999988753

>PRK08643 acetoin reductase; Validated

Probab=99.85  E-value=8.8e-21  Score=158.25  Aligned_cols=159  Identities=23%  Similarity=0.263  Sum_probs=118.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      +|+++||||+|+||+++++.|+++|++|++++|+.+...+..   .....++.++++|++| .+++.+.+..      ++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD-RDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999999876544322   1123467889999999 6666655442      49


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |+||||||+....        +++..+++|+.++.++++.+.    +.+ .+++|++||...+...            ..
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~  148 (256)
T PRK08643         81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN------------PE  148 (256)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC------------CC
Confidence            9999999875421        234557899999887777764    322 3589999997543211            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|++.+.+.+       +.|++++.|+||.+.++.
T Consensus       149 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~  189 (256)
T PRK08643        149 LAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPM  189 (256)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChh
Confidence            3568999998876654       358999999999998875

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1e-20  Score=157.68  Aligned_cols=164  Identities=17%  Similarity=0.206  Sum_probs=122.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..++...   ....++..+.+|++| .+++.+++.      +
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ-HQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999998766543321   123467889999999 666665543      1


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||+|....        .+++..+++|+.++.++++++.    +.+ .+++|++||........          .
T Consensus        86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----------~  155 (253)
T PRK05867         86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINV----------P  155 (253)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCC----------C
Confidence            49999999997532        1344567899999999888873    332 25799999874321000          0


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       156 ~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~  199 (253)
T PRK05867        156 QQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELV  199 (253)
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCccc
Confidence            123579999999987764       3589999999999988753

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1e-20  Score=157.44  Aligned_cols=163  Identities=16%  Similarity=0.188  Sum_probs=122.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++++++||||+|+||.+++++|+++|++|++++|+.+..+....   .....+.++++|++| .+++.+++..     
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   83 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE-MEQIDALFAHIRERH   83 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            4568999999999999999999999999999999998765543222   123457889999999 6666554432     


Q ss_pred             -CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 -DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 -~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       ++|+||||+|....         .+++..+++|+.++.++++++    ++.+.+++|++||...+..            
T Consensus        84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------  151 (252)
T PRK07035         84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSP------------  151 (252)
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCC------------
Confidence             38999999985321         123456789999988887776    4555679999998743221            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...+..|+.+|++++.+++       ..|+++++|.||.+.++..
T Consensus       152 ~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~  196 (252)
T PRK07035        152 GDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFA  196 (252)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCccc
Confidence            1234679999999987765       2589999999999988753

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.9e-20  Score=157.86  Aligned_cols=157  Identities=15%  Similarity=0.248  Sum_probs=118.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d~v  139 (252)
                      ||+++||||+|+||++++++|+++|++|++++|+.+..+....   .+++++.+|++| .+++.+.+.      +++|+|
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~v   76 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA---AGFTAVQLDVND-GAALARLAEELEAEHGGLDVL   76 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---CCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEE
Confidence            4799999999999999999999999999999998776554332   357889999999 666665543      148999


Q ss_pred             EEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhccchhhHHH
Q 025456          140 VCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (252)
Q Consensus       140 i~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~  208 (252)
                      |||||.....        +++..+++|+.++.++++++..   .+.+++|++||...+...            .....|.
T Consensus        77 i~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~~Y~  144 (274)
T PRK05693         77 INNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVT------------PFAGAYC  144 (274)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCC------------CCccHHH
Confidence            9999964321        2345578999999888888732   234689999997543211            1235689


Q ss_pred             HHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          209 IAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       209 ~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+|.+.+.+.+       +.|+++++++||.+.++..
T Consensus       145 ~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~  181 (274)
T PRK05693        145 ASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFA  181 (274)
T ss_pred             HHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccc
Confidence            99998877643       3689999999999988754

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.85  E-value=9.8e-21  Score=156.64  Aligned_cols=161  Identities=17%  Similarity=0.204  Sum_probs=119.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++++++||||+|+||++++++|+++|+.|++..|+.++.++.......++.++.+|++| .+++.+++..      ++|
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   82 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSD-RDEVKALGQKAEADLEGVD   82 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            457999999999999999999999999999988888776654333223468899999999 7666655431      399


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||+|....        .+++..+++|+.++.++++++.    +.+.++||++||...+....            ...
T Consensus        83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------~~~  150 (245)
T PRK12936         83 ILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNP------------GQA  150 (245)
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCC------------CCc
Confidence            99999987432        2344567899999988888763    34567999999974332111            124


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .|+.+|.+.+.+++       ..++++++++||.+.++.
T Consensus       151 ~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~  189 (245)
T PRK12936        151 NYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAM  189 (245)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCch
Confidence            57788886665543       358999999999987764

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=1.3e-20  Score=155.63  Aligned_cols=162  Identities=19%  Similarity=0.199  Sum_probs=122.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++++++||||+|+||.+++++|+++|++|++++|++...++..   .....++.++.+|+++ .+++.++++      +
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   83 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSD-YEEVTAAIEQLKNELG   83 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            35789999999999999999999999999999999876543321   2123468889999999 777766664      1


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||+|.....        ++++.+++|+.++.++++++.    +.+.+++|++||...+...            .
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------~  151 (239)
T PRK07666         84 SIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGA------------A  151 (239)
T ss_pred             CccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCC------------C
Confidence            399999999864321        234557899999988888874    4556789999997543221            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|.+.+.+++       +.|+++++++||.+.++..
T Consensus       152 ~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~  194 (239)
T PRK07666        152 VTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMA  194 (239)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcch
Confidence            23568889988776653       3589999999999998754

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=1e-20  Score=157.37  Aligned_cols=161  Identities=19%  Similarity=0.216  Sum_probs=119.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-------D  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-------~  135 (252)
                      +++++++||||+|+||+++++.|+++|++|+++.++ .+..+........++.++++|++| .+++.+++..       +
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTD-REQVQAMFATATEHFGKP   81 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHhCCC
Confidence            357899999999999999999999999999887654 333332222122468899999999 7777666542       2


Q ss_pred             CcEEEEcCCCCCC--------------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          136 SEAVVCATGFQPG--------------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       136 ~d~vi~~ag~~~~--------------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                      +|++|||||....              .++.+.+++|+.++.++++++.    +.+.+++|++||.....          
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~----------  151 (253)
T PRK08642         82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN----------  151 (253)
T ss_pred             CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----------
Confidence            8999999986310              1123458899999999999884    34557999999863221          


Q ss_pred             hhccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                        +..++..|+.+|.+.+.+++.       .|++++.|+||.+.++.
T Consensus       152 --~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~  196 (253)
T PRK08642        152 --PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTD  196 (253)
T ss_pred             --CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCch
Confidence              122356799999999987752       58999999999998864

>PRK09242 tropinone reductase; Provisional

Probab=99.85  E-value=1.1e-20  Score=157.74  Aligned_cols=163  Identities=16%  Similarity=0.159  Sum_probs=123.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc---C--CCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D--NPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~--~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .+++|+++||||+|+||++++++|+++|++|++++|+.+..++....   .  ..++.++.+|+++ .+++.+.+..   
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~   84 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD-DEDRRAILDWVED   84 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999987665432211   1  3468889999999 6665544431   


Q ss_pred             ---CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                         ++|+||||+|....        .+++..+++|+.++.++++++.    +.+.++||++||...+...          
T Consensus        85 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~----------  154 (257)
T PRK09242         85 HWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHV----------  154 (257)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCC----------
Confidence               49999999997421        2344567899999999988763    4556799999998654321          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        .....|..+|.+.+.+++       ..|++++.++||.+.++..
T Consensus       155 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~  198 (257)
T PRK09242        155 --RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLT  198 (257)
T ss_pred             --CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCccc
Confidence              224568899998887664       3589999999999988864

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.2e-20  Score=158.30  Aligned_cols=162  Identities=17%  Similarity=0.204  Sum_probs=119.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cC--CCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KD--NPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~--~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ++++++++||||+|+||++++++|+++|++|++++|++++.++...   ..  ..++.++.+|++| .+++.+++..   
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~   83 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD-EADVAAFAAAVEA   83 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC-HHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999998766543221   11  2367889999999 6666554431   


Q ss_pred             ---CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                         ++|+||||||....        .++...+++|+.+..++++.+    ++.+.++||++||...+...          
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  153 (265)
T PRK07062         84 RFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPE----------  153 (265)
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCC----------
Confidence               48999999997431        134456788888877766655    44555799999998543211          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        ..+..|..+|++.+.+.+       +.|++++.|+||.+.++.
T Consensus       154 --~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~  196 (265)
T PRK07062        154 --PHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQ  196 (265)
T ss_pred             --CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccch
Confidence              123568888888776553       368999999999998875

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.85  E-value=1.2e-20  Score=157.28  Aligned_cols=163  Identities=16%  Similarity=0.123  Sum_probs=121.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhhccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      ++++++++||||+|+||.+++++|+++|++|+++++.... ..+.+.....++..+++|++| .+++.++++.      +
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRK-IDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence            4568999999999999999999999999999988765432 112222123467889999999 7666665542      4


Q ss_pred             CcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       136 ~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      +|++|||||....        .+++..+++|+.++.++++++.    +.+ -+++|++||...+...            .
T Consensus        86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~  153 (253)
T PRK08993         86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG------------I  153 (253)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC------------C
Confidence            9999999997431        2355678999999998888873    332 2589999998655322            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|++.+.+.+       +.|++++.++||.+.++..
T Consensus       154 ~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~  196 (253)
T PRK08993        154 RVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNT  196 (253)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcch
Confidence            13578899999887664       3589999999999998753

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.85  E-value=1.6e-20  Score=157.63  Aligned_cols=163  Identities=17%  Similarity=0.150  Sum_probs=123.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++.+++++||||+|+||.+++++|+++|++|+++.|+.++.++..   .....++.++++|++| .+++.+++..     
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   85 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD-EDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhC
Confidence            456899999999999999999999999999999999876654322   1123468899999999 7766665532     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||+|....        .++...+++|+.++..+++.+    ++.+.++||++||......            .
T Consensus        86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~  153 (265)
T PRK07097         86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELG------------R  153 (265)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCC------------C
Confidence             48999999997542        124455789999988777776    3456679999999643111            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..+..|+.+|.+.+.+.+       +.|++++.|+||.+.++..
T Consensus       154 ~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~  197 (265)
T PRK07097        154 ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQT  197 (265)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccch
Confidence            234678999999887664       3589999999999988753

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.85  E-value=1.9e-20  Score=156.19  Aligned_cols=163  Identities=18%  Similarity=0.208  Sum_probs=122.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++++|+||||+|+||++++++|+++|++|++++|+.+..+...   .....++.++.+|++| .+++.+++..     
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~   86 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFALSKL   86 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            456899999999999999999999999999999998876543321   1123468889999999 7666655432     


Q ss_pred             -CCcEEEEcCCCCCC-------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 -DSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 -~~d~vi~~ag~~~~-------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                       ++|+||||+|....       .+++..+++|+.++.++++++.    +.+.+++|++||......            ..
T Consensus        87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------~~  154 (255)
T PRK06113         87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK------------NI  154 (255)
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCC------------CC
Confidence             48999999986432       1233447899999999999885    344469999999754211            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..|+.+|++.+.+++       ..|++++++.||.+.++..
T Consensus       155 ~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~  197 (255)
T PRK06113        155 NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDAL  197 (255)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccc
Confidence            34679999999987764       2589999999999988753

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.1e-20  Score=159.33  Aligned_cols=162  Identities=23%  Similarity=0.284  Sum_probs=122.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc---C--CCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D--NPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~--~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++++++||||+|+||+++++.|+++|++|++++|+++..+.....   .  ..++.++.+|++| .+++.+.+..    
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   83 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD-EDQVARAVDAATAW   83 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999987654332211   1  2468889999999 6666665541    


Q ss_pred             --CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 --DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 --~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        ++|+||||+|....         .++...+++|+.++.++++++.+    .+.++||++||...+...          
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~----------  153 (276)
T PRK05875         84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTH----------  153 (276)
T ss_pred             cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCC----------
Confidence              38999999985321         12345678899999999887643    344689999998654221          


Q ss_pred             ccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                        ...+.|+.+|++.|.+++.       .++++++++||.+.++..
T Consensus       154 --~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~  197 (276)
T PRK05875        154 --RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLV  197 (276)
T ss_pred             --CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccc
Confidence              2347799999999987752       479999999999988754

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.8e-20  Score=153.05  Aligned_cols=151  Identities=20%  Similarity=0.222  Sum_probs=116.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-----CCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-----DSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----~~d~v  139 (252)
                      .+|+++||||+|+||++++++|+++|++|+++.|+.+..        ...+++.+|++| .+++.+.+..     ++|+|
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~d~v   72 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD--------FPGELFACDLAD-IEQTAATLAQINEIHPVDAI   72 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc--------cCceEEEeeCCC-HHHHHHHHHHHHHhCCCcEE
Confidence            468999999999999999999999999999999986531        123578999999 7766665541     38999


Q ss_pred             EEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          140 VCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       140 i~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      |||+|.....        ++...+++|+.++.++.+++    ++.+.+++|++||...|+..             ....|
T Consensus        73 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------~~~~Y  139 (234)
T PRK07577         73 VNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL-------------DRTSY  139 (234)
T ss_pred             EECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC-------------CchHH
Confidence            9999975421        23345788999987776665    55667899999998655321             13678


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+|.+.+.+++       +.|+++++++||.+.++.
T Consensus       140 ~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~  176 (234)
T PRK07577        140 SAAKSALVGCTRTWALELAEYGITVNAVAPGPIETEL  176 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcc
Confidence            999998887654       358999999999998875

>PRK05865 hypothetical protein; Provisional

Probab=99.85  E-value=2.7e-20  Score=175.81  Aligned_cols=132  Identities=21%  Similarity=0.330  Sum_probs=115.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|+||||+||||++++++|+++|++|++++|+....   .   ..+++++.+|++| .+++.+++.+ +|+|||||+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~---~---~~~v~~v~gDL~D-~~~l~~al~~-vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS---W---PSSADFIAADIRD-ATAVESAMTG-ADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh---c---ccCceEEEeeCCC-HHHHHHHHhC-CCEEEECCCcc
Confidence            4799999999999999999999999999999875321   1   1368899999999 8889999998 99999999864


Q ss_pred             CCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCcEE
Q 025456          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT  226 (252)
Q Consensus       147 ~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~~  226 (252)
                      ..     .+++|+.++.+++++|++.++++||++||..                          |.++|+++++++++++
T Consensus        73 ~~-----~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~--------------------------K~aaE~ll~~~gl~~v  121 (854)
T PRK05865         73 GR-----NDHINIDGTANVLKAMAETGTGRIVFTSSGH--------------------------QPRVEQMLADCGLEWV  121 (854)
T ss_pred             cc-----hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH--------------------------HHHHHHHHHHcCCCEE
Confidence            32     4689999999999999999999999999851                          7888998888999999


Q ss_pred             EEeCCcccCCC
Q 025456          227 IIRPGGLRNEP  237 (252)
Q Consensus       227 ~lrPg~i~~~~  237 (252)
                      ++||+++||+.
T Consensus       122 ILRp~~VYGP~  132 (854)
T PRK05865        122 AVRCALIFGRN  132 (854)
T ss_pred             EEEeceEeCCC
Confidence            99999999985

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.4e-20  Score=156.81  Aligned_cols=158  Identities=17%  Similarity=0.162  Sum_probs=121.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..   .  ...++.++++|++| .+++.+.+..      ++
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~---~--~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   76 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET---V--DGRPAEFHAADVRD-PDQVAALVDAIVERHGRL   76 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh---h--cCCceEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            35689999999999999999999999999999999987541   1  23468899999999 6666665532      38


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh-----cCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK-----RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~-----~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |+||||||.....        +++..+++|+.++.++++++..     .+.++||++||...+..            ...
T Consensus        77 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~------------~~~  144 (252)
T PRK07856         77 DVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRP------------SPG  144 (252)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCC------------CCC
Confidence            9999999964321        2345678999999999998743     23468999999854321            122


Q ss_pred             hhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                      +..|..+|.+.+.+++.      ..++++.++||.+.++..
T Consensus       145 ~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~  185 (252)
T PRK07856        145 TAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQS  185 (252)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHH
Confidence            46799999999887652      238999999999988753

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.85  E-value=1.3e-20  Score=156.87  Aligned_cols=158  Identities=23%  Similarity=0.201  Sum_probs=118.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHH-------HcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEA-------IGDD  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~-------~~~~  135 (252)
                      +++++||||+|+||++++++|+++|++|++++|+.+..+....   ....++.++.+|++| .+++.++       +.+ 
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~-   78 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK-EDEIADMIAAAAAEFGG-   78 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhcCC-
Confidence            4689999999999999999999999999999998765543221   123468899999999 7655443       344 


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+|||++|.....        +++..+++|+.++.++++.+    ++.+.+++|++||...+...            ..
T Consensus        79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~------------~~  146 (255)
T TIGR01963        79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVAS------------PF  146 (255)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCC------------CC
Confidence            89999999864321        12344678999988887776    56677899999997554321            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|..+|.+.+.+.+       ..+++++++|||.++++.
T Consensus       147 ~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~  187 (255)
T TIGR01963       147 KSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPL  187 (255)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHH
Confidence            3567888887776654       248999999999998874

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=1.9e-20  Score=156.14  Aligned_cols=160  Identities=19%  Similarity=0.207  Sum_probs=118.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhh---ccccCCCCeEEEEeeCCCChHHHHHHHc------CC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKT---TLSKDNPSLQIVKADVTEGSAKLSEAIG------DD  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~  135 (252)
                      +|+++||||+|+||++++++|+++|++|++++|+... ..+   .+.....++.++.+|++| .+++.++++      ++
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVAD-LSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence            4799999999999999999999999999999986532 221   111123468999999999 666655543      14


Q ss_pred             CcEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHHHHhc-----C-----CCEEEEEccceeeccCCCCCCC
Q 025456          136 SEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRKR-----G-----VNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       136 ~d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~~~~-----~-----~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                      +|+||||+|....          .++++.+++|+.++.++++++.+.     +     .++||++||...+...      
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------  154 (256)
T PRK12745         81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS------  154 (256)
T ss_pred             CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC------
Confidence            8999999986431          223455789999999998887431     1     4679999997653221      


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                            ...+.|+.+|.+.+.+.+       ++|+++++++||.+.++..
T Consensus       155 ------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~  198 (256)
T PRK12745        155 ------PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMT  198 (256)
T ss_pred             ------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccc
Confidence                  123578899999887654       3689999999999988753

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.85  E-value=6.6e-20  Score=153.57  Aligned_cols=159  Identities=15%  Similarity=0.207  Sum_probs=121.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      +++++||||+|+||.++++.|+++|++|++++|+....+...   .....++.++.+|++| .+++.+++..      ++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSD-AEACERLIEAAVARFGGI   79 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999999876544321   2234568899999999 7776665541      38


Q ss_pred             cEEEEcCCCCCCCC---------CCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPGWD---------LFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~~~---------~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||+|......         +.+.+++|+.++.++++.+..   .+.+++|++||...+...            ...
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~  147 (263)
T PRK06181         80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGV------------PTR  147 (263)
T ss_pred             CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCC------------CCc
Confidence            99999998754321         123478999999999998842   234689999997655321            224


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|.+.+.+.+       +.++++++++||.+.++.
T Consensus       148 ~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~  187 (263)
T PRK06181        148 SGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDI  187 (263)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCc
Confidence            679999999887764       358999999999998875

>PRK12742 oxidoreductase; Provisional

Probab=99.85  E-value=1.3e-20  Score=155.26  Aligned_cols=161  Identities=17%  Similarity=0.247  Sum_probs=118.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi  140 (252)
                      +++++++||||+|+||++++++|+++|++|+++.|+ .+..++...  ..++.++.+|++| .+++.+.+..  ++|++|
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~--~~~~~~~~~D~~~-~~~~~~~~~~~~~id~li   80 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ--ETGATAVQTDSAD-RDAVIDVVRKSGALDILV   80 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH--HhCCeEEecCCCC-HHHHHHHHHHhCCCcEEE
Confidence            458999999999999999999999999999887664 333332221  1246788899999 7767666543  499999


Q ss_pred             EcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHH
Q 025456          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       141 ~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~s  210 (252)
                      ||+|....        .+++..+++|+.++.+++..+...  +.+++|++||......           +......|+.+
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~~~~~Y~~s  149 (237)
T PRK12742         81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRM-----------PVAGMAAYAAS  149 (237)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccC-----------CCCCCcchHHh
Confidence            99987432        134566889999999887666432  2368999999743110           11234679999


Q ss_pred             HHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          211 KLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       211 K~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |++.+.+++       +.|+++++|+||.+.++..
T Consensus       150 Kaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~  184 (237)
T PRK12742        150 KSALQGMARGLARDFGPRGITINVVQPGPIDTDAN  184 (237)
T ss_pred             HHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcc
Confidence            999987664       3589999999999988753

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.85  E-value=2.3e-20  Score=155.74  Aligned_cols=163  Identities=20%  Similarity=0.227  Sum_probs=123.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .++++++++||||+|+||++++++|+++|++|++++|+++..+...   .....++.++.+|++| .+++.+++++    
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   85 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD-EEAVAAAFARIDAE   85 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHh
Confidence            3457899999999999999999999999999999999876544322   1133468899999999 6666655542    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||+|....        .++++.+++|+.++.++.+.+    ++.+.++||++||...+...           
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~-----------  154 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVAR-----------  154 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCC-----------
Confidence              48999999996432        123455789999998888666    34566899999997543211           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       .....|+.+|.+.+.+++       ..+++++.|+||.+.++.
T Consensus       155 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~  197 (256)
T PRK06124        155 -AGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATET  197 (256)
T ss_pred             -CCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcc
Confidence             123678899998877654       248999999999999885

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.4e-20  Score=158.71  Aligned_cols=163  Identities=16%  Similarity=0.194  Sum_probs=122.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-h---hccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-K---TTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .+++|+++||||+|+||.+++++|+++|++|++++|+.+.. +   +.+.....++.++.+|++| .+++.+.+..    
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~i~~~  121 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD-EAFCKDAVEETVRE  121 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999998875322 1   1122123468899999999 6666655532    


Q ss_pred             --CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 --DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 --~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                        ++|+||||||....         .++...+++|+.++.++++++...  ..++||++||...|....           
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~-----------  190 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNE-----------  190 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCC-----------
Confidence              48999999986431         123456889999999999998642  235899999987654321           


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                       ....|..+|.+.+.+.+       ..|++++.|+||.+.++..
T Consensus       191 -~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~  233 (290)
T PRK06701        191 -TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLI  233 (290)
T ss_pred             -CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccc
Confidence             13468899998887654       2589999999999998753

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.2e-20  Score=154.70  Aligned_cols=157  Identities=17%  Similarity=0.186  Sum_probs=118.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc----------CC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG----------DD  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~----------~~  135 (252)
                      |++++||||+|+||++++++|+++|++|++++|+.+...  ......++.++++|++| .+++.+.+.          ++
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~~~~   77 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSL--AAAAGERLAEVELDLSD-AAAAAAWLAGDLLAAFVDGAS   77 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhh--hhccCCeEEEEEeccCC-HHHHHHHHHHHHHHHhccCCC
Confidence            468999999999999999999999999999999865322  11123468899999999 666665321          14


Q ss_pred             CcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       136 ~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      +|++|||+|....         .+++..+++|+.++..+++.+    ++.+.++||++||...+..            ..
T Consensus        78 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------~~  145 (243)
T PRK07023         78 RVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNA------------YA  145 (243)
T ss_pred             ceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCC------------CC
Confidence            8999999986432         123566899999977766655    3445579999999864421            23


Q ss_pred             hhhHHHHHHHHHHHHHH------HcCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIR------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~------~~gi~~~~lrPg~i~~~~  237 (252)
                      .+..|+.+|.+.|.+++      ..+++++.|+||.+.++.
T Consensus       146 ~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~  186 (243)
T PRK07023        146 GWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTGM  186 (243)
T ss_pred             CchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccHH
Confidence            45789999999998775      248999999999997764

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.7e-20  Score=156.30  Aligned_cols=162  Identities=17%  Similarity=0.169  Sum_probs=122.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+|+||.+++++|+++|++|++++|+.+..++.   +.....++.++.+|++| .+++.+++..      
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTR-DAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence            4679999999999999999999999999999999987654332   22234568899999999 6666655432      


Q ss_pred             CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||+|....         .++++.+++|+.++.++++++    ++.+.+++|++||...+...            
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~------------  151 (253)
T PRK06172         84 RLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAA------------  151 (253)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC------------
Confidence            38999999986421         134456789999987776654    44555799999998654322            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..+..|..+|++.+.+.+       ..|++++++.||.+.++..
T Consensus       152 ~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~  195 (253)
T PRK06172        152 PKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMF  195 (253)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhh
Confidence            234679999999887664       2479999999999988753

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.85  E-value=1.7e-20  Score=157.45  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=117.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++++++||||+|+||++++++|+++|++|++++|+.....      ..++.++.+|++| .+++.+++..      ++
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~------~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~i   78 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ------HENYQFVPTDVSS-AEEVNHTVAEIIEKFGRI   78 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc------cCceEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            456899999999999999999999999999999998765432      2468889999999 6666655432      48


Q ss_pred             cEEEEcCCCCCC-----------------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCC
Q 025456          137 EAVVCATGFQPG-----------------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       137 d~vi~~ag~~~~-----------------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                      |+||||||....                 .+++..+++|+.++.++++++.    +.+.++||++||...+...      
T Consensus        79 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------  152 (266)
T PRK06171         79 DGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGS------  152 (266)
T ss_pred             CEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCC------
Confidence            999999996421                 1233467899999999988875    3344689999998543211      


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCccc
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLR  234 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~  234 (252)
                            .....|+.+|.+.+.+.+       ..|+++++|+||.+.
T Consensus       153 ------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~  192 (266)
T PRK06171        153 ------EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE  192 (266)
T ss_pred             ------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence                  124678999999887664       358999999999885

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.9e-20  Score=162.33  Aligned_cols=161  Identities=16%  Similarity=0.168  Sum_probs=120.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .++++++++      +
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d-~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD-AEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHHHCC
Confidence            45799999999999999999999999999999999877654322   1134568899999999 777766543      1


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHH----HHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNL----VEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~l----l~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|++|||+|....        .+++..+++|+.++.++    ++.+++.+.++||++||...+...            .
T Consensus        85 ~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~------------~  152 (334)
T PRK07109         85 PIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSI------------P  152 (334)
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCC------------C
Confidence            49999999996432        12345578888876664    444556666799999998765321            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------H--cCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------K--SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~--~gi~~~~lrPg~i~~~~  237 (252)
                      ....|..+|++.+.+.+       .  .++++++|+||.+.++.
T Consensus       153 ~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~  196 (334)
T PRK07109        153 LQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQ  196 (334)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCch
Confidence            24679999998776543       1  36999999999998874

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.85  E-value=4e-20  Score=153.49  Aligned_cols=161  Identities=21%  Similarity=0.287  Sum_probs=120.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++||||+|+||++++++|+++|++|++++|+++..++...   .  ...+++++++|++| .+++.+.+..      
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND-HDQVFEVFAEFRDELG   80 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            6899999999999999999999999999999999876543221   1  13468899999999 6666554431      


Q ss_pred             CCcEEEEcCCCCCCCC--------CCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGWD--------LFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~~--------~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||+.....        +...+++|+.++.++++++    ++.+.++||++||.......           ..
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~  149 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL-----------PG  149 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC-----------CC
Confidence            3999999999754321        2345689999998888876    35566799999997543211           11


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +...|+.+|++.+.+.+       ..++++++++||++.++..
T Consensus       150 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~  192 (248)
T PRK08251        150 VKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMN  192 (248)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhh
Confidence            24678999998886653       2479999999999988754

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.85  E-value=5.4e-20  Score=153.57  Aligned_cols=161  Identities=19%  Similarity=0.247  Sum_probs=116.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchh-hhhc---ccc-CCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDK-AKTT---LSK-DNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-~~~~---~~~-~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .+++|+||||+|+||++++++|+++| ++|++++|+++. .++.   +.. ...+++++++|++| .+++.+.++     
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~-~~~~~~~~~~~~~~   85 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD-TDSHPKVIDAAFAG   85 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC-hHHHHHHHHHHHhc
Confidence            36899999999999999999999995 999999998765 3321   111 22368999999999 655443332     


Q ss_pred             CCCcEEEEcCCCCCC--CCCC------CcceehHHHHHH----HHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          134 DDSEAVVCATGFQPG--WDLF------APWKVDNFGTVN----LVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~--~~~~------~~~~~n~~g~~~----ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      +++|++|||+|....  ..+.      +.+++|+.++.+    +++.+++.+.++||++||...+..            .
T Consensus        86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~------------~  153 (253)
T PRK07904         86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERV------------R  153 (253)
T ss_pred             CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCC------------C
Confidence            249999999987532  1121      247899988776    566667777789999999753211            0


Q ss_pred             chhhHHHHHHHHHHHHH-------HHcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~-------~~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|++.+.+.       +.+++++++++||++.++..
T Consensus       154 ~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~  197 (253)
T PRK07904        154 RSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMS  197 (253)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchh
Confidence            12345889999876543       34689999999999988643

>PLN02778 3,5-epimerase/4-reductase

Probab=99.85  E-value=2.1e-20  Score=159.58  Aligned_cols=147  Identities=17%  Similarity=0.161  Sum_probs=107.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag  144 (252)
                      .|+||||||+||||++|++.|+++|++|+...                     .|+.| .+.+...+.. ++|+|||+||
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~---------------------~~~~~-~~~v~~~l~~~~~D~ViH~Aa   66 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS---------------------GRLEN-RASLEADIDAVKPTHVFNAAG   66 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEEec---------------------CccCC-HHHHHHHHHhcCCCEEEECCc
Confidence            47899999999999999999999999987432                     23444 4555555553 3899999998


Q ss_pred             CCCC-------CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCC------CCCCCcchhccchhhHHHHHH
Q 025456          145 FQPG-------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM------GQILNPAYIFLNVFGLTLIAK  211 (252)
Q Consensus       145 ~~~~-------~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~------~~~~~~~~~~~~~~~~y~~sK  211 (252)
                      ....       .++.+.+++|+.|+.+++++|++.+++ ++++||..+|+...      +.+..+++.+..+.+.|+.+|
T Consensus        67 ~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~Yg~sK  145 (298)
T PLN02778         67 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSFYSKTK  145 (298)
T ss_pred             ccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCCCCCCCCchHHHH
Confidence            7532       233456789999999999999999985 56667777776432      112344444444447899999


Q ss_pred             HHHHHHHHHcCCcEEEEeCCcccCC
Q 025456          212 LQAEQYIRKSGINYTIIRPGGLRNE  236 (252)
Q Consensus       212 ~~~e~~~~~~gi~~~~lrPg~i~~~  236 (252)
                      .++|.+++.+. +..++|++..+++
T Consensus       146 ~~~E~~~~~y~-~~~~lr~~~~~~~  169 (298)
T PLN02778        146 AMVEELLKNYE-NVCTLRVRMPISS  169 (298)
T ss_pred             HHHHHHHHHhh-ccEEeeecccCCc
Confidence            99999987653 5677888765554

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.84  E-value=5.7e-20  Score=152.35  Aligned_cols=162  Identities=17%  Similarity=0.176  Sum_probs=121.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc----hhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHc---
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL----DKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG---  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~----~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~---  133 (252)
                      +++++++||||+|+||++++++|+++|++|++++|..    +..++.   ......++.++.+|++| .+++.+.+.   
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~   82 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRD-FAATRAALDAGV   82 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHH
Confidence            3578999999999999999999999999999877642    222211   11123568899999999 777766653   


Q ss_pred             ---CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH-----hcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          134 ---DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       134 ---~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~-----~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                         +++|+||||+|.....        ++...+++|+.++.++++++.     +.+.+++|++||...+...        
T Consensus        83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------  154 (249)
T PRK12827         83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGN--------  154 (249)
T ss_pred             HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCC--------
Confidence               1389999999975421        233457899999999999987     4566799999997654321        


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                          ..+..|..+|++.+.+++       ..++++++++||.+.++..
T Consensus       155 ----~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~  198 (249)
T PRK12827        155 ----RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMA  198 (249)
T ss_pred             ----CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcc
Confidence                224568899998776654       2489999999999998764

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.84  E-value=3.4e-20  Score=153.24  Aligned_cols=164  Identities=22%  Similarity=0.207  Sum_probs=122.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++++++||||+|+||.+++++|+++|++|++++|++++.....   .....++.++.+|++| .+++.+++.+     
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD-EAAVRALIEAAVEAF   80 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            345789999999999999999999999999999999876643322   1134568899999999 6666655542     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       .+|+|||++|.....        ++...++.|+.++.++++++.    +.+.++||++||......            .
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~------------~  148 (246)
T PRK05653         81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTG------------N  148 (246)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccC------------C
Confidence             379999999864321        123457889999999888873    556789999999743211            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..+..|..+|.+.+.+.+       +.+++++++|||.+.++...
T Consensus       149 ~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~  193 (246)
T PRK05653        149 PGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTE  193 (246)
T ss_pred             CCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchh
Confidence            234668888987765543       35899999999999887643

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.2e-20  Score=153.64  Aligned_cols=173  Identities=18%  Similarity=0.210  Sum_probs=136.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCc--hhhhhccc-cCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDL--DKAKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~--~~~~~~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      ++++||||.||||++.++.+...  .++.+.++.=.  ..+..+.+ ...++.+++++|+.+ ...+.-.+.. ++|.|+
T Consensus         7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~-~~~~~~~~~~~~id~vi   85 (331)
T KOG0747|consen    7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIAD-ADLVLYLFETEEIDTVI   85 (331)
T ss_pred             ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccc-hHHHHhhhccCchhhhh
Confidence            89999999999999999999986  35555544311  11111111 145789999999999 6666666654 699999


Q ss_pred             EcCCCCC----CCCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHH
Q 025456          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (252)
Q Consensus       141 ~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (252)
                      |.|+..+    ..++.+....|+.++..|+++++.. ++++||++||..|||++.+...+.+....+|.++|+++|+++|
T Consensus        86 hfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKaAaE  165 (331)
T KOG0747|consen   86 HFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKAAAE  165 (331)
T ss_pred             hhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHHHHH
Confidence            9998654    3456677789999999999999988 5899999999999999877665545567788999999999999


Q ss_pred             HHHH----HcCCcEEEEeCCcccCCCCCC
Q 025456          216 QYIR----KSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       216 ~~~~----~~gi~~~~lrPg~i~~~~~~~  240 (252)
                      .+++    ++|++++++|.++||||.+..
T Consensus       166 ~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~  194 (331)
T KOG0747|consen  166 MLVRSYGRSYGLPVVTTRMNNVYGPNQYP  194 (331)
T ss_pred             HHHHHHhhccCCcEEEEeccCccCCCcCh
Confidence            9876    478999999999999998643

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.84  E-value=4.2e-20  Score=153.66  Aligned_cols=156  Identities=15%  Similarity=0.201  Sum_probs=120.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+.  ..    ....++.++++|++| .+++.+.+++      ++|
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--~~----~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   78 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--LT----QEDYPFATFVLDVSD-AAAVAQVCQRLLAETGPLD   78 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--hh----hcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            5679999999999999999999999999999999976  11    123568899999999 7777666542      389


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||+|.....        ++...+++|+.++.++++++.    +.+.++||++||......            ...+.
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~------------~~~~~  146 (252)
T PRK08220         79 VLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVP------------RIGMA  146 (252)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccC------------CCCCc
Confidence            999999875321        234567899999999988873    345578999999743211            12346


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|.+.+.+.+       .+|+++++++||.+.++..
T Consensus       147 ~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~  186 (252)
T PRK08220        147 AYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQ  186 (252)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhh
Confidence            78999998887663       3689999999999998853

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.84  E-value=7.8e-20  Score=150.51  Aligned_cols=161  Identities=20%  Similarity=0.192  Sum_probs=120.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-CCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      +++++++||||+|+||++++++|+++|++|++++|++.+..+.... ....++++.+|++| .+++.+.++.      ++
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~   83 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVD-PQAARRAVDEVNRQFGRL   83 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCC-HHHHHHHHHHHHHHhCCc
Confidence            4579999999999999999999999999999999987654332211 12457888999999 6666655541      38


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+|||++|.....        ++.+.+++|+.++.++++++.    +.+.+++|++||...++..            ...
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~  151 (239)
T PRK12828         84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG------------PGM  151 (239)
T ss_pred             CEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC------------CCc
Confidence            9999999864311        123446799999999888873    4567899999998765432            124


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|..+|.+.+.+++       +.++++++++||+++++.
T Consensus       152 ~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~  191 (239)
T PRK12828        152 GAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPP  191 (239)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcc
Confidence            568888987776553       358999999999999874

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.84  E-value=3.1e-20  Score=153.74  Aligned_cols=161  Identities=16%  Similarity=0.161  Sum_probs=123.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi  140 (252)
                      ++++++++||||+|+||+++++.|+++|++|++++|+.++.++...  ..+..++.+|++| .+++.+.+..  ++|+||
T Consensus         6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~~D~~~-~~~v~~~~~~~~~~d~vi   82 (245)
T PRK07060          6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG--ETGCEPLRLDVGD-DAAIRAALAAAGAFDGLV   82 (245)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--HhCCeEEEecCCC-HHHHHHHHHHhCCCCEEE
Confidence            3567999999999999999999999999999999998766544322  1246788999999 7777776653  489999


Q ss_pred             EcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----cC-CCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||+|....        .++++.+++|+.++.++++++.+    .+ .++||++||...+...            ..+..|
T Consensus        83 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~y  150 (245)
T PRK07060         83 NCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL------------PDHLAY  150 (245)
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC------------CCCcHh
Confidence            99987542        12445567999999999988854    22 3689999997654321            124679


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..+|.+++.+++       ..+++++.++||.+.++..
T Consensus       151 ~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~  188 (245)
T PRK07060        151 CASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMA  188 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchh
Confidence            999999987654       2489999999999998763

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.84  E-value=6.1e-20  Score=153.18  Aligned_cols=163  Identities=23%  Similarity=0.312  Sum_probs=123.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++++++||||+|+||++++++|+++|++|+++.|+.+..++...   ....++.++.+|+++ .+++.+.+..     
T Consensus         6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   84 (258)
T PRK06949          6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD-YQSIKAAVAHAETEA   84 (258)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHhc
Confidence            4568999999999999999999999999999999999876544322   123468899999999 7777666542     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC--------CCEEEEEccceeeccCCCCC
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG--------VNRFILISSILVNGAAMGQI  193 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~--------~~~~v~~SS~~v~~~~~~~~  193 (252)
                       ++|+||||+|....        .+++..+++|+.++.++++++.    +..        .+++|++||...+..     
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----  159 (258)
T PRK06949         85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRV-----  159 (258)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCC-----
Confidence             48999999996432        1344567899999998888764    221        258999999754421     


Q ss_pred             CCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                             ......|+.+|.+.+.+.+       ..++++++|+||++.++..
T Consensus       160 -------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~  204 (258)
T PRK06949        160 -------LPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEIN  204 (258)
T ss_pred             -------CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcc
Confidence                   1224678899998877654       2589999999999998764

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.5e-20  Score=155.96  Aligned_cols=162  Identities=17%  Similarity=0.191  Sum_probs=120.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-CCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.+..+..... ...++.++.+|++| ++++.+++..      ++
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~   87 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVAD-PAQVERVFDTAVERFGGL   87 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC-HHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999999999999987655432211 11257889999999 7766655531      39


Q ss_pred             cEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCC-CEEEEEccceeeccCCCCCCCcchhccc
Q 025456          137 EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGV-NRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       137 d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~-~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      |+|||++|....         .++...+++|+.++.++++++    +..+. ++|+++||......            ..
T Consensus        88 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~------------~~  155 (264)
T PRK12829         88 DVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLG------------YP  155 (264)
T ss_pred             CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccC------------CC
Confidence            999999997521         123456789999999988887    33444 57888887643211            11


Q ss_pred             hhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..|+.+|.+.|.+++.       .+++++++|||+++++..
T Consensus       156 ~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~  198 (264)
T PRK12829        156 GRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRM  198 (264)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHH
Confidence            235688999988877642       489999999999988753

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.84  E-value=4.9e-20  Score=152.64  Aligned_cols=159  Identities=19%  Similarity=0.269  Sum_probs=119.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCChHHHHHHHcC---CCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD---DSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~---~~d~  138 (252)
                      ||+++||||+|+||.+++++|+++|++|++++|+++..+....    ....+++++++|++| .+++.+.+.+   ++|+
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILD-TASHAAFLDSLPALPDI   79 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC-hHHHHHHHHHHhhcCCE
Confidence            4799999999999999999999999999999999876543221    123578999999999 7777766553   3799


Q ss_pred             EEEcCCCCCCC-----C---CCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPGW-----D---LFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~~-----~---~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ||||+|.....     +   +.+.+++|+.++.++++++.    +.+.++||++||.......            .....
T Consensus        80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~  147 (243)
T PRK07102         80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGR------------ASNYV  147 (243)
T ss_pred             EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCC------------CCCcc
Confidence            99999864321     1   22457899999999988864    3466799999997432111            12346


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      |+.+|.+.+.+.+       +.|+++++++||.+.++.
T Consensus       148 Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~  185 (243)
T PRK07102        148 YGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPM  185 (243)
T ss_pred             cHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChh
Confidence            8899998876653       358999999999998874

>PRK09135 pteridine reductase; Provisional

Probab=99.84  E-value=8.2e-20  Score=151.37  Aligned_cols=161  Identities=17%  Similarity=0.156  Sum_probs=118.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhhc---ccc-CCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTT---LSK-DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~---~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++++||||+||||++++++|+++|++|++++|+... .+..   +.. ....+.++.+|++| .+++.+++..     
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   83 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD-PDALPELVAACVAAF   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999986432 2211   111 12458889999999 7777666542     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                       ++|+||||+|....        .+++..+++|+.++.++++++...   ..+.++++++...            ..+.+
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  151 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHA------------ERPLK  151 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhh------------cCCCC
Confidence             38999999986432        123456789999999999998532   2246776665421            11234


Q ss_pred             hhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                      +...|+.+|+++|.+++.      .++++++++||+++++..
T Consensus       152 ~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~  193 (249)
T PRK09135        152 GYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPED  193 (249)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccc
Confidence            567899999999987753      269999999999999874

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.84  E-value=6.7e-20  Score=151.05  Aligned_cols=162  Identities=20%  Similarity=0.246  Sum_probs=120.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+++...+....  ...+++++++|++| .+++.+.+.+      +
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   82 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRD-EADVQRAVDAIVAAFGG   82 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            3478999999999999999999999999999999988665433221  11568899999999 7766665541      3


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      +|+|||++|.....        ++.+.+++|+.++.++++++.+   .+.+++|++||...+..            ....
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~~~  150 (237)
T PRK07326         83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNF------------FAGG  150 (237)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccC------------CCCC
Confidence            99999999864321        1335578899999998888753   34568999999754321            1224


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..|..+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       151 ~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~  191 (237)
T PRK07326        151 AAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFN  191 (237)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccc
Confidence            568889987776543       3589999999999987653

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.84  E-value=6.1e-20  Score=153.19  Aligned_cols=160  Identities=18%  Similarity=0.180  Sum_probs=118.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++++|+||||+|+||.+++++|+++|++|++++|+.+..++.....  ...++++|++| .+++.+.+..      ++|
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~--~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   81 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV--GGLFVPTDVTD-EDAVNALFDTAAETYGSVD   81 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc--CCcEEEeeCCC-HHHHHHHHHHHHHHcCCCC
Confidence            56899999999999999999999999999999999876554332211  23678999999 7777666642      489


Q ss_pred             EEEEcCCCCCCC----------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccce-eeccCCCCCCCcchhccc
Q 025456          138 AVVCATGFQPGW----------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSIL-VNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       138 ~vi~~ag~~~~~----------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~-v~~~~~~~~~~~~~~~~~  202 (252)
                      +||||+|.....          +++..+++|+.++.++++.+    ++.+.+++|++||.. +++..            .
T Consensus        82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~------------~  149 (255)
T PRK06057         82 IAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSA------------T  149 (255)
T ss_pred             EEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCC------------C
Confidence            999999864311          13455789999988877765    345557899999863 33321            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..|+.+|++.+.+.+       ..|+++++++||++.++..
T Consensus       150 ~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~  192 (255)
T PRK06057        150 SQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLL  192 (255)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchh
Confidence            23568899987665543       3589999999999988764

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.84  E-value=3.9e-20  Score=156.17  Aligned_cols=160  Identities=15%  Similarity=0.202  Sum_probs=116.1

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCch---hhhhccccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      +++|+++||||+  ++||++++++|+++|++|++.+|+..   ..++........ .++++|++| .+++.++++     
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d-~~~v~~~~~~i~~~   80 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSK-PEHFKSLAESLKKD   80 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCC-HHHHHHHHHHHHHH
Confidence            468999999997  79999999999999999999988742   222221111223 678999999 666665543     


Q ss_pred             -CCCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcch
Q 025456          134 -DDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                       +++|++|||||+...            .+++..+++|+.++.++++.+...  .-++||++||.....           
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~-----------  149 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK-----------  149 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc-----------
Confidence             249999999997421            134556899999998888877421  125899999874221           


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       +...+..|..+|++.+.+.+       .+|+++++|.||.+.++.
T Consensus       150 -~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~  194 (274)
T PRK08415        150 -YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLA  194 (274)
T ss_pred             -CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHH
Confidence             01124679999999887654       368999999999998864

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.4e-19  Score=152.29  Aligned_cols=159  Identities=15%  Similarity=0.196  Sum_probs=119.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------CCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------DDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d  137 (252)
                      |+++||||+|+||++++++|+++|++|++++|+.+..+...   ...+.++.++++|++| .+++.+.+.      +++|
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD-YSQLTALAQACEEKWGGID   79 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            47999999999999999999999999999999876654322   1234578899999999 666666554      1499


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHH----HHhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEA----CRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~----~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||+|.....        +++..+++|+.++.++.+.    +++.+.++||++||...+...            ....
T Consensus        80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~------------~~~~  147 (270)
T PRK05650         80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQG------------PAMS  147 (270)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCC------------CCch
Confidence            999999975422        2334568998888776665    456677899999998554221            2246


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|..+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       148 ~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~  187 (270)
T PRK05650        148 SYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLL  187 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcc
Confidence            78999998765543       2589999999999988753

>PRK12743 oxidoreductase; Provisional

Probab=99.84  E-value=3.6e-20  Score=154.70  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=118.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++||||+|+||++++++|+++|++|+++.++. +..+.   .+.....++.++.+|++| .+++.+++..      +
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD-LPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999998886543 33222   111134578999999999 6666554432      4


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cC-CCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      +|+||||+|.....        ++...+++|+.++.++++++..    .+ .++||++||.....            +..
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~~~  148 (256)
T PRK12743         81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT------------PLP  148 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC------------CCC
Confidence            99999999875421        2345578999999999988743    22 35899999974211            122


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|++.+.+++       ..|++++.|+||.+.++..
T Consensus       149 ~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~  191 (256)
T PRK12743        149 GASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMN  191 (256)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccc
Confidence            35689999999887654       3589999999999998753

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.84  E-value=5.1e-20  Score=153.89  Aligned_cols=158  Identities=18%  Similarity=0.164  Sum_probs=116.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----C-CCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----D-NPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++||||+|+||++++++|+++|++|++++|+....+.....    . ..++.++.+|++| .+++.+++..      
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS-EQSVLALSRGVDEIFG   80 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999987654332211    1 1468899999999 6666655432      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEcccee-eccCCCCCCCcchhc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILV-NGAAMGQILNPAYIF  200 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v-~~~~~~~~~~~~~~~  200 (252)
                      ++|+||||+|....        .+++..+++|+.++.++++++.    +.+ .+++|++||... ++.            
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------  148 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------  148 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC------------
Confidence            48999999986432        1234557899999887777763    344 369999998642 221            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       .....|+.+|++.+.+++       +.|+++++++||.+++..
T Consensus       149 -~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~  191 (259)
T PRK12384        149 -KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSP  191 (259)
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccch
Confidence             123568999998776543       468999999999876543

>PRK06484 short chain dehydrogenase; Validated

Probab=99.84  E-value=2.9e-20  Score=170.35  Aligned_cols=163  Identities=18%  Similarity=0.193  Sum_probs=125.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ...+|+++||||+|+||++++++|+++|++|++++|+.+..++.......++..+.+|++| .+++.+++..      ++
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITD-EAAVESAFAQIQARWGRL  344 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            3468999999999999999999999999999999998776654433233467788999999 6666655532      49


Q ss_pred             cEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          137 EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       137 d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      |+||||||....         .+++..+++|+.++.++++++...  +.++||++||...+..            ...+.
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~~  412 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLA------------LPPRN  412 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCC------------CCCCc
Confidence            999999997521         134566899999999999887542  3369999999854321            12346


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|++.+.+.+       +.|+++++|.||.+.++..
T Consensus       413 ~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~  452 (520)
T PRK06484        413 AYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAV  452 (520)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchh
Confidence            79999999987764       3589999999999998753

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.84  E-value=2.9e-20  Score=155.72  Aligned_cols=162  Identities=15%  Similarity=0.154  Sum_probs=115.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhc---ccc-CCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTT---LSK-DNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~---~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ++++|+++||||+++||++++++|+++|++|+++.|+ .+..+..   +.. ...++.++.+|++| .+++.+.+..   
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~   83 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE-PETYKELFKKIDE   83 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHH
Confidence            4578999999999999999999999999999887654 3333221   111 23468899999999 6666655542   


Q ss_pred             ---CCcEEEEcCCCCCC--------------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCC
Q 025456          135 ---DSEAVVCATGFQPG--------------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQI  193 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~--------------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~  193 (252)
                         ++|++|||||....              .++...+++|+.+...+.+.+    ++.+.++||++||......     
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----  158 (260)
T PRK08416         84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVY-----  158 (260)
T ss_pred             hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccC-----
Confidence               48999999985321              123345677887766655544    4445569999999743211     


Q ss_pred             CCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                             ...+..|+.+|++.+.+.+       ..|+++++|.||.+.++.
T Consensus       159 -------~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~  202 (260)
T PRK08416        159 -------IENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDA  202 (260)
T ss_pred             -------CCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChh
Confidence                   1124578899999987764       258999999999998875

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.84  E-value=5.5e-20  Score=152.47  Aligned_cols=161  Identities=20%  Similarity=0.219  Sum_probs=116.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++|+++||||+|+||++++++|+++|++|++..+ +.....+.+.   .....+..+.+|++| .+++.+++.+      
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   80 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGD-WDSTKAAFDKVKAEVG   80 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999887544 3333222221   123457788999999 6666655431      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||+|....        .+++..+++|+.++.++++++    ++.+.++||++||......            ..
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------------~~  148 (246)
T PRK12938         81 EIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKG------------QF  148 (246)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCC------------CC
Confidence            49999999997532        234566789999977766654    4566779999999743211            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..|..+|.+.+.+.+       ..|+++++++||.+.++..
T Consensus       149 ~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~  191 (246)
T PRK12938        149 GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMV  191 (246)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchh
Confidence            34678899998776553       3589999999999998753

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.83  E-value=6.2e-20  Score=154.85  Aligned_cols=162  Identities=14%  Similarity=0.177  Sum_probs=118.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-------h---hccccCCCCeEEEEeeCCCChHHHHHHHc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-------K---TTLSKDNPSLQIVKADVTEGSAKLSEAIG  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-------~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~  133 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+.+..       +   +.+.....++.++++|+++ .+++.+.+.
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~   82 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD-EDQVAAAVA   82 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHH
Confidence            4679999999999999999999999999999999976421       1   1111123468899999999 776666554


Q ss_pred             C------CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCC
Q 025456          134 D------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       134 ~------~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                      .      ++|+||||||....        .+++..+++|+.++.++++++..    .+-+++|++||.....        
T Consensus        83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~--------  154 (273)
T PRK08278         83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD--------  154 (273)
T ss_pred             HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc--------
Confidence            1      49999999996432        12345678999999999998842    3346899998863211        


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCc-ccCC
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGG-LRNE  236 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~-i~~~  236 (252)
                      +.+  ...+..|+.+|++.+.+++       ..+++++.|.||. +.++
T Consensus       155 ~~~--~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~  201 (273)
T PRK08278        155 PKW--FAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATA  201 (273)
T ss_pred             ccc--cCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccH
Confidence            000  0235689999999998765       2589999999994 5554

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1e-19  Score=152.52  Aligned_cols=161  Identities=16%  Similarity=0.186  Sum_probs=120.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHc-----CCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIG-----DDS  136 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~-----~~~  136 (252)
                      +++++++||||+|+||.+++++|+++|++|++++|+.+..++....  ...++.++.+|++| .+++.+.++     +++
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~i   81 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS-EAGREAVLARAREMGGI   81 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHhcCCC
Confidence            4579999999999999999999999999999999987665443221  23578899999999 666655543     238


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||.....        ++...+++|+.|+.++++.+.    +.+.+++|++||...+...            ...
T Consensus        82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~  149 (263)
T PRK09072         82 NVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGY------------PGY  149 (263)
T ss_pred             CEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCC------------CCc
Confidence            9999999875421        223456899999999988874    3445689999886432111            123


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|.+.+.+++       ..+++++++.||.+.++.
T Consensus       150 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~  189 (263)
T PRK09072        150 ASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAM  189 (263)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccc
Confidence            568899998776553       358999999999998765

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.83  E-value=5.7e-20  Score=153.94  Aligned_cols=162  Identities=20%  Similarity=0.156  Sum_probs=119.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh--ccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT--TLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+......  .+.....++.++.+|++| .+++.+++..      +
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~~   82 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRD-PASVAAAIKRAKEKEGR   82 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence            457999999999999999999999999999999998642211  111123467889999999 7666665542      4


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||+|.....        ++++.+++|+.++.++++++.    +.+.++||++||......           +...
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~-----------~~~~  151 (263)
T PRK08226         83 IDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMV-----------ADPG  151 (263)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccc-----------CCCC
Confidence            89999999964321        233457899999999888864    344568999998642100           0112


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +..|+.+|.+.+.+.+       +.+++++.++||.+.++.
T Consensus       152 ~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~  192 (263)
T PRK08226        152 ETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPM  192 (263)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHH
Confidence            4678999998887664       248999999999998875

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.83  E-value=7.6e-20  Score=151.38  Aligned_cols=161  Identities=22%  Similarity=0.290  Sum_probs=120.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hh---ccccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .++++++||||+|+||++++++|+++|++|+++.|+.... ..   .+.....++.++.+|++| .+++.+.+..     
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   81 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVAD-AAAVTRLFDAAETAF   81 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            3579999999999999999999999999998887764321 11   122234578899999999 7777666542     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                       ++|+||||+|....        .+++..+++|+.++.++++++.+.  ..++||++||...+..            ...
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~~  149 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALP------------LPG  149 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCC------------CCC
Confidence             39999999996432        124455789999999999888543  2358999998754321            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +..|+.+|.+.+.+++       ..++++++++||.+.++.
T Consensus       150 ~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~  190 (245)
T PRK12937        150 YGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATEL  190 (245)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCch
Confidence            4678999999987764       248999999999998875

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.83  E-value=8.3e-20  Score=151.09  Aligned_cols=160  Identities=21%  Similarity=0.224  Sum_probs=118.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      .++++||||+|+||++++++|+++|++|++++|+... .++.   ......++.++.+|++| .+++.+++..      +
T Consensus         2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~   80 (245)
T PRK12824          2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTD-TEECAEALAEIEEEEGP   80 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999998532 1111   11123468899999999 7766665532      4


Q ss_pred             CcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHH----HHhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEA----CRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~----~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||+|....        .+++..+++|+.++.+++++    +++.+.++||++||...+...            ..
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~------------~~  148 (245)
T PRK12824         81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQ------------FG  148 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCC------------CC
Confidence            9999999986532        12445578999998887554    465667799999998654322            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|..+|.+.+.+++       +.++++++++||.+.++..
T Consensus       149 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~  190 (245)
T PRK12824        149 QTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMV  190 (245)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcch
Confidence            3568899998776653       3589999999999988753

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.83  E-value=5.2e-20  Score=151.60  Aligned_cols=155  Identities=17%  Similarity=0.172  Sum_probs=117.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCCh-HHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS-AKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~-~~~~~~~~~~~d~vi~~  142 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+....      ...++.++.+|+++ . +++.+.+.. +|+||||
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~~~~~~~~~~D~~~-~~~~~~~~~~~-id~lv~~   74 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------LSGNFHFLQLDLSD-DLEPLFDWVPS-VDILCNT   74 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------cCCcEEEEECChHH-HHHHHHHhhCC-CCEEEEC
Confidence            4679999999999999999999999999999999875432      12468899999998 5 445555555 9999999


Q ss_pred             CCCCCC---------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          143 TGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       143 ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                      +|....         .++++.+++|+.++.++++++.    +.+.++||++||...+...            .....|+.
T Consensus        75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~Y~~  142 (235)
T PRK06550         75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAG------------GGGAAYTA  142 (235)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC------------CCCcccHH
Confidence            986321         1234567899999999988874    3445689999997543211            12356888


Q ss_pred             HHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          210 AKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       210 sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +|.+.+.+.+       ..|+++++++||.+.++..
T Consensus       143 sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~  178 (235)
T PRK06550        143 SKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMT  178 (235)
T ss_pred             HHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCccc
Confidence            9998776654       2589999999999988753

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.83  E-value=5.8e-20  Score=158.37  Aligned_cols=164  Identities=23%  Similarity=0.213  Sum_probs=120.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc---C--CCCeEEEEeeCCCC-h---HHHHHHHcC-
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D--NPSLQIVKADVTEG-S---AKLSEAIGD-  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~--~~~~~~i~~Dl~d~-~---~~~~~~~~~-  134 (252)
                      .+++++||||||+||++++++|+++|++|++++|++++.++...+   .  ..++..+.+|+++. .   +.+.+.+++ 
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            479999999999999999999999999999999998776543211   1  23577889999852 2   234444544 


Q ss_pred             CCcEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 ~~d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      ++|++|||||+...          .+++..+++|+.|+.++++++    ++.+.++||++||...+... .         
T Consensus       132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~-~---------  201 (320)
T PLN02780        132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP-S---------  201 (320)
T ss_pred             CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-C---------
Confidence            36699999997531          112346789999998888776    45566799999997543210 0         


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ......|+.+|++.+.+.+       ..|++++++.||.+.++..
T Consensus       202 ~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~  246 (320)
T PLN02780        202 DPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMA  246 (320)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcc
Confidence            0124789999999887654       3589999999999999864

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.83  E-value=8.9e-20  Score=151.30  Aligned_cols=161  Identities=22%  Similarity=0.213  Sum_probs=119.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++++++||||+|+||++++++|+++|++|+++.++ ++..+..   +.....++.++.+|++| .+++.+++..     
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSK-VEDANRLVEEAVNHF   82 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            457999999999999999999999999999876554 3333222   11123468899999999 6666665543     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||||....        .++++.+++|+.++.++++++..    .+.++||++||...+...            
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------  150 (247)
T PRK12935         83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGG------------  150 (247)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCC------------
Confidence             48999999987442        23445578999999999998853    345699999997543211            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+..|+.+|.+.+.+.+       ..++++++++||.+.++.
T Consensus       151 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~  193 (247)
T PRK12935        151 FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEM  193 (247)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChh
Confidence            124679999998876653       248999999999998764

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.83  E-value=6.9e-20  Score=153.34  Aligned_cols=163  Identities=15%  Similarity=0.169  Sum_probs=118.5

Q ss_pred             ccCCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCchhh---hhccccCCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           62 VSVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKA---KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        62 ~~~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      .++++|+++||||+  ++||++++++|+++|++|++.+|+.+..   ++... ......++++|++| .+++.++++.  
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~-~~~v~~~~~~~~   83 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAE-ELDAPIFLPLDVRE-PGQLEAVFARIA   83 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHH-hhccceEEecCcCC-HHHHHHHHHHHH
Confidence            45678999999998  5999999999999999999999875432   22111 11235678999999 6666554421  


Q ss_pred             ----CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCc
Q 025456          135 ----DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                          ++|++|||||....            .+++..+++|+.++.++++.+...  .-+++|++||.....         
T Consensus        84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~---------  154 (258)
T PRK07533         84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK---------  154 (258)
T ss_pred             HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc---------
Confidence                49999999996431            134566899999999988876321  125899999864321         


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         +...+..|+.+|++.+.+.+       ..|+++++|.||.+.++..
T Consensus       155 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~  200 (258)
T PRK07533        155 ---VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAA  200 (258)
T ss_pred             ---CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhh
Confidence               01235679999999887654       3689999999999988753

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.83  E-value=6.2e-20  Score=152.28  Aligned_cols=162  Identities=20%  Similarity=0.207  Sum_probs=122.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++++++||||+|+||++++++|+++|++|++++|++++.....   .....++.++.+|++| .+++.+++.      +
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   83 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD-PASVQRFFDAAAAALG   83 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            45799999999999999999999999999999999876554322   1123568999999999 777766553      1


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||+|.....        +++..+++|+.++.++++++.    +.+.++||++||...+...            .
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~  151 (250)
T PRK12939         84 GLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGA------------P  151 (250)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCC------------C
Confidence            399999999975421        233456799999999988874    3345699999997543211            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..|..+|.+.+.+++       ..++++++++||.+.++..
T Consensus       152 ~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~  194 (250)
T PRK12939        152 KLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEAT  194 (250)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccc
Confidence            24678999999887664       2589999999999988753

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.83  E-value=5.1e-20  Score=153.42  Aligned_cols=158  Identities=17%  Similarity=0.173  Sum_probs=117.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      +|+++||||+|+||++++++|+++|++|++++|+.+..+...   .....++.++++|++| .+++.+++..      ++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN-PEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCCc
Confidence            479999999999999999999999999999999876554322   1123578899999999 6666654431      38


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |+||||+|....        .+|+..+++|+.++.++++++.    +.+ .++||++||...+...            ..
T Consensus        80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~~  147 (252)
T PRK07677         80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG------------PG  147 (252)
T ss_pred             cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC------------CC
Confidence            999999985321        1245568999999999998883    222 3689999988533211            12


Q ss_pred             hhHHHHHHHHHHHHHH--------HcCCcEEEEeCCcccCC
Q 025456          204 FGLTLIAKLQAEQYIR--------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~--------~~gi~~~~lrPg~i~~~  236 (252)
                      ...|+.+|.+.+.+.+        ++|++++.|+||.+.+.
T Consensus       148 ~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~  188 (252)
T PRK07677        148 VIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERT  188 (252)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccc
Confidence            3468889988877654        25899999999999853

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.83  E-value=7.6e-20  Score=149.07  Aligned_cols=159  Identities=25%  Similarity=0.274  Sum_probs=135.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc--cCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      +.+|..+.|+|||||+|++++++|.+.|.+|++-.|..+.....++  ++..++-++..|+.| +++++++++. .++||
T Consensus        58 S~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~D-edSIr~vvk~-sNVVI  135 (391)
T KOG2865|consen   58 SVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRD-EDSIRAVVKH-SNVVI  135 (391)
T ss_pred             cccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCCC-HHHHHHHHHh-CcEEE
Confidence            4568999999999999999999999999999999997654332221  244678999999999 9999999998 99999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      |+.|...+.....+.++|+.+++.+.+.|++.|+.|||++|+.+..              ...-+.|..+|++.|..+++
T Consensus       136 NLIGrd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lgan--------------v~s~Sr~LrsK~~gE~aVrd  201 (391)
T KOG2865|consen  136 NLIGRDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGAN--------------VKSPSRMLRSKAAGEEAVRD  201 (391)
T ss_pred             EeeccccccCCcccccccchHHHHHHHHHHhhChhheeehhhcccc--------------ccChHHHHHhhhhhHHHHHh
Confidence            9999877777777889999999999999999999999999987421              12346678999999999998


Q ss_pred             cCCcEEEEeCCcccCCC
Q 025456          221 SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       221 ~gi~~~~lrPg~i~~~~  237 (252)
                      .-...+|+||..|+|..
T Consensus       202 afPeAtIirPa~iyG~e  218 (391)
T KOG2865|consen  202 AFPEATIIRPADIYGTE  218 (391)
T ss_pred             hCCcceeechhhhcccc
Confidence            88899999999998864

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.83  E-value=8.1e-20  Score=154.02  Aligned_cols=160  Identities=18%  Similarity=0.192  Sum_probs=116.2

Q ss_pred             CCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCchhh---hhccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKA---KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||++  +||++++++|+++|++|++.+|+....   ++..... ....++++|++| .+++.+++..    
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~-g~~~~~~~Dv~d-~~~v~~~~~~~~~~   82 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESL-GSDFVLPCDVED-IASVDAVFEALEKK   82 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhc-CCceEEeCCCCC-HHHHHHHHHHHHHH
Confidence            5689999999997  999999999999999999988875322   1111111 123578999999 6666655432    


Q ss_pred             --CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 --DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 --~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                        ++|++|||||....            .+|+..+++|+.++.++++++...  .-++||++||......          
T Consensus        83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~----------  152 (271)
T PRK06505         83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRV----------  152 (271)
T ss_pred             hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcccc----------
Confidence              49999999996431            234566789999998888776321  1268999998743211          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        ...+..|..+|++.+.+.+       .+|++++.|.||.+.++.
T Consensus       153 --~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~  196 (271)
T PRK06505        153 --MPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLA  196 (271)
T ss_pred             --CCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccc
Confidence              1224679999999887664       368999999999998875

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.2e-19  Score=151.86  Aligned_cols=161  Identities=17%  Similarity=0.289  Sum_probs=122.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCChHHHHHHHcC--CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD--DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d  137 (252)
                      +++++++||||+|+||+++++.|+++|++|++++|++++.+....    ....++.++.+|++| .+++.+++..  ++|
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~g~id   83 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSS-PEAREQLAAEAGDID   83 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHhCCCC
Confidence            468999999999999999999999999999999998776543221    123468899999999 7777766542  499


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      ++|||+|....        .++...+++|+.+..++++++    ++.+.+++|++||.....            +...+.
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~------------~~~~~~  151 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGEN------------PDADYI  151 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccC------------CCCCch
Confidence            99999997532        134456789999988887776    444446899999864311            112356


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .|..+|.+.+.+.+       ..|++++.|+||.+.++.
T Consensus       152 ~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~  190 (259)
T PRK06125        152 CGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDR  190 (259)
T ss_pred             HhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHH
Confidence            78899999877665       258999999999998873

>PRK05855 short chain dehydrogenase; Validated

Probab=99.83  E-value=6.9e-20  Score=169.44  Aligned_cols=164  Identities=18%  Similarity=0.157  Sum_probs=125.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      ..+.+++++||||+||||++++++|+++|++|++++|+.++.++..   .....++.++.+|++| .+++.+.++.    
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~  389 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSD-ADAMEAFAEWVRAE  389 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHh
Confidence            3456799999999999999999999999999999999876654322   1123468899999999 7666665542    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcC-CCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        ++|+||||||+...        .+++..+++|+.|+.++++++    ++.+ .++||++||...|...          
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----------  459 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS----------  459 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC----------
Confidence              48999999997542        134456789999999888875    3444 3699999998766432          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        .....|+.+|++.+.+.+       +.|+++++|.||.+.++..
T Consensus       460 --~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~  503 (582)
T PRK05855        460 --RSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIV  503 (582)
T ss_pred             --CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccch
Confidence              234679999998887654       3589999999999988753

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.83  E-value=9.2e-20  Score=153.05  Aligned_cols=159  Identities=21%  Similarity=0.245  Sum_probs=119.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .+++++++||||+|+||.+++++|+++|++|++++|+++...+..   .....++.++.+|++| .+++.+.+++     
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~   84 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD-YAAVEAAFAQIADEF   84 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            346899999999999999999999999999999999876654321   1123457889999999 7766665532     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||+|....        .++.+.+++|+.++.++++++..    .+ ++||++||...+..            .
T Consensus        85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~-g~iv~iss~~~~~~------------~  151 (264)
T PRK07576         85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPG-ASIIQISAPQAFVP------------M  151 (264)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CEEEEECChhhccC------------C
Confidence             38999999985331        12334577999999999888743    33 69999999754311            1


Q ss_pred             chhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccC
Q 025456          202 NVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRN  235 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~  235 (252)
                      ..+..|..+|.+.+.+.+.       .|++++.++||.+.+
T Consensus       152 ~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~  192 (264)
T PRK07576        152 PMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAG  192 (264)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccC
Confidence            2346789999999887652       589999999999864

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.83  E-value=2.2e-19  Score=148.66  Aligned_cols=160  Identities=24%  Similarity=0.240  Sum_probs=119.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      +++++++||||+|+||.+++++|+++|++|+++ .|+++......   .....++.++.+|++| .+++.+.+.      
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   81 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSS-EEDVENLVEQIVEKF   81 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999998 88776543322   1123468899999999 777666554      


Q ss_pred             -CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          134 -DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       + +|+|||++|.....        +++..+++|+.++.++++.+.    +.+.+++|++||...+...           
T Consensus        82 ~~-id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~-----------  149 (247)
T PRK05565         82 GK-IDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGA-----------  149 (247)
T ss_pred             CC-CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCC-----------
Confidence             4 99999999875321        234557899999888887774    4456789999997543221           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       .....|+.+|.+.+.+++       ..|+++++++||.+.++.
T Consensus       150 -~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~  192 (247)
T PRK05565        150 -SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEM  192 (247)
T ss_pred             -CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCcc
Confidence             123568888887766543       358999999999997764

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.83  E-value=8.2e-20  Score=150.66  Aligned_cols=156  Identities=18%  Similarity=0.135  Sum_probs=115.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~v  139 (252)
                      +|+++||||+|+||++++++|+++|++|++++|+++...+.+..  .++.++.+|++| .+++.+.+..      ++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQ--AGAQCIQADFST-NAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHH--cCCEEEEcCCCC-HHHHHHHHHHHHhhCCCccEE
Confidence            57999999999999999999999999999999987654332221  247889999999 6666554432      39999


Q ss_pred             EEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC--CCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       140 i~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      |||||....        .+++..+++|+.++..+.+.+.    +.+  .+++|++||......            ...+.
T Consensus        79 v~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~------------~~~~~  146 (236)
T PRK06483         79 IHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKG------------SDKHI  146 (236)
T ss_pred             EECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccC------------CCCCc
Confidence            999986422        1244567899999887766653    333  468999998743211            12246


Q ss_pred             HHHHHHHHHHHHHHH------cCCcEEEEeCCcccCC
Q 025456          206 LTLIAKLQAEQYIRK------SGINYTIIRPGGLRNE  236 (252)
Q Consensus       206 ~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~  236 (252)
                      .|+.+|++.+.+.+.      .++++++|+||.+.++
T Consensus       147 ~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~  183 (236)
T PRK06483        147 AYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFN  183 (236)
T ss_pred             cHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecC
Confidence            799999999987652      2699999999998664

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.7e-19  Score=150.78  Aligned_cols=160  Identities=16%  Similarity=0.118  Sum_probs=116.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++|+++||||+|+||++++++|+++|++|+++.++. +..+..   +.....++.++.+|++| .+++.+++.+      
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLAD-EAEVRALVARASAALG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999998877653 332221   11123568899999999 6666665532      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||....        .+++..+++|+.++.++++++..    .+.+++|+++|...+...            .
T Consensus        87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~------------p  154 (258)
T PRK09134         87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN------------P  154 (258)
T ss_pred             CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC------------C
Confidence            48999999986432        12345678999999999988753    234688888876433211            1


Q ss_pred             hhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~  237 (252)
                      .+..|+.+|.+++.+.+.      .++++++++||.+.+..
T Consensus       155 ~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~  195 (258)
T PRK09134        155 DFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSG  195 (258)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCc
Confidence            235799999988876652      24999999999987643

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.83  E-value=2.3e-19  Score=148.37  Aligned_cols=160  Identities=21%  Similarity=0.277  Sum_probs=117.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hh---ccccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++++++||||+|+||++++++|+++|++|+++.|+.... ..   .+.....++.++.+|++| .+++.+++..     
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   81 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD-AESVERAVDEAKAEF   81 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            4578999999999999999999999999998888876532 11   122234578889999999 7766665541     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cCCCEEEEEcccee-eccCCCCCCCcchhc
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILV-NGAAMGQILNPAYIF  200 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v-~~~~~~~~~~~~~~~  200 (252)
                       ++|+|||++|.....        +++..+++|+.++.++++++..    .+.++||++||... ++..           
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~-----------  150 (248)
T PRK05557         82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNP-----------  150 (248)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCC-----------
Confidence             389999999864421        1234467899999999888854    45578999999743 2211           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        ....|..+|.+.+.+++       ..++++++++||.+.++.
T Consensus       151 --~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~  192 (248)
T PRK05557        151 --GQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDM  192 (248)
T ss_pred             --CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcc
Confidence              23568889988876553       358999999999987664

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.83  E-value=1.6e-19  Score=151.15  Aligned_cols=163  Identities=16%  Similarity=0.154  Sum_probs=117.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .+++++++||||+|+||++++++|+++|++|+++.|+... ...   .+.....++.++.+|++| .+++.+.+..    
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~   82 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTV-ESDVVNLIQTAVKE   82 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCC-HHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999988885432 221   121123567889999999 6666655431    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHH----HHhcC-CCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEA----CRKRG-VNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~----~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        ++|++|||+|....        .+++..+++|+.++.++++.    +++.+ .+++|++||...+.            
T Consensus        83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~------------  150 (261)
T PRK08936         83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI------------  150 (261)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC------------
Confidence              48999999997432        12345578998887765544    45544 36899999974321            


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +...+..|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~  196 (261)
T PRK08936        151 PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPIN  196 (261)
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCcc
Confidence            11234678899988776553       3589999999999988863

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=4.5e-19  Score=148.07  Aligned_cols=161  Identities=17%  Similarity=0.168  Sum_probs=118.7

Q ss_pred             CCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCch-----------hh---hhccccCCCCeEEEEeeCCCChHH
Q 025456           64 VKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLD-----------KA---KTTLSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        64 ~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~-----------~~---~~~~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      +++++++||||+|  +||.+++++|+++|++|++++|++.           ..   ...+.....+++++.+|++| .++
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~   81 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQ-PYA   81 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCC-HHH
Confidence            4679999999995  8999999999999999999998721           11   11111123468899999999 666


Q ss_pred             HHHHHcC------CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccC
Q 025456          128 LSEAIGD------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAA  189 (252)
Q Consensus       128 ~~~~~~~------~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~  189 (252)
                      +.+++..      ++|+||||||.....        +++..+++|+.++.++++++..    .+.+++|++||...+...
T Consensus        82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~  161 (256)
T PRK12748         82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPM  161 (256)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCC
Confidence            6554431      489999999874321        2334578999999999988743    244699999997554321


Q ss_pred             CCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          190 MGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       190 ~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                                  .....|..+|++.+.+++       ..+++++.++||.+.++.
T Consensus       162 ------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~  204 (256)
T PRK12748        162 ------------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGW  204 (256)
T ss_pred             ------------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCC
Confidence                        124679999999998764       258999999999988764

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.7e-19  Score=169.54  Aligned_cols=164  Identities=21%  Similarity=0.275  Sum_probs=126.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .+++|+++||||+|+||++++++|+++|++|++++|+++..++...   ....++.++.+|++| .+++.+++..     
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~  446 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTD-SAAVDHTVKDILAEH  446 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999999876544321   123568899999999 7777666541     


Q ss_pred             -CCcEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 -DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 -~~d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                       ++|+||||||....          .+++..+++|+.|+.++++++    ++.+.++||++||..++...          
T Consensus       447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  516 (657)
T PRK07201        447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNA----------  516 (657)
T ss_pred             CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC----------
Confidence             49999999996421          123455789999988876665    55667899999998765432          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                        ..+..|+.+|++.+.+.+       ..|+++++|+||.+.++...
T Consensus       517 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~  561 (657)
T PRK07201        517 --PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIA  561 (657)
T ss_pred             --CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccC
Confidence              124679999999987764       35899999999999998654

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.82  E-value=1.3e-19  Score=151.72  Aligned_cols=160  Identities=17%  Similarity=0.189  Sum_probs=116.4

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCchh------hhhccccCCCCeEEEEeeCCCChHHHHHHHcC-
Q 025456           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDK------AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (252)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-  134 (252)
                      +++|+++||||+  ++||++++++|+++|++|++..|+.+.      .++... ....+.++++|++| .+++.++++. 
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d-~~~v~~~~~~~   81 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTE-PLNPSLFLPCDVQD-DAQIEETFETI   81 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHh-ccCcceEeecCcCC-HHHHHHHHHHH
Confidence            468999999986  899999999999999999887664321      111111 22346788999999 6666655432 


Q ss_pred             -----CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCC
Q 025456          135 -----DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       135 -----~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                           ++|++|||||+...            .+|+..+++|+.++.++++++...  .-++||++||.....        
T Consensus        82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~--------  153 (258)
T PRK07370         82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR--------  153 (258)
T ss_pred             HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc--------
Confidence                 49999999996421            234567899999998888876321  126899999974321        


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                          +...+..|+.+|++.+.+.+       ..|+++++|.||.+.++.
T Consensus       154 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~  198 (258)
T PRK07370        154 ----AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLA  198 (258)
T ss_pred             ----CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCch
Confidence                11234679999999987765       358999999999998874

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.82  E-value=1.5e-19  Score=151.23  Aligned_cols=159  Identities=18%  Similarity=0.218  Sum_probs=115.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHc------CCCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIG------DDSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d~  138 (252)
                      |+++||||+|+||++++++|+++|++|++++|+++..++....  ...++.++++|++| .+++.+++.      +++|+
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~~~~~~~~~~~~~g~id~   79 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSD-KDDLKNLVKEAWELLGGIDA   79 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC-HHHHHHHHHHHHHhcCCCCE
Confidence            4899999999999999999999999999999987665432211  12367889999999 776666553      14999


Q ss_pred             EEEcCCCCCC----------CCCCCcceehHHHHHHHHHH----HH-hcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          139 VVCATGFQPG----------WDLFAPWKVDNFGTVNLVEA----CR-KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       139 vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~----~~-~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      ||||||....          .++.+.+.+|+.++..+...    +. +.+.++||++||..+...            ...
T Consensus        80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~------------~~~  147 (259)
T PRK08340         80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEP------------MPP  147 (259)
T ss_pred             EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCC------------CCC
Confidence            9999996421          12223456787776655444    33 334579999999854321            112


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +..|..+|++.+.+.+       +.|++++.|.||.+.+++.
T Consensus       148 ~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~  189 (259)
T PRK08340        148 LVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGA  189 (259)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccH
Confidence            4678899998887765       2589999999999988753

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2.4e-19  Score=146.95  Aligned_cols=161  Identities=17%  Similarity=0.243  Sum_probs=119.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----CCcEEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----DSEAVVC  141 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----~~d~vi~  141 (252)
                      +++++||||+|+||++++++|+++|++|++++|+++..+...  ...++.++.+|++| .+++++++..    ++|+|||
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~id~vi~   77 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ--ALPGVHIEKLDMND-PASLDQLLQRLQGQRFDLLFV   77 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH--hccccceEEcCCCC-HHHHHHHHHHhhcCCCCEEEE
Confidence            478999999999999999999999999999999876554322  12367888999999 6666655542    4999999


Q ss_pred             cCCCCCC----------CCCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCcchhccchhhHHH
Q 025456          142 ATGFQPG----------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (252)
Q Consensus       142 ~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~  208 (252)
                      |+|....          .++...+.+|+.++.++++++...   +.++++++||....  ...       .+...+..|.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~--~~~-------~~~~~~~~Y~  148 (225)
T PRK08177         78 NAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGS--VEL-------PDGGEMPLYK  148 (225)
T ss_pred             cCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccc--ccc-------CCCCCccchH
Confidence            9987421          134456789999999998887532   33578888886321  100       0112345689


Q ss_pred             HHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          209 IAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       209 ~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+|.+.+.+++       ..+++++.++||.+.++..
T Consensus       149 ~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~~  185 (225)
T PRK08177        149 ASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDMG  185 (225)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCCC
Confidence            99999988765       2579999999999988864

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.82  E-value=5.8e-19  Score=147.34  Aligned_cols=159  Identities=22%  Similarity=0.225  Sum_probs=119.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-CCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      +++++||||+|+||++++++|+++|++|++++|+++..+..... ...+++++++|++| .+++.+.+.+      ++|+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d~   80 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTD-AASLAAALANAAAERGPVDV   80 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            57999999999999999999999999999999987765433221 22468899999999 7777665542      3899


Q ss_pred             EEEcCCCCCCCC--------CCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPGWD--------LFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~~~--------~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      |||++|......        +...+.+|+.++.++++++    ++.+.++||++||...+...             ....
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------~~~~  147 (257)
T PRK07074         81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL-------------GHPA  147 (257)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC-------------CCcc
Confidence            999998653211        2233568999998888887    34566789999996432110             1235


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |+.+|++.+.+++       .+|+++++++||.+.++..
T Consensus       148 y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~  186 (257)
T PRK07074        148 YSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAW  186 (257)
T ss_pred             cHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchh
Confidence            8889998887664       2489999999999988753

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.82  E-value=5.4e-19  Score=146.04  Aligned_cols=163  Identities=14%  Similarity=0.217  Sum_probs=117.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCC-hHHHHH-------H
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEG-SAKLSE-------A  131 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~-~~~~~~-------~  131 (252)
                      +++++++||||+|+||++++++|+++|++|++++|+++..+....    .....+.++.+|+++. .+++.+       .
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999876543221    1223567889999752 223332       2


Q ss_pred             HcCCCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          132 IGDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       132 ~~~~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                      +.+++|+||||||....         .++...+++|+.++.++++++.    +.+.+++|++||.....           
T Consensus        84 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~-----------  152 (239)
T PRK08703         84 TQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGET-----------  152 (239)
T ss_pred             hCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEecccccc-----------
Confidence            31248999999996421         1223457899999888888773    34457999999864211           


Q ss_pred             hccchhhHHHHHHHHHHHHHHH-------c-CCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIRK-------S-GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~-------~-gi~~~~lrPg~i~~~~~  238 (252)
                       +...+..|+.+|++.+.+.+.       . ++++++|+||++.++..
T Consensus       153 -~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~  199 (239)
T PRK08703        153 -PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQR  199 (239)
T ss_pred             -CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccc
Confidence             112346799999999877642       2 69999999999999864

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.8e-19  Score=153.08  Aligned_cols=160  Identities=16%  Similarity=0.118  Sum_probs=116.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc---------hhhhhc---cccCCCCeEEEEeeCCCChHHHHHH
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL---------DKAKTT---LSKDNPSLQIVKADVTEGSAKLSEA  131 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~---------~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~  131 (252)
                      +++++++||||+++||++++++|+++|++|++++|+.         +..+..   +.....++.++.+|++| .+++.+.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD-WDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC-HHHHHHH
Confidence            4589999999999999999999999999999988764         332221   11123467889999999 6666654


Q ss_pred             Hc------CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC------CCEEEEEccceeec
Q 025456          132 IG------DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG------VNRFILISSILVNG  187 (252)
Q Consensus       132 ~~------~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~------~~~~v~~SS~~v~~  187 (252)
                      ++      +++|++|||||+...        .+++..+++|+.+++++++++.    +..      .++||++||.....
T Consensus        83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~  162 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ  162 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence            43      249999999997532        2345668999999988887763    221      25899999975422


Q ss_pred             cCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..            ..+..|+.+|++.+.+.+       +.|++++.|.|| +.++.
T Consensus       163 ~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~  206 (286)
T PRK07791        163 GS------------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRM  206 (286)
T ss_pred             CC------------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCc
Confidence            11            124679999999887654       368999999999 65554

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2.3e-19  Score=146.74  Aligned_cols=160  Identities=20%  Similarity=0.210  Sum_probs=120.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHH---cC-CCcEEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI---GD-DSEAVVC  141 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~---~~-~~d~vi~  141 (252)
                      |++++||||+|+||++++++|+++|++|++++|+++..++...   .+++++.+|++| .+++.+++   .+ ++|+|||
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~---~~~~~~~~D~~~-~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA---LGAEALALDVAD-PASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh---ccceEEEecCCC-HHHHHHHHHHhcCCCCCEEEE
Confidence            4789999999999999999999999999999998766544322   346789999999 77777653   22 4899999


Q ss_pred             cCCCCCC----------CCCCCcceehHHHHHHHHHHHHh---cCCCEEEEEcccee-eccCCCCCCCcchhccchhhHH
Q 025456          142 ATGFQPG----------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILV-NGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       142 ~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v-~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ++|....          .+++..+++|+.++.++++++..   ...+++|++||... ++...          ......|
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~~~~~Y  146 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDAT----------GTTGWLY  146 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccccccc----------CCCcccc
Confidence            9987521          12456689999999999998854   22357999988643 33211          0111358


Q ss_pred             HHHHHHHHHHHHH-----cCCcEEEEeCCcccCCCCC
Q 025456          208 LIAKLQAEQYIRK-----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       208 ~~sK~~~e~~~~~-----~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..+|.+.+.+++.     .+++++.++||++.++...
T Consensus       147 ~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~  183 (222)
T PRK06953        147 RASKAALNDALRAASLQARHATCIALHPGWVRTDMGG  183 (222)
T ss_pred             HHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC
Confidence            9999999887753     3789999999999988643

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2e-19  Score=150.71  Aligned_cols=162  Identities=19%  Similarity=0.141  Sum_probs=120.5

Q ss_pred             CCCcEEEEEcCCC-hHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHc----
Q 025456           64 VKQKKIFVAGATG-SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIG----  133 (252)
Q Consensus        64 ~~~~~vlVtGatG-~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~----  133 (252)
                      +++++++||||+| +||+++++.|+++|++|++++|+.++.++...   .  ...++.++++|+++ .+++.+++.    
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~   93 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS-EAQVDALIDAAVE   93 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC-HHHHHHHHHHHHH
Confidence            4579999999997 89999999999999999999988765543221   1  12368889999999 666665553    


Q ss_pred             --CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcch
Q 025456          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                        +++|+||||+|....        .++...+++|+.++.++++++.    +.+ .+++|++||...+..          
T Consensus        94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~----------  163 (262)
T PRK07831         94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRA----------  163 (262)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC----------
Confidence              148999999996432        1344567899999988888763    333 468999988643211          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ......|+.+|++.+.+.+       .+|+++++|+||.+.++..
T Consensus       164 --~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~  208 (262)
T PRK07831        164 --QHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFL  208 (262)
T ss_pred             --CCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccc
Confidence              1234678999999988765       2589999999999998753

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.9e-19  Score=147.49  Aligned_cols=152  Identities=15%  Similarity=0.123  Sum_probs=116.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC---CCcEEEEcC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---~~d~vi~~a  143 (252)
                      |+++||||+|+||++++++|+++|++|++++|+.++.+.....  .+++++++|++| .+++.+++..   ++|++|||+
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~--~~~~~~~~D~~~-~~~v~~~~~~~~~~id~lv~~a   77 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE--LDVDAIVCDNTD-PASLEEARGLFPHHLDTIVNVP   77 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--ccCcEEecCCCC-HHHHHHHHHHHhhcCcEEEECC
Confidence            3699999999999999999999999999999987766543221  246788999999 7777766642   389999998


Q ss_pred             CCCC-------------CCCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHHH
Q 025456          144 GFQP-------------GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (252)
Q Consensus       144 g~~~-------------~~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~  208 (252)
                      |...             ..+++..+++|+.++.++++++...  ..++||++||..    .            .....|.
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~----~------------~~~~~Y~  141 (223)
T PRK05884         78 APSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN----P------------PAGSAEA  141 (223)
T ss_pred             CccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC----C------------CCccccH
Confidence            7421             1234566799999999999987431  226899999863    0            0135689


Q ss_pred             HHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          209 IAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       209 ~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .+|++.+.+.+       ..|++++.|.||.+.++.
T Consensus       142 asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~  177 (223)
T PRK05884        142 AIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPG  177 (223)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchh
Confidence            99998887654       368999999999998764

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2.6e-19  Score=153.39  Aligned_cols=165  Identities=17%  Similarity=0.104  Sum_probs=116.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch----------hhh---hccccCCCCeEEEEeeCCCChHHHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD----------KAK---TTLSKDNPSLQIVKADVTEGSAKLS  129 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~----------~~~---~~~~~~~~~~~~i~~Dl~d~~~~~~  129 (252)
                      ++++|+++||||+++||++++++|+++|++|++++|+..          ..+   +.+.....++.++++|++| .++++
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~   83 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLV-PEQVR   83 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCC-HHHHH
Confidence            356899999999999999999999999999999999742          221   1122123457789999999 66666


Q ss_pred             HHHcC------CCcEEEEcC-CCCC-----C-------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceee
Q 025456          130 EAIGD------DSEAVVCAT-GFQP-----G-------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVN  186 (252)
Q Consensus       130 ~~~~~------~~d~vi~~a-g~~~-----~-------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~  186 (252)
                      +++..      ++|++|||| |...     .       .++.+.+++|+.+++.+++++    ++.+-++||++||....
T Consensus        84 ~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~  163 (305)
T PRK08303         84 ALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAE  163 (305)
T ss_pred             HHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccc
Confidence            55431      499999999 7421     0       123345688999988877766    33434699999986431


Q ss_pred             ccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      -...         +......|..+|++...+.+       ..|+++++|.||.+.++.
T Consensus       164 ~~~~---------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~  212 (305)
T PRK08303        164 YNAT---------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEM  212 (305)
T ss_pred             ccCc---------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHH
Confidence            1000         01123569999999887764       358999999999998875

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.82  E-value=2.2e-19  Score=150.18  Aligned_cols=161  Identities=14%  Similarity=0.178  Sum_probs=116.4

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCc---hhhhhccccC-CCCeEEEEeeCCCChHHHHHHHc----
Q 025456           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDL---DKAKTTLSKD-NPSLQIVKADVTEGSAKLSEAIG----  133 (252)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~---~~~~~~~~~~-~~~~~~i~~Dl~d~~~~~~~~~~----  133 (252)
                      +++|+++||||+  ++||++++++|+++|++|++++|+.   +..++..... ..++.++++|++| .+++.++++    
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~   83 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS-DEEITACFETIKE   83 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHHHHH
Confidence            468999999997  8999999999999999999987753   2222222211 3467889999999 666665543    


Q ss_pred             --CCCcEEEEcCCCCCC----C--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcc
Q 025456          134 --DDSEAVVCATGFQPG----W--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~----~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                        +++|++|||||+...    .        ++...+++|+.+..++++++...  ..++||++||....-          
T Consensus        84 ~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~----------  153 (257)
T PRK08594         84 EVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER----------  153 (257)
T ss_pred             hCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc----------
Confidence              259999999986431    0        12345688999988877776431  126899999974321          


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        +...+..|+.+|++.+.+.+       ..|++++.|.||.+.++.
T Consensus       154 --~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~  198 (257)
T PRK08594        154 --VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLS  198 (257)
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHh
Confidence              11224679999999987764       358999999999998864

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.82  E-value=3.8e-19  Score=145.48  Aligned_cols=157  Identities=17%  Similarity=0.241  Sum_probs=116.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi~~  142 (252)
                      ++|+++||||+|+||+++++.|+++ ++|++++|+.+..++... ...+++++++|++| .+++.+++..  ++|+|||+
T Consensus         2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~-~~~~~~~~~~D~~~-~~~~~~~~~~~~~id~vi~~   78 (227)
T PRK08219          2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAA-ELPGATPFPVDLTD-PEAIAAAVEQLGRLDVLVHN   78 (227)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHH-HhccceEEecCCCC-HHHHHHHHHhcCCCCEEEEC
Confidence            3689999999999999999999999 999999998766543322 12358899999999 8888887763  49999999


Q ss_pred             CCCCCCC--------CCCCcceehHHHHHH----HHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHH
Q 025456          143 TGFQPGW--------DLFAPWKVDNFGTVN----LVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       143 ag~~~~~--------~~~~~~~~n~~g~~~----ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~s  210 (252)
                      +|.....        ++...+++|+.+..+    +++.+++.+ +++|++||...++..            .....|+.+
T Consensus        79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~v~~ss~~~~~~~------------~~~~~y~~~  145 (227)
T PRK08219         79 AGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH-GHVVFINSGAGLRAN------------PGWGSYAAS  145 (227)
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEcchHhcCcC------------CCCchHHHH
Confidence            9875422        123346788888544    444445544 689999998654322            124578899


Q ss_pred             HHHHHHHHHH-----cC-CcEEEEeCCcccCCC
Q 025456          211 KLQAEQYIRK-----SG-INYTIIRPGGLRNEP  237 (252)
Q Consensus       211 K~~~e~~~~~-----~g-i~~~~lrPg~i~~~~  237 (252)
                      |.+.+.+++.     .+ ++++.++||.+.++.
T Consensus       146 K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~  178 (227)
T PRK08219        146 KFALRALADALREEEPGNVRVTSVHPGRTDTDM  178 (227)
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEEecCCccchH
Confidence            9988876542     24 999999999887764

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2.4e-19  Score=148.69  Aligned_cols=160  Identities=19%  Similarity=0.225  Sum_probs=115.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++||||+|+||.+++++|+++|++|++..++ ++.....   +.....++.++.+|++| .+++.+++..      +
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVAD-EADVLRLFEAVDRELGR   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCC-HHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999998877644 3332221   22123467889999999 7766665541      4


Q ss_pred             CcEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHHHhc----C---CCEEEEEcccee-eccCCCCCCCcch
Q 025456          136 SEAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACRKR----G---VNRFILISSILV-NGAAMGQILNPAY  198 (252)
Q Consensus       136 ~d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~~~~----~---~~~~v~~SS~~v-~~~~~~~~~~~~~  198 (252)
                      +|+||||+|.....         ++...+++|+.++.++++++.+.    .   -+++|++||... ++..         
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------  151 (248)
T PRK06123         81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP---------  151 (248)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC---------
Confidence            89999999875321         23355889999999988887432    1   247999999754 2211         


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         ..+..|+.+|++.+.+++       +.|+++++++||+++|+..
T Consensus       152 ---~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~  195 (248)
T PRK06123        152 ---GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIH  195 (248)
T ss_pred             ---CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchh
Confidence               112359999999987654       2489999999999999853

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.82  E-value=3.6e-19  Score=151.03  Aligned_cols=158  Identities=18%  Similarity=0.104  Sum_probs=108.8

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCCCC
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG  148 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~  148 (252)
                      |+||||+||||++++++|+++|++|++++|++........     ..  ..|+..  ..+.+.+.+ +|+|||+||....
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-----~~--~~~~~~--~~~~~~~~~-~D~Vvh~a~~~~~   70 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW-----EG--YKPWAP--LAESEALEG-ADAVINLAGEPIA   70 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc-----ee--eecccc--cchhhhcCC-CCEEEECCCCCcc
Confidence            6899999999999999999999999999998765432110     11  112222  334556677 9999999986432


Q ss_pred             -CCC-----CCcceehHHHHHHHHHHHHhcCCC--EEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHH--
Q 025456          149 -WDL-----FAPWKVDNFGTVNLVEACRKRGVN--RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI--  218 (252)
Q Consensus       149 -~~~-----~~~~~~n~~g~~~ll~~~~~~~~~--~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~--  218 (252)
                       .++     ...+++|+.++.+++++|++.+++  +||++|+..+|+...+.+..+... ..+...|...+...|+.+  
T Consensus        71 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~-~~~~~~~~~~~~~~e~~~~~  149 (292)
T TIGR01777        71 DKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDS-PAGDDFLAELCRDWEEAAQA  149 (292)
T ss_pred             cccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccC-CCCCChHHHHHHHHHHHhhh
Confidence             112     345688999999999999999863  566677777888654444444331 122233444444445443  


Q ss_pred             -HHcCCcEEEEeCCcccCCC
Q 025456          219 -RKSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       219 -~~~gi~~~~lrPg~i~~~~  237 (252)
                       ++.+++++++||+.++|+.
T Consensus       150 ~~~~~~~~~ilR~~~v~G~~  169 (292)
T TIGR01777       150 AEDLGTRVVLLRTGIVLGPK  169 (292)
T ss_pred             chhcCCceEEEeeeeEECCC
Confidence             3468999999999999985

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.81  E-value=1.8e-19  Score=149.83  Aligned_cols=159  Identities=16%  Similarity=0.194  Sum_probs=115.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--------CC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--------DS  136 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--------~~  136 (252)
                      ||+++||||+|+||++++++|+++|++|++++|++ +...........+++++.+|++| .+++.+.++.        ..
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~~~   79 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQD-VHELETNFNEILSSIQEDNV   79 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCC-HHHHHHHHHHHHHhcCcccC
Confidence            47999999999999999999999999999999987 33333222234578899999999 7777665542        01


Q ss_pred             --cEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----Hhc-CCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          137 --EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKR-GVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       137 --d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~-~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        +++|||+|....         .++...+++|+.++.++++.+    ++. +.++||++||..++.            +
T Consensus        80 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~  147 (251)
T PRK06924         80 SSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN------------P  147 (251)
T ss_pred             CceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC------------C
Confidence              278999986431         123355788998876666555    333 346899999975421            1


Q ss_pred             cchhhHHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      ......|+.+|++.+.+.+         ..+++++.|+||.+.++.
T Consensus       148 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~  193 (251)
T PRK06924        148 YFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNM  193 (251)
T ss_pred             CCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHh
Confidence            2345789999999988764         247999999999998764

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.81  E-value=3.7e-19  Score=147.34  Aligned_cols=161  Identities=16%  Similarity=0.179  Sum_probs=115.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      |++++||||+|+||++++++|+++|++|+++ .|+++...+..   .....++.++++|++| .+++.+++..      +
T Consensus         1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~~~~~~~   79 (247)
T PRK09730          1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISD-ENQVVAMFTAIDQHDEP   79 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCC-HHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999999874 46554433221   1123468889999999 7767665542      4


Q ss_pred             CcEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHHHhc-------CCCEEEEEccceeeccCCCCCCCcchh
Q 025456          136 SEAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACRKR-------GVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       136 ~d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~~~~-------~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                      +|+||||+|.....         ++...+++|+.++.++++++...       ..++||++||...+....         
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~---------  150 (247)
T PRK09730         80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAP---------  150 (247)
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCC---------
Confidence            89999999964321         12356789999998887776321       135799999975432111         


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ..+..|+.+|.+.+.+++       +.++++++++||.++++..
T Consensus       151 --~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~  194 (247)
T PRK09730        151 --GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMH  194 (247)
T ss_pred             --CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCccc
Confidence              112358899998887654       3589999999999999853

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=2.9e-19  Score=149.31  Aligned_cols=161  Identities=19%  Similarity=0.164  Sum_probs=116.0

Q ss_pred             CCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCc-----------hhhh---hccccCCCCeEEEEeeCCCChHH
Q 025456           64 VKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDL-----------DKAK---TTLSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        64 ~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~-----------~~~~---~~~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      +++|+++||||+|  +||.+++++|+++|++|+++.|..           +...   +.+.....++.++++|++| .++
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~   82 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQ-NDA   82 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHH
Confidence            5689999999995  899999999999999998875321           1111   1111123568889999999 666


Q ss_pred             HHHHHcC------CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccC
Q 025456          128 LSEAIGD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAA  189 (252)
Q Consensus       128 ~~~~~~~------~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~  189 (252)
                      +.+++..      ++|+||||||....        .+++..+++|+.++..+.+++    ++.+.++||++||.....  
T Consensus        83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--  160 (256)
T PRK12859         83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG--  160 (256)
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC--
Confidence            6655532      48999999986432        124455789999988775444    444456999999975321  


Q ss_pred             CCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          190 MGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       190 ~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                                +...+..|+.+|++.+.+.+       .+|++++.|+||.+.++.
T Consensus       161 ----------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~  205 (256)
T PRK12859        161 ----------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGW  205 (256)
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCC
Confidence                      11235789999999987654       368999999999998864

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.81  E-value=2.3e-19  Score=151.32  Aligned_cols=160  Identities=14%  Similarity=0.169  Sum_probs=117.0

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCch---hhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+  ++||++++++|+++|++|++..|+..   ..++... .......+++|++| .+++++++..    
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~-~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~   85 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAA-ELGAFVAGHCDVTD-EASIDAVFETLEKK   85 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHH-hcCCceEEecCCCC-HHHHHHHHHHHHHh
Confidence            467999999997  89999999999999999998887632   2222211 11235678999999 6666655432    


Q ss_pred             --CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 --DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 --~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                        ++|++|||||+...            .+++..+++|+.++.++++.+...  +-+++|++||.....           
T Consensus        86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~-----------  154 (272)
T PRK08159         86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK-----------  154 (272)
T ss_pred             cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc-----------
Confidence              49999999996431            135566899999999999887532  226899999864321           


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       +...+..|+.+|++.+.+.+       ..|+++++|.||.+.++.
T Consensus       155 -~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~  199 (272)
T PRK08159        155 -VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLA  199 (272)
T ss_pred             -CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHH
Confidence             11234679999999887664       358999999999998864

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.81  E-value=2.6e-19  Score=148.68  Aligned_cols=161  Identities=19%  Similarity=0.243  Sum_probs=117.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c-CCCCeEEEEeeCCC-ChHHHHH-------H
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K-DNPSLQIVKADVTE-GSAKLSE-------A  131 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~-~~~~~~~i~~Dl~d-~~~~~~~-------~  131 (252)
                      +++++++||||+|+||.+++++|+++|++|++++|+.+..+....   . ...++.++.+|+++ ..+++.+       .
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ   89 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999765443221   1 22467788888863 1333333       3


Q ss_pred             HcCCCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          132 IGDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       132 ~~~~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                      +.. +|+||||||....         .+++..+++|+.++.++++++    ++.+.++||++||......          
T Consensus        90 ~~~-id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~----------  158 (247)
T PRK08945         90 FGR-LDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQG----------  158 (247)
T ss_pred             hCC-CCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCC----------
Confidence            334 9999999986421         123456789999988888876    4566789999999753211          


Q ss_pred             hccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                        ...+..|+.+|.+++.+++.       .++++++++||.+.++.
T Consensus       159 --~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~  202 (247)
T PRK08945        159 --RANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAM  202 (247)
T ss_pred             --CCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcc
Confidence              11235689999998877642       47999999999997764

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.81  E-value=3.4e-19  Score=149.53  Aligned_cols=160  Identities=19%  Similarity=0.307  Sum_probs=115.8

Q ss_pred             CCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCch---hhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||++  +||++++++|+++|++|++.+|+..   ..++... ....+.++.+|++| .+++++++..    
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~   81 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAA-QLGSDIVLPCDVAE-DASIDAMFAELGKV   81 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHh-ccCCceEeecCCCC-HHHHHHHHHHHHhh
Confidence            4689999999985  9999999999999999998888731   1122111 22346788999999 7777665532    


Q ss_pred             --CCcEEEEcCCCCCCC-------------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 --DSEAVVCATGFQPGW-------------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~-------------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                        ++|++|||||+....             +++..+++|+.+...+.+++...  +-++||++||.+...          
T Consensus        82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~----------  151 (262)
T PRK07984         82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------  151 (262)
T ss_pred             cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC----------
Confidence              499999999964321             22345688999988888876321  226899999874321          


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        +...+..|+.+|.+.+.+.+       ..|+++++|.||.+.++.
T Consensus       152 --~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~  196 (262)
T PRK07984        152 --AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLA  196 (262)
T ss_pred             --CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchH
Confidence              11124679999999987765       358999999999998864

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.81  E-value=3.8e-19  Score=150.21  Aligned_cols=170  Identities=18%  Similarity=0.156  Sum_probs=119.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-----CCCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----DDSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-----~~~d  137 (252)
                      +|+++|||| |+||++++++|+ +|++|++++|+.++.++..   .....++.++++|++| .+++.+++.     +++|
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS-RESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHhcCCCC
Confidence            578999998 799999999996 8999999999876554322   1123468889999999 666665553     2499


Q ss_pred             EEEEcCCCCC-CCCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCC-C----CC--C-Ccc----hh---
Q 025456          138 AVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAM-G----QI--L-NPA----YI---  199 (252)
Q Consensus       138 ~vi~~ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~-~----~~--~-~~~----~~---  199 (252)
                      +||||||+.. ..+++..+++|+.++.++++++...  .-+++|++||........ .    ..  . ...    ..   
T Consensus        79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
T PRK06940         79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLPFLQ  158 (275)
T ss_pred             EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccccccc
Confidence            9999999754 3467788999999999999988532  114677787765432110 0    00  0 000    00   


Q ss_pred             c---cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 F---LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~---~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +   ...+..|..+|++.+.+.+       +.|+++++|.||.+.++..
T Consensus       159 ~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~  207 (275)
T PRK06940        159 PDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLA  207 (275)
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccc
Confidence            0   0235679999999887654       3589999999999998853

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.81  E-value=1.6e-19  Score=139.54  Aligned_cols=162  Identities=19%  Similarity=0.193  Sum_probs=120.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ..+.+.++||||+++||++|+..|++.|++|.+.+++....++....  ...+...+.+|+++ +++++..+++      
T Consensus        11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~-a~~v~~~l~e~~k~~g   89 (256)
T KOG1200|consen   11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSK-AHDVQNTLEEMEKSLG   89 (256)
T ss_pred             HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCc-HHHHHHHHHHHHHhcC
Confidence            34579999999999999999999999999999999887665543322  22356678999999 6655554432      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc------CCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR------GVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~------~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      .+++++||||+..+        .+|++.+.+|+.|++.+.+++.+.      +..+||++||+-..-...+         
T Consensus        90 ~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~G---------  160 (256)
T KOG1200|consen   90 TPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFG---------  160 (256)
T ss_pred             CCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccccc---------
Confidence            49999999998763        478899999999999998887432      1238999999843211112         


Q ss_pred             cchhhHHHHHH--------HHHHHHHHHcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAK--------LQAEQYIRKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK--------~~~e~~~~~~gi~~~~lrPg~i~~~~~  238 (252)
                         ..+|+++|        .++.++.+ .+|+++.+-||+|.+|+.
T Consensus       161 ---QtnYAAsK~GvIgftktaArEla~-knIrvN~VlPGFI~tpMT  202 (256)
T KOG1200|consen  161 ---QTNYAASKGGVIGFTKTAARELAR-KNIRVNVVLPGFIATPMT  202 (256)
T ss_pred             ---chhhhhhcCceeeeeHHHHHHHhh-cCceEeEeccccccChhh
Confidence               24455544        45555444 589999999999999874

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.81  E-value=2.8e-19  Score=146.77  Aligned_cols=155  Identities=16%  Similarity=0.201  Sum_probs=121.0

Q ss_pred             EEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC--CCcEEEEcCCC
Q 025456           70 FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVCATGF  145 (252)
Q Consensus        70 lVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi~~ag~  145 (252)
                      +||||+|+||++++++|+++|++|++++|+++..+.....  ...+++++.+|++| .+++.+++..  ++|++||++|.
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~id~li~~ag~   79 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITD-EAAVDAFFAEAGPFDHVVITAAD   79 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHhcCCCCEEEECCCC
Confidence            5999999999999999999999999999987665432211  13568899999999 7888877754  48999999986


Q ss_pred             CCC--------CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHH
Q 025456          146 QPG--------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (252)
Q Consensus       146 ~~~--------~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (252)
                      ...        .+++..+++|+.++.+++++.+..+.++||++||...+...            .+...|+.+|++.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~------------~~~~~Y~~sK~a~~~~  147 (230)
T PRK07041         80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPS------------ASGVLQGAINAALEAL  147 (230)
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCC------------CcchHHHHHHHHHHHH
Confidence            432        12445678999999999996665566799999998665321            2346799999999887


Q ss_pred             HHH-----cCCcEEEEeCCcccCCC
Q 025456          218 IRK-----SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       218 ~~~-----~gi~~~~lrPg~i~~~~  237 (252)
                      .+.     .++++++++||.+.++.
T Consensus       148 ~~~la~e~~~irv~~i~pg~~~t~~  172 (230)
T PRK07041        148 ARGLALELAPVRVNTVSPGLVDTPL  172 (230)
T ss_pred             HHHHHHHhhCceEEEEeecccccHH
Confidence            753     36899999999987764

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.81  E-value=2.3e-19  Score=149.94  Aligned_cols=159  Identities=18%  Similarity=0.237  Sum_probs=114.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch----hhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD----KAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~----~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      +++++++||||+|+||.++++.|+++|++|+++.++..    ..++.   +.....++.++++|++| .+++.+++..  
T Consensus         6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~   84 (257)
T PRK12744          6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTT-AAAVEKLFDDAK   84 (257)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCC-HHHHHHHHHHHH
Confidence            45799999999999999999999999999777765432    11111   11123468889999999 7777665542  


Q ss_pred             ----CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEE-ccc-eeeccCCCCCCCcch
Q 025456          135 ----DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILI-SSI-LVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~-SS~-~v~~~~~~~~~~~~~  198 (252)
                          ++|+||||||....        .+++..+++|+.++..+++++...  ..++++++ ||. +.+.           
T Consensus        85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~-----------  153 (257)
T PRK12744         85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT-----------  153 (257)
T ss_pred             HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC-----------
Confidence                49999999996321        134456789999999999988542  12467665 443 2111           


Q ss_pred             hccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                         ..+..|+.+|++.|.+.+.       .|+++++++||.+.++.
T Consensus       154 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~  196 (257)
T PRK12744        154 ---PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPF  196 (257)
T ss_pred             ---CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccch
Confidence               1246789999999987652       47999999999998864

>PRK08017 oxidoreductase; Provisional

Probab=99.81  E-value=5.8e-19  Score=147.13  Aligned_cols=156  Identities=22%  Similarity=0.299  Sum_probs=116.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-------CCCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~~~d~  138 (252)
                      +++++||||+|+||.++++.|+++|++|++++|+.++.+....   .+++.+.+|++| .+++.+.+.       +++|.
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~~~~~   77 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS---LGFTGILLDLDD-PESVERAADEVIALTDNRLYG   77 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh---CCCeEEEeecCC-HHHHHHHHHHHHHhcCCCCeE
Confidence            3689999999999999999999999999999998876544322   357889999999 665544332       23899


Q ss_pred             EEEcCCCCCCC--------CCCCcceehHHHHHHH----HHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPGW--------DLFAPWKVDNFGTVNL----VEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~~--------~~~~~~~~n~~g~~~l----l~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      +||++|.....        +++..+++|+.|+.++    ++.+++.+.+++|++||...+..            ......
T Consensus        78 ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~~~~~  145 (256)
T PRK08017         78 LFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLIS------------TPGRGA  145 (256)
T ss_pred             EEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccC------------CCCccH
Confidence            99999864321        2335678999887775    56667777789999999743211            122467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      |+.+|.+.|.+.+       ..++++++++||.+.++.
T Consensus       146 Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~  183 (256)
T PRK08017        146 YAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRF  183 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccch
Confidence            9999999987643       468999999999887753

>PRK06484 short chain dehydrogenase; Validated

Probab=99.81  E-value=2.9e-19  Score=163.71  Aligned_cols=161  Identities=17%  Similarity=0.217  Sum_probs=122.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      ++|+++||||+++||.+++++|+++|++|++++|+.+..++.......++.++++|++| .+++.+++..      ++|+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSD-EAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCC-HHHHHHHHHHHHHHhCCCCE
Confidence            57999999999999999999999999999999998877655443233567889999999 6666555432      4999


Q ss_pred             EEEcCCCCC----------CCCCCCcceehHHHHHHHHHHHH----hcCCC-EEEEEccceeeccCCCCCCCcchhccch
Q 025456          139 VVCATGFQP----------GWDLFAPWKVDNFGTVNLVEACR----KRGVN-RFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       139 vi~~ag~~~----------~~~~~~~~~~n~~g~~~ll~~~~----~~~~~-~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      ||||||+..          ..+++..+++|+.++.++++++.    +.+.+ +||++||.......            ..
T Consensus        83 li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~------------~~  150 (520)
T PRK06484         83 LVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL------------PK  150 (520)
T ss_pred             EEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC------------CC
Confidence            999998731          12345668999999999888874    33333 89999997543211            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|..+|++.+.+.+       ..+++++.|.||.+.++..
T Consensus       151 ~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~  192 (520)
T PRK06484        151 RTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMV  192 (520)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhh
Confidence            4679999999987654       3589999999999988753

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.81  E-value=6.5e-19  Score=151.56  Aligned_cols=173  Identities=18%  Similarity=0.211  Sum_probs=119.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      ++++++||||+++||.+++++|+++| ++|++++|+.++.++...   .....+.++.+|++| .+++.+++.      +
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~   80 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGS-LDSVRQFVQQFRESGR   80 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999 999999998766543221   123467889999999 666655442      1


Q ss_pred             CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcC--CCEEEEEccceeeccCCC----CCCC
Q 025456          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRG--VNRFILISSILVNGAAMG----QILN  195 (252)
Q Consensus       135 ~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~--~~~~v~~SS~~v~~~~~~----~~~~  195 (252)
                      ++|++|||||+...         .+++..+++|+.++.++++.+    ++.+  .++||++||...+.....    .+.+
T Consensus        81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~  160 (314)
T TIGR01289        81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKAN  160 (314)
T ss_pred             CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCccc
Confidence            49999999996421         123455789999988886665    3442  369999999876532110    0000


Q ss_pred             -----------------cchhccchhhHHHHHHHHHHHHH----HH----cCCcEEEEeCCcc-cCCCC
Q 025456          196 -----------------PAYIFLNVFGLTLIAKLQAEQYI----RK----SGINYTIIRPGGL-RNEPP  238 (252)
Q Consensus       196 -----------------~~~~~~~~~~~y~~sK~~~e~~~----~~----~gi~~~~lrPg~i-~~~~~  238 (252)
                                       ....+..++..|..||++...+.    ++    .|+++++++||.+ .++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~  229 (314)
T TIGR01289       161 LGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLF  229 (314)
T ss_pred             ccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCccc
Confidence                             00012345677999999865433    22    4799999999998 46553

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=4e-19  Score=152.38  Aligned_cols=161  Identities=18%  Similarity=0.103  Sum_probs=117.1

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch-hhhh---ccccCCCCeEEEEeeCCCChHHHHHHHc----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIG----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~----  133 (252)
                      .++++++++||||+|+||++++++|+++|++|++.++... ..++   .+.....++.++.+|++| .+++.++++    
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d-~~~~~~~~~~~~~   86 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQ-RATADELVATAVG   86 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999887532 2222   122124568899999999 666655443    


Q ss_pred             -CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----c-------CCCEEEEEccceeeccCCCCC
Q 025456          134 -DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----R-------GVNRFILISSILVNGAAMGQI  193 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~-------~~~~~v~~SS~~v~~~~~~~~  193 (252)
                       +++|+||||||....        .+++..+++|+.++.++++++..    .       ..++||++||...+...    
T Consensus        87 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----  162 (306)
T PRK07792         87 LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP----  162 (306)
T ss_pred             hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC----
Confidence             249999999997542        23455678999999999887631    1       12589999997543211    


Q ss_pred             CCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                              .....|+.+|++.+.+.+       ++|+++++|.||. .++
T Consensus       163 --------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~  203 (306)
T PRK07792        163 --------VGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTA  203 (306)
T ss_pred             --------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCc
Confidence                    123579999999887654       3689999999984 444

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=7.2e-19  Score=146.06  Aligned_cols=161  Identities=18%  Similarity=0.178  Sum_probs=118.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+|+||+++++.|+++|++|++++|+.++.+...   .....++.++++|++| .+++.+.+..      
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD-EEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            45799999999999999999999999999999999876554322   1124568889999999 6665544432      


Q ss_pred             CCcEEEEcCCCCCCC-----------------CCCCcceehHHHHHHHHHHH----Hhc-CCCEEEEEccceeeccCCCC
Q 025456          135 DSEAVVCATGFQPGW-----------------DLFAPWKVDNFGTVNLVEAC----RKR-GVNRFILISSILVNGAAMGQ  192 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~-----------------~~~~~~~~n~~g~~~ll~~~----~~~-~~~~~v~~SS~~v~~~~~~~  192 (252)
                      ++|+||||+|.....                 ++...+++|+.++.++++.+    .+. .-+++|++||...++..   
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~---  158 (253)
T PRK08217         82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM---  158 (253)
T ss_pred             CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC---
Confidence            389999999863311                 12234678999998777654    232 23579999997655321   


Q ss_pred             CCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                                ....|..+|++.+.+++       +.+++++.++||.+.++..
T Consensus       159 ----------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~  201 (253)
T PRK08217        159 ----------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMT  201 (253)
T ss_pred             ----------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccc
Confidence                      24678999998887654       3589999999999988753

>PRK07069 short chain dehydrogenase; Validated

Probab=99.81  E-value=4.9e-19  Score=147.07  Aligned_cols=158  Identities=15%  Similarity=0.133  Sum_probs=114.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhccc---cC--CCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTLS---KD--NPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~~~---~~--~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++||||+|+||.++++.|+++|++|++++|+ .+..++...   ..  ...+.++++|++| .+++.+++..      +
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   79 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTD-EAQWQALLAQAADAMGG   79 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence            48999999999999999999999999999998 444332211   11  1234568899999 6666555431      3


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHH----HHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNF----GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~----g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||+|.....        ++...+++|+.    ++..+++.+++.+.++||++||...+...            ..
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~------------~~  147 (251)
T PRK07069         80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAE------------PD  147 (251)
T ss_pred             ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCC------------CC
Confidence            89999999875421        23345678888    56677777777777899999998655322            12


Q ss_pred             hhHHHHHHHHHHHHHHH---------cCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIRK---------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~~---------~gi~~~~lrPg~i~~~~~  238 (252)
                      +..|+.+|.+.+.+.+.         .+++++.++||.+.++..
T Consensus       148 ~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~  191 (251)
T PRK07069        148 YTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIV  191 (251)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcch
Confidence            35688999988876542         258999999999998864

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=6.7e-19  Score=146.33  Aligned_cols=161  Identities=16%  Similarity=0.099  Sum_probs=117.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch-hhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++++++||||+||||++++++|+++|++|++..|+.. .....   ......++.++.+|+++ .+++.+.++.     
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST-REGCETLAKATIDRY   82 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC-HHHHHHHHHHHHHHc
Confidence            45799999999999999999999999999988776432 22211   11123457788999999 6655555431     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                       ++|+||||||.....        +++..+++|+.++.++++++.+.  ..++||++||...+..            ..+
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~  150 (252)
T PRK06077         83 GVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRP------------AYG  150 (252)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCC------------CCC
Confidence             389999999963321        12355789999999988888643  2358999999865532            234


Q ss_pred             hhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|++.+.+++.      .++++++++||.+.++.
T Consensus       151 ~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~  190 (252)
T PRK06077        151 LSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKL  190 (252)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChH
Confidence            57899999999877652      37999999999998875

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.81  E-value=4e-19  Score=148.98  Aligned_cols=159  Identities=19%  Similarity=0.280  Sum_probs=113.7

Q ss_pred             CCCcEEEEEcC--CChHHHHHHHHHHHCCCeEEEeecCch---hhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGa--tG~iG~~l~~~L~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||  +++||++++++|+++|++|++..|...   ..++... .......+++|++| .+++.+++..    
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~   81 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAA-ELDSELVFRCDVAS-DDEINQVFADLGKH   81 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHh-ccCCceEEECCCCC-HHHHHHHHHHHHHH
Confidence            46899999997  679999999999999999998776532   1222211 11235678999999 7666655532    


Q ss_pred             --CCcEEEEcCCCCCCC-------------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCC
Q 025456          135 --DSEAVVCATGFQPGW-------------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~-------------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                        ++|++|||||+....             +++..+++|+.++.++.+.+.    +.+ ++||++||......       
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~-g~Iv~iss~~~~~~-------  153 (261)
T PRK08690         82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRN-SAIVALSYLGAVRA-------  153 (261)
T ss_pred             hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcC-cEEEEEcccccccC-------
Confidence              499999999975321             123346789999888777652    333 68999998753211       


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                           ...+..|..+|++.+.+.+       ++|+++++|.||.+.++.
T Consensus       154 -----~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~  197 (261)
T PRK08690        154 -----IPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLA  197 (261)
T ss_pred             -----CCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchh
Confidence                 1224678999999887654       468999999999998875

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.81  E-value=3.7e-19  Score=149.12  Aligned_cols=161  Identities=12%  Similarity=0.148  Sum_probs=115.4

Q ss_pred             cCCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCchh---hhhccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDK---AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .+++|+++||||++  +||++++++|+++|++|++.+|+...   .+++.. ......++++|++| .++++++++.   
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~-~~g~~~~~~~Dv~~-~~~v~~~~~~~~~   82 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAE-EIGCNFVSELDVTN-PKSISNLFDDIKE   82 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHH-hcCCceEEEccCCC-HHHHHHHHHHHHH
Confidence            35689999999997  89999999999999999988887321   112211 11223467899999 6666655532   


Q ss_pred             ---CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 ---DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                         ++|++|||+|....            .+|+..+++|+.++..+++.+...  .-++||++||......         
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~---------  153 (260)
T PRK06603         83 KWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKV---------  153 (260)
T ss_pred             HcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccC---------
Confidence               49999999986421            134456789999999988876321  1268999999743210         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                         ...+..|+.+|++.+.+.+       ..|+++++|.||.+.++.
T Consensus       154 ---~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~  197 (260)
T PRK06603        154 ---IPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLA  197 (260)
T ss_pred             ---CCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchh
Confidence               1124678999999887654       368999999999998874

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.81  E-value=4.8e-19  Score=148.11  Aligned_cols=160  Identities=18%  Similarity=0.199  Sum_probs=115.1

Q ss_pred             CCCcEEEEEcC--CChHHHHHHHHHHHCCCeEEEeecCc--hhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           64 VKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDL--DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        64 ~~~~~vlVtGa--tG~iG~~l~~~L~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      +++|+++||||  +++||.+++++|+++|++|++++|+.  +..++.......++.++++|++| .+++++++.      
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~   83 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTN-EEHLASLADRVREHV   83 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCC-HHHHHHHHHHHHHHc
Confidence            45799999999  89999999999999999999988764  22222222122357789999999 666665543      


Q ss_pred             CCCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 DDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                      +++|++|||||+...            +++...+++|+.++.++++.+...  .-+++|++|+....             
T Consensus        84 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~-------------  150 (256)
T PRK07889         84 DGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV-------------  150 (256)
T ss_pred             CCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc-------------
Confidence            249999999997531            112335789999998888776421  22589988754210             


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ....+..|+.+|++.+.+.+       +.|+++++|.||.+.++.
T Consensus       151 ~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~  195 (256)
T PRK07889        151 AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLA  195 (256)
T ss_pred             cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChh
Confidence            01235678999999887654       368999999999999875

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.81  E-value=5.8e-19  Score=148.09  Aligned_cols=164  Identities=20%  Similarity=0.156  Sum_probs=122.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c---CCCCeEEEEeeCCCChHHHHHHH---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K---DNPSLQIVKADVTEGSAKLSEAI---  132 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~---~~~~~~~i~~Dl~d~~~~~~~~~---  132 (252)
                      ..+++|+++||||+.+||++++++|++.|++|++.+|+.+..+....   .   ...++..+.+|+++ .+++++.+   
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~l~~~~   82 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSK-EVDVEKLVEFA   82 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCC-HHHHHHHHHHH
Confidence            45679999999999999999999999999999999999876543221   1   23568899999998 44433332   


Q ss_pred             ----cCCCcEEEEcCCCCCC---------CCCCCcceehHHH-HHHHHHHH----HhcCCCEEEEEccceeeccCCCCCC
Q 025456          133 ----GDDSEAVVCATGFQPG---------WDLFAPWKVDNFG-TVNLVEAC----RKRGVNRFILISSILVNGAAMGQIL  194 (252)
Q Consensus       133 ----~~~~d~vi~~ag~~~~---------~~~~~~~~~n~~g-~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~  194 (252)
                          .+++|++|||||....         ++|+..+++|+.| ..++.+++    ++.+.+.++++||...+.....   
T Consensus        83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~---  159 (270)
T KOG0725|consen   83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPG---  159 (270)
T ss_pred             HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC---
Confidence                2359999999997542         2466778999995 66666665    3445578999998854322111   


Q ss_pred             CcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                              ....|+.+|.+.+++.+       ++|+|+++|.||.+.++.
T Consensus       160 --------~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~  201 (270)
T KOG0725|consen  160 --------SGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSL  201 (270)
T ss_pred             --------CcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCc
Confidence                    11568899999998775       469999999999999986

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.81  E-value=5.5e-19  Score=145.87  Aligned_cols=159  Identities=21%  Similarity=0.258  Sum_probs=114.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      |+++||||+|+||++++++|+++|++|+++.| +++...+..   .....++.++.+|++| .+++.+.+.+      ++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS-FESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHcCCC
Confidence            58999999999999999999999999999888 433332211   1123468899999999 6666554431      38


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHH----HHhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEA----CRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~----~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||+|....        .++...+++|+.++.++++.    +++.+.++||++||.......            ..+
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~------------~~~  147 (242)
T TIGR01829        80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQ------------FGQ  147 (242)
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC------------CCc
Confidence            999999986532        12344568899997775554    456677899999997432111            123


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..|..+|.+.+.+++       ..+++++.++||.+.++..
T Consensus       148 ~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~  188 (242)
T TIGR01829       148 TNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMV  188 (242)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccc
Confidence            568889987765543       3589999999999988753

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.81  E-value=2.9e-19  Score=148.32  Aligned_cols=160  Identities=19%  Similarity=0.251  Sum_probs=113.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEee-cCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHc------CC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG------DD  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~-r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~  135 (252)
                      +|+++||||+|+||.++++.|+++|++|+++. |+++..+..   +.....++.++++|++| .+++.+++.      ++
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   80 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVAN-EADVIAMFDAVQSAFGR   80 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCC-HHHHHHHHHHHHHhcCC
Confidence            57999999999999999999999999998765 444433322   11123468899999999 666655443      14


Q ss_pred             CcEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHHH-h---cC---CCEEEEEccceee-ccCCCCCCCcch
Q 025456          136 SEAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACR-K---RG---VNRFILISSILVN-GAAMGQILNPAY  198 (252)
Q Consensus       136 ~d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~~-~---~~---~~~~v~~SS~~v~-~~~~~~~~~~~~  198 (252)
                      +|+||||||.....         ++...+.+|+.++.++++.+. .   .+   -++||++||...+ +..         
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~---------  151 (248)
T PRK06947         81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP---------  151 (248)
T ss_pred             CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC---------
Confidence            99999999964321         123457899999988876542 2   11   2469999987532 211         


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         ..+..|+.+|.+.+.+++       ..|+++++++||.+.++..
T Consensus       152 ---~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~  195 (248)
T PRK06947        152 ---NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIH  195 (248)
T ss_pred             ---CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccc
Confidence               113468899998886653       2489999999999998853

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.80  E-value=1.7e-18  Score=147.56  Aligned_cols=174  Identities=17%  Similarity=0.245  Sum_probs=125.5

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc----c-cCCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----S-KDNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~-~~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      .++.+++++||||+++||.+++++|+.+|.+|++..|+..+.++..    . ....++.++++|+++ .+++.+....  
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLss-l~SV~~fa~~~~  109 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSS-LKSVRKFAEEFK  109 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-HHHHHHHHHHHH
Confidence            4456899999999999999999999999999999999986554322    1 134578889999999 7777665432  


Q ss_pred             ----CCcEEEEcCCCCC------CCCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccC-CCCCCCcchh
Q 025456          135 ----DSEAVVCATGFQP------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAA-MGQILNPAYI  199 (252)
Q Consensus       135 ----~~d~vi~~ag~~~------~~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~-~~~~~~~~~~  199 (252)
                          ++|++|||||+..      .+..+..+.+|+.|.+.+.+.+    +.....|||++||... +.. .-...+....
T Consensus       110 ~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~~~  188 (314)
T KOG1208|consen  110 KKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGEKA  188 (314)
T ss_pred             hcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccchhc
Confidence                5999999999754      2345677899999988777765    4444369999999864 111 0001111111


Q ss_pred             c-cchhhHHHHHHHHHHHHHH----H--cCCcEEEEeCCcccCCC
Q 025456          200 F-LNVFGLTLIAKLQAEQYIR----K--SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~-~~~~~~y~~sK~~~e~~~~----~--~gi~~~~lrPg~i~~~~  237 (252)
                      . ......|+.||.+...+..    +  .|+.++.+.||.+.+..
T Consensus       189 ~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~  233 (314)
T KOG1208|consen  189 KLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTG  233 (314)
T ss_pred             cCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccc
Confidence            1 3444569999998764442    2  28999999999998873

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.80  E-value=5.3e-19  Score=148.97  Aligned_cols=158  Identities=18%  Similarity=0.214  Sum_probs=114.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cC-CCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KD-NPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~-~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      |+++||||+|+||.+++++|+++|++|++++|+.+..+....   .. ...+.++.+|++| .+++.+.+..      ++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISD-YDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC-HHHHHHHHHHHHHhcCCC
Confidence            479999999999999999999999999999998765443221   11 1234567899999 6665544432      38


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hc-CCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KR-GVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~-~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |+||||+|....        .+++..+++|+.++.++++++.    +. ..++||++||...+..            ...
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~------------~~~  147 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVA------------LPW  147 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCC------------CCC
Confidence            999999986432        1234567899999999999873    22 2368999999753211            112


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +..|+.+|.+.+.+.+       .+++++++++||.+.++.
T Consensus       148 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~  188 (272)
T PRK07832        148 HAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPL  188 (272)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence            3568888987765543       468999999999998875

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.80  E-value=3.6e-19  Score=147.00  Aligned_cols=165  Identities=15%  Similarity=0.198  Sum_probs=122.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHH-------HHHHH
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAK-------LSEAI  132 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~-------~~~~~  132 (252)
                      .+.++++|+||||++|+|++++.+++++|..+++.+.+.+..++..+.  ...+++.+.+|++| .++       +++.+
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~-~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD-REEIYRLAKKVKKEV  112 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCC-HHHHHHHHHHHHHhc
Confidence            456799999999999999999999999999999999987665543221  11368999999999 444       44444


Q ss_pred             cCCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHH----HHHHHhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          133 GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNL----VEACRKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~l----l~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      +. +|++|||||+...        ++.+..+++|+.|.+..    +..+.+.+-+++|.++|...+-..           
T Consensus       113 G~-V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~-----------  180 (300)
T KOG1201|consen  113 GD-VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGP-----------  180 (300)
T ss_pred             CC-ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCC-----------
Confidence            44 9999999998652        22345689999996665    444566666899999998654222           


Q ss_pred             cchhhHHHHHHHHHHHHHH----------HcCCcEEEEeCCcccCCCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR----------KSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~----------~~gi~~~~lrPg~i~~~~~~~  240 (252)
                       .....|..||+++..+.+          ..|++.+.+-|+.+.+.+-.+
T Consensus       181 -~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~  229 (300)
T KOG1201|consen  181 -AGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG  229 (300)
T ss_pred             -ccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC
Confidence             234678899998865443          247999999999998876543

>TIGR02415 23BDH acetoin reductases

Probab=99.80  E-value=5.1e-19  Score=147.30  Aligned_cols=158  Identities=23%  Similarity=0.289  Sum_probs=117.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      |+++||||+|+||.+++++|+++|++|+++.|+.+..++..   .....++.++.+|++| .+++.+++..      ++|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD-KDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCCCC
Confidence            58999999999999999999999999999999865543322   1134568899999999 7776665432      389


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      +||||+|....        .+++..+++|+.++.++++++.    +.+ .+++|++||.......            ..+
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~  147 (254)
T TIGR02415        80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN------------PIL  147 (254)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC------------CCC
Confidence            99999987432        1234567899999988777663    333 2689999986432111            124


Q ss_pred             hHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+++.       .++++++++||.+.++.
T Consensus       148 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~  187 (254)
T TIGR02415       148 SAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPM  187 (254)
T ss_pred             cchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChh
Confidence            6788999998877642       48999999999998775

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.4e-18  Score=142.87  Aligned_cols=158  Identities=11%  Similarity=0.033  Sum_probs=115.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++++++||||+++||++++++|+++|++|++++|+.+..++...   ....++..+.+|++| .+++.+++.      +
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS-QESIRHLFDAIEQQFN   81 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999999876654322   123457788899999 666655442      2


Q ss_pred             -CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcC-CCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 -DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 -~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                       ++|++|||+|....         .++.+.+++|+.++..+++.+    ++.+ .+.||++||...+             
T Consensus        82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-------------  148 (227)
T PRK08862         82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH-------------  148 (227)
T ss_pred             CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-------------
Confidence             49999999974321         122334567777776665543    4433 4689999986321             


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        ..+..|..+|++.+.+.+       .+|++++.|.||.+.++.
T Consensus       149 --~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~  191 (227)
T PRK08862        149 --QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANG  191 (227)
T ss_pred             --CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCC
Confidence              124568899999887664       368999999999998874

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.80  E-value=6.3e-19  Score=147.29  Aligned_cols=161  Identities=18%  Similarity=0.211  Sum_probs=121.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++++++||||+|+||.+++++|+++|++ |++++|+.+.....   +.....++.++.+|+++ .+++.+++..     
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD-VEDCRRVVAAADEAF   82 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            46899999999999999999999999998 99999986554321   11133467889999999 7766665532     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       ++|+||||+|.....        +++..+++|+.++.++++++.    +.+ .+++|++||...++..           
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-----------  151 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-----------  151 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC-----------
Confidence             389999999875421        223457899999999888773    222 3689999998765422           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       .....|+.+|.+.|.+.+       ..+++++.++||++.++.
T Consensus       152 -~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~  194 (260)
T PRK06198        152 -PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEG  194 (260)
T ss_pred             -CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcc
Confidence             124678999999987765       247999999999998875

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.80  E-value=5.5e-19  Score=148.08  Aligned_cols=160  Identities=16%  Similarity=0.190  Sum_probs=114.4

Q ss_pred             CCCcEEEEEcC--CChHHHHHHHHHHHCCCeEEEeecC---chhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRD---LDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGa--tG~iG~~l~~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||  +++||++++++|+++|++|++++|.   .+..+...... .....+++|++| .+++.++++.    
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d-~~~v~~~~~~~~~~   81 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF-GSDLVFPCDVAS-DEQIDALFASLGQH   81 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc-CCcceeeccCCC-HHHHHHHHHHHHHH
Confidence            46899999996  6799999999999999999987654   22222222111 223468899999 6666655532    


Q ss_pred             --CCcEEEEcCCCCCC-------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 --DSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 --~~d~vi~~ag~~~~-------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                        ++|++|||||....             .+|+..+++|+.++.++++++...  +-+++|++||.....   +      
T Consensus        82 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~---~------  152 (260)
T PRK06997         82 WDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER---V------  152 (260)
T ss_pred             hCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc---C------
Confidence              49999999997431             123456789999999888887432  226899999875321   1      


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                         ...+..|..+|++.+.+.+       ++|++++.|.||.+.++.
T Consensus       153 ---~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~  196 (260)
T PRK06997        153 ---VPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLA  196 (260)
T ss_pred             ---CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccch
Confidence               1124569999999887664       358999999999998864

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.4e-18  Score=144.35  Aligned_cols=158  Identities=16%  Similarity=0.213  Sum_probs=112.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++++++++||||+|+||++++++|+++|++|++++|+......... . .....+.+|++| .+++.+.+++ +|++|||
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~-~-~~~~~~~~D~~~-~~~~~~~~~~-iDilVnn   86 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESND-E-SPNEWIKWECGK-EESLDKQLAS-LDVLILN   86 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhc-c-CCCeEEEeeCCC-HHHHHHhcCC-CCEEEEC
Confidence            4568999999999999999999999999999999998622211111 1 123678899999 8888888887 9999999


Q ss_pred             CCCCCC-----CCCCCcceehHHHHHHHHHHHHh----c---CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHH
Q 025456          143 TGFQPG-----WDLFAPWKVDNFGTVNLVEACRK----R---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       143 ag~~~~-----~~~~~~~~~n~~g~~~ll~~~~~----~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~s  210 (252)
                      ||....     .++++.+++|+.++.++++++..    .   +.+.++..||.....        +     .....|+.+
T Consensus        87 AG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~--------~-----~~~~~Y~aS  153 (245)
T PRK12367         87 HGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ--------P-----ALSPSYEIS  153 (245)
T ss_pred             CccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC--------C-----CCCchhHHH
Confidence            997432     24556789999999999988732    1   122343444432111        0     013569999


Q ss_pred             HHHHHHHH---H-------HcCCcEEEEeCCcccCCC
Q 025456          211 KLQAEQYI---R-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       211 K~~~e~~~---~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      |++.+.+.   +       +.++.++.+.||.+.++.
T Consensus       154 Kaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~  190 (245)
T PRK12367        154 KRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSEL  190 (245)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccEEEEecCCCccccc
Confidence            99874322   1       358999999999987764

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.79  E-value=8.5e-19  Score=144.71  Aligned_cols=157  Identities=20%  Similarity=0.214  Sum_probs=114.3

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCch-hhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      ++||||+|+||.+++++|+++|++|++++|..+ ..+..   +.....++.++.+|++| .+++.+++..      ++|+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVAD-RVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            589999999999999999999999998887643 22221   12234568999999999 7666655432      4899


Q ss_pred             EEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH-----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC-----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       139 vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~-----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +|||+|....        .++...+++|+.++.++++++     ++.+.++||++||...+...            ....
T Consensus        80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~------------~~~~  147 (239)
T TIGR01831        80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGN------------RGQV  147 (239)
T ss_pred             EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCC------------CCCc
Confidence            9999986432        234556889999999998875     23445789999997532211            1235


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|..+|++.+.+.+       ..|++++.++||.+.++..
T Consensus       148 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  187 (239)
T TIGR01831       148 NYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEML  187 (239)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccc
Confidence            68888887765543       3589999999999988864

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.79  E-value=2.6e-18  Score=141.70  Aligned_cols=162  Identities=18%  Similarity=0.100  Sum_probs=117.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++|+||||+|+||.++++.|+++|++|++++|+++..+.....  ...+++++++|++| .+++.+.+++      +
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   81 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS-TESARNVIEKAAKVLNA   81 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence            4579999999999999999999999999999999987765432111  12368899999999 6666554432      3


Q ss_pred             CcEEEEcCCCCCCC------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          136 SEAVVCATGFQPGW------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       136 ~d~vi~~ag~~~~~------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      +|.+||++|.....      +++..+++|+.+..++++.+...  ..+++|++||......           +......|
T Consensus        82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~-----------~~~~~~~Y  150 (238)
T PRK05786         82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK-----------ASPDQLSY  150 (238)
T ss_pred             CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc-----------CCCCchHH
Confidence            79999999854321      12344678888888887777432  2258999998643110           01234679


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+|.+.+.+++       ..++++++++||+++++.
T Consensus       151 ~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~  187 (238)
T PRK05786        151 AVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDF  187 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCC
Confidence            999998876543       358999999999999874

>PRK08324 short chain dehydrogenase; Validated

Probab=99.79  E-value=1.6e-18  Score=163.27  Aligned_cols=159  Identities=23%  Similarity=0.293  Sum_probs=121.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccC--CCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      .+.+++++||||+|+||+++++.|+++|++|++++|+.+..+......  ..++.++.+|++| .+++.+++..      
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd-~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTD-EAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence            356899999999999999999999999999999999987654332211  1478899999999 7766665531      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCC-CEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGV-NRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~-~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||||.....        ++...+++|+.++.++++++    ++.+. ++||++||...+...            
T Consensus       498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~------------  565 (681)
T PRK08324        498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG------------  565 (681)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC------------
Confidence            399999999965421        24456789999999997776    44454 699999997543211            


Q ss_pred             chhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCccc
Q 025456          202 NVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLR  234 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~  234 (252)
                      .....|+.+|.+.+.+++.       .|+++++++|+.++
T Consensus       566 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~  605 (681)
T PRK08324        566 PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVV  605 (681)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceee
Confidence            2247899999999887652       47999999999995

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.78  E-value=3.2e-18  Score=160.72  Aligned_cols=161  Identities=20%  Similarity=0.245  Sum_probs=119.1

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-----CCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      ..+++|+++||||+|+||++++++|+++|++|++++|+.+..+.....     ...++..+++|++| .+++.+++..  
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd-~~~v~~a~~~i~  488 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD-EQAVKAAFADVA  488 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC-HHHHHHHHHHHH
Confidence            446789999999999999999999999999999999987655432211     12357789999999 7777766642  


Q ss_pred             ----CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcC-CCEEEEEccceeeccCCCCCCCcc
Q 025456          135 ----DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~-~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                          ++|+||||||.....        ++...+++|+.+...+++.+    ++.+ .++||++||...+..         
T Consensus       489 ~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~---------  559 (676)
T TIGR02632       489 LAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYA---------  559 (676)
T ss_pred             HhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCC---------
Confidence                399999999975421        23455678888877765444    4444 358999999743211         


Q ss_pred             hhccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRN  235 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~  235 (252)
                         ......|+.+|++.+.+++.       .|++++.|+||.+.+
T Consensus       560 ---~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~  601 (676)
T TIGR02632       560 ---GKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQ  601 (676)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceec
Confidence               11247899999999887652       589999999998864

>PRK05599 hypothetical protein; Provisional

Probab=99.78  E-value=4.7e-18  Score=141.25  Aligned_cols=158  Identities=19%  Similarity=0.168  Sum_probs=112.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cC-CCCeEEEEeeCCCChHHHHHHHc------CCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KD-NPSLQIVKADVTEGSAKLSEAIG------DDS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~-~~~~~~i~~Dl~d~~~~~~~~~~------~~~  136 (252)
                      |+++||||+++||.+++++|+ +|++|++++|+.++.++...   .. ...+.++++|++| .+++++++.      +++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQD-LDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCC-HHHHHHHHHHHHHhcCCC
Confidence            579999999999999999998 59999999998876654321   11 2347889999999 666655432      249


Q ss_pred             cEEEEcCCCCCCCC--------CCCcceehHHHHHHHHHH----HHhcC-CCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPGWD--------LFAPWKVDNFGTVNLVEA----CRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~~~--------~~~~~~~n~~g~~~ll~~----~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |++|||+|......        +.+.+++|+.+..+++..    +++.+ -++||++||...+-.            ...
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~------------~~~  146 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRA------------RRA  146 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccC------------CcC
Confidence            99999999753211        113356788887765544    44443 368999999753211            112


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|..+|++.+.+.+       ..|++++.+.||.+.++..
T Consensus       147 ~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~  188 (246)
T PRK05599        147 NYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMT  188 (246)
T ss_pred             CcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhh
Confidence            4578999998876654       3589999999999988753

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.78  E-value=2.1e-18  Score=162.49  Aligned_cols=148  Identities=18%  Similarity=0.168  Sum_probs=111.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~a  143 (252)
                      ..|+||||||+||||++|++.|.++|++|...                     .+|++| .+.+.+.+.. ++|+|||+|
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~---------------------~~~l~d-~~~v~~~i~~~~pd~Vih~A  436 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG---------------------KGRLED-RSSLLADIRNVKPTHVFNAA  436 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------cccccc-HHHHHHHHHhhCCCEEEECC
Confidence            45799999999999999999999999987311                     135777 6777777764 599999999


Q ss_pred             CCCCC-------CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCC------CCCCCcchhccchhhHHHHH
Q 025456          144 GFQPG-------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM------GQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       144 g~~~~-------~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~------~~~~~~~~~~~~~~~~y~~s  210 (252)
                      +....       .++...+++|+.|+.+++++|++.++ ++|++||.++|+...      +.+..++..+..+.+.|+.+
T Consensus       437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~Yg~s  515 (668)
T PLN02260        437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSFYSKT  515 (668)
T ss_pred             cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCCCCCCCChhhHH
Confidence            87531       24556788999999999999999998 577888888875321      22444444333344789999


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCcccCC
Q 025456          211 KLQAEQYIRKSGINYTIIRPGGLRNE  236 (252)
Q Consensus       211 K~~~e~~~~~~gi~~~~lrPg~i~~~  236 (252)
                      |.++|++++.+ .++.++|+.++++.
T Consensus       516 K~~~E~~~~~~-~~~~~~r~~~~~~~  540 (668)
T PLN02260        516 KAMVEELLREY-DNVCTLRVRMPISS  540 (668)
T ss_pred             HHHHHHHHHhh-hhheEEEEEEeccc
Confidence            99999999875 36667777777753

>PRK12320 hypothetical protein; Provisional

Probab=99.78  E-value=5.8e-18  Score=157.08  Aligned_cols=137  Identities=26%  Similarity=0.357  Sum_probs=109.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|+||||+||||++++++|+++|++|++++|.+...      ...+++++.+|++| .. +.+++.+ +|+|||+|+..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~------~~~~ve~v~~Dl~d-~~-l~~al~~-~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA------LDPRVDYVCASLRN-PV-LQELAGE-ADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc------ccCCceEEEccCCC-HH-HHHHhcC-CCEEEEcCccC
Confidence            4799999999999999999999999999999875431      12468999999998 54 7778888 99999999864


Q ss_pred             CCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCcEE
Q 025456          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT  226 (252)
Q Consensus       147 ~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~~  226 (252)
                      ..    ....+|+.|+.+++++|++.++ ++||+||.  +|..      .         .|.    .+|.++..++++++
T Consensus        72 ~~----~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~--~G~~------~---------~~~----~aE~ll~~~~~p~~  125 (699)
T PRK12320         72 TS----APGGVGITGLAHVANAAARAGA-RLLFVSQA--AGRP------E---------LYR----QAETLVSTGWAPSL  125 (699)
T ss_pred             cc----chhhHHHHHHHHHHHHHHHcCC-eEEEEECC--CCCC------c---------ccc----HHHHHHHhcCCCEE
Confidence            32    1235899999999999999997 89999986  2211      0         011    35777777789999


Q ss_pred             EEeCCcccCCCC
Q 025456          227 IIRPGGLRNEPP  238 (252)
Q Consensus       227 ~lrPg~i~~~~~  238 (252)
                      ++|++++||+..
T Consensus       126 ILR~~nVYGp~~  137 (699)
T PRK12320        126 VIRIAPPVGRQL  137 (699)
T ss_pred             EEeCceecCCCC
Confidence            999999999854

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.78  E-value=3.9e-18  Score=143.33  Aligned_cols=156  Identities=21%  Similarity=0.189  Sum_probs=109.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhc---ccc-CCCCeEEEEeeCCCChHHH----HHHH-----
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTT---LSK-DNPSLQIVKADVTEGSAKL----SEAI-----  132 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~---~~~-~~~~~~~i~~Dl~d~~~~~----~~~~-----  132 (252)
                      ++++||||+|+||++++++|+++|++|+++.|+ .+..+..   +.. ...++.++.+|++| .+++    .+.+     
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSN-SATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCC-chhhHHHHHHHHHHHHH
Confidence            689999999999999999999999999988764 3333322   111 12356778999999 5432    2222     


Q ss_pred             --cCCCcEEEEcCCCCCC-----CC--------------CCCcceehHHHHHHHHHHHHhc----------CCCEEEEEc
Q 025456          133 --GDDSEAVVCATGFQPG-----WD--------------LFAPWKVDNFGTVNLVEACRKR----------GVNRFILIS  181 (252)
Q Consensus       133 --~~~~d~vi~~ag~~~~-----~~--------------~~~~~~~n~~g~~~ll~~~~~~----------~~~~~v~~S  181 (252)
                        .+ +|+||||||....     .+              +...+++|+.++.++++++...          ..+++|++|
T Consensus        81 ~~g~-iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~  159 (267)
T TIGR02685        81 AFGR-CDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLC  159 (267)
T ss_pred             ccCC-ceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEeh
Confidence              34 9999999996431     11              2245789999999998876321          123688888


Q ss_pred             cceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          182 SILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       182 S~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                      |.....            +...+..|+.+|++.+.+.+       ..|+++++|+||.+.++
T Consensus       160 s~~~~~------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~  209 (267)
T TIGR02685       160 DAMTDQ------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLP  209 (267)
T ss_pred             hhhccC------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCc
Confidence            763211            12335679999999987765       35899999999998655

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.77  E-value=3.1e-17  Score=142.32  Aligned_cols=174  Identities=43%  Similarity=0.591  Sum_probs=127.9

Q ss_pred             hcccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc--cCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        60 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .....+.++|+|+||||.+|+-+++.|+++|+.|++++|+..+..+.+.  ..+.....+..|...+.+.+......   
T Consensus        73 ~~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~  152 (411)
T KOG1203|consen   73 NNNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPK  152 (411)
T ss_pred             CCCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccc
Confidence            3345567999999999999999999999999999999999887766543  12445666777766634444444433   


Q ss_pred             CCcEEEEcCCCCCCC-CCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHH
Q 025456          135 DSEAVVCATGFQPGW-DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ  213 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~-~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~  213 (252)
                      ...+++-|+|..++. |....+.++..|+.|++++|+.+|++|+|++||++.--      .+..+........+..+|..
T Consensus       153 ~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~------~~~~~~~~~~~~~~~~~k~~  226 (411)
T KOG1203|consen  153 GVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTK------FNQPPNILLLNGLVLKAKLK  226 (411)
T ss_pred             cceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcc------cCCCchhhhhhhhhhHHHHh
Confidence            134666677655543 34455689999999999999999999999999875311      11222222224566789999


Q ss_pred             HHHHHHHcCCcEEEEeCCcccCCCCC
Q 025456          214 AEQYIRKSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       214 ~e~~~~~~gi~~~~lrPg~i~~~~~~  239 (252)
                      +|+++++.|+++++||||....+...
T Consensus       227 ~e~~~~~Sgl~ytiIR~g~~~~~~~~  252 (411)
T KOG1203|consen  227 AEKFLQDSGLPYTIIRPGGLEQDTGG  252 (411)
T ss_pred             HHHHHHhcCCCcEEEeccccccCCCC
Confidence            99999999999999999987775443

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.77  E-value=4.6e-18  Score=140.01  Aligned_cols=155  Identities=21%  Similarity=0.234  Sum_probs=114.5

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCch-hhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      ++|||++|+||++++++|+++|++|++++|+.. ....   .+.....++.++.+|++| .+++.+.+.+      ++|+
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSD-REDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCCE
Confidence            589999999999999999999999999988752 2211   122123458899999999 7766665532      3899


Q ss_pred             EEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEcccee-eccCCCCCCCcchhccchhh
Q 025456          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILV-NGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       139 vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v-~~~~~~~~~~~~~~~~~~~~  205 (252)
                      |||++|....        .+++..+++|+.++.++++.+..    .+.++||++||... ++..             ...
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~-------------~~~  146 (239)
T TIGR01830        80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNA-------------GQA  146 (239)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC-------------CCc
Confidence            9999997532        12345678999999999998854    45579999999754 3321             235


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .|+.+|.+.+.+++       ..|+++++++||.+.++.
T Consensus       147 ~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~  185 (239)
T TIGR01830       147 NYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDM  185 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChh
Confidence            68889987776543       258999999999987754

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.77  E-value=1.8e-18  Score=144.57  Aligned_cols=157  Identities=15%  Similarity=0.196  Sum_probs=114.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHH----CCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           68 KIFVAGATGSSGKRIVEQLLA----KGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~----~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++||||+++||.+++++|++    +|++|+++.|+.+..++...   .  ...++.++.+|++| .+++.+++..    
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~-~~~v~~~~~~~~~~   80 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGA-EAGLEQLLKALREL   80 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCC-HHHHHHHHHHHHhc
Confidence            689999999999999999997    79999999998776543221   1  12368889999999 7766655432    


Q ss_pred             --C----CcEEEEcCCCCCC-----C------CCCCcceehHHHHHHHHHHHH----hc-C-CCEEEEEccceeeccCCC
Q 025456          135 --D----SEAVVCATGFQPG-----W------DLFAPWKVDNFGTVNLVEACR----KR-G-VNRFILISSILVNGAAMG  191 (252)
Q Consensus       135 --~----~d~vi~~ag~~~~-----~------~~~~~~~~n~~g~~~ll~~~~----~~-~-~~~~v~~SS~~v~~~~~~  191 (252)
                        .    .|+||||||....     .      +++..+++|+.++.++++.+.    +. + .++||++||...+..   
T Consensus        81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~---  157 (256)
T TIGR01500        81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP---  157 (256)
T ss_pred             cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC---
Confidence              1    2699999986321     1      123467899999888777663    32 2 258999999754321   


Q ss_pred             CCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          192 QILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                               ...+..|+.+|++.+.+.+       ..|++++++.||++.++.
T Consensus       158 ---------~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~  201 (256)
T TIGR01500       158 ---------FKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDM  201 (256)
T ss_pred             ---------CCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchH
Confidence                     1234679999999987764       258999999999998875

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.77  E-value=2.6e-18  Score=146.57  Aligned_cols=165  Identities=17%  Similarity=0.151  Sum_probs=112.9

Q ss_pred             ccCCCcEEEEEcC--CChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc------------C----CCCeEEEEeeC--
Q 025456           62 VSVKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------------D----NPSLQIVKADV--  121 (252)
Q Consensus        62 ~~~~~~~vlVtGa--tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~------------~----~~~~~~i~~Dl--  121 (252)
                      .++++|+++||||  +++||.++++.|+++|++|++ .|+.+++++....            .    ......+.+|+  
T Consensus         5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   83 (303)
T PLN02730          5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF   83 (303)
T ss_pred             cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence            3467999999999  899999999999999999988 6665443221100            0    01246788898  


Q ss_pred             CCCh-----------------HHHHHHHc------CCCcEEEEcCCCCC----------CCCCCCcceehHHHHHHHHHH
Q 025456          122 TEGS-----------------AKLSEAIG------DDSEAVVCATGFQP----------GWDLFAPWKVDNFGTVNLVEA  168 (252)
Q Consensus       122 ~d~~-----------------~~~~~~~~------~~~d~vi~~ag~~~----------~~~~~~~~~~n~~g~~~ll~~  168 (252)
                      ++..                 +++.+++.      +++|++|||||...          ..+|+..+++|+.++++++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~  163 (303)
T PLN02730         84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH  163 (303)
T ss_pred             CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence            3311                 13343332      14999999997421          124566789999999888887


Q ss_pred             HHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------H-cCCcEEEEeCCcccCCCC
Q 025456          169 CRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       169 ~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~-~gi~~~~lrPg~i~~~~~  238 (252)
                      +...  .-+++|++||.......      +     .....|..+|++.+.+.+       + .|++++.|.||.+.++..
T Consensus       164 ~~p~m~~~G~II~isS~a~~~~~------p-----~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~  232 (303)
T PLN02730        164 FGPIMNPGGASISLTYIASERII------P-----GYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAA  232 (303)
T ss_pred             HHHHHhcCCEEEEEechhhcCCC------C-----CCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchh
Confidence            6321  11699999997432110      0     112469999999987654       2 489999999999999864

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.77  E-value=3.9e-18  Score=153.64  Aligned_cols=160  Identities=18%  Similarity=0.132  Sum_probs=118.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh--hhhccccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      .+++++++||||+|+||.++++.|+++|++|++++|....  ..+...  ..+..++.+|++| .+++.+.+..      
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~--~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g  283 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVAN--RVGGTALALDITA-PDAPARIAEHLAERHG  283 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHH--HcCCeEEEEeCCC-HHHHHHHHHHHHHhCC
Confidence            4568999999999999999999999999999999885322  222111  1234678999999 6666655431      


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhcC----CCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG----VNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~~----~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||+|+...        .+++..+++|+.++.++.+++....    .++||++||...+...            .
T Consensus       284 ~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~------------~  351 (450)
T PRK08261        284 GLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGN------------R  351 (450)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC------------C
Confidence            38999999997542        2345567899999999999986532    2689999997543211            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ....|+.+|.+.+.+++       +.|++++++.||.+.++.
T Consensus       352 ~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~  393 (450)
T PRK08261        352 GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQM  393 (450)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchh
Confidence            24679999997766553       368999999999988764

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.77  E-value=1.4e-17  Score=146.79  Aligned_cols=159  Identities=18%  Similarity=0.253  Sum_probs=116.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.++..........++..+.+|++| .+++.+.+++ +|++|||
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd-~~~v~~~l~~-IDiLInn  252 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQ-EAALAELLEK-VDILIIN  252 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC-HHHHHHHhCC-CCEEEEC
Confidence            4568999999999999999999999999999999998765543322122357788999999 8889888888 9999999


Q ss_pred             CCCCCC-----CCCCCcceehHHHHHHHHHHHH----hcC----CCEEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          143 TGFQPG-----WDLFAPWKVDNFGTVNLVEACR----KRG----VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       143 ag~~~~-----~~~~~~~~~n~~g~~~ll~~~~----~~~----~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                      ||....     +++++.+++|+.|+.++++++.    +.+    .+.+|++|+... .        +     .....|..
T Consensus       253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-~--------~-----~~~~~Y~A  318 (406)
T PRK07424        253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-N--------P-----AFSPLYEL  318 (406)
T ss_pred             CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-c--------C-----CCchHHHH
Confidence            986532     1345668999999999998873    222    123555554311 0        0     11256999


Q ss_pred             HHHHHHHHHH----HcCCcEEEEeCCcccCCC
Q 025456          210 AKLQAEQYIR----KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       210 sK~~~e~~~~----~~gi~~~~lrPg~i~~~~  237 (252)
                      +|.+.+.+..    +.++.+..+.||.+.++.
T Consensus       319 SKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~~  350 (406)
T PRK07424        319 SKRALGDLVTLRRLDAPCVVRKLILGPFKSNL  350 (406)
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEeCCCcCCC
Confidence            9999887532    246677788888877654

>PLN00015 protochlorophyllide reductase

Probab=99.76  E-value=9.3e-18  Score=144.01  Aligned_cols=168  Identities=18%  Similarity=0.232  Sum_probs=114.8

Q ss_pred             EEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc------CCCcEE
Q 025456           70 FVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------DDSEAV  139 (252)
Q Consensus        70 lVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d~v  139 (252)
                      +||||+++||.+++++|+++| ++|++++|+.+..++...   ....++.++++|++| .+++.+++.      +++|+|
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~~~iD~l   79 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLAS-LDSVRQFVDNFRRSGRPLDVL   79 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCC-HHHHHHHHHHHHhcCCCCCEE
Confidence            599999999999999999999 999999998766543221   123467889999999 776665543      148999


Q ss_pred             EEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcC--CCEEEEEccceeeccCC-C--CC---C-C--
Q 025456          140 VCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRG--VNRFILISSILVNGAAM-G--QI---L-N--  195 (252)
Q Consensus       140 i~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~--~~~~v~~SS~~v~~~~~-~--~~---~-~--  195 (252)
                      |||||+...         .+++..+++|+.|++++++.+    ++.+  .++||++||...+-... +  .+   . +  
T Consensus        80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~  159 (308)
T PLN00015         80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR  159 (308)
T ss_pred             EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhh
Confidence            999997421         123456789999988876665    4443  46999999986531100 0  00   0 0  


Q ss_pred             --------c------chhccchhhHHHHHHHHHHHHH----HH----cCCcEEEEeCCcc-cCCCC
Q 025456          196 --------P------AYIFLNVFGLTLIAKLQAEQYI----RK----SGINYTIIRPGGL-RNEPP  238 (252)
Q Consensus       196 --------~------~~~~~~~~~~y~~sK~~~e~~~----~~----~gi~~~~lrPg~i-~~~~~  238 (252)
                              .      .......+..|..+|++.+.+.    ++    .|+++++++||++ .++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~  225 (308)
T PLN00015        160 GLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLF  225 (308)
T ss_pred             hhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCcccc
Confidence                    0      0011235677999999855432    22    4799999999999 45543

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.76  E-value=7.6e-18  Score=135.44  Aligned_cols=143  Identities=25%  Similarity=0.308  Sum_probs=110.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi~~ag  144 (252)
                      |+++||||+|+||.+++++|+++ ++|++++|+..              .+++|++| .+++++.++.  ++|+||||+|
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------~~~~D~~~-~~~~~~~~~~~~~id~lv~~ag   64 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------DVQVDITD-PASIRALFEKVGKVDAVVSAAG   64 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------ceEecCCC-hHHHHHHHHhcCCCCEEEECCC
Confidence            47999999999999999999999 99999988642              35789999 7777776653  4999999998


Q ss_pred             CCCC--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHH
Q 025456          145 FQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       145 ~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (252)
                      ....        .++.+.+++|+.++.++++++...  +.++|+++||......            ...+..|+.+|++.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~------------~~~~~~Y~~sK~a~  132 (199)
T PRK07578         65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEP------------IPGGASAATVNGAL  132 (199)
T ss_pred             CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCC------------CCCchHHHHHHHHH
Confidence            6431        134455789999999999887532  2358999998743211            12246789999988


Q ss_pred             HHHHH------HcCCcEEEEeCCcccCCC
Q 025456          215 EQYIR------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       215 e~~~~------~~gi~~~~lrPg~i~~~~  237 (252)
                      +.+.+      +.|++++.|.||.+.++.
T Consensus       133 ~~~~~~la~e~~~gi~v~~i~Pg~v~t~~  161 (199)
T PRK07578        133 EGFVKAAALELPRGIRINVVSPTVLTESL  161 (199)
T ss_pred             HHHHHHHHHHccCCeEEEEEcCCcccCch
Confidence            87654      358999999999998874

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.76  E-value=8.3e-18  Score=169.84  Aligned_cols=174  Identities=21%  Similarity=0.257  Sum_probs=126.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC----CeEEEeecCchhhhh---cc----------ccCCCCeEEEEeeCCCC----
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG----FAVKAGVRDLDKAKT---TL----------SKDNPSLQIVKADVTEG----  124 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G----~~V~~~~r~~~~~~~---~~----------~~~~~~~~~i~~Dl~d~----  124 (252)
                      .++|+|||||||+|.+++++|++++    ++|+++.|..+....   ..          .....+++++.+|++++    
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence            5899999999999999999999887    789999997543211   10          00124789999999862    


Q ss_pred             -hHHHHHHHcCCCcEEEEcCCCCCCCC-CCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCC-----------
Q 025456          125 -SAKLSEAIGDDSEAVVCATGFQPGWD-LFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG-----------  191 (252)
Q Consensus       125 -~~~~~~~~~~~~d~vi~~ag~~~~~~-~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~-----------  191 (252)
                       .+...++..+ +|+|||||+...... .......|+.|+.+++++|++.++++|+|+||.++|+....           
T Consensus      1051 ~~~~~~~l~~~-~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~ 1129 (1389)
T TIGR03443      1051 SDEKWSDLTNE-VDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELVQAG 1129 (1389)
T ss_pred             CHHHHHHHHhc-CCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhhhcc
Confidence             3445556666 999999998654322 22333579999999999999988899999999999864210           


Q ss_pred             -CCCCcch----hccchhhHHHHHHHHHHHHHHH---cCCcEEEEeCCcccCCCCCC
Q 025456          192 -QILNPAY----IFLNVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       192 -~~~~~~~----~~~~~~~~y~~sK~~~e~~~~~---~gi~~~~lrPg~i~~~~~~~  240 (252)
                       ....+..    ........|+.+|+.+|.++..   .|++++++|||.|+|+...+
T Consensus      1130 ~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g 1186 (1389)
T TIGR03443      1130 GAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVTGDSKTG 1186 (1389)
T ss_pred             CCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccccCCCcC
Confidence             0011110    1122345699999999988753   58999999999999986554

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.76  E-value=1.2e-17  Score=141.72  Aligned_cols=134  Identities=22%  Similarity=0.351  Sum_probs=103.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-----CC-CcEEEE
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-----DD-SEAVVC  141 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-----~~-~d~vi~  141 (252)
                      +|+||||||++|++++++|+++|++|++++|++++..      ..+++.+.+|+.| .+++.+++.     .. +|.|+|
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~------~~~~~~~~~d~~d-~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA------GPNEKHVKFDWLD-EDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc------CCCCccccccCCC-HHHHHHHHhcccCcCCceeEEEE
Confidence            4899999999999999999999999999999986532      2467778899999 899998883     12 899999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (252)
                      +++....         ......+++++|+++|+++||++||..++...                   ..+...|+++++.
T Consensus        74 ~~~~~~~---------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~-------------------~~~~~~~~~l~~~  125 (285)
T TIGR03649        74 VAPPIPD---------LAPPMIKFIDFARSKGVRRFVLLSASIIEKGG-------------------PAMGQVHAHLDSL  125 (285)
T ss_pred             eCCCCCC---------hhHHHHHHHHHHHHcCCCEEEEeeccccCCCC-------------------chHHHHHHHHHhc
Confidence            9874321         12356789999999999999999987442110                   1123346677775


Q ss_pred             -CCcEEEEeCCcccCC
Q 025456          222 -GINYTIIRPGGLRNE  236 (252)
Q Consensus       222 -gi~~~~lrPg~i~~~  236 (252)
                       |++++++||+++++.
T Consensus       126 ~gi~~tilRp~~f~~~  141 (285)
T TIGR03649       126 GGVEYTVLRPTWFMEN  141 (285)
T ss_pred             cCCCEEEEeccHHhhh
Confidence             999999999988764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.76  E-value=4.6e-18  Score=134.69  Aligned_cols=161  Identities=22%  Similarity=0.294  Sum_probs=122.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh--cccc--CCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT--TLSK--DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .+||++++|||.|+||+++.++|+++|..+.++..+.+..+.  .+..  ....+.|+++|+++ ..+++++++.     
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~-~~~~~~~f~ki~~~f   81 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTN-RGDLEAAFDKILATF   81 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEecccc-HHHHHHHHHHHHHHh
Confidence            458999999999999999999999999988887776655442  1211  34578999999999 7667766653     


Q ss_pred             -CCcEEEEcCCCCCCCCCCCcceehHHH----HHHHHHHHHh-cC--CCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          135 -DSEAVVCATGFQPGWDLFAPWKVDNFG----TVNLVEACRK-RG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~~~~~~~~~n~~g----~~~ll~~~~~-~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                       .+|++||+||+..+.||+.++.+|+.|    |...+.++.+ .|  -+-+|++||.....+            ......
T Consensus        82 g~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P------------~p~~pV  149 (261)
T KOG4169|consen   82 GTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDP------------MPVFPV  149 (261)
T ss_pred             CceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCc------------cccchh
Confidence             499999999999999999999999987    5666777743 32  257999999853211            112356


Q ss_pred             HHHHHHHH---------HHHHHHcCCcEEEEeCCcccCCC
Q 025456          207 TLIAKLQA---------EQYIRKSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       207 y~~sK~~~---------e~~~~~~gi~~~~lrPg~i~~~~  237 (252)
                      |+++|+..         +.+.++.|++++.+.||.+.+..
T Consensus       150 Y~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l  189 (261)
T KOG4169|consen  150 YAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDL  189 (261)
T ss_pred             hhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHH
Confidence            77888733         34566789999999999887753

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.76  E-value=7.1e-18  Score=133.54  Aligned_cols=173  Identities=21%  Similarity=0.328  Sum_probs=122.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC-CCeEEE-eecCchhhhhcccc---CCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK-GFAVKA-GVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~-~~r~~~~~~~~~~~---~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      .+.|+||||+.|||..|+++|++. |.++++ ..|++++....+..   .+.++++++.|+++ .+++.+...+      
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~-deS~~~~~~~V~~iVg   81 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTC-DESIDNFVQEVEKIVG   81 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEeccc-HHHHHHHHHHHHhhcc
Confidence            467999999999999999999975 666554 45667764332221   46899999999998 4444443321      


Q ss_pred             --CCcEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHH----HhcCC-----------CEEEEEccceeecc
Q 025456          135 --DSEAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEAC----RKRGV-----------NRFILISSILVNGA  188 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~----~~~~~-----------~~~v~~SS~~v~~~  188 (252)
                        .+|++|+|||+....         .|.+.+++|..|+..+.+.+    +++..           ..+|++||.+.-  
T Consensus        82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s--  159 (249)
T KOG1611|consen   82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS--  159 (249)
T ss_pred             cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc--
Confidence              389999999975421         14456899999987777665    33222           268999987532  


Q ss_pred             CCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCCCceEeeccc
Q 025456          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEV  248 (252)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~~~~~~~~~~  248 (252)
                       .+.      ....++..|..||.+...+.+       +.++-++.++||+|.|++..++-.+.+|+
T Consensus       160 -~~~------~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg~~a~ltvee  219 (249)
T KOG1611|consen  160 -IGG------FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGGKKAALTVEE  219 (249)
T ss_pred             -cCC------CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCCCCcccchhh
Confidence             111      112446889999999988765       35788999999999999987766555543

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.76  E-value=9.9e-18  Score=139.11  Aligned_cols=161  Identities=24%  Similarity=0.389  Sum_probs=124.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccC-CCCeEEEEeeCCCChHHHHHHHc-------C-
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD-NPSLQIVKADVTEGSAKLSEAIG-------D-  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~i~~Dl~d~~~~~~~~~~-------~-  134 (252)
                      ...|.|+|||+-.+.|..++++|.++|+.|.+....++..+.+.... .++...++.|+++ +++++++.+       + 
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~-~esi~~a~~~V~~~l~~~  105 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTK-PESVKEAAQWVKKHLGED  105 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCC-HHHHHHHHHHHHHhcccc
Confidence            45799999999999999999999999999999887776666555444 6889999999999 777776653       1 


Q ss_pred             CCcEEEEcCCCCC---CCC------CCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQP---GWD------LFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~---~~~------~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ..-.||||||+..   +.+      +...+++|+.|+..+..++    |++. +|+|++||...-   .         +.
T Consensus       106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-GRvVnvsS~~GR---~---------~~  172 (322)
T KOG1610|consen  106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLGR---V---------AL  172 (322)
T ss_pred             cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-CeEEEecccccC---c---------cC
Confidence            3789999999643   333      4456799999988777776    4544 699999998531   1         11


Q ss_pred             chhhHHHHHHHHHHHHH-------HHcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~-------~~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...++|..||++.|.+.       +.+|++|.+|.||.+.++..
T Consensus       173 p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~  216 (322)
T KOG1610|consen  173 PALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLA  216 (322)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccC
Confidence            23578899999999764       35899999999997777654

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.74  E-value=2.3e-17  Score=128.78  Aligned_cols=160  Identities=14%  Similarity=0.197  Sum_probs=120.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc---C---CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG---D---DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~---~---~~  136 (252)
                      ++++-+||||||+.|||.+++++|++.|-+|++..|+..++++... ..+.+....+|+.| .++.++.++   .   .+
T Consensus         2 k~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~-~~p~~~t~v~Dv~d-~~~~~~lvewLkk~~P~l   79 (245)
T COG3967           2 KTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA-ENPEIHTEVCDVAD-RDSRRELVEWLKKEYPNL   79 (245)
T ss_pred             cccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh-cCcchheeeecccc-hhhHHHHHHHHHhhCCch
Confidence            3468899999999999999999999999999999999988876554 44678888999998 555444332   1   48


Q ss_pred             cEEEEcCCCCCCCC----------CCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          137 EAVVCATGFQPGWD----------LFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       137 d~vi~~ag~~~~~~----------~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      +++|||||+....|          .++.+.+|+.++.++..++    .+..-.-+|.+||-..+-            |..
T Consensus        80 NvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv------------Pm~  147 (245)
T COG3967          80 NVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV------------PMA  147 (245)
T ss_pred             heeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC------------ccc
Confidence            99999999876322          2234678999988887776    344445899999964332            223


Q ss_pred             hhhHHHHHHHHHHHH-------HHHcCCcEEEEeCCcccCC
Q 025456          203 VFGLTLIAKLQAEQY-------IRKSGINYTIIRPGGLRNE  236 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~-------~~~~gi~~~~lrPg~i~~~  236 (252)
                      ....|..+|++..-|       ++..+++|+-+-|..|.++
T Consensus       148 ~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~  188 (245)
T COG3967         148 STPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT  188 (245)
T ss_pred             ccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence            345677888877644       3456899999999998886

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.74  E-value=1.1e-17  Score=131.16  Aligned_cols=160  Identities=18%  Similarity=0.237  Sum_probs=122.1

Q ss_pred             CCcEEEEEcCC-ChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-------CCC
Q 025456           65 KQKKIFVAGAT-GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDS  136 (252)
Q Consensus        65 ~~~~vlVtGat-G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~~~  136 (252)
                      +.++|+|||++ |+||.++++++.+.|+.|++..|+.+...++.  ...++...+.|+++ ++.+.+..+       |++
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~--~~~gl~~~kLDV~~-~~~V~~v~~evr~~~~Gkl   82 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA--IQFGLKPYKLDVSK-PEEVVTVSGEVRANPDGKL   82 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH--HhhCCeeEEeccCC-hHHHHHHHHHHhhCCCCce
Confidence            35888888865 79999999999999999999999987665543  23568999999999 666665543       269


Q ss_pred             cEEEEcCCCCC-----C---CCCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          137 EAVVCATGFQP-----G---WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       137 d~vi~~ag~~~-----~---~~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      |.++||||..-     +   .+-+..+++|+.|..++.++....   ..+.||+++|..+|-..            ...+
T Consensus        83 d~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpf------------pf~~  150 (289)
T KOG1209|consen   83 DLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPF------------PFGS  150 (289)
T ss_pred             EEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEecc------------chhh
Confidence            99999999632     1   123456899999988877776421   22689999999776422            2347


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .|.++|++..+|.+       .+|++++.+-+|+|.++-.+
T Consensus       151 iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~Ia~  191 (289)
T KOG1209|consen  151 IYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATDIAD  191 (289)
T ss_pred             hhhHHHHHHHHhhhhcEEeeeccccEEEEecccceeccccc
Confidence            79999999998764       47999999999999886543

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.74  E-value=3.3e-17  Score=128.14  Aligned_cols=155  Identities=21%  Similarity=0.164  Sum_probs=115.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh------ccccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT------TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~------~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++||||+|+||.+++++|+++|+ .|+++.|+......      .+.....++.++.+|+++ .+++.+.+..     
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   79 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVAD-RAALAAALAAIPARL   79 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            5799999999999999999999996 68878887543221      111123567889999998 6666655432     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                       ++|.|||++|....        .+++..+++|+.++.++++++++.+.+++|++||....-.            ...+.
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~------------~~~~~  147 (180)
T smart00822       80 GPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLG------------NPGQA  147 (180)
T ss_pred             CCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcC------------CCCch
Confidence             37999999986432        2344568899999999999998878789999998743211            11246


Q ss_pred             HHHHHHHHHHHHHH---HcCCcEEEEeCCccc
Q 025456          206 LTLIAKLQAEQYIR---KSGINYTIIRPGGLR  234 (252)
Q Consensus       206 ~y~~sK~~~e~~~~---~~gi~~~~lrPg~i~  234 (252)
                      .|..+|.+.+.+.+   ..+++++.+.||.+.
T Consensus       148 ~y~~sk~~~~~~~~~~~~~~~~~~~~~~g~~~  179 (180)
T smart00822      148 NYAAANAFLDALAAHRRARGLPATSINWGAWA  179 (180)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCceEEEeecccc
Confidence            78899999888764   468999999998764

It uses NADPH to reduce the keto group to a hydroxy group.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=99.74  E-value=3.5e-17  Score=134.89  Aligned_cols=146  Identities=32%  Similarity=0.415  Sum_probs=107.9

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh-hccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCCC
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQP  147 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~  147 (252)
                      |+|+||||.+|+.+++.|++.+++|+++.|++++.. +.+.  ..+++++.+|+.| .+++.+++.+ +|+||.+.+...
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~--~~g~~vv~~d~~~-~~~l~~al~g-~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQ--ALGAEVVEADYDD-PESLVAALKG-VDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHH--HTTTEEEES-TT--HHHHHHHHTT-CSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhh--cccceEeecccCC-HHHHHHHHcC-CceEEeecCcch
Confidence            799999999999999999999999999999985422 2221  2467899999999 8999999999 999999887543


Q ss_pred             CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCcEEE
Q 025456          148 GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTI  227 (252)
Q Consensus       148 ~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~~~  227 (252)
                              ..-.....+++++|+++|+++||+.|....+...         ....+.......|...|+++++.++++++
T Consensus        77 --------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~---------~~~~p~~~~~~~k~~ie~~l~~~~i~~t~  139 (233)
T PF05368_consen   77 --------PSELEQQKNLIDAAKAAGVKHFVPSSFGADYDES---------SGSEPEIPHFDQKAEIEEYLRESGIPYTI  139 (233)
T ss_dssp             --------CCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTT---------TTSTTHHHHHHHHHHHHHHHHHCTSEBEE
T ss_pred             --------hhhhhhhhhHHHhhhccccceEEEEEeccccccc---------ccccccchhhhhhhhhhhhhhhcccccee
Confidence                    2235567899999999999999864432211100         00111233446799999999999999999


Q ss_pred             EeCCcccC
Q 025456          228 IRPGGLRN  235 (252)
Q Consensus       228 lrPg~i~~  235 (252)
                      ||||.++.
T Consensus       140 i~~g~f~e  147 (233)
T PF05368_consen  140 IRPGFFME  147 (233)
T ss_dssp             EEE-EEHH
T ss_pred             ccccchhh
Confidence            99997654

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.74  E-value=1e-17  Score=130.68  Aligned_cols=140  Identities=18%  Similarity=0.253  Sum_probs=107.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecC--chhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRD--LDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~--~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      |+++||||+++||++++++|+++| +.|+++.|+  .+...+.   ++....++.++++|+++ .+++++.++.      
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSD-PESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTS-HHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            689999999999999999999995 578888888  3333332   22245789999999999 6666655532      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ++|++|||+|.....        ++++.+++|+.+..++.+++...+-++||++||.....            +...+..
T Consensus        80 ~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------~~~~~~~  147 (167)
T PF00106_consen   80 PLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVR------------GSPGMSA  147 (167)
T ss_dssp             SESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTS------------SSTTBHH
T ss_pred             cccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhcc------------CCCCChh
Confidence            499999999976532        34456889999999999999776667999999985321            1233578


Q ss_pred             HHHHHHHHHHHHH
Q 025456          207 TLIAKLQAEQYIR  219 (252)
Q Consensus       207 y~~sK~~~e~~~~  219 (252)
                      |..+|++.+.+.+
T Consensus       148 Y~askaal~~~~~  160 (167)
T PF00106_consen  148 YSASKAALRGLTQ  160 (167)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998775

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.73  E-value=6.2e-17  Score=133.29  Aligned_cols=156  Identities=17%  Similarity=0.246  Sum_probs=109.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH---HcCCCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA---IGDDSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~---~~~~~d~vi~  141 (252)
                      |+|+||||+||||++++++|+++|  +.|....|+....   .  ...++.++++|++| .++++++   +++ +|+|||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~---~--~~~~~~~~~~Dls~-~~~~~~~~~~~~~-id~li~   73 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD---F--QHDNVQWHALDVTD-EAEIKQLSEQFTQ-LDWLIN   73 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc---c--ccCceEEEEecCCC-HHHHHHHHHhcCC-CCEEEE
Confidence            589999999999999999999985  5566555644321   1  23578899999999 6666554   345 999999


Q ss_pred             cCCCCCCC--------------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          142 ATGFQPGW--------------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       142 ~ag~~~~~--------------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |+|.....              ++...+++|+.++..+++.+.    +.+.++++++||..  +.....       +..+
T Consensus        74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~~~~-------~~~~  144 (235)
T PRK09009         74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSISDN-------RLGG  144 (235)
T ss_pred             CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--cccccC-------CCCC
Confidence            99975321              122346889998887777763    33446899998742  111100       1123


Q ss_pred             hhHHHHHHHHHHHHHHH---------cCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIRK---------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~~---------~gi~~~~lrPg~i~~~~~  238 (252)
                      +..|+.+|++.+.+.+.         .+++++.+.||.+.++..
T Consensus       145 ~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~  188 (235)
T PRK09009        145 WYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALS  188 (235)
T ss_pred             cchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCC
Confidence            56799999999876641         379999999999988764

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.73  E-value=2.5e-16  Score=120.93  Aligned_cols=168  Identities=23%  Similarity=0.330  Sum_probs=122.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|.|.||||-+|++|+++++++||+|++++|++.+....     +++.+++.|+.| .+++.+.+.+ .|+||.+.|..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-----~~~~i~q~Difd-~~~~a~~l~g-~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-----QGVTILQKDIFD-LTSLASDLAG-HDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-----ccceeecccccC-hhhhHhhhcC-CceEEEeccCC
Confidence            6899999999999999999999999999999999876532     568899999999 8888999999 99999988765


Q ss_pred             CCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCC-CCCcchhccchhhHHHHHHHHHH--HHHH-HcC
Q 025456          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ-ILNPAYIFLNVFGLTLIAKLQAE--QYIR-KSG  222 (252)
Q Consensus       147 ~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~-~~~~~~~~~~~~~~y~~sK~~~e--~~~~-~~g  222 (252)
                      ...+.    .........+++..+.+++.|++.++..+..--..+. ..+.   |.-|...|..++..+|  +.++ +..
T Consensus        74 ~~~~~----~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~---p~fP~ey~~~A~~~ae~L~~Lr~~~~  146 (211)
T COG2910          74 ASDND----ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDT---PDFPAEYKPEALAQAEFLDSLRAEKS  146 (211)
T ss_pred             CCChh----HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecC---CCCchhHHHHHHHHHHHHHHHhhccC
Confidence            32211    2234457788899999999999999876542211111 1111   1112233445566555  3344 356


Q ss_pred             CcEEEEeCCcccCCC-CCCceEeeccc
Q 025456          223 INYTIIRPGGLRNEP-PTGNIIMETEV  248 (252)
Q Consensus       223 i~~~~lrPg~i~~~~-~~~~~~~~~~~  248 (252)
                      ++|+.+.|..++.|+ .+|+|+++.|.
T Consensus       147 l~WTfvSPaa~f~PGerTg~yrlggD~  173 (211)
T COG2910         147 LDWTFVSPAAFFEPGERTGNYRLGGDQ  173 (211)
T ss_pred             cceEEeCcHHhcCCccccCceEeccce
Confidence            999999999888875 46788887654

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.72  E-value=1.1e-17  Score=127.25  Aligned_cols=165  Identities=15%  Similarity=0.132  Sum_probs=129.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi  140 (252)
                      ++.|+.|+|||+.-+||++++..|++.|.+|+++.|++..+..+......-+.-+.+|+++ .+.+.+.+..  .+|.++
T Consensus         4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~-wea~~~~l~~v~pidgLV   82 (245)
T KOG1207|consen    4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSA-WEALFKLLVPVFPIDGLV   82 (245)
T ss_pred             cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccH-HHHHHHhhcccCchhhhh
Confidence            4568999999999999999999999999999999999988877666444558889999998 7778877765  589999


Q ss_pred             EcCCCCC--------CCCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGFQP--------GWDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~~~--------~~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||||+..        .++.+..|++|+.+..++.+...    ..+ .+.||++||.+...            +......|
T Consensus        83 NNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R------------~~~nHtvY  150 (245)
T KOG1207|consen   83 NNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR------------PLDNHTVY  150 (245)
T ss_pred             ccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc------------ccCCceEE
Confidence            9999743        34677889999999888877743    222 25799999975321            12224667


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~~  240 (252)
                      ..+|++.+.+.+       ..+|+++.+.|..++++++.+
T Consensus       151 catKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~d  190 (245)
T KOG1207|consen  151 CATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRD  190 (245)
T ss_pred             eecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEeccccc
Confidence            888888876554       247999999999999987644

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.71  E-value=1.8e-16  Score=131.72  Aligned_cols=162  Identities=20%  Similarity=0.193  Sum_probs=114.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh--hhhccccCC----CCeEEEEeeCCCChHHHHH-------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTTLSKDN----PSLQIVKADVTEGSAKLSE-------  130 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--~~~~~~~~~----~~~~~i~~Dl~d~~~~~~~-------  130 (252)
                      +++++++||||+++||.++++.|+++|++|+++.|+.+.  .+.......    ..+.+..+|+++..+++..       
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~   82 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE   82 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999998888887553  111111111    3577888999961233333       


Q ss_pred             HHcCCCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCCCCCCcchhc
Q 025456          131 AIGDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       131 ~~~~~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      .+++ +|++|||||....         .+++..+++|+.+...+.+.+...- .++||++||.... ....         
T Consensus        83 ~~g~-id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~---------  151 (251)
T COG1028          83 EFGR-IDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPP---------  151 (251)
T ss_pred             HcCC-CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCC---------
Confidence            3334 9999999997532         2455668999999888888442111 1289999998543 2111         


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        .+..|..+|++.+.+.+       +.|++++.|.||.+.++..
T Consensus       152 --~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~~  194 (251)
T COG1028         152 --GQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMT  194 (251)
T ss_pred             --CcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcch
Confidence              04789999998876543       3689999999998777654

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.70  E-value=4.5e-16  Score=127.16  Aligned_cols=159  Identities=23%  Similarity=0.220  Sum_probs=124.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh----hccc---cCCCCeEEEEeeCCCChHHHHHHHcC-CCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK----TTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-DSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~----~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d  137 (252)
                      +|++||||-||+-|++|++.|+++||+|+++.|+.+...    .+..   ....+++++.+|++| ...+.+++.. ++|
T Consensus         2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD-~~~l~r~l~~v~Pd   80 (345)
T COG1089           2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTD-SSNLLRILEEVQPD   80 (345)
T ss_pred             CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccc-hHHHHHHHHhcCch
Confidence            689999999999999999999999999999999743221    1111   123458999999999 8888888876 689


Q ss_pred             EEEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCC--CEEEEEccceeeccCCCCCCCcchhccchhhHHHHHH
Q 025456          138 AVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGV--NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (252)
Q Consensus       138 ~vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~--~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (252)
                      -|+|+|+...    ..++..+.+++..|+.+++|+++..+.  -||...||...||.....|.++ ..|..|.++|+.+|
T Consensus        81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E-~TPFyPrSPYAvAK  159 (345)
T COG1089          81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKE-TTPFYPRSPYAVAK  159 (345)
T ss_pred             hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCcccc-CCCCCCCCHHHHHH
Confidence            9999998654    346777889999999999999997653  4899999999999876655554 34677889999999


Q ss_pred             HHHHHHH----HHcCCcEE
Q 025456          212 LQAEQYI----RKSGINYT  226 (252)
Q Consensus       212 ~~~e~~~----~~~gi~~~  226 (252)
                      ..+.-..    +.+|+-.+
T Consensus       160 lYa~W~tvNYResYgl~Ac  178 (345)
T COG1089         160 LYAYWITVNYRESYGLFAC  178 (345)
T ss_pred             HHHHheeeehHhhcCceee
Confidence            9887543    34565443

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.66  E-value=1.9e-15  Score=123.39  Aligned_cols=158  Identities=20%  Similarity=0.194  Sum_probs=108.1

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-CCCcEEEEcCCCCC
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-DDSEAVVCATGFQP  147 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-~~~d~vi~~ag~~~  147 (252)
                      |+||||||+||++|+.+|.+.||+|++++|++.+....+.   ..+..        .+.+.+... + +|+|||+||..-
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~---~~v~~--------~~~~~~~~~~~-~DavINLAG~~I   68 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLH---PNVTL--------WEGLADALTLG-IDAVINLAGEPI   68 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcC---ccccc--------cchhhhcccCC-CCEEEECCCCcc
Confidence            6899999999999999999999999999999876654321   12221        122223333 5 999999999654


Q ss_pred             CCC-CC-----CcceehHHHHHHHHHHHHh--cCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHH-H
Q 025456          148 GWD-LF-----APWKVDNFGTVNLVEACRK--RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY-I  218 (252)
Q Consensus       148 ~~~-~~-----~~~~~n~~g~~~ll~~~~~--~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~-~  218 (252)
                      ... |.     ..++.-+..|..++++..+  .+.+.+|.-|.++.||......+.|...+.+.+..-.+..+.-|.+ +
T Consensus        69 ~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~Fla~lc~~WE~~a~~a  148 (297)
T COG1090          69 AERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFLAQLCQDWEEEALQA  148 (297)
T ss_pred             ccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCCCChHHHHHHHHHHHHhhh
Confidence            222 22     3345667789999999874  4556778888888899887777666654444444333333332322 2


Q ss_pred             HHcCCcEEEEeCCcccCCCC
Q 025456          219 RKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       219 ~~~gi~~~~lrPg~i~~~~~  238 (252)
                      +..|.|++++|.|.|.++.+
T Consensus       149 ~~~gtRvvllRtGvVLs~~G  168 (297)
T COG1090         149 QQLGTRVVLLRTGVVLSPDG  168 (297)
T ss_pred             hhcCceEEEEEEEEEecCCC
Confidence            34599999999999888643

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.66  E-value=2.6e-15  Score=124.64  Aligned_cols=171  Identities=19%  Similarity=0.232  Sum_probs=125.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-----CCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      .++++||||+.+||..++.++..+|++|+++.|+..+..+....     ....+.+..+|+.| -+++...+++      
T Consensus        33 ~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~-Y~~v~~~~~~l~~~~~  111 (331)
T KOG1210|consen   33 RRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVID-YDSVSKVIEELRDLEG  111 (331)
T ss_pred             cceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEecccccc-HHHHHHHHhhhhhccC
Confidence            37999999999999999999999999999999998877543321     22336788899988 7777766654      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      .+|.+|+|||..-..        +.+..+++|..|+.+++.++.    +.. .++|+.+||...            ..+.
T Consensus       112 ~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a------------~~~i  179 (331)
T KOG1210|consen  112 PIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLA------------MLGI  179 (331)
T ss_pred             CcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhh------------hcCc
Confidence            489999999975432        233457999999999988873    222 358999998743            1123


Q ss_pred             chhhHHHHHHHHHHHHH-------HHcCCcEEEEeCCcccCCCCCCceEeecccc
Q 025456          202 NVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPTGNIIMETEVR  249 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~-------~~~gi~~~~lrPg~i~~~~~~~~~~~~~~~~  249 (252)
                      ..++.|..+|.+...+.       .++++.++..-|+.+.+|+-.......|+.+
T Consensus       180 ~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t  234 (331)
T KOG1210|consen  180 YGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTKPEET  234 (331)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccCchhe
Confidence            44677777777665433       2369999999999999987555444455544

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.65  E-value=3.4e-15  Score=124.00  Aligned_cols=162  Identities=20%  Similarity=0.215  Sum_probs=121.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCCh---HHHHHHHcC-CC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGS---AKLSEAIGD-DS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~---~~~~~~~~~-~~  136 (252)
                      .+.+++|||||.+||++.+++|+++|.+|++++|+.++++....+    .+-.+.++..|.+++.   +.+.+.+.+ ++
T Consensus        48 ~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V  127 (312)
T KOG1014|consen   48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV  127 (312)
T ss_pred             cCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence            369999999999999999999999999999999999988653322    2356888999999832   235555555 57


Q ss_pred             cEEEEcCCCCCCC----------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          137 EAVVCATGFQPGW----------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       137 d~vi~~ag~~~~~----------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      .++|||+|+..+.          .....+.+|+.++..+.+..    .+.+.+-+|++||.+..            .+..
T Consensus       128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~------------~p~p  195 (312)
T KOG1014|consen  128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL------------IPTP  195 (312)
T ss_pred             EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc------------ccCh
Confidence            7999999986521          23456789999877766654    45566789999997421            1233


Q ss_pred             hhhHHHHHHHHHHHHH-------HHcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~-------~~~gi~~~~lrPg~i~~~~~  238 (252)
                      .++.|.++|...+.+-       +.+||.+=.+-|..|.+++.
T Consensus       196 ~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~  238 (312)
T KOG1014|consen  196 LLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMA  238 (312)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccc
Confidence            4688999999665432       34699999999999998874

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.65  E-value=2.1e-15  Score=128.57  Aligned_cols=164  Identities=19%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             cCCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCc---------hhhh--hcc-ccCCC-----CeEEEEeeCCC
Q 025456           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDL---------DKAK--TTL-SKDNP-----SLQIVKADVTE  123 (252)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~---------~~~~--~~~-~~~~~-----~~~~i~~Dl~d  123 (252)
                      .+++|+++||||+  .+||+++++.|+++|++|++.++.+         +..+  ... .....     ++..+..|+++
T Consensus         5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~   84 (299)
T PRK06300          5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDT   84 (299)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCC
Confidence            3568999999995  9999999999999999999876542         0000  000 00000     01111233322


Q ss_pred             C-----------------hHHHHHH-------HcCCCcEEEEcCCCCC----------CCCCCCcceehHHHHHHHHHHH
Q 025456          124 G-----------------SAKLSEA-------IGDDSEAVVCATGFQP----------GWDLFAPWKVDNFGTVNLVEAC  169 (252)
Q Consensus       124 ~-----------------~~~~~~~-------~~~~~d~vi~~ag~~~----------~~~~~~~~~~n~~g~~~ll~~~  169 (252)
                      .                 ..++.+.       ++ ++|++|||||...          ..+|+..+++|+.|++++++++
T Consensus        85 ~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G-~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~  163 (299)
T PRK06300         85 PEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFG-HIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHF  163 (299)
T ss_pred             CEEeecccCccccccCCCHHHHHHHHHHHHHHcC-CCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            1                 0123322       23 4999999998532          1235566899999999988887


Q ss_pred             Hhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------H-cCCcEEEEeCCcccCCCC
Q 025456          170 RKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       170 ~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~-~gi~~~~lrPg~i~~~~~  238 (252)
                      ...  .-+++|++||.......      +     .....|..+|++.+.+.+       + +||+++.|.||.+.++..
T Consensus       164 ~p~m~~~G~ii~iss~~~~~~~------p-----~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~  231 (299)
T PRK06300        164 GPIMNPGGSTISLTYLASMRAV------P-----GYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAG  231 (299)
T ss_pred             HHHhhcCCeEEEEeehhhcCcC------C-----CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhh
Confidence            431  12589999886432110      1     111369999999887654       2 489999999999988753

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.64  E-value=4.1e-16  Score=129.09  Aligned_cols=151  Identities=21%  Similarity=0.290  Sum_probs=109.3

Q ss_pred             cCC--ChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHH-------H-cCCCcEEE
Q 025456           73 GAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEA-------I-GDDSEAVV  140 (252)
Q Consensus        73 Gat--G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~-------~-~~~~d~vi  140 (252)
                      |++  ++||++++++|+++|++|++++|+.++.++.+..  ...+.+++++|++| +++++++       + +. +|++|
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~g~-iD~lV   78 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSD-EESVEALFDEAVERFGGR-IDILV   78 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTS-HHHHHHHHHHHHHHHCSS-ESEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcc-hHHHHHHHHHHHhhcCCC-eEEEE
Confidence            666  9999999999999999999999998874321111  11224479999999 6555544       4 44 99999


Q ss_pred             EcCCCCCC----C--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          141 CATGFQPG----W--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       141 ~~ag~~~~----~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ||+|....    .        ++...+++|+.+...+++++.+.  .-+++|++||.....            +...+..
T Consensus        79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~------------~~~~~~~  146 (241)
T PF13561_consen   79 NNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR------------PMPGYSA  146 (241)
T ss_dssp             EEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS------------BSTTTHH
T ss_pred             ecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc------------cCccchh
Confidence            99987543    1        23445788888888888877321  115899999874221            1223568


Q ss_pred             HHHHHHHHHHHHH-------H-cCCcEEEEeCCcccCCC
Q 025456          207 TLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~-~gi~~~~lrPg~i~~~~  237 (252)
                      |..+|.+.+.+.+       + +||++++|.||.+.++.
T Consensus       147 y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~  185 (241)
T PF13561_consen  147 YSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPM  185 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccc
Confidence            9999999987764       4 79999999999999864

...

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.63  E-value=1.2e-14  Score=122.17  Aligned_cols=147  Identities=28%  Similarity=0.334  Sum_probs=114.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      ++|+||||||++|++++++|+++|++|+++.|+++......    .++++..+|+.+ .+.+...+.+ +|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~----~~v~~~~~d~~~-~~~l~~a~~G-~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA----GGVEVVLGDLRD-PKSLVAGAKG-VDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc----CCcEEEEeccCC-HhHHHHHhcc-ccEEEEEeccc
Confidence            57999999999999999999999999999999998776543    679999999999 8999999999 99999988765


Q ss_pred             CCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCcEE
Q 025456          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT  226 (252)
Q Consensus       147 ~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~~  226 (252)
                      . .+. ...........+..+.+. .++++++++|......              .....|..+|...|+.+...|++++
T Consensus        75 ~-~~~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~~--------------~~~~~~~~~~~~~e~~l~~sg~~~t  137 (275)
T COG0702          75 D-GSD-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGADA--------------ASPSALARAKAAVEAALRSSGIPYT  137 (275)
T ss_pred             c-ccc-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCCC--------------CCccHHHHHHHHHHHHHHhcCCCeE
Confidence            4 332 233333444444444444 4467888888774221              1236688999999999999999999


Q ss_pred             EEeCCcccCC
Q 025456          227 IIRPGGLRNE  236 (252)
Q Consensus       227 ~lrPg~i~~~  236 (252)
                      ++||..++..
T Consensus       138 ~lr~~~~~~~  147 (275)
T COG0702         138 TLRRAAFYLG  147 (275)
T ss_pred             EEecCeeeec
Confidence            9997665554

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.63  E-value=1.5e-15  Score=125.80  Aligned_cols=148  Identities=16%  Similarity=0.063  Sum_probs=109.3

Q ss_pred             HHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC---CCcEEEEcCCCCCCCCCCCcceeh
Q 025456           82 IVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCATGFQPGWDLFAPWKVD  158 (252)
Q Consensus        82 l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---~~d~vi~~ag~~~~~~~~~~~~~n  158 (252)
                      ++++|+++|++|++++|+.++..        ..+++++|++| .+++.++++.   ++|+||||||.....+++..+++|
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~~--------~~~~~~~Dl~~-~~~v~~~~~~~~~~iD~li~nAG~~~~~~~~~~~~vN   71 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGMT--------LDGFIQADLGD-PASIDAAVAALPGRIDALFNIAGVPGTAPVELVARVN   71 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchhh--------hhHhhcccCCC-HHHHHHHHHHhcCCCeEEEECCCCCCCCCHHHhhhhc
Confidence            47899999999999999876431        13567899999 7777777652   499999999987656777889999


Q ss_pred             HHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCc---------c------hhccchhhHHHHHHHHHHHHHH--
Q 025456          159 NFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNP---------A------YIFLNVFGLTLIAKLQAEQYIR--  219 (252)
Q Consensus       159 ~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~---------~------~~~~~~~~~y~~sK~~~e~~~~--  219 (252)
                      +.++..+++.+...  +.++||++||...|+.....+..+         .      ..+......|+.+|++.+.+.+  
T Consensus        72 ~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~l  151 (241)
T PRK12428         72 FLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALILWTMRQ  151 (241)
T ss_pred             hHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHH
Confidence            99999999998643  236999999998765221100000         0      0123345789999999876542  


Q ss_pred             ------HcCCcEEEEeCCcccCCCC
Q 025456          220 ------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       220 ------~~gi~~~~lrPg~i~~~~~  238 (252)
                            +.|+++++|+||.+.+++.
T Consensus       152 a~~e~~~~girvn~v~PG~v~T~~~  176 (241)
T PRK12428        152 AQPWFGARGIRVNCVAPGPVFTPIL  176 (241)
T ss_pred             HHHhhhccCeEEEEeecCCccCccc
Confidence                  3589999999999999864

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2.8e-15  Score=118.75  Aligned_cols=155  Identities=18%  Similarity=0.157  Sum_probs=120.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~  142 (252)
                      +++|+|||++|.+|++|++.+.++|.  +=+++.-+.                 .+|+++ .++.++.+.. ++..|||+
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk-----------------d~DLt~-~a~t~~lF~~ekPthVIhl   62 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK-----------------DADLTN-LADTRALFESEKPTHVIHL   62 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc-----------------cccccc-hHHHHHHHhccCCceeeeh
Confidence            47999999999999999999999875  222221111                 378999 7888888876 79999999


Q ss_pred             CCCCC-----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchh----ccchhhHHHHHHHH
Q 025456          143 TGFQP-----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI----FLNVFGLTLIAKLQ  213 (252)
Q Consensus       143 ag~~~-----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~----~~~~~~~y~~sK~~  213 (252)
                      |+...     ...+.++++.|+....|++..|-++|++++|+..|.++|.+....|.++...    +....-.|..+|.+
T Consensus        63 AAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~  142 (315)
T KOG1431|consen   63 AAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRM  142 (315)
T ss_pred             HhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHHH
Confidence            86432     2345577889999999999999999999999999999999888888776542    22333457778866


Q ss_pred             HH----HHHHHcCCcEEEEeCCcccCCCC
Q 025456          214 AE----QYIRKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       214 ~e----~~~~~~gi~~~~lrPg~i~~~~~  238 (252)
                      +.    .|..++|..++.+-|++++||..
T Consensus       143 idv~n~aY~~qhg~~~tsviPtNvfGphD  171 (315)
T KOG1431|consen  143 IDVQNQAYRQQHGRDYTSVIPTNVFGPHD  171 (315)
T ss_pred             HHHHHHHHHHHhCCceeeeccccccCCCC
Confidence            54    34457899999999999999864

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.62  E-value=6.2e-15  Score=129.99  Aligned_cols=172  Identities=21%  Similarity=0.234  Sum_probs=120.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCC---CeEEEeecCchhhh------hc------------cccCCCCeEEEEeeC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAK------TT------------LSKDNPSLQIVKADV  121 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~------~~------------~~~~~~~~~~i~~Dl  121 (252)
                      -.++|+|+|||||||+|.-+++.|++.-   -+++++.|.....+      .+            .++...++..+.||+
T Consensus         9 f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi   88 (467)
T KOG1221|consen    9 FYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDI   88 (467)
T ss_pred             HhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccc
Confidence            3568999999999999999999999852   26888888653321      00            011235788899999


Q ss_pred             CCC-----hHHHHHHHcCCCcEEEEcCCCCCCCC-CCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccC---CC
Q 025456          122 TEG-----SAKLSEAIGDDSEAVVCATGFQPGWD-LFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAA---MG  191 (252)
Q Consensus       122 ~d~-----~~~~~~~~~~~~d~vi~~ag~~~~~~-~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~---~~  191 (252)
                      +++     +.+......+ +|+|||+|+.....+ .+....+|..|+.++++.|++.. .+-+|++|++.+.-..   ..
T Consensus        89 ~~~~LGis~~D~~~l~~e-V~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E  167 (467)
T KOG1221|consen   89 SEPDLGISESDLRTLADE-VNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEE  167 (467)
T ss_pred             cCcccCCChHHHHHHHhc-CCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccccccc
Confidence            884     2445545566 999999998766443 33457899999999999998864 5789999998775111   01


Q ss_pred             CCCC------cc------------h-------hccchhhHHHHHHHHHHHHHHH--cCCcEEEEeCCcccC
Q 025456          192 QILN------PA------------Y-------IFLNVFGLTLIAKLQAEQYIRK--SGINYTIIRPGGLRN  235 (252)
Q Consensus       192 ~~~~------~~------------~-------~~~~~~~~y~~sK~~~e~~~~~--~gi~~~~lrPg~i~~  235 (252)
                      .++.      +.            .       ......+.|..+|+.+|+++.+  .+++++|+||+.|..
T Consensus       168 ~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~~lPivIiRPsiI~s  238 (467)
T KOG1221|consen  168 KPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAENLPLVIIRPSIITS  238 (467)
T ss_pred             cccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhccCCCeEEEcCCceec
Confidence            1110      00            0       0012235688999999999865  589999999987654

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.61  E-value=6.4e-15  Score=152.45  Aligned_cols=161  Identities=12%  Similarity=0.041  Sum_probs=120.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchh--------------h--------------------------
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDK--------------A--------------------------  103 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~--------------~--------------------------  103 (252)
                      ++++++||||+++||.+++++|+++ |++|++++|++..              .                          
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            4789999999999999999999998 6999999998210              0                          


Q ss_pred             -------hh---ccccCCCCeEEEEeeCCCChHHHHHHHcC-----CCcEEEEcCCCCCC--------CCCCCcceehHH
Q 025456          104 -------KT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----DSEAVVCATGFQPG--------WDLFAPWKVDNF  160 (252)
Q Consensus       104 -------~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----~~d~vi~~ag~~~~--------~~~~~~~~~n~~  160 (252)
                             .+   .+...+..+.++.+|++| .+++.+++..     ++|+||||||+...        .++...+++|+.
T Consensus      2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD-~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKAAGASAEYASADVTN-SVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred             cchhHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence                   00   001123467889999999 7766665542     49999999997542        245567899999


Q ss_pred             HHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH----H-cCCcEEEEeCCcccC
Q 025456          161 GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR----K-SGINYTIIRPGGLRN  235 (252)
Q Consensus       161 g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~-~gi~~~~lrPg~i~~  235 (252)
                      |++++++++.....++||++||...+-..            .....|+.+|...+.+.+    + .++++++|.||.+.+
T Consensus      2155 G~~~Ll~al~~~~~~~IV~~SSvag~~G~------------~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wdt 2222 (2582)
T TIGR02813      2155 GLLSLLAALNAENIKLLALFSSAAGFYGN------------TGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWDG 2222 (2582)
T ss_pred             HHHHHHHHHHHhCCCeEEEEechhhcCCC------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeecC
Confidence            99999999987776789999998543111            124678999988776553    2 368999999999887


Q ss_pred             CCC
Q 025456          236 EPP  238 (252)
Q Consensus       236 ~~~  238 (252)
                      ++.
T Consensus      2223 gm~ 2225 (2582)
T TIGR02813      2223 GMV 2225 (2582)
T ss_pred             Ccc
Confidence            653

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.58  E-value=1.1e-15  Score=116.30  Aligned_cols=162  Identities=21%  Similarity=0.205  Sum_probs=122.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      .++...+||||.+++|++.+++|+++|..|++++-..++..+..++...++.+..+|++. ++++..++..      ++|
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvts-ekdv~aala~ak~kfgrld   85 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTS-EKDVRAALAKAKAKFGRLD   85 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCc-HHHHHHHHHHHHhhcccee
Confidence            358899999999999999999999999999999988776655444456789999999999 7777766542      599


Q ss_pred             EEEEcCCCCC--------------CCCCCCcceehHHHHHHHHHHHH--------hc-C-CCEEEEEccceeeccCCCCC
Q 025456          138 AVVCATGFQP--------------GWDLFAPWKVDNFGTVNLVEACR--------KR-G-VNRFILISSILVNGAAMGQI  193 (252)
Q Consensus       138 ~vi~~ag~~~--------------~~~~~~~~~~n~~g~~~ll~~~~--------~~-~-~~~~v~~SS~~v~~~~~~~~  193 (252)
                      +.+||||+..              .++....+++|+.|++|+++...        .+ | -+.+|++.|...+....+  
T Consensus        86 ~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~g--  163 (260)
T KOG1199|consen   86 ALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTG--  163 (260)
T ss_pred             eeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCccc--
Confidence            9999999743              13566778999999999988752        11 1 246788888876654333  


Q ss_pred             CCcchhccchhhHHHHHHHHHHH----HHH---HcCCcEEEEeCCcccCCCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQ----YIR---KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~----~~~---~~gi~~~~lrPg~i~~~~~  238 (252)
                                ...|..+|.+.-.    +.+   ..||+++.|.||.+.+|..
T Consensus       164 ----------qaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpll  205 (260)
T KOG1199|consen  164 ----------QAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLL  205 (260)
T ss_pred             ----------hhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhh
Confidence                      3567777775432    223   3589999999999888754

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=99.56  E-value=6.4e-14  Score=107.05  Aligned_cols=157  Identities=23%  Similarity=0.279  Sum_probs=122.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ..++++.++|.||||-.|+.+++++++++  .+|+++.|+....    +.....+.....|... .++....+.+ +|+.
T Consensus        14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d----~at~k~v~q~~vDf~K-l~~~a~~~qg-~dV~   87 (238)
T KOG4039|consen   14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPD----PATDKVVAQVEVDFSK-LSQLATNEQG-PDVL   87 (238)
T ss_pred             HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCC----ccccceeeeEEechHH-HHHHHhhhcC-CceE
Confidence            45679999999999999999999999998  4899999884211    1133567777888877 6777888888 9999


Q ss_pred             EEcCCCCCC-CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHH
Q 025456          140 VCATGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (252)
Q Consensus       140 i~~ag~~~~-~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (252)
                      |.|.|.+.. ...+.+++++......+.+++++.|+++|+.+||.++...              +.-.|...|...|+-+
T Consensus        88 FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~s--------------SrFlY~k~KGEvE~~v  153 (238)
T KOG4039|consen   88 FCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPS--------------SRFLYMKMKGEVERDV  153 (238)
T ss_pred             EEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcc--------------cceeeeeccchhhhhh
Confidence            999987663 2356778999999999999999999999999999854211              1234667788888766


Q ss_pred             HHcCC-cEEEEeCCcccCCCC
Q 025456          219 RKSGI-NYTIIRPGGLRNEPP  238 (252)
Q Consensus       219 ~~~gi-~~~~lrPg~i~~~~~  238 (252)
                      .+.++ +++++|||.+.++..
T Consensus       154 ~eL~F~~~~i~RPG~ll~~R~  174 (238)
T KOG4039|consen  154 IELDFKHIIILRPGPLLGERT  174 (238)
T ss_pred             hhccccEEEEecCcceecccc
Confidence            65443 688999999988654

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.54  E-value=1.8e-13  Score=108.62  Aligned_cols=152  Identities=23%  Similarity=0.247  Sum_probs=103.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCch-hh--h---hccccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD-KA--K---TTLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~-~~--~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++||||.|+||..+++.|+++|. +|+++.|+.. ..  .   +.+......+.++.+|++| .+++.+++..      
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~~~~~~~   80 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTD-PEAVAAALAQLRQRFG   80 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTS-HHHHHHHHHTSHTTSS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccC-HHHHHHHHHHHHhccC
Confidence            689999999999999999999974 7999999832 11  1   1122245679999999999 8888888754      


Q ss_pred             CCcEEEEcCCCCCCCC--------CCCcceehHHHHHHHHHHHHhcCCCEEEEEcccee-eccCCCCCCCcchhccchhh
Q 025456          135 DSEAVVCATGFQPGWD--------LFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV-NGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~~--------~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v-~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +++.|||+||...+..        ....+..-+.|+.++.++........||.+||+.. +|..             ...
T Consensus        81 ~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~-------------gq~  147 (181)
T PF08659_consen   81 PIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGP-------------GQS  147 (181)
T ss_dssp             -EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-T-------------TBH
T ss_pred             CcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCc-------------chH
Confidence            5899999999754321        22334566788999999998888889999999854 2221             246


Q ss_pred             HHHHHHHHHHHHHH---HcCCcEEEEeCCcc
Q 025456          206 LTLIAKLQAEQYIR---KSGINYTIIRPGGL  233 (252)
Q Consensus       206 ~y~~sK~~~e~~~~---~~gi~~~~lrPg~i  233 (252)
                      .|..+....+.+.+   ..|.++.+|.-|..
T Consensus       148 ~YaaAN~~lda~a~~~~~~g~~~~sI~wg~W  178 (181)
T PF08659_consen  148 AYAAANAFLDALARQRRSRGLPAVSINWGAW  178 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSEEEEEEE-EB
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcccc
Confidence            78888887776653   46899998887644

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=99.45  E-value=3.8e-13  Score=107.45  Aligned_cols=165  Identities=15%  Similarity=0.179  Sum_probs=122.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~  142 (252)
                      +..+|+|||+-|.+|..+++.|..+ |.+-++++.-....+..+    ..-.++..|+.| ...+++++-+ ++|.+||.
T Consensus        43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~----~~GPyIy~DILD-~K~L~eIVVn~RIdWL~Hf  117 (366)
T KOG2774|consen   43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVT----DVGPYIYLDILD-QKSLEEIVVNKRIDWLVHF  117 (366)
T ss_pred             CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhc----ccCCchhhhhhc-cccHHHhhcccccceeeeH
Confidence            4689999999999999999988876 765443332111111111    233567889999 7888888755 79999997


Q ss_pred             CCC---CCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHH-
Q 025456          143 TGF---QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-  218 (252)
Q Consensus       143 ag~---~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-  218 (252)
                      .+.   ..+.+.....++|+.|..|+++.+++++. ++..-|+++++|........+....+.+...|+.+|..+|-+- 
T Consensus       118 SALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKVHAEL~GE  196 (366)
T KOG2774|consen  118 SALLSAVGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKVHAELLGE  196 (366)
T ss_pred             HHHHHHhcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCCCCCCeeeecCceeechhHHHHHHHHH
Confidence            543   23456667789999999999999999998 6777899999987765544455556788899999999888543 


Q ss_pred             ---HHcCCcEEEEeCCcccC
Q 025456          219 ---RKSGINYTIIRPGGLRN  235 (252)
Q Consensus       219 ---~~~gi~~~~lrPg~i~~  235 (252)
                         .++|+++.++|...+..
T Consensus       197 y~~hrFg~dfr~~rfPg~is  216 (366)
T KOG2774|consen  197 YFNHRFGVDFRSMRFPGIIS  216 (366)
T ss_pred             HHHhhcCccceecccCcccc
Confidence               35799999999766544

>PRK06720 hypothetical protein; Provisional

Probab=99.43  E-value=2.1e-12  Score=101.11  Aligned_cols=121  Identities=13%  Similarity=0.047  Sum_probs=81.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      .+++++++||||+++||.++++.|+++|++|++++|+.+.....   +........++.+|+++ .+++.+.+.      
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~v~~~~~~~   91 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEK-QGDWQRVISITLNAF   91 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            35689999999999999999999999999999999886654321   11123457788999999 666655432      


Q ss_pred             CCCcEEEEcCCCCCCC----C--CCCcceehHHHHHHHHHHH----Hhc-------CCCEEEEEccce
Q 025456          134 DDSEAVVCATGFQPGW----D--LFAPWKVDNFGTVNLVEAC----RKR-------GVNRFILISSIL  184 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~~----~--~~~~~~~n~~g~~~ll~~~----~~~-------~~~~~v~~SS~~  184 (252)
                      +++|++|||||.....    +  .+..-.+|+.++......+    ++.       +.+||..+||.+
T Consensus        92 G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (169)
T PRK06720         92 SRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKG  159 (169)
T ss_pred             CCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccc
Confidence            1499999999975411    1  0011134555444333333    332       346888888864

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.40  E-value=3.8e-13  Score=106.89  Aligned_cols=161  Identities=17%  Similarity=0.169  Sum_probs=107.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEee--cCchhhhhccccCCCCeEEEEeeCCCChHHHHHHH---c---CCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV--RDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI---G---DDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~---~---~~~  136 (252)
                      +++.++|||+|.+||..++..+.+++.+.....  |.....+.+.....+......+|++. ...+.+..   .   ++.
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~~~~L~v~~gd~~v~~~g~~~e-~~~l~al~e~~r~k~gkr   83 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAELEGLKVAYGDDFVHVVGDITE-EQLLGALREAPRKKGGKR   83 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccccccceEEEecCCcceechHHHH-HHHHHHHHhhhhhcCCce
Confidence            468899999999999999999998876543333  33222211111111223334455554 22222222   1   158


Q ss_pred             cEEEEcCCCCCC-----------CCCCCcceehHHHHHHHHHHH----HhcC-CCEEEEEccceeeccCCCCCCCcchhc
Q 025456          137 EAVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       137 d~vi~~ag~~~~-----------~~~~~~~~~n~~g~~~ll~~~----~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      |.||||||...+           .+|..+|++|+.+...+...+    ++.. .+-+|++||...            ..|
T Consensus        84 ~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aa------------v~p  151 (253)
T KOG1204|consen   84 DIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAA------------VRP  151 (253)
T ss_pred             eEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhh------------hcc
Confidence            999999996431           246678899999977776655    3333 267899999743            234


Q ss_pred             cchhhHHHHHHHHHHHHHH-----H-cCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-----K-SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-----~-~gi~~~~lrPg~i~~~~~  238 (252)
                      .+.|+.|..+|++.+.|.+     + .++++..++||.+.|++.
T Consensus       152 ~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq  195 (253)
T KOG1204|consen  152 FSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQ  195 (253)
T ss_pred             ccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhH
Confidence            5678999999999988764     3 389999999999999874

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=99.38  E-value=7.3e-13  Score=105.33  Aligned_cols=163  Identities=20%  Similarity=0.174  Sum_probs=122.0

Q ss_pred             hcccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        60 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      +..+++-.+.++.|+.||.|.++++.....|+.|.++.|+..  ++.+......+.++.+|... .+-.+..+.+ +..+
T Consensus        46 ~~~dve~e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~--k~~l~sw~~~vswh~gnsfs-sn~~k~~l~g-~t~v  121 (283)
T KOG4288|consen   46 DKQDVEVEWTLVLGGNPFSGSEVLKNATNVVHSVGILSENEN--KQTLSSWPTYVSWHRGNSFS-SNPNKLKLSG-PTFV  121 (283)
T ss_pred             chhhhhHHHHhhhcCCCcchHHHHHHHHhhceeeeEeecccC--cchhhCCCcccchhhccccc-cCcchhhhcC-Cccc
Confidence            334445578999999999999999999999999999999865  33333344678888888766 4445566677 8888


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHH-HH
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQ-YI  218 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~-~~  218 (252)
                      +.++|...  +...+.++|-....+..++++++|+++|+|+|.... |-           +......|..+|.++|. ++
T Consensus       122 ~e~~ggfg--n~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d~-~~-----------~~~i~rGY~~gKR~AE~Ell  187 (283)
T KOG4288|consen  122 YEMMGGFG--NIILMDRINGTANINAVKAAAKAGVPRFVYISAHDF-GL-----------PPLIPRGYIEGKREAEAELL  187 (283)
T ss_pred             HHHhcCcc--chHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhhc-CC-----------CCccchhhhccchHHHHHHH
Confidence            88876432  344566788888999999999999999999996521 10           01112468899999995 45


Q ss_pred             HHcCCcEEEEeCCcccCCCCCC
Q 025456          219 RKSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       219 ~~~gi~~~~lrPg~i~~~~~~~  240 (252)
                      +.++.+-+++|||++|+...-+
T Consensus       188 ~~~~~rgiilRPGFiyg~R~v~  209 (283)
T KOG4288|consen  188 KKFRFRGIILRPGFIYGTRNVG  209 (283)
T ss_pred             HhcCCCceeeccceeecccccC
Confidence            6688999999999999985433

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.6e-11  Score=98.82  Aligned_cols=148  Identities=23%  Similarity=0.249  Sum_probs=114.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-----hhcccc----CCCCeEEEEeeCCCChHHHHHHHcC-C
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-----KTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD-D  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-----~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~-~  135 (252)
                      .|.+||||-||.=|++|++.|+..||+|.++.|+.+.-     +.+...    .........+|++| ...+.+++.. +
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTD-ss~L~k~I~~ik  106 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTD-SSCLIKLISTIK  106 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccc-hHHHHHHHhccC
Confidence            57899999999999999999999999999999976432     223221    23567889999999 8888888876 6


Q ss_pred             CcEEEEcCCCCC---CCC-CCCcceehHHHHHHHHHHHHhcCC---CEEEEEccceeeccCCCCCCCcchhccchhhHHH
Q 025456          136 SEAVVCATGFQP---GWD-LFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (252)
Q Consensus       136 ~d~vi~~ag~~~---~~~-~~~~~~~n~~g~~~ll~~~~~~~~---~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~  208 (252)
                      ++-|+|+|+..+   ..| ++-..+++..|+.+++++.+..+.   -||...|+...||+....|..+ ..|..|.++|+
T Consensus       107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE-~TPFyPRSPYa  185 (376)
T KOG1372|consen  107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSE-TTPFYPRSPYA  185 (376)
T ss_pred             chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCccc-CCCCCCCChhH
Confidence            889999998655   223 334467889999999999987653   2788899999999876655444 34566778999


Q ss_pred             HHHHHHH
Q 025456          209 IAKLQAE  215 (252)
Q Consensus       209 ~sK~~~e  215 (252)
                      ++|..+-
T Consensus       186 ~aKmy~~  192 (376)
T KOG1372|consen  186 AAKMYGY  192 (376)
T ss_pred             Hhhhhhe
Confidence            9998763

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=99.33  E-value=8e-12  Score=100.87  Aligned_cols=169  Identities=18%  Similarity=0.223  Sum_probs=115.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-----eEEEeecCchhhhhccc-------cCCCCeEEEEeeCCCChHHHHHHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-----AVKAGVRDLDKAKTTLS-------KDNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-----~V~~~~r~~~~~~~~~~-------~~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      ..|.++|||++++||.+|+.+|++...     .+++..|+.++.++...       ....+++++.+|+++ ..++.++.
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sN-m~Sv~~A~   80 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSN-MQSVFRAS   80 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhh-HHHHHHHH
Confidence            468999999999999999999998643     47778899887764321       123468899999999 55554443


Q ss_pred             cC------CCcEEEEcCCCCCC-----------------------------------CCCCCcceehHHHHHHHHHHHHh
Q 025456          133 GD------DSEAVVCATGFQPG-----------------------------------WDLFAPWKVDNFGTVNLVEACRK  171 (252)
Q Consensus       133 ~~------~~d~vi~~ag~~~~-----------------------------------~~~~~~~~~n~~g~~~ll~~~~~  171 (252)
                      .+      ++|.|+.|||....                                   ++-.+.++.|+.|.+.+++....
T Consensus        81 ~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~p  160 (341)
T KOG1478|consen   81 KDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEP  160 (341)
T ss_pred             HHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhh
Confidence            32      39999999987541                                   12235579999999888877643


Q ss_pred             c----CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHH-------HHcCCcEEEEeCCcccCCC
Q 025456          172 R----GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       172 ~----~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-------~~~gi~~~~lrPg~i~~~~  237 (252)
                      .    ....+|++||.........   -++....+...+|..||.+.+-+-       ++.|+.-.++.||...+..
T Consensus       161 ll~~~~~~~lvwtSS~~a~kk~ls---leD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~~  234 (341)
T KOG1478|consen  161 LLCHSDNPQLVWTSSRMARKKNLS---LEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTNS  234 (341)
T ss_pred             HhhcCCCCeEEEEeecccccccCC---HHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecch
Confidence            2    2348999999865322211   122222334456778898877432       1347888899999776654

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.23  E-value=7.2e-11  Score=93.07  Aligned_cols=99  Identities=21%  Similarity=0.209  Sum_probs=75.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      |+++||||||++|. +++.|+++|++|++++|+++..+.....  ...++.++.+|++| .+++.+++.+      ++|.
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d-~~sv~~~i~~~l~~~g~id~   78 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHD-DDALKLAIKSTIEKNGPFDL   78 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCCCeE
Confidence            47999999987765 9999999999999999987665443221  23468889999999 7777766643      3677


Q ss_pred             EEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCC----EEEEEc
Q 025456          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN----RFILIS  181 (252)
Q Consensus       139 vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~----~~v~~S  181 (252)
                      +|+.+              +..++.++.++|++.+++    +|+++=
T Consensus        79 lv~~v--------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~  111 (177)
T PRK08309         79 AVAWI--------------HSSAKDALSVVCRELDGSSETYRLFHVL  111 (177)
T ss_pred             EEEec--------------cccchhhHHHHHHHHccCCCCceEEEEe
Confidence            77554              344688999999999998    888864

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=99.15  E-value=1.5e-09  Score=94.31  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=58.3

Q ss_pred             CCcEEEEEcCCChHHHH--HHHHHHHCCCeEEEeecCchh---------------hhhccccCCCCeEEEEeeCCCChHH
Q 025456           65 KQKKIFVAGATGSSGKR--IVEQLLAKGFAVKAGVRDLDK---------------AKTTLSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~--l~~~L~~~G~~V~~~~r~~~~---------------~~~~~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      .+|++|||||++++|.+  +++.| ++|++|+++.+..+.               ..+.....+..+..+.+|+++ .++
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss-~E~  117 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFS-DEI  117 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCC-HHH
Confidence            47999999999999999  89999 999998888753311               111222123346788999999 655


Q ss_pred             HHHHHc------CCCcEEEEcCCCCC
Q 025456          128 LSEAIG------DDSEAVVCATGFQP  147 (252)
Q Consensus       128 ~~~~~~------~~~d~vi~~ag~~~  147 (252)
                      +.+.+.      +++|+||||+|...
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~~  143 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASPR  143 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccCC
Confidence            554443      14999999998654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=99.07  E-value=1.3e-09  Score=94.96  Aligned_cols=98  Identities=24%  Similarity=0.329  Sum_probs=79.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      |++|+|.|| |+||+.+++.|+++| .+|++.+|+.++..+.......+++.++.|+.| .+++.+++.+ .|+|||++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d-~~al~~li~~-~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD-VDALVALIKD-FDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC-hHHHHHHHhc-CCEEEEeCC
Confidence            579999998 999999999999998 899999999888776554344589999999999 8999999999 899999987


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      ...              ...++++|.++|+ .+|=+|
T Consensus        78 ~~~--------------~~~i~ka~i~~gv-~yvDts   99 (389)
T COG1748          78 PFV--------------DLTILKACIKTGV-DYVDTS   99 (389)
T ss_pred             chh--------------hHHHHHHHHHhCC-CEEEcc
Confidence            532              2366777777775 344333

>PTZ00325 malate dehydrogenase; Provisional

Probab=99.05  E-value=1.4e-09  Score=93.40  Aligned_cols=118  Identities=16%  Similarity=0.074  Sum_probs=88.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhh-ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKT-TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~-~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .+|++|.|+|++|.||+.++..|+.++  +++++++++....+. .+.+...  .....+.+| ..++.+.+.+ .|+||
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~--~~~v~~~td-~~~~~~~l~g-aDvVV   81 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDT--PAKVTGYAD-GELWEKALRG-ADLVL   81 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCc--CceEEEecC-CCchHHHhCC-CCEEE
Confidence            358899999999999999999998655  689999883221111 1111111  233446666 4555778899 99999


Q ss_pred             EcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcccee
Q 025456          141 CATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV  185 (252)
Q Consensus       141 ~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v  185 (252)
                      +++|....  .++.+.+..|+..+.++++++++++.+++|+++|.-+
T Consensus        82 itaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv  128 (321)
T PTZ00325         82 ICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV  128 (321)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence            99997543  4566778899999999999999999999999999754

>PLN00106 malate dehydrogenase

Probab=98.89  E-value=1.2e-08  Score=87.78  Aligned_cols=115  Identities=15%  Similarity=0.077  Sum_probs=85.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ..+|.|+|++|.||..++..|+.++  .+++++++++.... .++-.+........++++ .+++.+.+.+ +|+|||+|
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~-a~Dl~~~~~~~~i~~~~~-~~d~~~~l~~-aDiVVitA   94 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV-AADVSHINTPAQVRGFLG-DDQLGDALKG-ADLVIIPA   94 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCee-EchhhhCCcCceEEEEeC-CCCHHHHcCC-CCEEEEeC
Confidence            4799999999999999999998766  47999988762111 111011111222335444 4557788999 99999999


Q ss_pred             CCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          144 GFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       144 g~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |....  .++.+.+..|.....++.+.+++++...+|+++|.
T Consensus        95 G~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSN  136 (323)
T PLN00106         95 GVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISN  136 (323)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            97553  46667788999999999999999998889888885

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=98.89  E-value=4.1e-08  Score=78.59  Aligned_cols=159  Identities=16%  Similarity=0.261  Sum_probs=98.0

Q ss_pred             cCCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .++||+++|+|-..  .|+-.|++.|.++|.++......+ +.++..   ........++++|+++ .+++++.+..   
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~-d~~i~~~f~~i~~   80 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTN-DESIDALFATIKK   80 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCC-HHHHHHHHHHHHH
Confidence            46799999999754  899999999999999998877665 333211   1122235678999999 6666655542   


Q ss_pred             ---CCcEEEEcCCCCCCCCCC-CcceehH--------HHHHHHHHHHHhcC-----CCEEEEEccceeeccCCCCCCCcc
Q 025456          135 ---DSEAVVCATGFQPGWDLF-APWKVDN--------FGTVNLVEACRKRG-----VNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~~~~-~~~~~n~--------~g~~~ll~~~~~~~-----~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                         ++|.|||+.+..+..+.. .++++.-        .++..++..+++..     -+.+|-.+=.   | ..       
T Consensus        81 ~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYl---g-s~-------  149 (259)
T COG0623          81 KWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYL---G-SE-------  149 (259)
T ss_pred             hhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEec---c-ce-------
Confidence               499999999876621100 1111111        12344444444321     2345544321   1 10       


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRN  235 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~  235 (252)
                       .....|+.-+.+|++.|.-+|       +.|+|++.|.-|.|.+
T Consensus       150 -r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrT  193 (259)
T COG0623         150 -RVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRT  193 (259)
T ss_pred             -eecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHH
Confidence             011124566789999986443       3689999999998866

>PRK09620 hypothetical protein; Provisional

Probab=98.83  E-value=1.4e-08  Score=83.26  Aligned_cols=81  Identities=21%  Similarity=0.281  Sum_probs=55.0

Q ss_pred             CCcEEEEEcCC----------------ChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHH
Q 025456           65 KQKKIFVAGAT----------------GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL  128 (252)
Q Consensus        65 ~~~~vlVtGat----------------G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~  128 (252)
                      ++++|+||+|.                ||+|++|+++|+++|++|+++++.......... ....+..+..|... .+.+
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~-~~~~~~~V~s~~d~-~~~l   79 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDIN-NQLELHPFEGIIDL-QDKM   79 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccC-CceeEEEEecHHHH-HHHH
Confidence            58999999886                999999999999999999988764321111111 11223334443322 3567


Q ss_pred             HHHHcC-CCcEEEEcCCCCC
Q 025456          129 SEAIGD-DSEAVVCATGFQP  147 (252)
Q Consensus       129 ~~~~~~-~~d~vi~~ag~~~  147 (252)
                      .+.+.. ++|+|||+|++..
T Consensus        80 ~~~~~~~~~D~VIH~AAvsD   99 (229)
T PRK09620         80 KSIITHEKVDAVIMAAAGSD   99 (229)
T ss_pred             HHHhcccCCCEEEECccccc
Confidence            777752 4899999999754

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.81  E-value=2.7e-08  Score=81.75  Aligned_cols=75  Identities=20%  Similarity=0.273  Sum_probs=52.2

Q ss_pred             EEEEE-cCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC-hHHHHHHHcCCCcEEEEcCCC
Q 025456           68 KIFVA-GATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        68 ~vlVt-GatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      .=.|| .+||++|++|+++|+++|++|+++.|+.....  .  ...+++++.++..+. .+.+.+.+.+ +|+||||||+
T Consensus        17 VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~--~--~~~~v~~i~v~s~~~m~~~l~~~~~~-~DivIh~AAv   91 (229)
T PRK06732         17 VRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKP--E--PHPNLSIIEIENVDDLLETLEPLVKD-HDVLIHSMAV   91 (229)
T ss_pred             ceeecCccchHHHHHHHHHHHhCCCEEEEEECcccccC--C--CCCCeEEEEEecHHHHHHHHHHHhcC-CCEEEeCCcc
Confidence            33445 56788999999999999999999987643211  0  124577777654331 2456666777 9999999998


Q ss_pred             CC
Q 025456          146 QP  147 (252)
Q Consensus       146 ~~  147 (252)
                      ..
T Consensus        92 sd   93 (229)
T PRK06732         92 SD   93 (229)
T ss_pred             CC
Confidence            64

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.80  E-value=4.6e-08  Score=86.62  Aligned_cols=93  Identities=28%  Similarity=0.434  Sum_probs=69.1

Q ss_pred             EEEEcCCChHHHHHHHHHHHCC-C-eEEEeecCchhhhhcccc-CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           69 IFVAGATGSSGKRIVEQLLAKG-F-AVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G-~-~V~~~~r~~~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      |+|.|| |++|+.+++.|++++ . +|++.+|+.++.++.... ...++..+++|+.| .+++.+.+.+ .|+||||+|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~l~~~~~~-~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND-PESLAELLRG-CDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT-HHHHHHHHTT-SSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC-HHHHHHHHhc-CCEEEECCcc
Confidence            789999 999999999999986 4 899999999987766543 45789999999999 8889999999 9999999985


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEE
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~  179 (252)
                      ..              ...++++|.+.|+ ++|-
T Consensus        78 ~~--------------~~~v~~~~i~~g~-~yvD   96 (386)
T PF03435_consen   78 FF--------------GEPVARACIEAGV-HYVD   96 (386)
T ss_dssp             GG--------------HHHHHHHHHHHT--EEEE
T ss_pred             ch--------------hHHHHHHHHHhCC-Ceec
Confidence            41              2355566666554 4444

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.78  E-value=3.4e-08  Score=85.27  Aligned_cols=114  Identities=11%  Similarity=0.039  Sum_probs=75.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC-------CeEEEeecCchh--hhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG-------FAVKAGVRDLDK--AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G-------~~V~~~~r~~~~--~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      .+|+||||+|++|++++..|+..+       ++|+++++++..  .+....+..+-......|+.. ..++.+.+.+ +|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~-~~~~~~~l~~-aD   80 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA-TTDPEEAFKD-VD   80 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee-cCCHHHHhCC-CC
Confidence            579999999999999999998844       589999986532  111000000000011224433 3456678888 99


Q ss_pred             EEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcC-C-CEEEEEcc
Q 025456          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRG-V-NRFILISS  182 (252)
Q Consensus       138 ~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~-~-~~~v~~SS  182 (252)
                      +|||+||....  .+..+.++.|+.-...+.+.++++. . ..+|.+|.
T Consensus        81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            99999998653  3445678899988889988887773 2 34555553

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.73  E-value=7.2e-08  Score=77.22  Aligned_cols=81  Identities=25%  Similarity=0.277  Sum_probs=64.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccC--CCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ++++++++|+||+|++|+.+++.|+++|++|+++.|+.++.+......  ..+..+...|..+ .+++.+.+.+ .|+||
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-~diVi  102 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSD-DAARAAAIKG-ADVVF  102 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC-HHHHHHHHhc-CCEEE
Confidence            346899999999999999999999999999999999987665432211  1245566778888 7888888988 99999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      ++...
T Consensus       103 ~at~~  107 (194)
T cd01078         103 AAGAA  107 (194)
T ss_pred             ECCCC
Confidence            97653

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05086 malate dehydrogenase; Provisional

Probab=98.66  E-value=2e-07  Score=80.08  Aligned_cols=113  Identities=19%  Similarity=0.156  Sum_probs=78.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHH-C--CCeEEEeecCchhhhhccccCC-CCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLA-K--GFAVKAGVRDLDKAKTTLSKDN-PSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~-~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      |+++|+||+|.+|++++..|.. .  ++++++++|++......++-.+ .....+.+  .+ .+++.+.+.+ +|+||.+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~--~~-~~d~~~~l~~-~DiVIit   76 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG--FS-GEDPTPALEG-ADVVLIS   76 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE--eC-CCCHHHHcCC-CCEEEEc
Confidence            6899999999999999988855 2  4578888876432100011011 11122333  22 2345667788 9999999


Q ss_pred             CCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +|....  .+..+.+..|......+++.+++.+.+++|.+.|.
T Consensus        77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN  119 (312)
T PRK05086         77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN  119 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            997543  34456678899999999999999998888888874

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.66  E-value=1.1e-07  Score=84.13  Aligned_cols=77  Identities=12%  Similarity=0.250  Sum_probs=58.3

Q ss_pred             ccCCCcEEEEEcC----------------CChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCCh
Q 025456           62 VSVKQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS  125 (252)
Q Consensus        62 ~~~~~~~vlVtGa----------------tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~  125 (252)
                      ..+++++|+||||                +|++|.+++++|+++|++|++++++.+ ..     ...+  +...|+++ .
T Consensus       184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-----~~~~--~~~~dv~~-~  254 (399)
T PRK05579        184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-----TPAG--VKRIDVES-A  254 (399)
T ss_pred             cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-----CCCC--cEEEccCC-H
Confidence            4578999999999                888999999999999999999988653 11     1112  34578888 6


Q ss_pred             HHHHHHHcC---CCcEEEEcCCCCC
Q 025456          126 AKLSEAIGD---DSEAVVCATGFQP  147 (252)
Q Consensus       126 ~~~~~~~~~---~~d~vi~~ag~~~  147 (252)
                      +++.+.+..   ++|++|||||+..
T Consensus       255 ~~~~~~v~~~~~~~DilI~~Aav~d  279 (399)
T PRK05579        255 QEMLDAVLAALPQADIFIMAAAVAD  279 (399)
T ss_pred             HHHHHHHHHhcCCCCEEEEcccccc
Confidence            555555432   3999999999754

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=98.56  E-value=6e-07  Score=74.77  Aligned_cols=74  Identities=18%  Similarity=0.202  Sum_probs=56.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      |+|+|+||||. |+.|++.|.++|++|++..+.....+....   .+..-+..+..| .+++.+.+.+ ++|+||+++..
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~---~g~~~v~~g~l~-~~~l~~~l~~~~i~~VIDAtHP   75 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI---HQALTVHTGALD-PQELREFLKRHSIDILVDATHP   75 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc---cCCceEEECCCC-HHHHHHHHHhcCCCEEEEcCCH
Confidence            58999999999 999999999999999999988764433221   223334566667 6778788765 59999998754

This enzyme was found to be a monomer by gel filtration.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.45  E-value=9.5e-07  Score=75.18  Aligned_cols=79  Identities=28%  Similarity=0.300  Sum_probs=60.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCc---hhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDL---DKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~---~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      +++++++|+|| |++|++++..|++.|++ |+++.|+.   ++.+++..   .....+.+...|+.+ .+++.+.+.. .
T Consensus       124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~-~~~~~~~~~~-~  200 (289)
T PRK12548        124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLND-TEKLKAEIAS-S  200 (289)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhh-hhHHHhhhcc-C
Confidence            46789999999 89999999999999986 99999986   44433221   122345566788887 6777777877 9


Q ss_pred             cEEEEcCCC
Q 025456          137 EAVVCATGF  145 (252)
Q Consensus       137 d~vi~~ag~  145 (252)
                      |+||||..+
T Consensus       201 DilINaTp~  209 (289)
T PRK12548        201 DILVNATLV  209 (289)
T ss_pred             CEEEEeCCC
Confidence            999998743

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.44  E-value=6.6e-07  Score=76.06  Aligned_cols=79  Identities=29%  Similarity=0.397  Sum_probs=65.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHH----CCCeEEEeecCchhhhhcccc-------CCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLA----KGFAVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~----~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      --++|.|||||-|..++++++.    .|...-+..|++.++.+.+..       ......++.+|..| ++++.+.... 
T Consensus         6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n-~~Sl~emak~-   83 (423)
T KOG2733|consen    6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSAN-EASLDEMAKQ-   83 (423)
T ss_pred             eeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCC-HHHHHHHHhh-
Confidence            4689999999999999999999    688888899999888764431       11233488899999 8999999988 


Q ss_pred             CcEEEEcCCCCC
Q 025456          136 SEAVVCATGFQP  147 (252)
Q Consensus       136 ~d~vi~~ag~~~  147 (252)
                      ..+|+||+|+..
T Consensus        84 ~~vivN~vGPyR   95 (423)
T KOG2733|consen   84 ARVIVNCVGPYR   95 (423)
T ss_pred             hEEEEeccccce
Confidence            999999999754

>cd00704 MDH Malate dehydrogenase

Probab=98.35  E-value=4.7e-06  Score=71.92  Aligned_cols=104  Identities=13%  Similarity=0.156  Sum_probs=73.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecCchhhhhccccCCCCeEEEEeeCCCCh----------HHHHH
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS----------AKLSE  130 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~----------~~~~~  130 (252)
                      +|.|+||+|.+|..++..|+..|.       ++++++++...         +..+....|+.|..          ....+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~---------~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~   72 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM---------KALEGVVMELQDCAFPLLKGVVITTDPEE   72 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc---------CccceeeeehhhhcccccCCcEEecChHH
Confidence            789999999999999999987652       48888886520         12233344444410          34567


Q ss_pred             HHcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcC-CC-EEEEEc
Q 025456          131 AIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG-VN-RFILIS  181 (252)
Q Consensus       131 ~~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~-~~-~~v~~S  181 (252)
                      .+.+ +|+|||+||...  ..+..+.+..|..-.+.+.+.+++.. .. .+|.+|
T Consensus        73 ~~~~-aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          73 AFKD-VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             HhCC-CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            7888 999999999754  23455667889998999999998873 43 455554

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.34  E-value=1.5e-06  Score=74.93  Aligned_cols=74  Identities=22%  Similarity=0.328  Sum_probs=55.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHC-C-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAK-G-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ++++++|+||||+|+||+.++++|+++ | .+++++.|+..+...+..      ++..+|+.    .+.+.+.+ +|+||
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~------el~~~~i~----~l~~~l~~-aDiVv  220 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQA------ELGGGKIL----SLEEALPE-ADIVV  220 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHH------HhccccHH----hHHHHHcc-CCEEE
Confidence            467899999999999999999999865 5 589999998766554321      11123333    35678888 99999


Q ss_pred             EcCCCCC
Q 025456          141 CATGFQP  147 (252)
Q Consensus       141 ~~ag~~~  147 (252)
                      |+++...
T Consensus       221 ~~ts~~~  227 (340)
T PRK14982        221 WVASMPK  227 (340)
T ss_pred             ECCcCCc
Confidence            9998643

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.34  E-value=3.5e-06  Score=74.33  Aligned_cols=103  Identities=13%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             ccCCCcEEEEEcC---------------C-ChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCCh
Q 025456           62 VSVKQKKIFVAGA---------------T-GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS  125 (252)
Q Consensus        62 ~~~~~~~vlVtGa---------------t-G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~  125 (252)
                      ..+++++++||||               | |.+|.+++++|..+|++|+++.++....   .   ...+  ...|+.+ .
T Consensus       181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~---~---~~~~--~~~~v~~-~  251 (390)
T TIGR00521       181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL---T---PPGV--KSIKVST-A  251 (390)
T ss_pred             cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC---C---CCCc--EEEEecc-H
Confidence            3478999999999               3 4599999999999999999988765321   1   1222  4578877 5


Q ss_pred             HHH-HHHHc---CCCcEEEEcCCCCCCCC----------CCCcceehHHHHHHHHHHHHhcC
Q 025456          126 AKL-SEAIG---DDSEAVVCATGFQPGWD----------LFAPWKVDNFGTVNLVEACRKRG  173 (252)
Q Consensus       126 ~~~-~~~~~---~~~d~vi~~ag~~~~~~----------~~~~~~~n~~g~~~ll~~~~~~~  173 (252)
                      +++ .+.++   +++|++|+|||+.....          ....+.+|+.-+..+++..++..
T Consensus       252 ~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~  313 (390)
T TIGR00521       252 EEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK  313 (390)
T ss_pred             HHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence            555 33331   13899999999864211          12234577777778888877644

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.29  E-value=5.7e-06  Score=71.41  Aligned_cols=104  Identities=12%  Similarity=0.071  Sum_probs=73.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecCchhhhhccccCCCCeEEEEeeCCCCh----------HHHHH
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS----------AKLSE  130 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~----------~~~~~  130 (252)
                      +|.|+|++|.+|..++..|+..|.       ++++++++++..         ..+....|+.|..          ....+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~---------~a~g~~~Dl~d~~~~~~~~~~~~~~~~~   71 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK---------VLEGVVMELMDCAFPLLDGVVPTHDPAV   71 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc---------ccceeEeehhcccchhcCceeccCChHH
Confidence            589999999999999999987553       588888765421         1333345555521          13456


Q ss_pred             HHcCCCcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcC-C-CEEEEEc
Q 025456          131 AIGDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRG-V-NRFILIS  181 (252)
Q Consensus       131 ~~~~~~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~-~-~~~v~~S  181 (252)
                      .+.+ +|+||++||....  .++.+.+..|+.-...+.+.++++. . ..+|.+|
T Consensus        72 ~~~~-aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs  125 (324)
T TIGR01758        72 AFTD-VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG  125 (324)
T ss_pred             HhCC-CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            7788 9999999997653  3456677899999999999998873 4 3555555

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.29  E-value=1.2e-05  Score=65.88  Aligned_cols=74  Identities=36%  Similarity=0.529  Sum_probs=61.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag  144 (252)
                      |+++|.|+ |-+|+.+++.|.++|++|++++++++...+... .......+.+|-+| ++.++++ +.+ +|++|-+.|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~-~~~~~~~v~gd~t~-~~~L~~agi~~-aD~vva~t~   75 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLA-DELDTHVVIGDATD-EDVLEEAGIDD-ADAVVAATG   75 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh-hhcceEEEEecCCC-HHHHHhcCCCc-CCEEEEeeC
Confidence            57888997 999999999999999999999999887665332 23568899999999 8888877 555 999997765

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=98.26  E-value=1.8e-06  Score=70.82  Aligned_cols=69  Identities=17%  Similarity=0.266  Sum_probs=46.1

Q ss_pred             EEEEEc-CCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-------HcCCCcEE
Q 025456           68 KIFVAG-ATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGDDSEAV  139 (252)
Q Consensus        68 ~vlVtG-atG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-------~~~~~d~v  139 (252)
                      .=.||. ++|+||++++++|+++|++|+++++... ..   . . .   ...+|+.+ .+++.+.       ++. +|++
T Consensus        16 VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~-l~---~-~-~---~~~~Dv~d-~~s~~~l~~~v~~~~g~-iDiL   84 (227)
T TIGR02114        16 VRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA-LK---P-E-P---HPNLSIRE-IETTKDLLITLKELVQE-HDIL   84 (227)
T ss_pred             ceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh-cc---c-c-c---CCcceeec-HHHHHHHHHHHHHHcCC-CCEE
Confidence            334454 4889999999999999999998876321 11   0 0 1   13467777 4444433       344 9999


Q ss_pred             EEcCCCCC
Q 025456          140 VCATGFQP  147 (252)
Q Consensus       140 i~~ag~~~  147 (252)
                      |||||+..
T Consensus        85 VnnAgv~d   92 (227)
T TIGR02114        85 IHSMAVSD   92 (227)
T ss_pred             EECCEecc
Confidence            99999754

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.20  E-value=3.9e-06  Score=63.19  Aligned_cols=76  Identities=22%  Similarity=0.365  Sum_probs=56.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCchhhhhccccC-CCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKD-NPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~-~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ++++++++|.|+ |+.|+.++..|++.|.+ |+++.|+.++.+++.... ...+.++  ++.+    +.+.+.. .|+||
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~--~~~~----~~~~~~~-~DivI   80 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAI--PLED----LEEALQE-ADIVI   80 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEE--EGGG----HCHHHHT-ESEEE
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcccccee--eHHH----HHHHHhh-CCeEE
Confidence            457899999997 99999999999999975 999999988876654322 2234443  3333    4466777 99999


Q ss_pred             EcCCCC
Q 025456          141 CATGFQ  146 (252)
Q Consensus       141 ~~ag~~  146 (252)
                      ++.+..
T Consensus        81 ~aT~~~   86 (135)
T PF01488_consen   81 NATPSG   86 (135)
T ss_dssp             E-SSTT
T ss_pred             EecCCC
Confidence            998754

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.13  E-value=1.1e-05  Score=69.58  Aligned_cols=157  Identities=11%  Similarity=0.072  Sum_probs=95.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecCchh--hhhcc---ccCC----CCeEEEEeeCCCChHHHHH
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDK--AKTTL---SKDN----PSLQIVKADVTEGSAKLSE  130 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~---~~~~----~~~~~i~~Dl~d~~~~~~~  130 (252)
                      ++|.|+|++|.+|..++-.|+..|.       ++++++...+.  ++...   .+..    .++.+     +.   ...+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-----~~---~~~~   74 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI-----TD---DPNV   74 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE-----ec---CcHH
Confidence            6999999999999999999998774       68888875432  22110   0000    11111     11   1235


Q ss_pred             HHcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCC-C-EEEEEccce---eeccCCCCCCCcchhc-cc
Q 025456          131 AIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-N-RFILISSIL---VNGAAMGQILNPAYIF-LN  202 (252)
Q Consensus       131 ~~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~-~-~~v~~SS~~---v~~~~~~~~~~~~~~~-~~  202 (252)
                      .+.+ .|+||.+||...  ..+..+.+..|..-...+.+.+++.+. . .+|.+|--.   .|--       -...+ ..
T Consensus        75 ~~~d-aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~-------~k~sg~~p  146 (322)
T cd01338          75 AFKD-ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA-------MKNAPDIP  146 (322)
T ss_pred             HhCC-CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH-------HHHcCCCC
Confidence            6777 999999999754  334556678899889999999987762 3 455555310   0000       00000 11


Q ss_pred             hhhHHHHHHHHHHHH----HHHcCCcEEEEeCCcccCCCCC
Q 025456          203 VFGLTLIAKLQAEQY----IRKSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~----~~~~gi~~~~lrPg~i~~~~~~  239 (252)
                      +...|+.++...+++    .+..|++...++...|+|+...
T Consensus       147 ~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~  187 (322)
T cd01338         147 PDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP  187 (322)
T ss_pred             hHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc
Confidence            223444555554433    2457888888888788887754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.12  E-value=1.6e-05  Score=60.27  Aligned_cols=106  Identities=20%  Similarity=0.236  Sum_probs=72.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhcc---cc----CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTL---SK----DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~---~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      ++|.|+|++|.+|++++-.|+..+  .++++++++.+..+...   .+    ......+..   .+     .+.+.+ .|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~-----~~~~~~-aD   71 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GD-----YEALKD-AD   71 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SS-----GGGGTT-ES
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---cc-----cccccc-cc
Confidence            589999999999999999999886  58999999876543211   10    111222222   12     234667 99


Q ss_pred             EEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      +||.++|...  ..+..+.+..|..-...+.+.+++.+.. .++.+|
T Consensus        72 ivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt  118 (141)
T PF00056_consen   72 IVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT  118 (141)
T ss_dssp             EEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred             EEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence            9999999754  3344566788888899999998887643 444443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=98.06  E-value=2e-05  Score=62.45  Aligned_cols=76  Identities=16%  Similarity=0.307  Sum_probs=48.3

Q ss_pred             CCcEEEEEcC----------------CChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC-ChHH
Q 025456           65 KQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-GSAK  127 (252)
Q Consensus        65 ~~~~vlVtGa----------------tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d-~~~~  127 (252)
                      ++++||||+|                ||..|.+|+++++.+|++|+++..... ..     ...++..+.++=.+ ..+.
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~-----~p~~~~~i~v~sa~em~~~   75 (185)
T PF04127_consen    2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LP-----PPPGVKVIRVESAEEMLEA   75 (185)
T ss_dssp             TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SSHHHHHHH
T ss_pred             CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-cc-----ccccceEEEecchhhhhhh
Confidence            4677777765                799999999999999999999887632 11     12467777765332 1245


Q ss_pred             HHHHHcCCCcEEEEcCCCCC
Q 025456          128 LSEAIGDDSEAVVCATGFQP  147 (252)
Q Consensus       128 ~~~~~~~~~d~vi~~ag~~~  147 (252)
                      +.+.+.. .|++|++|++..
T Consensus        76 ~~~~~~~-~Di~I~aAAVsD   94 (185)
T PF04127_consen   76 VKELLPS-ADIIIMAAAVSD   94 (185)
T ss_dssp             HHHHGGG-GSEEEE-SB--S
T ss_pred             hccccCc-ceeEEEecchhh
Confidence            5566666 899999999865

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=98.04  E-value=8.7e-05  Score=64.51  Aligned_cols=108  Identities=22%  Similarity=0.299  Sum_probs=71.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchh---------------------hh---hccccC--CCCe
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK---------------------AK---TTLSKD--NPSL  114 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~---------------------~~---~~~~~~--~~~~  114 (252)
                      ..+++++|+|.|+ |++|.++++.|++.|. ++++++++.-.                     .+   +.+...  .-++
T Consensus        20 ~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i   98 (338)
T PRK12475         20 RKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI   98 (338)
T ss_pred             HhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence            3456789999997 8999999999999997 78888886411                     00   111111  2234


Q ss_pred             EEEEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeec
Q 025456          115 QIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (252)
Q Consensus       115 ~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~  187 (252)
                      +.+..|++.  +.+.+.+.+ +|+||.+..             |...-..+-+.|++.++ .+|+.+..+.+|
T Consensus        99 ~~~~~~~~~--~~~~~~~~~-~DlVid~~D-------------~~~~r~~in~~~~~~~i-p~i~~~~~g~~G  154 (338)
T PRK12475         99 VPVVTDVTV--EELEELVKE-VDLIIDATD-------------NFDTRLLINDLSQKYNI-PWIYGGCVGSYG  154 (338)
T ss_pred             EEEeccCCH--HHHHHHhcC-CCEEEEcCC-------------CHHHHHHHHHHHHHcCC-CEEEEEecccEE
Confidence            556666653  557778888 999998863             22233456677888887 567766554433

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.03  E-value=0.00011  Score=71.92  Aligned_cols=77  Identities=22%  Similarity=0.284  Sum_probs=61.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-Ce-------------EEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FA-------------VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSE  130 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~  130 (252)
                      .+++|+|.|+ |++|+.+++.|++.+ ++             |.+.+++.+..++... ..++++.++.|+.| .+++.+
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~-~~~~~~~v~lDv~D-~e~L~~  644 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE-GIENAEAVQLDVSD-SESLLK  644 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH-hcCCCceEEeecCC-HHHHHH
Confidence            4789999997 999999999998753 33             7777887766654433 22367889999999 888999


Q ss_pred             HHcCCCcEEEEcCCC
Q 025456          131 AIGDDSEAVVCATGF  145 (252)
Q Consensus       131 ~~~~~~d~vi~~ag~  145 (252)
                      .+.+ +|+||++...
T Consensus       645 ~v~~-~DaVIsalP~  658 (1042)
T PLN02819        645 YVSQ-VDVVISLLPA  658 (1042)
T ss_pred             hhcC-CCEEEECCCc
Confidence            9998 9999999864

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.99  E-value=0.00014  Score=63.18  Aligned_cols=108  Identities=23%  Similarity=0.311  Sum_probs=73.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhh---------------------h---hccccCCC--Ce
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKA---------------------K---TTLSKDNP--SL  114 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~---------------------~---~~~~~~~~--~~  114 (252)
                      ..++..+|+|.|+ |++|.++++.|++.|. ++++++++.-..                     +   +.+....+  ++
T Consensus        20 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v   98 (339)
T PRK07688         20 QKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV   98 (339)
T ss_pred             HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence            3456789999998 9999999999999997 888888763110                     0   01111122  34


Q ss_pred             EEEEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeec
Q 025456          115 QIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (252)
Q Consensus       115 ~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~  187 (252)
                      +.+..+++.  +.+.+.+.+ .|+||.+..             |...-..+-++|.+.++ .+|+.++.+.||
T Consensus        99 ~~~~~~~~~--~~~~~~~~~-~DlVid~~D-------------n~~~r~~ln~~~~~~~i-P~i~~~~~g~~G  154 (339)
T PRK07688         99 EAIVQDVTA--EELEELVTG-VDLIIDATD-------------NFETRFIVNDAAQKYGI-PWIYGACVGSYG  154 (339)
T ss_pred             EEEeccCCH--HHHHHHHcC-CCEEEEcCC-------------CHHHHHHHHHHHHHhCC-CEEEEeeeeeee
Confidence            555556643  556777888 999998853             33345567788888886 677877666544

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.98  E-value=3.6e-05  Score=67.90  Aligned_cols=101  Identities=20%  Similarity=0.310  Sum_probs=65.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHH-HHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLS-EAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~-~~~~~~~d~vi~~  142 (252)
                      +.++|.|.||||++|+.+++.|+++ ..+|..+.++....+.... .  ...+...|+.+ .++++ +.+.+ +|+||.+
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~-~--~~~l~~~~~~~-~~~~~~~~~~~-~DvVf~A  111 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS-V--FPHLITQDLPN-LVAVKDADFSD-VDAVFCC  111 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh-h--CccccCccccc-eecCCHHHhcC-CCEEEEc
Confidence            4679999999999999999999998 5789988876543322111 1  11222234432 22222 22567 9999998


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceee
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~  186 (252)
                      .+..              ....++..+ +.+ .++|-.|+..-+
T Consensus       112 lp~~--------------~s~~i~~~~-~~g-~~VIDlSs~fRl  139 (381)
T PLN02968        112 LPHG--------------TTQEIIKAL-PKD-LKIVDLSADFRL  139 (381)
T ss_pred             CCHH--------------HHHHHHHHH-hCC-CEEEEcCchhcc
Confidence            7631              456677776 356 489999987643

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.98  E-value=5.1e-05  Score=68.60  Aligned_cols=75  Identities=25%  Similarity=0.325  Sum_probs=54.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch-hhhhcccc-CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      +++|+|+|+|+++ +|..+++.|+++|++|++.+++.. ..++.... ...+++++..|..+      +...+ +|+||+
T Consensus         3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~-~d~vv~   74 (450)
T PRK14106          3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPE------EFLEG-VDLVVV   74 (450)
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch------hHhhc-CCEEEE
Confidence            4589999999866 999999999999999999998752 22211110 12356777777765      23456 999999


Q ss_pred             cCCCC
Q 025456          142 ATGFQ  146 (252)
Q Consensus       142 ~ag~~  146 (252)
                      ++|..
T Consensus        75 ~~g~~   79 (450)
T PRK14106         75 SPGVP   79 (450)
T ss_pred             CCCCC
Confidence            99874

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=1.9e-05  Score=66.82  Aligned_cols=78  Identities=21%  Similarity=0.253  Sum_probs=61.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      -..++|-||+||.|..++++|+.+|.+-.+..|+..++..+-...++....  .++-+ ++.+.+...+ ..+|+||+|+
T Consensus         6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~--~p~~~-p~~~~~~~~~-~~VVlncvGP   81 (382)
T COG3268           6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAV--FPLGV-PAALEAMASR-TQVVLNCVGP   81 (382)
T ss_pred             ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccc--cCCCC-HHHHHHHHhc-ceEEEecccc
Confidence            367899999999999999999999998888899998877544323333443  34444 7788888888 9999999997


Q ss_pred             CC
Q 025456          146 QP  147 (252)
Q Consensus       146 ~~  147 (252)
                      ..
T Consensus        82 yt   83 (382)
T COG3268          82 YT   83 (382)
T ss_pred             cc
Confidence            54

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.92  E-value=0.0002  Score=57.71  Aligned_cols=107  Identities=19%  Similarity=0.225  Sum_probs=69.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchh-------------------hh---hccccCCCCe--EE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK-------------------AK---TTLSKDNPSL--QI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-------------------~~---~~~~~~~~~~--~~  116 (252)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++++.-.                   .+   +.+....+.+  +.
T Consensus        17 ~kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~   95 (202)
T TIGR02356        17 QRLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA   95 (202)
T ss_pred             HHhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            3456899999996 9999999999999996 78888876211                   00   0111122333  33


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceee
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~  186 (252)
                      +..++.  .+.+.+.+.+ .|+||.+..             |...-..+-+.|++.++ .+|+.+..+.+
T Consensus        96 ~~~~i~--~~~~~~~~~~-~D~Vi~~~d-------------~~~~r~~l~~~~~~~~i-p~i~~~~~g~~  148 (202)
T TIGR02356        96 LKERVT--AENLELLINN-VDLVLDCTD-------------NFATRYLINDACVALGT-PLISAAVVGFG  148 (202)
T ss_pred             ehhcCC--HHHHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEeccCe
Confidence            333443  3556777888 999998863             23334567788888886 57777655443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.90  E-value=0.00015  Score=63.05  Aligned_cols=93  Identities=18%  Similarity=0.192  Sum_probs=58.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +++|+|.||||++|+++++.|.++|+   ++..+.++.+..+.. . . .+.++...|+.+ .     .+.+ +|+||.+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l-~-~-~g~~i~v~d~~~-~-----~~~~-vDvVf~A   70 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL-S-F-KGKELKVEDLTT-F-----DFSG-VDIALFS   70 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee-e-e-CCceeEEeeCCH-H-----HHcC-CCEEEEC
Confidence            46899999999999999999999876   457777665433322 1 1 123344445543 1     2357 9999988


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +|..              .+..+.+...++|+ ++|=.|+.
T Consensus        71 ~g~g--------------~s~~~~~~~~~~G~-~VIDlS~~   96 (334)
T PRK14874         71 AGGS--------------VSKKYAPKAAAAGA-VVIDNSSA   96 (334)
T ss_pred             CChH--------------HHHHHHHHHHhCCC-EEEECCch
Confidence            8632              23445555555665 55555553

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.85  E-value=7.5e-05  Score=64.19  Aligned_cols=110  Identities=13%  Similarity=0.170  Sum_probs=70.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCc--hhhhhccccC-C----CCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDL--DKAKTTLSKD-N----PSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~--~~~~~~~~~~-~----~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      ++|.|+|++|.+|..++..|+..|.  +|++++|+.  ++++...... +    .... .....++  + . +.+.+ .|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~-~~i~~~~--d-~-~~l~~-aD   74 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGID-AEIKISS--D-L-SDVAG-SD   74 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCC-cEEEECC--C-H-HHhCC-CC
Confidence            5899999999999999999999986  599999854  2222111000 0    0011 0122222  1 2 34778 99


Q ss_pred             EEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEcc
Q 025456          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (252)
Q Consensus       138 ~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~SS  182 (252)
                      +||.++|....  .+..+.+..|..-...+.+.+++... .++|.+++
T Consensus        75 iViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n  122 (309)
T cd05294          75 IVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN  122 (309)
T ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            99999997543  23345567788888888888876643 35666665

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.84  E-value=0.0002  Score=64.73  Aligned_cols=73  Identities=22%  Similarity=0.299  Sum_probs=59.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag  144 (252)
                      |+|+|+|+ |.+|+++++.|.++|++|++++++++..+....  ..++.++.+|.++ .+.+.++ +.+ +|.||.+..
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~--~~~~~~~~gd~~~-~~~l~~~~~~~-a~~vi~~~~   74 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD--RLDVRTVVGNGSS-PDVLREAGAED-ADLLIAVTD   74 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh--hcCEEEEEeCCCC-HHHHHHcCCCc-CCEEEEecC
Confidence            47999997 999999999999999999999998876654321  2468899999998 7777777 666 999987754

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.83  E-value=4.9e-05  Score=65.29  Aligned_cols=105  Identities=18%  Similarity=0.217  Sum_probs=71.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccccC-------CCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKD-------NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~-------~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      ++|.|.|+ |++|+.++..|+..|  ++|++++|++++.+....+.       .....+..   .+ .    +.+.+ .|
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~-~----~~l~~-aD   70 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GD-Y----SDCKD-AD   70 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CC-H----HHhCC-CC
Confidence            47899996 999999999999998  58999999887654322110       11222221   12 2    23567 99


Q ss_pred             EEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      +||+++|...  ..+..+.+..|..-...+.+.+++.+.. .++.+|
T Consensus        71 IVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          71 IVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            9999999754  2344566778888888888888877643 455555

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.76  E-value=0.00069  Score=50.86  Aligned_cols=103  Identities=20%  Similarity=0.360  Sum_probs=67.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCC--CeEEEEee
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNP--SLQIVKAD  120 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~--~~~~i~~D  120 (252)
                      .++|+|.|+ |++|+++++.|+..|. ++++++.+.=....                      .+....+  +++.+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            479999997 9999999999999997 68887765311110                      0110112  34455555


Q ss_pred             CCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceee
Q 025456          121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (252)
Q Consensus       121 l~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~  186 (252)
                      +.  .+...+.+++ +|+||.+..             |...-..+.+.|++.+. .+|+.+..+.+
T Consensus        81 ~~--~~~~~~~~~~-~d~vi~~~d-------------~~~~~~~l~~~~~~~~~-p~i~~~~~g~~  129 (135)
T PF00899_consen   81 ID--EENIEELLKD-YDIVIDCVD-------------SLAARLLLNEICREYGI-PFIDAGVNGFY  129 (135)
T ss_dssp             CS--HHHHHHHHHT-SSEEEEESS-------------SHHHHHHHHHHHHHTT--EEEEEEEETTE
T ss_pred             cc--cccccccccC-CCEEEEecC-------------CHHHHHHHHHHHHHcCC-CEEEEEeecCE
Confidence            52  4667777888 999998864             23445677788999886 78887765433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.75  E-value=0.00011  Score=63.20  Aligned_cols=107  Identities=19%  Similarity=0.224  Sum_probs=73.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhcc---ccC---CCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTL---SKD---NPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~---~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      .+++|.|+|+ |.+|..++-.|+..|.  ++.+++++.+..+...   .+.   ..++.+. .  .+     .+.+.+ .
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~-----~~~~~~-a   74 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GD-----YSDCKD-A   74 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CC-----HHHhCC-C
Confidence            5789999998 9999999999998886  7999998776543211   111   1122222 1  11     234678 9


Q ss_pred             cEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          137 EAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       137 d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      |+||.++|...  ..+..+.+..|..-.+.+++.+++.+.. .++.+|
T Consensus        75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            99999999754  2345566788888888888888876643 445544

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.73  E-value=0.0011  Score=48.82  Aligned_cols=94  Identities=19%  Similarity=0.255  Sum_probs=55.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC-CeEEEe-ecCchhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKG-FAVKAG-VRDLDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G-~~V~~~-~r~~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +|.|+||||++|+.+++.|+++. ++++.+ .++.+..+.   ..+..........-| .+ .+    .+.+ +|+||.|
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~-~~----~~~~-~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-AD-PE----ELSD-VDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE-TS-GH----HHTT-ESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee-cc-hh----Hhhc-CCEEEec
Confidence            68999999999999999999974 465544 444422221   111001111222222 23 22    3466 9999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .+-              .....+.+.+.+.|+ ++|=.|+.
T Consensus        74 ~~~--------------~~~~~~~~~~~~~g~-~ViD~s~~   99 (121)
T PF01118_consen   74 LPH--------------GASKELAPKLLKAGI-KVIDLSGD   99 (121)
T ss_dssp             SCH--------------HHHHHHHHHHHHTTS-EEEESSST
T ss_pred             Cch--------------hHHHHHHHHHhhCCc-EEEeCCHH
Confidence            752              234566677777887 66666654

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.71  E-value=0.00076  Score=55.82  Aligned_cols=104  Identities=21%  Similarity=0.247  Sum_probs=65.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc----------------------cccCCCCeEEEEe
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSKDNPSLQIVKA  119 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~----------------------~~~~~~~~~~i~~  119 (252)
                      .+++.+|+|.|+ |++|.++++.|++.|. ++++++.+.-....+                      +....+.+++...
T Consensus        21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            456789999997 9999999999999995 677777653221110                      0011233333332


Q ss_pred             --eCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          120 --DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       120 --Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                        .++  .+.+.+.+.+ .|+||.+..             |...-..+-++|.+.++ .+|+.++.+
T Consensus       100 ~~~i~--~~~~~~~~~~-~DlVvd~~D-------------~~~~r~~ln~~~~~~~i-p~v~~~~~g  149 (240)
T TIGR02355       100 NAKLD--DAELAALIAE-HDIVVDCTD-------------NVEVRNQLNRQCFAAKV-PLVSGAAIR  149 (240)
T ss_pred             eccCC--HHHHHHHhhc-CCEEEEcCC-------------CHHHHHHHHHHHHHcCC-CEEEEEecc
Confidence              232  3456667777 898888764             22334556688888886 566655443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.71  E-value=0.00079  Score=48.90  Aligned_cols=92  Identities=26%  Similarity=0.349  Sum_probs=65.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCCCCC
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATGFQP  147 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag~~~  147 (252)
                      |+|.|. |-+|..+++.|.+.+.+|+++.++++..+....   .++.++.+|.+| .+.++++ +.+ .+.||-+..   
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~---~~~~~i~gd~~~-~~~l~~a~i~~-a~~vv~~~~---   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELRE---EGVEVIYGDATD-PEVLERAGIEK-ADAVVILTD---   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH---TTSEEEES-TTS-HHHHHHTTGGC-ESEEEEESS---
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh---cccccccccchh-hhHHhhcCccc-cCEEEEccC---
Confidence            578887 799999999999977799999999887665443   458899999999 7777765 344 888887654   


Q ss_pred             CCCCCCcceehHHHHHHHHHHHHhcC-CCEEEE
Q 025456          148 GWDLFAPWKVDNFGTVNLVEACRKRG-VNRFIL  179 (252)
Q Consensus       148 ~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~  179 (252)
                                |-.....++..+++.+ ..+++.
T Consensus        72 ----------~d~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   72 ----------DDEENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             ----------SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             ----------CHHHHHHHHHHHHHHCCCCeEEE
Confidence                      1223445666677643 345554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK05442 malate dehydrogenase; Provisional

Probab=97.70  E-value=0.0003  Score=60.79  Aligned_cols=107  Identities=11%  Similarity=0.074  Sum_probs=71.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecCchh--hhhc---cccC----CCCeEEEEeeCCCChHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDK--AKTT---LSKD----NPSLQIVKADVTEGSAKLS  129 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~---~~~~----~~~~~~i~~Dl~d~~~~~~  129 (252)
                      .++|.|+|++|.+|..++-.|+..|.       ++++++.+++.  ++..   +.+.    ..++.+     +   ....
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i-----~---~~~y   75 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI-----T---DDPN   75 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE-----e---cChH
Confidence            57999999999999999999988663       68888875432  2111   0000    011111     1   1123


Q ss_pred             HHHcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcC--CCEEEEEc
Q 025456          130 EAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG--VNRFILIS  181 (252)
Q Consensus       130 ~~~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~S  181 (252)
                      +.+.+ .|+||.+||...  ..+..+.+..|..-...+.+.+++..  -..++.+|
T Consensus        76 ~~~~d-aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  130 (326)
T PRK05442         76 VAFKD-ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG  130 (326)
T ss_pred             HHhCC-CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            56777 999999999644  34555667889988999999998843  34566665

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.69  E-value=0.00056  Score=61.84  Aligned_cols=102  Identities=22%  Similarity=0.371  Sum_probs=71.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~  142 (252)
                      ..+++++|.|+ |.+|+.+++.|.+.|++|++++++++..+.... ...++.++.+|.++ .+.+.++ +.+ .|+||-+
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~-~~~~~~~i~gd~~~-~~~L~~~~~~~-a~~vi~~  304 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAE-ELPNTLVLHGDGTD-QELLEEEGIDE-ADAFIAL  304 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-HCCCCeEEECCCCC-HHHHHhcCCcc-CCEEEEC
Confidence            34689999998 999999999999999999999999876654332 22467889999998 6766544 344 8988865


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      ..-    +     ..|+.    +...+++.+..+++....
T Consensus       305 ~~~----~-----~~n~~----~~~~~~~~~~~~ii~~~~  331 (453)
T PRK09496        305 TND----D-----EANIL----SSLLAKRLGAKKVIALVN  331 (453)
T ss_pred             CCC----c-----HHHHH----HHHHHHHhCCCeEEEEEC
Confidence            431    1     23443    233455556656555443

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.69  E-value=0.00028  Score=61.59  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEE-EeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIV-KADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i-~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      |++|+|+||||++|+.+++.|++. +++++.+.++.+..+.... ....+..+ ..++.+ .+..  ...+ +|+||.|.
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~-~~~~~~~~~~~~~~~-~~~~--~~~~-vD~Vf~al   76 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD-VHPHLRGLVDLVLEP-LDPE--ILAG-ADVVFLAL   76 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH-hCcccccccCceeec-CCHH--HhcC-CCEEEECC
Confidence            589999999999999999999987 6788777664332211110 11112111 122333 2222  3456 99999887


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      ...              ....++..+.++|+ ++|=.|+..
T Consensus        77 P~~--------------~~~~~v~~a~~aG~-~VID~S~~f  102 (343)
T PRK00436         77 PHG--------------VSMDLAPQLLEAGV-KVIDLSADF  102 (343)
T ss_pred             CcH--------------HHHHHHHHHHhCCC-EEEECCccc
Confidence            531              23456666666774 777777654

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=97.67  E-value=6.7e-05  Score=72.63  Aligned_cols=155  Identities=17%  Similarity=0.211  Sum_probs=100.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCchhh--hh----ccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKA--KT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~--~~----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .|.++|+||-|+.|.++++.|..+|.+ +++.+|+.-+.  ..    .....+-++.+-..|++. .....+.+..    
T Consensus      1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt-~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITT-AEGARGLIEESNKL 1846 (2376)
T ss_pred             cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchh-hhhHHHHHHHhhhc
Confidence            589999999999999999999999975 66667764221  11    111123344555566766 4445555543    


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                       .+..|||.|.+-.+        .++.+.-+.-+.||.|+=+..++.-  .+.||..||+..-....+            
T Consensus      1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~G------------ 1914 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAG------------ 1914 (2376)
T ss_pred             ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCc------------
Confidence             37789999876442        2223333444556777766666653  468999999865322222            


Q ss_pred             hhHHHHHHHHHHHHHHH---cCCcEEEEeCCcc
Q 025456          204 FGLTLIAKLQAEQYIRK---SGINYTIIRPGGL  233 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~~---~gi~~~~lrPg~i  233 (252)
                      ..+|+.+..++|++.++   +|++-+.|.=|.|
T Consensus      1915 QtNYG~aNS~MERiceqRr~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1915 QTNYGLANSAMERICEQRRHEGFPGTAIQWGAI 1947 (2376)
T ss_pred             ccccchhhHHHHHHHHHhhhcCCCcceeeeecc
Confidence            36788888899988753   5777777776654

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.67  E-value=0.00027  Score=60.67  Aligned_cols=109  Identities=19%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ++|.|+|++|.+|++++-.|+.+|  .++++++.+  ..+..   +.+......+....  . .+++.+.+.+ .|+||.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~--~-~~~~y~~~~d-aDivvi   74 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYL--G-PEELKKALKG-ADVVVI   74 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEec--C-CCchHHhcCC-CCEEEE
Confidence            489999999999999999998887  478888876  22111   11011111222110  1 1235567888 999999


Q ss_pred             cCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          142 ATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       142 ~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      +||...  ..+..+.++.|..-...+.+..++.+.. .+|.+|
T Consensus        75 taG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt  117 (310)
T cd01337          75 PAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS  117 (310)
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            999754  3455567788998899999988877653 455555

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.64  E-value=0.00018  Score=55.12  Aligned_cols=75  Identities=21%  Similarity=0.311  Sum_probs=51.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .++++++|+|+ |.+|..+++.|++.| ++|++.+|+++..++.......  ..+..+..+    ..+.+.+ +|+||++
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~-~Dvvi~~   88 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE--LGIAIAYLD----LEELLAE-ADLIINT   88 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh--cccceeecc----hhhcccc-CCEEEeC
Confidence            35789999997 999999999999986 7899999988766543321111  112233334    2233666 9999999


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      ....
T Consensus        89 ~~~~   92 (155)
T cd01065          89 TPVG   92 (155)
T ss_pred             cCCC
Confidence            8654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.64  E-value=0.0009  Score=54.97  Aligned_cols=104  Identities=21%  Similarity=0.251  Sum_probs=66.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCC--CeEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNP--SLQIV  117 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~--~~~~i  117 (252)
                      .+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.-....                      .+....+  +++.+
T Consensus        18 ~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          18 KLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            456789999996 9999999999999996 67766554211110                      0111112  34455


Q ss_pred             EeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       118 ~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      ..+++  .+.+.+.+.+ +|+||.|...             ...-..+-+.|++.++ .+|+.+..+
T Consensus        97 ~~~i~--~~~~~~~~~~-~DvVi~~~d~-------------~~~r~~l~~~~~~~~i-p~i~~g~~g  146 (228)
T cd00757          97 NERLD--AENAEELIAG-YDLVLDCTDN-------------FATRYLINDACVKLGK-PLVSGAVLG  146 (228)
T ss_pred             cceeC--HHHHHHHHhC-CCEEEEcCCC-------------HHHHHHHHHHHHHcCC-CEEEEEecc
Confidence            55553  3556777888 9999988642             2234567788888886 566665443

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.62  E-value=0.00089  Score=59.19  Aligned_cols=104  Identities=24%  Similarity=0.286  Sum_probs=66.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc-------------------hhhh---hccccCCCCeE--EE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL-------------------DKAK---TTLSKDNPSLQ--IV  117 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~-------------------~~~~---~~~~~~~~~~~--~i  117 (252)
                      .++..+|+|.|+ |++|.+++..|+..|. ++++++++.                   .+.+   +.+....+.++  .+
T Consensus       132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~  210 (376)
T PRK08762        132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV  210 (376)
T ss_pred             HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            356789999986 9999999999999996 688888762                   1111   11111123333  33


Q ss_pred             EeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       118 ~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      ...+.  .+.+.+.+.+ +|+||++...             ...-..+-++|++.++ .+|+.+..+
T Consensus       211 ~~~~~--~~~~~~~~~~-~D~Vv~~~d~-------------~~~r~~ln~~~~~~~i-p~i~~~~~g  260 (376)
T PRK08762        211 QERVT--SDNVEALLQD-VDVVVDGADN-------------FPTRYLLNDACVKLGK-PLVYGAVFR  260 (376)
T ss_pred             eccCC--hHHHHHHHhC-CCEEEECCCC-------------HHHHHHHHHHHHHcCC-CEEEEEecc
Confidence            33333  3456677777 9999988641             2223456778888886 677765443

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.61  E-value=0.00029  Score=60.81  Aligned_cols=107  Identities=13%  Similarity=0.122  Sum_probs=71.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecCch--hhhhc---cccCC----CCeEEEEeeCCCChHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLD--KAKTT---LSKDN----PSLQIVKADVTEGSAKLS  129 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~~---~~~~~----~~~~~i~~Dl~d~~~~~~  129 (252)
                      -.+|.|+|++|++|+.++-.|+..|.       ++++++....  ..+..   +.+..    .+..+.        ....
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--------~~~~   74 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--------TDPE   74 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--------cChH
Confidence            36899999999999999999998873       7888887542  12211   10000    111111        1123


Q ss_pred             HHHcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCC-C-EEEEEc
Q 025456          130 EAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-N-RFILIS  181 (252)
Q Consensus       130 ~~~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~-~-~~v~~S  181 (252)
                      +.+.+ .|+||.+||...  ..+..+.+..|..-...+.+.+++... . .++.+|
T Consensus        75 ~~~~d-aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        75 EAFKD-VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             HHhCC-CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            56777 999999999754  345556678899989999999988754 3 444554

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.61  E-value=0.00019  Score=60.72  Aligned_cols=75  Identities=24%  Similarity=0.351  Sum_probs=51.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ..++++++|+|+ |++|++++..|++.| .+|+++.|+.++.+++........ .+..++ +    ..+.+.+ .|+|||
T Consensus       120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~-~----~~~~~~~-~DivIn  191 (278)
T PRK00258        120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG-KAELDL-E----LQEELAD-FDLIIN  191 (278)
T ss_pred             CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecc-c----chhcccc-CCEEEE
Confidence            456899999997 999999999999999 789999999877654432111110 011111 1    2234566 999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      +...
T Consensus       192 aTp~  195 (278)
T PRK00258        192 ATSA  195 (278)
T ss_pred             CCcC
Confidence            8754

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.59  E-value=0.0014  Score=54.46  Aligned_cols=104  Identities=20%  Similarity=0.260  Sum_probs=66.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhh----------------------hccccCCCCe--EE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAK----------------------TTLSKDNPSL--QI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~----------------------~~~~~~~~~~--~~  116 (252)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++.+.=...                      +.+....+.+  +.
T Consensus        28 ~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~  106 (245)
T PRK05690         28 EKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET  106 (245)
T ss_pred             HHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence            3456899999998 9999999999999995 6777766421110                      0111112333  33


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +...++  .+.+.+.+.+ +|+||.+..             |...-..+-++|++.++ .+|+.++.
T Consensus       107 ~~~~i~--~~~~~~~~~~-~DiVi~~~D-------------~~~~r~~ln~~~~~~~i-p~v~~~~~  156 (245)
T PRK05690        107 INARLD--DDELAALIAG-HDLVLDCTD-------------NVATRNQLNRACFAAKK-PLVSGAAI  156 (245)
T ss_pred             EeccCC--HHHHHHHHhc-CCEEEecCC-------------CHHHHHHHHHHHHHhCC-EEEEeeec
Confidence            444443  3456677888 999998863             22334457788888886 56665443

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.56  E-value=0.0017  Score=52.11  Aligned_cols=110  Identities=23%  Similarity=0.382  Sum_probs=68.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc------------------------cccCCCC--eE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT------------------------LSKDNPS--LQ  115 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~------------------------~~~~~~~--~~  115 (252)
                      .++..+|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                        +....+.  ++
T Consensus        16 ~L~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~   94 (198)
T cd01485          16 KLRSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLS   94 (198)
T ss_pred             HHhhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEE
Confidence            345789999997 5699999999999996 577777652111100                        1111233  33


Q ss_pred             EEEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeecc
Q 025456          116 IVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA  188 (252)
Q Consensus       116 ~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~  188 (252)
                      .+..++.+..+...+.+.. +|+||.+..             |......+-+.|++.++ .+|+.++.+.+|.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~-~dvVi~~~d-------------~~~~~~~ln~~c~~~~i-p~i~~~~~G~~G~  152 (198)
T cd01485          95 IVEEDSLSNDSNIEEYLQK-FTLVIATEE-------------NYERTAKVNDVCRKHHI-PFISCATYGLIGY  152 (198)
T ss_pred             EEecccccchhhHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEeecCEEE
Confidence            3444443212345556666 888886632             23334567788999987 6888887766654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.56  E-value=0.00067  Score=58.28  Aligned_cols=110  Identities=18%  Similarity=0.167  Sum_probs=71.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhh-ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKT-TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~-~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +|.|+|++|.+|..++-.|+..+.  +++++++++..... .+.+......+....  + .++..+.+.+ .|+||.+||
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~--~-~~~~~~~~~d-aDivvitaG   76 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFS--G-EEGLENALKG-ADVVVIPAG   76 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEec--C-CCchHHHcCC-CCEEEEeCC
Confidence            589999999999999999988874  78888887621111 011011111222101  1 1224567888 999999999


Q ss_pred             CCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          145 FQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       145 ~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      ...  ..+..+.+..|..-...+.+.+++.+.. .+|.+|
T Consensus        77 ~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs  116 (312)
T TIGR01772        77 VPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT  116 (312)
T ss_pred             CCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence            754  3455566788888888888888777643 444444

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.54  E-value=0.002  Score=52.37  Aligned_cols=106  Identities=25%  Similarity=0.315  Sum_probs=66.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc---hhhh------------------hccccCCC--CeEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL---DKAK------------------TTLSKDNP--SLQIVK  118 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~---~~~~------------------~~~~~~~~--~~~~i~  118 (252)
                      .++..+|+|.|+ |++|.++++.|++.|. ++++++.+.   +.+.                  +.+....+  +++.+.
T Consensus        25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~  103 (212)
T PRK08644         25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN  103 (212)
T ss_pred             HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            456789999996 9999999999999996 588887762   1110                  00111112  334444


Q ss_pred             eeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceee
Q 025456          119 ADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVN  186 (252)
Q Consensus       119 ~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~  186 (252)
                      ..+++  +.+.+.+.+ +|+||.|..             |...-..+.+.|.+. ++ .+|+.+....|
T Consensus       104 ~~i~~--~~~~~~~~~-~DvVI~a~D-------------~~~~r~~l~~~~~~~~~~-p~I~~~~~~~~  155 (212)
T PRK08644        104 EKIDE--DNIEELFKD-CDIVVEAFD-------------NAETKAMLVETVLEHPGK-KLVAASGMAGY  155 (212)
T ss_pred             eecCH--HHHHHHHcC-CCEEEECCC-------------CHHHHHHHHHHHHHhCCC-CEEEeehhhcc
Confidence            44543  445667777 899888742             233344566777777 65 57776554433

>PRK08223 hypothetical protein; Validated

Probab=97.53  E-value=0.0014  Score=55.34  Aligned_cols=106  Identities=14%  Similarity=0.251  Sum_probs=66.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCCC--eEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNPS--LQI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~~--~~~  116 (252)
                      ..+++.+|+|.|+ |++|.+++..|+..|. ++.+++.+.=....                      .+....+.  ++.
T Consensus        23 ~kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~  101 (287)
T PRK08223         23 QRLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA  101 (287)
T ss_pred             HHHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence            3456899999997 9999999999999996 67777665211110                      01111233  344


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +...++.  +.+.+.+.+ +|+||.+.-.           .++..-..+-++|++.++ .+|+.+..
T Consensus       102 ~~~~l~~--~n~~~ll~~-~DlVvD~~D~-----------~~~~~r~~ln~~c~~~~i-P~V~~~~~  153 (287)
T PRK08223        102 FPEGIGK--ENADAFLDG-VDVYVDGLDF-----------FEFDARRLVFAACQQRGI-PALTAAPL  153 (287)
T ss_pred             EecccCc--cCHHHHHhC-CCEEEECCCC-----------CcHHHHHHHHHHHHHcCC-CEEEEecc
Confidence            4444543  446677777 8988865421           012334567788899886 56676543

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.53  E-value=0.00051  Score=60.00  Aligned_cols=99  Identities=20%  Similarity=0.247  Sum_probs=58.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC-CCeEEEe-ecCchhhhhccccCCCCeEEE-EeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAG-VRDLDKAKTTLSKDNPSLQIV-KADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~-~r~~~~~~~~~~~~~~~~~~i-~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ++|.|.||||++|..+++.|.++ +.+++.+ +++....+. +....+.+... ..++.+ . +..+...+ +|+||.|.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~-~~~~~~~l~~~~~~~~~~-~-~~~~~~~~-~DvVf~al   76 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP-VSEVHPHLRGLVDLNLEP-I-DEEEIAED-ADVVFLAL   76 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC-hHHhCccccccCCceeec-C-CHHHhhcC-CCEEEECC
Confidence            47999999999999999999987 5677744 443322211 11001111111 112221 1 12334456 99999988


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      +..              ....++..+.++|+ ++|=.|+..
T Consensus        77 P~~--------------~s~~~~~~~~~~G~-~VIDlS~~f  102 (346)
T TIGR01850        77 PHG--------------VSAELAPELLAAGV-KVIDLSADF  102 (346)
T ss_pred             Cch--------------HHHHHHHHHHhCCC-EEEeCChhh
Confidence            632              34566677767774 788888764

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK08328 hypothetical protein; Provisional

Probab=97.51  E-value=0.0017  Score=53.52  Aligned_cols=107  Identities=16%  Similarity=0.198  Sum_probs=66.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc-----------------------cccCCCC--eEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT-----------------------LSKDNPS--LQI  116 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~-----------------------~~~~~~~--~~~  116 (252)
                      .+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                       +....+.  ++.
T Consensus        24 ~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~  102 (231)
T PRK08328         24 KLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET  102 (231)
T ss_pred             HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence            456789999997 9999999999999995 677776542111100                       0001122  333


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeec
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~  187 (252)
                      +...++  ++.+.+.+++ .|+||.+..             |...-..+-++|++.++ .+|+.+..+.+|
T Consensus       103 ~~~~~~--~~~~~~~l~~-~D~Vid~~d-------------~~~~r~~l~~~~~~~~i-p~i~g~~~g~~G  156 (231)
T PRK08328        103 FVGRLS--EENIDEVLKG-VDVIVDCLD-------------NFETRYLLDDYAHKKGI-PLVHGAVEGTYG  156 (231)
T ss_pred             EeccCC--HHHHHHHHhc-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEeeccCEE
Confidence            333443  3446667777 888887763             22233455677888886 577766655444

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=97.50  E-value=0.0026  Score=53.39  Aligned_cols=105  Identities=18%  Similarity=0.204  Sum_probs=65.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhh----------------------ccccCCCCeEEEEe
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKT----------------------TLSKDNPSLQIVKA  119 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~i~~  119 (252)
                      .+++.+|+|.|+ |++|+++++.|++.| -++++++.+.-....                      .+....+.+++...
T Consensus        27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i  105 (268)
T PRK15116         27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV  105 (268)
T ss_pred             HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence            456789999997 999999999999999 578887765211110                      01112233333332


Q ss_pred             e-CCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          120 D-VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       120 D-l~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      + ..+ .+.+.+.+..++|+||.+...             +..-..+.+.|++.++ .+|.++..
T Consensus       106 ~~~i~-~e~~~~ll~~~~D~VIdaiD~-------------~~~k~~L~~~c~~~~i-p~I~~gGa  155 (268)
T PRK15116        106 DDFIT-PDNVAEYMSAGFSYVIDAIDS-------------VRPKAALIAYCRRNKI-PLVTTGGA  155 (268)
T ss_pred             ecccC-hhhHHHHhcCCCCEEEEcCCC-------------HHHHHHHHHHHHHcCC-CEEEECCc
Confidence            2 222 345555554238888887652             2334568888999887 56666554

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.50  E-value=0.0015  Score=57.26  Aligned_cols=38  Identities=29%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchh
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK  102 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~  102 (252)
                      ++++|+|+||||++|+++++.|+++.. +++.+.++...
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~   40 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERS   40 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhh
Confidence            468999999999999999999998764 88877565543

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.49  E-value=0.0018  Score=56.82  Aligned_cols=105  Identities=16%  Similarity=0.145  Sum_probs=67.9

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhh----------------------hccccCCCC--eEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAK----------------------TTLSKDNPS--LQI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~----------------------~~~~~~~~~--~~~  116 (252)
                      ..+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.=...                      +.+....+.  ++.
T Consensus        24 ~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~  102 (355)
T PRK05597         24 QSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV  102 (355)
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence            3456799999997 9999999999999996 6777776531110                      011111233  344


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      +...++.  +...+.+.+ +|+||.+..             |...-..+-++|++.++ .+|+.+..+
T Consensus       103 ~~~~i~~--~~~~~~~~~-~DvVvd~~d-------------~~~~r~~~n~~c~~~~i-p~v~~~~~g  153 (355)
T PRK05597        103 SVRRLTW--SNALDELRD-ADVILDGSD-------------NFDTRHLASWAAARLGI-PHVWASILG  153 (355)
T ss_pred             EEeecCH--HHHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEEec
Confidence            4455543  455667788 999998864             23333456678888886 577765543

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.49  E-value=0.00098  Score=57.89  Aligned_cols=94  Identities=22%  Similarity=0.298  Sum_probs=55.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +++|.|+||||++|+.+++.|.++++   ++..+. +.+...+.+. . .+   ...++.+ .+.. + +.+ +|+||.+
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~aG~~l~-~-~~---~~l~~~~-~~~~-~-~~~-vD~vFla   73 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESAGHSVP-F-AG---KNLRVRE-VDSF-D-FSQ-VQLAFFA   73 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccCCCeec-c-CC---cceEEee-CChH-H-hcC-CCEEEEc
Confidence            57999999999999999999997765   333433 3222221111 1 11   2234433 2211 2 467 9999988


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      .+..              ....+++.+.++|+ ++|=.|+..
T Consensus        74 ~p~~--------------~s~~~v~~~~~~G~-~VIDlS~~f  100 (336)
T PRK05671         74 AGAA--------------VSRSFAEKARAAGC-SVIDLSGAL  100 (336)
T ss_pred             CCHH--------------HHHHHHHHHHHCCC-eEEECchhh
Confidence            7521              13446677777776 566666653

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.45  E-value=0.00056  Score=58.35  Aligned_cols=112  Identities=18%  Similarity=0.190  Sum_probs=71.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccccCCCCeEE--EEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQI--VKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~--i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++|.|+|+ |+||+.++-.|+.++  .+++++++..+..+-...+......+  ....+.. ... .+.+.+ .|+|+-.
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~-aDiVvit   76 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKG-ADIVVIT   76 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcC-CCEEEEe
Confidence            58999999 999999999998875  48999998844332111000000000  0111111 011 345778 9999999


Q ss_pred             CCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          143 TGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       143 ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      ||...  ..+..+.++.|..-...+.+...+.+..-++.+-|
T Consensus        77 AG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt  118 (313)
T COG0039          77 AGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT  118 (313)
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence            98754  34566778899988888988888776544444443

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.45  E-value=0.0046  Score=46.75  Aligned_cols=99  Identities=20%  Similarity=0.290  Sum_probs=63.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhh----------------------hccccCCCC--eEEEEeeCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAK----------------------TTLSKDNPS--LQIVKADVT  122 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~----------------------~~~~~~~~~--~~~i~~Dl~  122 (252)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.-...                      +.+....+.  ++.+..++.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            5889997 9999999999999997 6887776521110                      001111223  334444443


Q ss_pred             CChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          123 EGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       123 d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      +  +...+.+.+ .|+||.+..             |......+.+.|++.++ .++..++.+
T Consensus        80 ~--~~~~~~~~~-~diVi~~~d-------------~~~~~~~l~~~~~~~~i-~~i~~~~~g  124 (143)
T cd01483          80 E--DNLDDFLDG-VDLVIDAID-------------NIAVRRALNRACKELGI-PVIDAGGLG  124 (143)
T ss_pred             h--hhHHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEcCCC
Confidence            3  233566677 999988764             23345678888999886 677777654

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=97.45  E-value=0.01  Score=45.52  Aligned_cols=154  Identities=18%  Similarity=0.174  Sum_probs=84.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeC--CCChHH----HHHHHcC-CCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADV--TEGSAK----LSEAIGD-DSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl--~d~~~~----~~~~~~~-~~d~  138 (252)
                      ..+|+|-||-|-+|+++++.+.+++|-|.-++.......       +.-.++..|-  ++.+++    +.+.+.+ ++|.
T Consensus         3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A-------d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa   75 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA-------DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA   75 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc-------cceEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence            578999999999999999999999998887766543211       1112222221  111222    3334444 7999


Q ss_pred             EEEcCCCCCCCC---------CCCcceehHHHHHHHHHHH-HhcCCCEEEEEccc-eeeccCCCCCCCcchhccchhhHH
Q 025456          139 VVCATGFQPGWD---------LFAPWKVDNFGTVNLVEAC-RKRGVNRFILISSI-LVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       139 vi~~ag~~~~~~---------~~~~~~~n~~g~~~ll~~~-~~~~~~~~v~~SS~-~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||..||.....+         .+.+++-.+....--...+ ...+.+-++..... ...+.            ...+-.|
T Consensus        76 v~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~g------------TPgMIGY  143 (236)
T KOG4022|consen   76 VFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGG------------TPGMIGY  143 (236)
T ss_pred             EEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCC------------CCcccch
Confidence            999887533221         1122222222111111111 12223344444332 22211            2234679


Q ss_pred             HHHHHHHHHHHH-----HcCC----cEEEEeCCcccCCCC
Q 025456          208 LIAKLQAEQYIR-----KSGI----NYTIIRPGGLRNEPP  238 (252)
Q Consensus       208 ~~sK~~~e~~~~-----~~gi----~~~~lrPg~i~~~~~  238 (252)
                      +.+|.+..++.+     +.|+    -+..|-|-.+.+|+.
T Consensus       144 GMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMN  183 (236)
T KOG4022|consen  144 GMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMN  183 (236)
T ss_pred             hHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccc
Confidence            999999998875     2444    366677777777764

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.45  E-value=0.0026  Score=51.34  Aligned_cols=73  Identities=18%  Similarity=0.300  Sum_probs=52.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++++++++|.|| |-+|..-++.|++.|++|++++......-..+. ...+++++..+...      ..+.+ .+.||-+
T Consensus         6 ~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~-~~~~i~~~~~~~~~------~dl~~-~~lVi~a   76 (205)
T TIGR01470         6 NLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELESELTLLA-EQGGITWLARCFDA------DILEG-AFLVIAA   76 (205)
T ss_pred             EcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-HcCCEEEEeCCCCH------HHhCC-cEEEEEC
Confidence            456899999997 999999999999999999998876542221121 22378888877653      23566 8888765


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      .+
T Consensus        77 t~   78 (205)
T TIGR01470        77 TD   78 (205)
T ss_pred             CC
Confidence            44

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.43  E-value=0.00041  Score=58.45  Aligned_cols=72  Identities=18%  Similarity=0.275  Sum_probs=49.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCC--CCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++++++|+|+ |++|++++..|++.|++|++..|+.++.++......  ..+..  .++.+      ....+ +|+||++
T Consensus       116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~--~~~~~------~~~~~-~DivIna  185 (270)
T TIGR00507       116 PNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQA--FSMDE------LPLHR-VDLIINA  185 (270)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEE--echhh------hcccC-ccEEEEC
Confidence            4789999998 899999999999999999999998876654332111  11121  11111      12345 8999999


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      .+..
T Consensus       186 tp~g  189 (270)
T TIGR00507       186 TSAG  189 (270)
T ss_pred             CCCC
Confidence            8754

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.43  E-value=0.00085  Score=57.05  Aligned_cols=71  Identities=21%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+++++|+|. |.+|+.+++.|...|++|++..|++++......   .+...+     + .+.+.+.+.+ .|+||++
T Consensus       148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~---~g~~~~-----~-~~~l~~~l~~-aDiVint  216 (287)
T TIGR02853       148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARITE---MGLIPF-----P-LNKLEEKVAE-IDIVINT  216 (287)
T ss_pred             CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---CCCeee-----c-HHHHHHHhcc-CCEEEEC
Confidence            567899999997 889999999999999999999998765443221   122211     1 3446677777 9999998


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      ..
T Consensus       217 ~P  218 (287)
T TIGR02853       217 IP  218 (287)
T ss_pred             CC
Confidence            64

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.40  E-value=0.0021  Score=55.77  Aligned_cols=100  Identities=17%  Similarity=0.124  Sum_probs=61.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC---ChHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE---GSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d---~~~~~~~~~~~~~d~vi~  141 (252)
                      .+.+|+|+||+|.+|..+++.+...|.+|++++++.++.+......  +++.+ .|..+   ..+.+.+...+.+|+||+
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l--Ga~~v-i~~~~~~~~~~~i~~~~~~gvd~v~d  227 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL--GFDDA-FNYKEEPDLDAALKRYFPNGIDIYFD  227 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--CCcee-EEcCCcccHHHHHHHhCCCCcEEEEE
Confidence            4789999999999999999888888999999888876654332101  12211 23221   012333333223999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +.|..              .....++.++..  ++++.++..
T Consensus       228 ~~g~~--------------~~~~~~~~l~~~--G~iv~~G~~  253 (338)
T cd08295         228 NVGGK--------------MLDAVLLNMNLH--GRIAACGMI  253 (338)
T ss_pred             CCCHH--------------HHHHHHHHhccC--cEEEEeccc
Confidence            87721              123445555544  478877643

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.39  E-value=0.0011  Score=59.84  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=49.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh---hccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      +++++++|+|+++ +|.++++.|++.|++|++.+++.....   +.+.  ..++.+..++.   ...+.  -.+ +|.||
T Consensus         3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~--~~g~~~~~~~~---~~~~~--~~~-~d~vV   73 (447)
T PRK02472          3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELL--EEGIKVICGSH---PLELL--DED-FDLMV   73 (447)
T ss_pred             cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHH--hcCCEEEeCCC---CHHHh--cCc-CCEEE
Confidence            3579999999966 999999999999999999887643211   1111  12445543321   11111  124 89999


Q ss_pred             EcCCCCC
Q 025456          141 CATGFQP  147 (252)
Q Consensus       141 ~~ag~~~  147 (252)
                      .+.|+..
T Consensus        74 ~s~gi~~   80 (447)
T PRK02472         74 KNPGIPY   80 (447)
T ss_pred             ECCCCCC
Confidence            9999764

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=97.39  E-value=0.00071  Score=56.17  Aligned_cols=112  Identities=22%  Similarity=0.194  Sum_probs=68.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEe---ecC-chhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG---VRD-LDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~---~r~-~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .+.+|.|.||+|+||+-|.- |++....|.-+   +-. .......+...+.+..+  ...+- ++++.+++.+ .|+||
T Consensus        27 ~~~KVAvlGAaGGIGQPLSL-LlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V--~g~~g-~~~L~~al~~-advVv  101 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSL-LLKLNPLVSELALYDIANTPGVAADLSHINTNSSV--VGFTG-ADGLENALKG-ADVVV  101 (345)
T ss_pred             CcceEEEEecCCccCccHHH-HHhcCcccceeeeeecccCCcccccccccCCCCce--eccCC-hhHHHHHhcC-CCEEE
Confidence            47899999999999999965 44554433222   111 11111111100111111  11111 5789999999 99999


Q ss_pred             EcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          141 CATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       141 ~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      --||+.+  .-..++.|++|..-...+..++.+...+ .+.++|
T Consensus       102 IPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs  145 (345)
T KOG1494|consen  102 IPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS  145 (345)
T ss_pred             ecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence            9999865  3456678999998889998888766433 344444

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=97.39  E-value=0.0029  Score=54.25  Aligned_cols=102  Identities=18%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc----------------------cccCC--CCeEEEEeeCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSKDN--PSLQIVKADVT  122 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~----------------------~~~~~--~~~~~i~~Dl~  122 (252)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                      +....  -+++.+..++.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            5899997 9999999999999996 677777653221110                      00011  23445555665


Q ss_pred             CChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceee
Q 025456          123 EGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (252)
Q Consensus       123 d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~  186 (252)
                      + .+...+.+.+ +|+||.+..             |...-..+-+.|++.++ .+|..++.+.+
T Consensus        80 ~-~~~~~~f~~~-~DvVv~a~D-------------n~~ar~~in~~c~~~~i-p~I~~gt~G~~  127 (312)
T cd01489          80 D-PDFNVEFFKQ-FDLVFNALD-------------NLAARRHVNKMCLAADV-PLIESGTTGFL  127 (312)
T ss_pred             C-ccchHHHHhc-CCEEEECCC-------------CHHHHHHHHHHHHHCCC-CEEEEecCcce
Confidence            5 3333456677 888887753             34445667788888886 57777665543

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=97.38  E-value=0.0023  Score=55.17  Aligned_cols=99  Identities=15%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC--Ch-HHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GS-AKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d--~~-~~~~~~~~~~~d~vi~  141 (252)
                      .+.+|+|+||+|.+|..+++.+...|.+|++++++.++.+.... .  +++.+ .|..+  .. +.+.+...+.+|+||.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-l--Ga~~v-i~~~~~~~~~~~~~~~~~~gvdvv~d  213 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-L--GFDVA-FNYKTVKSLEETLKKASPDGYDCYFD  213 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--CCCEE-EeccccccHHHHHHHhCCCCeEEEEE
Confidence            47899999999999999998888889999998888766544322 2  22211 22222  01 2222222213999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +.|..              .....++.++..  +++|.++..
T Consensus       214 ~~G~~--------------~~~~~~~~l~~~--G~iv~~G~~  239 (325)
T TIGR02825       214 NVGGE--------------FSNTVIGQMKKF--GRIAICGAI  239 (325)
T ss_pred             CCCHH--------------HHHHHHHHhCcC--cEEEEecch
Confidence            88731              123344544444  478887754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.38  E-value=0.0015  Score=56.97  Aligned_cols=68  Identities=15%  Similarity=0.255  Sum_probs=44.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeE---EEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAV---KAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V---~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +|+|.||||++|+.+++.|.++++.+   ..+.+..+..+...   ..+......|+..      ..+.+ +|+||.++|
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~---~~~~~~~~~~~~~------~~~~~-~D~v~~a~g   70 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT---FKGKELEVNEAKI------ESFEG-IDIALFSAG   70 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee---eCCeeEEEEeCCh------HHhcC-CCEEEECCC
Confidence            58999999999999999999988754   34445543322211   1123444455532      23466 999999887


Q ss_pred             C
Q 025456          145 F  145 (252)
Q Consensus       145 ~  145 (252)
                      .
T Consensus        71 ~   71 (339)
T TIGR01296        71 G   71 (339)
T ss_pred             H
Confidence            3

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=97.37  E-value=0.005  Score=56.55  Aligned_cols=161  Identities=20%  Similarity=0.196  Sum_probs=95.4

Q ss_pred             CCCcEEEEEcCC-ChHHHHHHHHHHHCCCeEEEeecCchhhh-h----cccc---CCCCeEEEEeeCCCC--hHHHHHHH
Q 025456           64 VKQKKIFVAGAT-GSSGKRIVEQLLAKGFAVKAGVRDLDKAK-T----TLSK---DNPSLQIVKADVTEG--SAKLSEAI  132 (252)
Q Consensus        64 ~~~~~vlVtGat-G~iG~~l~~~L~~~G~~V~~~~r~~~~~~-~----~~~~---~~~~~~~i~~Dl~d~--~~~~~~~~  132 (252)
                      ...+.++||||+ |-||..++..|++.|..|++..-+.++.. +    ++..   ....+-++.++....  .+.+.+++
T Consensus       394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewI  473 (866)
T COG4982         394 YGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWI  473 (866)
T ss_pred             cccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHh
Confidence            467999999987 68999999999999999998776544321 1    2211   233456677776541  34455554


Q ss_pred             cC-----------------CCcEEEEcCCCCCCCCC-------CCcceehHHHHHHHHHHHHhcCCC-------EEEEEc
Q 025456          133 GD-----------------DSEAVVCATGFQPGWDL-------FAPWKVDNFGTVNLVEACRKRGVN-------RFILIS  181 (252)
Q Consensus       133 ~~-----------------~~d~vi~~ag~~~~~~~-------~~~~~~n~~g~~~ll~~~~~~~~~-------~~v~~S  181 (252)
                      ..                 .+|.+|-.|++.-..+.       +..+++-++...+++-..++.+..       ++|.-.
T Consensus       474 g~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPg  553 (866)
T COG4982         474 GDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPG  553 (866)
T ss_pred             ccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecC
Confidence            32                 25677766665432221       122456666677777776654421       455555


Q ss_pred             cceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc--------CCcEEEEeCCcccCCC
Q 025456          182 SILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS--------GINYTIIRPGGLRNEP  237 (252)
Q Consensus       182 S~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~--------gi~~~~lrPg~i~~~~  237 (252)
                      |-.             .-....-+.|+.+|.+.|.++.+.        .+.++--+.|++.|.+
T Consensus       554 SPN-------------rG~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG  604 (866)
T COG4982         554 SPN-------------RGMFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG  604 (866)
T ss_pred             CCC-------------CCccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc
Confidence            431             101122377999999999877431        2344445566666543

>PRK04148 hypothetical protein; Provisional

Probab=97.37  E-value=0.0032  Score=47.04  Aligned_cols=94  Identities=19%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +++++++.|. | .|.+++..|.+.|++|++++.++...+....   ..++++.+|+.++.-   ++.++ +|.|+..= 
T Consensus        16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~---~~~~~v~dDlf~p~~---~~y~~-a~liysir-   85 (134)
T PRK04148         16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK---LGLNAFVDDLFNPNL---EIYKN-AKLIYSIR-   85 (134)
T ss_pred             cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH---hCCeEEECcCCCCCH---HHHhc-CCEEEEeC-
Confidence            3588999997 5 8889999999999999999999886654332   357899999998422   34456 88887442 


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEE
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~  180 (252)
                        +.          ..-...+++.+++.++.-+|..
T Consensus        86 --pp----------~el~~~~~~la~~~~~~~~i~~  109 (134)
T PRK04148         86 --PP----------RDLQPFILELAKKINVPLIIKP  109 (134)
T ss_pred             --CC----------HHHHHHHHHHHHHcCCCEEEEc
Confidence              11          2234578899999998655554

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.36  E-value=0.0036  Score=48.56  Aligned_cols=66  Identities=21%  Similarity=0.297  Sum_probs=47.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      |++|.+.|- |-+|+.+++.|++.|++|++.+|++++.+++..   .+++.        .++..++... .|+||-+..
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~g~~~--------~~s~~e~~~~-~dvvi~~v~   66 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE---AGAEV--------ADSPAEAAEQ-ADVVILCVP   66 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH---TTEEE--------ESSHHHHHHH-BSEEEE-SS
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH---hhhhh--------hhhhhhHhhc-ccceEeecc
Confidence            579999996 999999999999999999999999888776553   12211        1234456666 788887754

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=97.35  E-value=0.0031  Score=56.09  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCCC--eEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNPS--LQI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~~--~~~  116 (252)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++.+.=....                      .+....+.  ++.
T Consensus        38 ~~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~  116 (392)
T PRK07878         38 KRLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRL  116 (392)
T ss_pred             HHHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEE
Confidence            3456789999997 9999999999999996 67776654211110                      01111223  333


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeec
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~  187 (252)
                      +...++.  +...+.+.+ +|+||.+..             |...-..+-++|++.++ .+|+.+..+.+|
T Consensus       117 ~~~~i~~--~~~~~~~~~-~D~Vvd~~d-------------~~~~r~~ln~~~~~~~~-p~v~~~~~g~~G  170 (392)
T PRK07878        117 HEFRLDP--SNAVELFSQ-YDLILDGTD-------------NFATRYLVNDAAVLAGK-PYVWGSIYRFEG  170 (392)
T ss_pred             EeccCCh--hHHHHHHhc-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence            4444443  445667777 898887753             23333456678888886 577776655444

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.35  E-value=0.001  Score=57.41  Aligned_cols=113  Identities=21%  Similarity=0.168  Sum_probs=68.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhc-ccc-CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTT-LSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~-~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      +.++|.|+|| |.+|..++..|+..| .++++++++.+..+.. ++. ......-....+.. ..+.+ .+.+ .|+||.
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~-~~d~~-~l~~-ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG-TNNYE-DIKD-SDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe-CCCHH-HhCC-CCEEEE
Confidence            3679999997 999999999998888 6899999876543211 100 00000000011111 12233 6678 999999


Q ss_pred             cCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCE-EEEEc
Q 025456          142 ATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNR-FILIS  181 (252)
Q Consensus       142 ~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~-~v~~S  181 (252)
                      ++|....  .+..+.+..|..-...+.+.+.+...+. ++++|
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvs  122 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVT  122 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9986542  3334455667766677777777665433 55554

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=97.35  E-value=0.0042  Score=51.07  Aligned_cols=104  Identities=23%  Similarity=0.303  Sum_probs=64.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCCC--eEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNPS--LQIV  117 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~~--~~~i  117 (252)
                      .+++.+|+|.|. |++|+++++.|++.|. ++++++.+.=....                      .+....+.  ++.+
T Consensus         8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~   86 (231)
T cd00755           8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV   86 (231)
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            346789999997 9999999999999996 77777765311100                      01111223  3334


Q ss_pred             EeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       118 ~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      ...++  .+...+.+..++|+||.+..             |...-..+.+.|++.++ .+|...+.
T Consensus        87 ~~~i~--~~~~~~l~~~~~D~VvdaiD-------------~~~~k~~L~~~c~~~~i-p~I~s~g~  136 (231)
T cd00755          87 EEFLT--PDNSEDLLGGDPDFVVDAID-------------SIRAKVALIAYCRKRKI-PVISSMGA  136 (231)
T ss_pred             eeecC--HhHHHHHhcCCCCEEEEcCC-------------CHHHHHHHHHHHHHhCC-CEEEEeCC
Confidence            43443  24455555423888888753             23345568889999886 56665444

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.31  E-value=0.00063  Score=57.13  Aligned_cols=110  Identities=19%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             EEEEcCCChHHHHHHHHHHHCC----CeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           69 IFVAGATGSSGKRIVEQLLAKG----FAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      |.|+||+|.+|..++..|+..|    .+|+++++++++++.....  ...... ....+.- .++..+.+.+ .|+||..
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~-~~d~~~~~~~-aDiVv~t   77 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSI-TDDPYEAFKD-ADVVIIT   77 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEE-CCchHHHhCC-CCEEEEC
Confidence            5789999999999999999988    6899999887554321110  000000 1112221 2235667888 9999999


Q ss_pred             CCCCCCC--CCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          143 TGFQPGW--DLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       143 ag~~~~~--~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      +|.....  +......-|+.-.+.+.+.+++.... .++.+|
T Consensus        78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t  119 (263)
T cd00650          78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS  119 (263)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9865432  22234556777777778877766533 444443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=97.30  E-value=0.0029  Score=55.24  Aligned_cols=100  Identities=15%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC---ChHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE---GSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d---~~~~~~~~~~~~~d~vi~  141 (252)
                      .+.+|+|.||+|.+|..+++.+...|.+|++++++.++.+......  +++.+ .|..+   ..+.+.+...+.+|++|.
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l--Ga~~v-i~~~~~~~~~~~i~~~~~~gvD~v~d  234 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL--GFDEA-FNYKEEPDLDAALKRYFPEGIDIYFD  234 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc--CCCEE-EECCCcccHHHHHHHHCCCCcEEEEE
Confidence            4789999999999999999888888999998888776654322111  12211 23222   012333332223999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +.|..              .....++.++..  ++++.++..
T Consensus       235 ~vG~~--------------~~~~~~~~l~~~--G~iv~~G~~  260 (348)
T PLN03154        235 NVGGD--------------MLDAALLNMKIH--GRIAVCGMV  260 (348)
T ss_pred             CCCHH--------------HHHHHHHHhccC--CEEEEECcc
Confidence            98721              123344444444  478877653

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.30  E-value=0.0012  Score=51.51  Aligned_cols=57  Identities=25%  Similarity=0.350  Sum_probs=45.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++.+++++|+|+++.+|..+++.|.++|.+|+++.|+.+                         ++.+.+.+ .|+||.+
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~-------------------------~l~~~l~~-aDiVIsa   94 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK-------------------------NLKEHTKQ-ADIVIVA   94 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch-------------------------hHHHHHhh-CCEEEEc
Confidence            467999999999767899999999999999998887531                         24456666 8888887


Q ss_pred             CCC
Q 025456          143 TGF  145 (252)
Q Consensus       143 ag~  145 (252)
                      .+.
T Consensus        95 t~~   97 (168)
T cd01080          95 VGK   97 (168)
T ss_pred             CCC
Confidence            764

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.30  E-value=0.00091  Score=56.77  Aligned_cols=78  Identities=17%  Similarity=0.129  Sum_probs=53.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .++++++|.|+ |+.|++++..|++.|. +|+++.|+.++.+.+.........+..  +.. .+++.+.+.+ .|+|||+
T Consensus       123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~--~~~-~~~~~~~~~~-~DiVIna  197 (282)
T TIGR01809       123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITR--LEG-DSGGLAIEKA-AEVLVST  197 (282)
T ss_pred             cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCccee--ccc-hhhhhhcccC-CCEEEEC
Confidence            46789999996 9999999999999996 799999998877654432111111111  111 1233445566 9999999


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      ....
T Consensus       198 Tp~g  201 (282)
T TIGR01809       198 VPAD  201 (282)
T ss_pred             CCCC
Confidence            7654

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.30  E-value=0.00054  Score=58.20  Aligned_cols=72  Identities=21%  Similarity=0.288  Sum_probs=50.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccC---CCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKD---NPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ..+++|+|.|+ |+.|++++..|++.|. +|++++|+.++.+.+....   .....+..  .    +++.+.+.+ .|+|
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~--~----~~~~~~~~~-aDiV  196 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATA--G----SDLAAALAA-ADGL  196 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEe--c----cchHhhhCC-CCEE
Confidence            45789999997 8999999999999997 7999999987766543211   11222211  1    223445667 9999


Q ss_pred             EEcC
Q 025456          140 VCAT  143 (252)
Q Consensus       140 i~~a  143 (252)
                      ||+.
T Consensus       197 InaT  200 (284)
T PRK12549        197 VHAT  200 (284)
T ss_pred             EECC
Confidence            9994

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=97.29  E-value=0.0045  Score=50.98  Aligned_cols=100  Identities=15%  Similarity=0.090  Sum_probs=62.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc----------------------cccCC--CCeEEEEeeCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSKDN--PSLQIVKADVT  122 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~----------------------~~~~~--~~~~~i~~Dl~  122 (252)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.=....+                      +....  -+++.+..++.
T Consensus         1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            4789985 9999999999999996 677777653111100                      00011  23444555564


Q ss_pred             CChHH-HHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          123 EGSAK-LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       123 d~~~~-~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      + ... -.+.+.+ +|+||.+..             |...-..+-+.|.+.++ .+|..++.+
T Consensus        80 ~-~~~~~~~f~~~-~DvVi~a~D-------------n~~aR~~ln~~c~~~~i-plI~~g~~G  126 (234)
T cd01484          80 P-EQDFNDTFFEQ-FHIIVNALD-------------NIIARRYVNGMLIFLIV-PLIESGTEG  126 (234)
T ss_pred             h-hhhchHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEcccC
Confidence            4 222 2345666 888887753             34455667788888876 577766654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=97.29  E-value=0.0036  Score=55.14  Aligned_cols=104  Identities=14%  Similarity=0.234  Sum_probs=67.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCC--CeEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNP--SLQI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~--~~~~  116 (252)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++.+.=....                      .+....+  +++.
T Consensus        37 ~~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~  115 (370)
T PRK05600         37 ERLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA  115 (370)
T ss_pred             HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence            4456889999997 9999999999999995 78887776211100                      0111122  3444


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +...++  .+.+.+.+.+ +|+||.|..             |...-..+-++|++.++ .+|+.+..
T Consensus       116 ~~~~i~--~~~~~~~~~~-~DlVid~~D-------------n~~~r~~in~~~~~~~i-P~v~~~~~  165 (370)
T PRK05600        116 LRERLT--AENAVELLNG-VDLVLDGSD-------------SFATKFLVADAAEITGT-PLVWGTVL  165 (370)
T ss_pred             eeeecC--HHHHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEEe
Confidence            444554  3456677888 999998864             23334456677888886 46666543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.28  E-value=0.0026  Score=47.03  Aligned_cols=93  Identities=20%  Similarity=0.328  Sum_probs=55.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHH-CCCeEEEe-ecCchhhh-hccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLA-KGFAVKAG-VRDLDKAK-TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~-~r~~~~~~-~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ++|+|.|++|.+|+.+++.+.+ .+.++... +|+++... +..... .+..  ...+.- .+++.+.+.. +|++|.+.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~-~~~~--~~~~~v-~~~l~~~~~~-~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGEL-AGIG--PLGVPV-TDDLEELLEE-ADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHH-CTSS--T-SSBE-BS-HHHHTTH--SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhh-hCcC--Cccccc-chhHHHhccc-CCEEEEcC
Confidence            5899999999999999999999 57886655 45442111 111000 0000  011111 2456777777 99999875


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEE
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~  179 (252)
                      .              -.++...++.|.++++ .+|.
T Consensus        76 ~--------------p~~~~~~~~~~~~~g~-~~Vi   96 (124)
T PF01113_consen   76 N--------------PDAVYDNLEYALKHGV-PLVI   96 (124)
T ss_dssp             ---------------HHHHHHHHHHHHHHT--EEEE
T ss_pred             C--------------hHHhHHHHHHHHhCCC-CEEE
Confidence            2              3456778888888886 4433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.28  E-value=0.0013  Score=56.57  Aligned_cols=112  Identities=18%  Similarity=0.165  Sum_probs=66.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      |++|.|+|+ |.+|..++..++..|. +|++++++++..+.....  ...........++. ..+. +.+.+ .|+||.+
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~-~~d~-~~~~~-aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG-TNDY-EDIAG-SDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe-CCCH-HHHCC-CCEEEEC
Confidence            579999998 9999999999998875 899999977654321110  00000000011111 1112 34677 9999999


Q ss_pred             CCCCCCCC--CCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          143 TGFQPGWD--LFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       143 ag~~~~~~--~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      +|.....+  ..+.+.-|+.-...+++.+++...+ .+|.++
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t  119 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT  119 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            98654222  2233445666667777777665433 455554

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.28  E-value=0.0032  Score=54.02  Aligned_cols=97  Identities=23%  Similarity=0.290  Sum_probs=61.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+++|+||+|.+|.++++.+...|.+|+++.+++++.+.. ..... -.++  |..+..+.+.+. .+ +|+|++++|
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~~~-~~~~--~~~~~~~~~~~~-~~-~d~v~~~~g  235 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL-KELGA-DYVI--DGSKFSEDVKKL-GG-ADVVIELVG  235 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHcCC-cEEE--ecHHHHHHHHhc-cC-CCEEEECCC
Confidence            468999999999999999999999999999998877654432 11111 1112  221101223322 35 999999987


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      ..              ....+++.++..  +++|.++..
T Consensus       236 ~~--------------~~~~~~~~~~~~--g~~v~~g~~  258 (332)
T cd08259         236 SP--------------TIEESLRSLNKG--GRLVLIGNV  258 (332)
T ss_pred             hH--------------HHHHHHHHhhcC--CEEEEEcCC
Confidence            32              122344444433  478887764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=97.27  E-value=0.0058  Score=50.78  Aligned_cols=73  Identities=15%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag  144 (252)
                      +++|+|.||| .=|+.|++.|.++|++|++..-.....    . ....+.++.+-+.+ .+.+.+.+.+ ++++||.+..
T Consensus         2 ~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~----~-~~~~~~v~~G~l~~-~~~l~~~l~~~~i~~VIDATH   74 (248)
T PRK08057          2 MPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGG----P-ADLPGPVRVGGFGG-AEGLAAYLREEGIDLVIDATH   74 (248)
T ss_pred             CceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCC----c-ccCCceEEECCCCC-HHHHHHHHHHCCCCEEEECCC
Confidence            6789999998 679999999999999887765544222    1 22456777787767 7889988875 5999998765


Q ss_pred             C
Q 025456          145 F  145 (252)
Q Consensus       145 ~  145 (252)
                      +
T Consensus        75 P   75 (248)
T PRK08057         75 P   75 (248)
T ss_pred             c
Confidence            4

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.27  E-value=0.0011  Score=57.57  Aligned_cols=99  Identities=20%  Similarity=0.225  Sum_probs=62.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC--ChHHHHHHHcC-CCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d--~~~~~~~~~~~-~~d~vi~~  142 (252)
                      +.+|||+||+|++|...++.+...|+.++++..+.++.+ .+........   .|..+  -.+.+++...+ .+|+|+..
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~v---i~y~~~~~~~~v~~~t~g~gvDvv~D~  218 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHV---INYREEDFVEQVRELTGGKGVDVVLDT  218 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhcCCCEE---EcCCcccHHHHHHHHcCCCCceEEEEC
Confidence            799999999999999999988888977776666666555 3322222111   12222  13455556554 49999998


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      .|...              ....+..++..  ++++.++...
T Consensus       219 vG~~~--------------~~~~l~~l~~~--G~lv~ig~~~  244 (326)
T COG0604         219 VGGDT--------------FAASLAALAPG--GRLVSIGALS  244 (326)
T ss_pred             CCHHH--------------HHHHHHHhccC--CEEEEEecCC
Confidence            87321              12234444443  5888877654

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.26  E-value=0.00041  Score=56.58  Aligned_cols=39  Identities=41%  Similarity=0.571  Sum_probs=34.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      |+|.|+||+|.+|..+++.|++.|++|++.+|++++.+.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~   39 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEE   39 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHH
Confidence            479999999999999999999999999999998876543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.25  E-value=0.00074  Score=60.52  Aligned_cols=107  Identities=12%  Similarity=0.082  Sum_probs=73.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC-------CC--eEEEeecCchhhhhcc---ccC----CCCeEEEEeeCCCChHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK-------GF--AVKAGVRDLDKAKTTL---SKD----NPSLQIVKADVTEGSAKLS  129 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~-------G~--~V~~~~r~~~~~~~~~---~~~----~~~~~~i~~Dl~d~~~~~~  129 (252)
                      --+|.|+|++|.+|.+++-.|+..       |.  ++++++++.+.++...   .+.    ..++.+...   +     .
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~---~-----y  171 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID---P-----Y  171 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC---C-----H
Confidence            468999999999999999999987       64  7888888877654211   100    011211111   1     3


Q ss_pred             HHHcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHh-cCC-CEEEEEc
Q 025456          130 EAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRK-RGV-NRFILIS  181 (252)
Q Consensus       130 ~~~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~-~~~-~~~v~~S  181 (252)
                      +.+.+ .|+||..||...  ..+..+.++.|..-...+.+.+++ ++. .++|.+|
T Consensus       172 e~~kd-aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs  226 (444)
T PLN00112        172 EVFQD-AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG  226 (444)
T ss_pred             HHhCc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence            45777 999999999754  335556678899989999999988 454 3555555

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.24  E-value=0.01  Score=47.75  Aligned_cols=76  Identities=18%  Similarity=0.275  Sum_probs=51.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecC---chhhhhc------------------cccCC--CCeEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRD---LDKAKTT------------------LSKDN--PSLQIVK  118 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~---~~~~~~~------------------~~~~~--~~~~~i~  118 (252)
                      .++..+|+|.|+ |++|+.++..|++.|. ++++++++   .+.+...                  +....  .+++.+.
T Consensus        18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            456789999998 8999999999999998 69988887   3222110                  00011  2344444


Q ss_pred             eeCCCChHHHHHHHcCCCcEEEEc
Q 025456          119 ADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus       119 ~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+++.  +.+.+.+.+ +|+||.+
T Consensus        97 ~~i~~--~~~~~~~~~-~DlVi~a  117 (200)
T TIGR02354        97 EKITE--ENIDKFFKD-ADIVCEA  117 (200)
T ss_pred             eeCCH--hHHHHHhcC-CCEEEEC
Confidence            55543  556777777 8999877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.00072  Score=54.57  Aligned_cols=160  Identities=13%  Similarity=0.054  Sum_probs=91.2

Q ss_pred             CCcEEEEEcCCChHHHHHHH-----HHHHCC----CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVE-----QLLAKG----FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~-----~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      +++..+.-+++|+|+..|..     ++-+.+    |+|+++.|.+.+..         +++-+.|..--+-++.   .+ 
T Consensus        11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~r---------itw~el~~~Gip~sc~---a~-   77 (315)
T KOG3019|consen   11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKAR---------ITWPELDFPGIPISCV---AG-   77 (315)
T ss_pred             ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCcc---------cccchhcCCCCceehH---HH-
Confidence            45778888999999988876     444444    78999999876543         3333333222010111   11 


Q ss_pred             CcEEEEcCCCCCCCCCCCcceehH-----HHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCcchhccch-hhHH
Q 025456          136 SEAVVCATGFQPGWDLFAPWKVDN-----FGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNV-FGLT  207 (252)
Q Consensus       136 ~d~vi~~ag~~~~~~~~~~~~~n~-----~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~-~~~y  207 (252)
                      ++++.+|+.-.. ..|...++-|+     ..+..+.++..++.  .+.+|.+|..++|-......+++....... +-.-
T Consensus        78 vna~g~n~l~P~-rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~qgfd~~sr  156 (315)
T KOG3019|consen   78 VNAVGNNALLPI-RRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVHQGFDILSR  156 (315)
T ss_pred             HhhhhhhccCch-hhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccccccCChHHHHH
Confidence            333334443211 12333333333     34788888888765  357999999999977655555544322211 1111


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCcccCCCC
Q 025456          208 LIAKLQAEQYIRKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       208 ~~sK~~~e~~~~~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+.|+....+.....+++++||.|.+.|.++
T Consensus       157 L~l~WE~aA~~~~~~~r~~~iR~GvVlG~gG  187 (315)
T KOG3019|consen  157 LCLEWEGAALKANKDVRVALIRIGVVLGKGG  187 (315)
T ss_pred             HHHHHHHHhhccCcceeEEEEEEeEEEecCC
Confidence            2234433333333469999999999988764

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.22  E-value=0.0019  Score=56.98  Aligned_cols=75  Identities=11%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ...+|+|+|+ |.+|...++.|...|.+|++++|++++.+........   .+..+..+ .+.+.+.+.+ .|+||++++
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~---~v~~~~~~-~~~l~~~l~~-aDvVI~a~~  239 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG---RIHTRYSN-AYEIEDAVKR-ADLLIGAVL  239 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc---eeEeccCC-HHHHHHHHcc-CCEEEEccc
Confidence            4577999987 9999999999999999999999987765443211111   12334555 6778888888 999999886


Q ss_pred             C
Q 025456          145 F  145 (252)
Q Consensus       145 ~  145 (252)
                      .
T Consensus       240 ~  240 (370)
T TIGR00518       240 I  240 (370)
T ss_pred             c
Confidence            5

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.21  E-value=0.0019  Score=55.50  Aligned_cols=105  Identities=15%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhh----cccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKT----TLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~----~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      |+|.|.|+ |.+|..++..|+.+|  .+|++++++.+..+.    +...  ......+..   .|    . +.+.+ .|+
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d----~-~~l~~-aDi   70 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GD----Y-ADCKG-ADV   70 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CC----H-HHhCC-CCE
Confidence            47999998 999999999999998  589999998765432    1110  001111111   12    1 34777 999


Q ss_pred             EEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       139 vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      ||.+++....  .+..+.+..|..-...+.+.+++.+.+ .++.++
T Consensus        71 Viita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          71 VVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999987542  233344566777777788877776543 444443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.21  E-value=0.0046  Score=53.39  Aligned_cols=96  Identities=22%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+++|+|+|+. ++|...++.+...|.+|++++|++++.+...+   -+.+.+ .|-+| ++...+.-+. +|++|.+++
T Consensus       166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~---lGAd~~-i~~~~-~~~~~~~~~~-~d~ii~tv~  238 (339)
T COG1064         166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKK---LGADHV-INSSD-SDALEAVKEI-ADAIIDTVG  238 (339)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH---hCCcEE-EEcCC-chhhHHhHhh-CcEEEECCC
Confidence            48999999985 99999888888899999999999988764332   122222 22224 4444444444 899999987


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                       ...             ....++.++..|  +++.++-.
T Consensus       239 -~~~-------------~~~~l~~l~~~G--~~v~vG~~  261 (339)
T COG1064         239 -PAT-------------LEPSLKALRRGG--TLVLVGLP  261 (339)
T ss_pred             -hhh-------------HHHHHHHHhcCC--EEEEECCC
Confidence             321             234556666554  78888754

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.21  E-value=0.0046  Score=49.63  Aligned_cols=107  Identities=22%  Similarity=0.309  Sum_probs=65.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc----------------------cccCCCC--eEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSKDNPS--LQIV  117 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~----------------------~~~~~~~--~~~i  117 (252)
                      .+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                      +....+.  ++.+
T Consensus        18 ~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~   96 (197)
T cd01492          18 RLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD   96 (197)
T ss_pred             HHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence            456789999986 6699999999999996 577776542111110                      1111222  3333


Q ss_pred             EeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeecc
Q 025456          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA  188 (252)
Q Consensus       118 ~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~  188 (252)
                      ...+.+   ...+.+.+ +|+||.+..             |...-..+-+.|++.++ .+|+.++.+.+|.
T Consensus        97 ~~~~~~---~~~~~~~~-~dvVi~~~~-------------~~~~~~~ln~~c~~~~i-p~i~~~~~G~~G~  149 (197)
T cd01492          97 TDDISE---KPEEFFSQ-FDVVVATEL-------------SRAELVKINELCRKLGV-KFYATGVHGLFGF  149 (197)
T ss_pred             ecCccc---cHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEecCCEEE
Confidence            333332   13445667 888886642             22334566788899987 6788777665543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.21  E-value=0.001  Score=61.41  Aligned_cols=44  Identities=30%  Similarity=0.357  Sum_probs=37.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~  107 (252)
                      .+++++++|+|+ |++|++++..|++.|++|+++.|+.++.+.+.
T Consensus       376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la  419 (529)
T PLN02520        376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELA  419 (529)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            356799999998 89999999999999999999999877665543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.20  E-value=0.0038  Score=58.60  Aligned_cols=73  Identities=21%  Similarity=0.282  Sum_probs=58.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag  144 (252)
                      ..+|+|.|. |.+|+.+++.|.++|+++++++.+++..+...+   .+..++.+|.+| ++.++++ +++ .|++|-+.+
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~---~g~~v~~GDat~-~~~L~~agi~~-A~~vv~~~~  473 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNLMRK---YGYKVYYGDATQ-LELLRAAGAEK-AEAIVITCN  473 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh---CCCeEEEeeCCC-HHHHHhcCCcc-CCEEEEEeC
Confidence            467999996 999999999999999999999999887665432   468899999999 7767655 334 888886653

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.20  E-value=0.0054  Score=52.61  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+++|+|+++.+|..+++.+...|.+|++++++.++.+.... ..  ... ..|..+.  .+.+.+...+ .+|.+++
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~  241 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE-LG--ADY-VIDYRKEDFVREVRELTGKRGVDVVVE  241 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC--CCe-EEecCChHHHHHHHHHhCCCCCcEEEE
Confidence            46899999999999999999999999999999888765543211 11  111 2344441  1223333322 4899999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      ++|..              .....++.++..  ++++.+++..
T Consensus       242 ~~g~~--------------~~~~~~~~l~~~--G~~v~~~~~~  268 (342)
T cd08266         242 HVGAA--------------TWEKSLKSLARG--GRLVTCGATT  268 (342)
T ss_pred             CCcHH--------------HHHHHHHHhhcC--CEEEEEecCC
Confidence            98731              122344545443  5899887653

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.19  E-value=0.0013  Score=55.71  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCC--CeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNP--SLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~--~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .++++++|.|+ ||.|++++-.|++.|. +|+++.|+.++.+.+......  +...+.  ..+ ...+.+.+.. +|+||
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~--~~~-~~~~~~~~~~-~divI  199 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVD-ARGIEDVIAA-ADGVV  199 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE--ecC-HhHHHHHHhh-cCEEE
Confidence            45789999997 9999999999999996 788999998777654321111  111111  112 2223334455 89999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      |+...
T Consensus       200 NaTp~  204 (283)
T PRK14027        200 NATPM  204 (283)
T ss_pred             EcCCC
Confidence            98754

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.19  E-value=0.0024  Score=57.27  Aligned_cols=41  Identities=17%  Similarity=0.085  Sum_probs=36.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~  106 (252)
                      ..++|.|.|. |.+|..++..|+++|++|++.++++++.+.+
T Consensus         2 ~~~kI~VIGl-G~~G~~~A~~La~~G~~V~~~D~~~~~v~~l   42 (415)
T PRK11064          2 SFETISVIGL-GYIGLPTAAAFASRQKQVIGVDINQHAVDTI   42 (415)
T ss_pred             CccEEEEECc-chhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            3578999985 9999999999999999999999998877653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.19  E-value=0.0023  Score=54.65  Aligned_cols=71  Identities=20%  Similarity=0.323  Sum_probs=52.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ...+++++|+|. |.+|+.++..|.+.|.+|++.+|+++.......   .+++++     + .+.+.+.+.+ .|+||++
T Consensus       149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~---~G~~~~-----~-~~~l~~~l~~-aDiVI~t  217 (296)
T PRK08306        149 TIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARITE---MGLSPF-----H-LSELAEEVGK-IDIIFNT  217 (296)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---cCCeee-----c-HHHHHHHhCC-CCEEEEC
Confidence            346899999997 889999999999999999999999765433221   223322     1 2346667777 9999998


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      +.
T Consensus       218 ~p  219 (296)
T PRK08306        218 IP  219 (296)
T ss_pred             CC
Confidence            64

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.18  E-value=0.0016  Score=58.26  Aligned_cols=75  Identities=17%  Similarity=0.307  Sum_probs=55.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ++.+++++|.|+ |++|+.+++.|.+.|. ++++..|+.++...+..... ...     ... .+++.+.+.. .|+||+
T Consensus       178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~-~~~-----~~~-~~~l~~~l~~-aDiVI~  248 (414)
T PRK13940        178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR-NAS-----AHY-LSELPQLIKK-ADIIIA  248 (414)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc-CCe-----Eec-HHHHHHHhcc-CCEEEE
Confidence            467899999997 9999999999999995 79999999877655433111 111     112 3456677888 999999


Q ss_pred             cCCCC
Q 025456          142 ATGFQ  146 (252)
Q Consensus       142 ~ag~~  146 (252)
                      |.+..
T Consensus       249 aT~a~  253 (414)
T PRK13940        249 AVNVL  253 (414)
T ss_pred             CcCCC
Confidence            98754

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.17  E-value=0.0079  Score=47.25  Aligned_cols=98  Identities=24%  Similarity=0.307  Sum_probs=60.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc---hhhh------------------hccccCCC--CeEEEEeeCCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL---DKAK------------------TTLSKDNP--SLQIVKADVTE  123 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~---~~~~------------------~~~~~~~~--~~~~i~~Dl~d  123 (252)
                      +|+|.|+ |++|.++++.|++.|. ++++++.+.   +.+.                  +.+....+  +++.+...+..
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            5889996 9999999999999997 588888764   1111                  00111122  33444444433


Q ss_pred             ChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccc
Q 025456          124 GSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSI  183 (252)
Q Consensus       124 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~  183 (252)
                        +.+.+.+++ +|+||.+..             |...-..+.+.+.+. ++ .+|+.+..
T Consensus        80 --~~~~~~l~~-~DlVi~~~d-------------~~~~r~~i~~~~~~~~~i-p~i~~~~~  123 (174)
T cd01487          80 --NNLEGLFGD-CDIVVEAFD-------------NAETKAMLAESLLGNKNK-PVVCASGM  123 (174)
T ss_pred             --hhHHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHHCCC-CEEEEehh
Confidence              456677777 999988743             222234466666665 65 56665433

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.17  E-value=0.0021  Score=51.78  Aligned_cols=72  Identities=18%  Similarity=0.257  Sum_probs=49.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ++++++++|.|| |-+|...++.|++.|++|+++.+..... .+...  ...+.+..-++..      ..+.+ .|+||-
T Consensus         7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~--~~~i~~~~~~~~~------~~l~~-adlVia   76 (202)
T PRK06718          7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTENLVKLVE--EGKIRWKQKEFEP------SDIVD-AFLVIA   76 (202)
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHh--CCCEEEEecCCCh------hhcCC-ceEEEE
Confidence            457999999998 9999999999999999999988764322 22221  1345554433322      23556 888876


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      +.+
T Consensus        77 aT~   79 (202)
T PRK06718         77 ATN   79 (202)
T ss_pred             cCC
Confidence            643

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=97.17  E-value=0.0026  Score=57.52  Aligned_cols=77  Identities=13%  Similarity=0.283  Sum_probs=55.0

Q ss_pred             ccCCCcEEEEEcC----------------CChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCCh
Q 025456           62 VSVKQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS  125 (252)
Q Consensus        62 ~~~~~~~vlVtGa----------------tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~  125 (252)
                      .+++|++|+||+|                ||-.|.+|++.+..+|++|+++.-..+ .    . ...+++++.++=   .
T Consensus       252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~----~-~p~~v~~i~V~t---a  322 (475)
T PRK13982        252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-L----A-DPQGVKVIHVES---A  322 (475)
T ss_pred             cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-C----C-CCCCceEEEecC---H
Confidence            3578999999987                799999999999999999998874322 1    1 224577766543   3


Q ss_pred             HHHHHHHcC--CCcEEEEcCCCCC
Q 025456          126 AKLSEAIGD--DSEAVVCATGFQP  147 (252)
Q Consensus       126 ~~~~~~~~~--~~d~vi~~ag~~~  147 (252)
                      +++.+++..  +.|++|++|++..
T Consensus       323 ~eM~~av~~~~~~Di~I~aAAVaD  346 (475)
T PRK13982        323 RQMLAAVEAALPADIAIFAAAVAD  346 (475)
T ss_pred             HHHHHHHHhhCCCCEEEEeccccc
Confidence            333333322  3799999998754

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.17  E-value=0.0017  Score=55.83  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=33.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK  104 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~  104 (252)
                      ++|.|+| .|.+|..++..|+++|++|++.+|+++..+
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~   39 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAA   39 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHH
Confidence            5799999 699999999999999999999999976544

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.14  E-value=0.004  Score=57.98  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=57.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ..+++|.|+ |-+|++++++|.++|++|++++.++++.++..+   .+...+.+|.+| ++.++++--++.|.++-+.+
T Consensus       417 ~~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~---~g~~~i~GD~~~-~~~L~~a~i~~a~~viv~~~  490 (558)
T PRK10669        417 CNHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE---RGIRAVLGNAAN-EEIMQLAHLDCARWLLLTIP  490 (558)
T ss_pred             CCCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---CCCeEEEcCCCC-HHHHHhcCccccCEEEEEcC
Confidence            357888986 999999999999999999999999887665432   478999999999 67666542223888775543

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.14  E-value=0.0036  Score=53.74  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=71.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---ccc-C----CCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSK-D----NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~-~----~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      +|.|.|+ |.+|..++..|+.+|.  ++++++.+.+..+..   +.+ .    ..++.+...|        .+.+.+ .|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~--------y~~~~~-aD   70 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD--------YDDCAD-AD   70 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC--------HHHhCC-CC
Confidence            5789998 9999999999998874  799999876544321   111 0    1133333222        245777 99


Q ss_pred             EEEEcCCCCCC--CC--CCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          138 AVVCATGFQPG--WD--LFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       138 ~vi~~ag~~~~--~~--~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +||.+||....  .+  ..+.+..|..-.+.+.+.+++.+..-++.+-|
T Consensus        71 ivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs  119 (307)
T cd05290          71 IIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT  119 (307)
T ss_pred             EEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            99999997542  23  35667889988999999998887544444433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.13  E-value=0.0074  Score=52.65  Aligned_cols=26  Identities=23%  Similarity=0.521  Sum_probs=24.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF   91 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~   91 (252)
                      ..+|.|.||||++|+++++.|.++++
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~h   32 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDF   32 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCC
Confidence            57899999999999999999999776

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=97.12  E-value=0.0097  Score=48.61  Aligned_cols=104  Identities=23%  Similarity=0.317  Sum_probs=65.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhh----------------------hhccccCCCCeEEEEee
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKA----------------------KTTLSKDNPSLQIVKAD  120 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~----------------------~~~~~~~~~~~~~i~~D  120 (252)
                      ++.-+|+|.|. |++|++.++.|++-|. ++++++.+.=..                      ++.+....+.+++...|
T Consensus        28 l~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~  106 (263)
T COG1179          28 LKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN  106 (263)
T ss_pred             HhhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH
Confidence            35679999997 9999999999999985 677666542110                      00111123444444433


Q ss_pred             -CCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcccee
Q 025456          121 -VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV  185 (252)
Q Consensus       121 -l~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v  185 (252)
                       .-. ++.+.+.+...+|.||.+.-             |+..-..|++.|+++++ .  ++||.++
T Consensus       107 ~f~t-~en~~~~~~~~~DyvIDaiD-------------~v~~Kv~Li~~c~~~ki-~--vIss~Ga  155 (263)
T COG1179         107 DFIT-EENLEDLLSKGFDYVIDAID-------------SVRAKVALIAYCRRNKI-P--VISSMGA  155 (263)
T ss_pred             hhhC-HhHHHHHhcCCCCEEEEchh-------------hhHHHHHHHHHHHHcCC-C--EEeeccc
Confidence             223 56666666555888887753             34455688999999886 3  4555544

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.11  E-value=0.0022  Score=55.60  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      +.+|+|+||+|.+|..+++.+...|. +|+++++++++.+......  +++.+ .|..+.  .+.+.+...+.+|+||++
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l--Ga~~v-i~~~~~~~~~~i~~~~~~gvd~vid~  231 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL--GFDAA-INYKTDNVAERLRELCPEGVDVYFDN  231 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc--CCcEE-EECCCCCHHHHHHHHCCCCceEEEEC
Confidence            38999999999999999988888898 7999888876654322111  12221 232221  233443332239999998


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .|..              .....++.++..  +++|.++..
T Consensus       232 ~g~~--------------~~~~~~~~l~~~--G~iv~~G~~  256 (345)
T cd08293         232 VGGE--------------ISDTVISQMNEN--SHIILCGQI  256 (345)
T ss_pred             CCcH--------------HHHHHHHHhccC--CEEEEEeee
Confidence            8731              112344444444  478877643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK07411 hypothetical protein; Validated

Probab=97.11  E-value=0.0073  Score=53.65  Aligned_cols=105  Identities=15%  Similarity=0.177  Sum_probs=66.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCC--CeEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNP--SLQI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~--~~~~  116 (252)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++.+.=....                      .+....+  +++.
T Consensus        34 ~~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~  112 (390)
T PRK07411         34 KRLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL  112 (390)
T ss_pred             HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            3456789999997 8999999999999996 57776664211110                      0111122  3444


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      +...++.  +...+.+.+ +|+||.|..             |...-..+-++|.+.++ .+|+.+..+
T Consensus       113 ~~~~~~~--~~~~~~~~~-~D~Vvd~~d-------------~~~~r~~ln~~~~~~~~-p~v~~~~~g  163 (390)
T PRK07411        113 YETRLSS--ENALDILAP-YDVVVDGTD-------------NFPTRYLVNDACVLLNK-PNVYGSIFR  163 (390)
T ss_pred             EecccCH--HhHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEEcc
Confidence            4444543  445667787 999998864             23333456677888875 566655443

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=97.10  E-value=0.0024  Score=55.69  Aligned_cols=78  Identities=14%  Similarity=0.117  Sum_probs=49.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--C-CCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--D-DSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~-~~d~vi  140 (252)
                      .+++.|||.||+|++|++.++.+...|..+++..++.+..+.... .  +.+ ...|..+ ++-+++..+  + .+|+|+
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~-l--GAd-~vvdy~~-~~~~e~~kk~~~~~~DvVl  230 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKK-L--GAD-EVVDYKD-ENVVELIKKYTGKGVDVVL  230 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHH-c--CCc-EeecCCC-HHHHHHHHhhcCCCccEEE
Confidence            358899999999999999999888889444444555444332211 1  111 1346666 443443333  2 499999


Q ss_pred             EcCCCC
Q 025456          141 CATGFQ  146 (252)
Q Consensus       141 ~~ag~~  146 (252)
                      .|+|..
T Consensus       231 D~vg~~  236 (347)
T KOG1198|consen  231 DCVGGS  236 (347)
T ss_pred             ECCCCC
Confidence            999864

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.08  E-value=0.0058  Score=57.61  Aligned_cols=74  Identities=23%  Similarity=0.288  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ..+|+|.|. |.+|+.+++.|.++|.++++++.+++..+....   .+..++.+|.+| ++-++++=-++.|.||-+..
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~---~g~~v~~GDat~-~~~L~~agi~~A~~vvv~~~  473 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK---FGMKVFYGDATR-MDLLESAGAAKAEVLINAID  473 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh---cCCeEEEEeCCC-HHHHHhcCCCcCCEEEEEeC
Confidence            468999997 999999999999999999999999887765432   468899999999 77666542224888887653

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.06  E-value=0.0036  Score=53.12  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=65.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .++++.|+|+.| +|.--++...+.|++|+++++...+.++.+..  -+.+.+ .|-+++++.++++.+. .|.++|++.
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~--LGAd~f-v~~~~d~d~~~~~~~~-~dg~~~~v~  255 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS--LGADVF-VDSTEDPDIMKAIMKT-TDGGIDTVS  255 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHh--cCccee-EEecCCHHHHHHHHHh-hcCcceeee
Confidence            589999999977 99877776667899999999987665554432  233333 3445226777777665 666666654


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .....           ....+++.+|..|  ++|+++-.
T Consensus       256 ~~a~~-----------~~~~~~~~lk~~G--t~V~vg~p  281 (360)
T KOG0023|consen  256 NLAEH-----------ALEPLLGLLKVNG--TLVLVGLP  281 (360)
T ss_pred             ecccc-----------chHHHHHHhhcCC--EEEEEeCc
Confidence            11110           1234566667654  78888754

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.04  E-value=0.0051  Score=55.49  Aligned_cols=67  Identities=28%  Similarity=0.353  Sum_probs=46.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      |+|.|.||+|.+|..+++.|.+.|++|++.+|+++...+....  .++.     ..+   ...+.+.+ .|+||.+..
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~--~gv~-----~~~---~~~e~~~~-aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE--LGVE-----YAN---DNIDAAKD-ADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH--cCCe-----ecc---CHHHHhcc-CCEEEEecC
Confidence            4799999999999999999999999999999987654322211  1221     111   13344556 788887764

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.03  E-value=0.005  Score=53.03  Aligned_cols=107  Identities=19%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhc---cccCC---CCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTT---LSKDN---PSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~---~~~~~---~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      .++|.|+|+ |.+|..++-.|+..|  .++++++.+.+..+..   +.+..   ....+...  .|    .+ .+.+ .|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~d----y~-~~~~-ad   73 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KD----YS-VTAN-SK   73 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CC----HH-HhCC-CC
Confidence            469999996 999999999998877  4788888876544321   11110   11122210  12    22 3677 99


Q ss_pred             EEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      +||.+||....  .+..+.+..|..-.+.+.+.+++.+. ..++.+|
T Consensus        74 ivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  120 (312)
T cd05293          74 VVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS  120 (312)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence            99999997542  34445567888878888888877754 3455555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.03  E-value=0.011  Score=49.06  Aligned_cols=75  Identities=27%  Similarity=0.399  Sum_probs=52.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      |+|+|.||| .=|+.|++.|.++|+ |++.+-..- ..+........+.++.+-+.+ .+.+.+.+.+ .++.||.+..+
T Consensus         1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t~~-g~~~~~~~~~~~~v~~G~lg~-~~~l~~~l~~~~i~~vIDATHP   76 (249)
T PF02571_consen    1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVATSY-GGELLKPELPGLEVRVGRLGD-EEGLAEFLRENGIDAVIDATHP   76 (249)
T ss_pred             CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEhhh-hHhhhccccCCceEEECCCCC-HHHHHHHHHhCCCcEEEECCCc
Confidence            689999998 678999999999998 554333222 222221122456777787767 7888888864 59999987644

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.03  E-value=0.0029  Score=53.66  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +.++++|+|.|++|.+|+.++..|+++|..|++..|..                         ..+.+.+.+ .|+||++
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-------------------------~~L~~~~~~-aDIvI~A  209 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-------------------------QNLPELVKQ-ADIIVGA  209 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-------------------------hhHHHHhcc-CCEEEEc
Confidence            46799999999998999999999999999888776521                         123344566 8889888


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      .|
T Consensus       210 tG  211 (283)
T PRK14192        210 VG  211 (283)
T ss_pred             cC
Confidence            86

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.02  E-value=0.0061  Score=52.69  Aligned_cols=108  Identities=18%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh-ccc---c---CCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT-TLS---K---DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~-~~~---~---~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      +.++|.|.|+ |.+|..++..++..|. +|++++++++.... .++   .   ......+..  -+|    . +.+.+ .
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d----~-~~l~~-a   75 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNN----Y-EDIAG-S   75 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCC----H-HHhCC-C
Confidence            3579999995 9999999999999895 89999988764321 010   0   011122221  012    2 35678 9


Q ss_pred             cEEEEcCCCCCCC-------CCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          137 EAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       137 d~vi~~ag~~~~~-------~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      |+||.++|.....       +..+.+..|..-...+.+.+.+...+ .++.+|
T Consensus        76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s  128 (321)
T PTZ00082         76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT  128 (321)
T ss_pred             CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999999875421       22234456776677777777766544 566655

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.02  E-value=0.0034  Score=53.87  Aligned_cols=112  Identities=17%  Similarity=0.099  Sum_probs=68.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc-cccCCCC-eEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT-LSKDNPS-LQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~-~~~~~~~-~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ++|.|.|+ |.+|..++..|+.+|. +|+++++..+..... .+..... .......+.- ..+..+ +.+ .|+||.++
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~~-~~~-aDiVIita   77 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNNYAD-TAN-SDIVVITA   77 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCCHHH-hCC-CCEEEEcC
Confidence            58999997 9999999999999886 899999865533211 1000000 0000111110 112333 567 99999999


Q ss_pred             CCCCCC--CCCCcceehHHHHHHHHHHHHhcCC-CEEEEEcc
Q 025456          144 GFQPGW--DLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (252)
Q Consensus       144 g~~~~~--~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~SS  182 (252)
                      |.....  +..+.+..|..-.+.+++.+++.+. ..+|.+|-
T Consensus        78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN  119 (305)
T TIGR01763        78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN  119 (305)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            965422  2334456788888888888876653 34555553

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN02602 lactate dehydrogenase

Probab=97.01  E-value=0.0023  Score=55.85  Aligned_cols=106  Identities=17%  Similarity=0.242  Sum_probs=69.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhcc---ccC---CCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTL---SKD---NPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~---~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      ++|.|+|+ |.+|..++-.|+..|.  ++++++.+.+..+...   .+.   .....+ ..+ .|    . +.+.+ .|+
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i-~~~-~d----y-~~~~d-aDi  108 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKI-LAS-TD----Y-AVTAG-SDL  108 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEE-EeC-CC----H-HHhCC-CCE
Confidence            69999996 9999999999988774  7898998776543211   100   111222 211 12    1 23677 999


Q ss_pred             EEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          139 VVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       139 vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      ||.+||...  ..+..+.+..|..-...+.+.+++.+. ..+|.+|
T Consensus       109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            999999754  234445667788778888888877754 3455555

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.01  E-value=0.0055  Score=51.29  Aligned_cols=66  Identities=24%  Similarity=0.317  Sum_probs=42.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC-CCeEEEee-cCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGV-RDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~-r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ++|.|+|++|.+|+.+++.+.+. +.+++.+. ++++.....          -..++.. .+++.+.+.+ +|+||.++.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----------~~~~i~~-~~dl~~ll~~-~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----------GALGVAI-TDDLEAVLAD-ADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----------CCCCccc-cCCHHHhccC-CCEEEECCC
Confidence            68999999999999999988874 67877654 443322111          1112222 2335555666 899988764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.00  E-value=0.0031  Score=50.09  Aligned_cols=110  Identities=23%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCC----CCeE-EEE-----eeCCCChHHHHHHHcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN----PSLQ-IVK-----ADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~-~i~-----~Dl~d~~~~~~~~~~~~~  136 (252)
                      |+|.|.| .|++|..++..|++.|++|++++.++++.+.+..+..    +++. .+.     +.+.- ..+..+++.. .
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai~~-a   77 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAIKD-A   77 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHHHH--
T ss_pred             CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhhhc-c
Confidence            6888997 5999999999999999999999999887665433211    0000 000     00000 1223344555 8


Q ss_pred             cEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccc
Q 025456          137 EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSI  183 (252)
Q Consensus       137 d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~  183 (252)
                      |++|-|.+.....+.    ..|+.....+++...+. .-+.+|.+-|.
T Consensus        78 dv~~I~VpTP~~~~~----~~Dls~v~~a~~~i~~~l~~~~lvV~~ST  121 (185)
T PF03721_consen   78 DVVFICVPTPSDEDG----SPDLSYVESAIESIAPVLRPGDLVVIEST  121 (185)
T ss_dssp             SEEEE----EBETTT----SBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred             ceEEEecCCCccccC----CccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence            999999876443221    22344444444444322 22355555443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.00  E-value=0.011  Score=42.07  Aligned_cols=90  Identities=20%  Similarity=0.301  Sum_probs=58.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++++++++|+|| |-+|..=++.|++.|.+|++++......+       ..+++..-++       .+.+.+ .+.||-+
T Consensus         4 ~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~~~~~-------~~i~~~~~~~-------~~~l~~-~~lV~~a   67 (103)
T PF13241_consen    4 DLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEIEFSE-------GLIQLIRREF-------EEDLDG-ADLVFAA   67 (103)
T ss_dssp             --TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSEHHHH-------TSCEEEESS--------GGGCTT-ESEEEE-
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCchhhhh-------hHHHHHhhhH-------HHHHhh-heEEEec
Confidence            457999999998 99999999999999999999988751111       2344433222       234667 8888855


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .+-             -.-...+.+.|++.+  .+|++...
T Consensus        68 t~d-------------~~~n~~i~~~a~~~~--i~vn~~D~   93 (103)
T PF13241_consen   68 TDD-------------PELNEAIYADARARG--ILVNVVDD   93 (103)
T ss_dssp             SS--------------HHHHHHHHHHHHHTT--SEEEETT-
T ss_pred             CCC-------------HHHHHHHHHHHhhCC--EEEEECCC
Confidence            431             122356777888776  47787654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.99  E-value=0.0018  Score=54.78  Aligned_cols=106  Identities=17%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEE-eeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVK-ADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~-~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ..++++++|.|| ||.+++++..|++.| .+|+++.|+.++.+++..........+. .++.+ .+...    . .|+||
T Consensus       123 ~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~-~~~~~----~-~dliI  195 (283)
T COG0169         123 DVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALAD-LEGLE----E-ADLLI  195 (283)
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccc-ccccc----c-cCEEE
Confidence            335799999997 999999999999999 5799999999887665432111111111 22222 11111    4 89999


Q ss_pred             EcCCCCCCCC--C-----------CCcceehHHH-HHHHHHHHHhcCCC
Q 025456          141 CATGFQPGWD--L-----------FAPWKVDNFG-TVNLVEACRKRGVN  175 (252)
Q Consensus       141 ~~ag~~~~~~--~-----------~~~~~~n~~g-~~~ll~~~~~~~~~  175 (252)
                      |+........  .           .-.+++++.- -..+++.|+++|.+
T Consensus       196 NaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~  244 (283)
T COG0169         196 NATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQGAK  244 (283)
T ss_pred             ECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence            9875432111  0           0123444442 45688889988874

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=96.96  E-value=0.0039  Score=53.57  Aligned_cols=99  Identities=19%  Similarity=0.151  Sum_probs=61.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+|+|+||+|.+|..+++.+...|.+|+++++++++.+.... .  +++.+ .|..++  .+.+.+...+.+|+|+++
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~--Ga~~v-i~~~~~~~~~~v~~~~~~gvd~vld~  218 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-L--GFDAV-FNYKTVSLEEALKEAAPDGIDCYFDN  218 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--CCCEE-EeCCCccHHHHHHHHCCCCcEEEEEC
Confidence            47899999999999999998888899999998888766544322 1  22211 233321  223333332238999998


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .|..              .....++.++..  ++++.++..
T Consensus       219 ~g~~--------------~~~~~~~~l~~~--G~iv~~g~~  243 (329)
T cd08294         219 VGGE--------------FSSTVLSHMNDF--GRVAVCGSI  243 (329)
T ss_pred             CCHH--------------HHHHHHHhhccC--CEEEEEcch
Confidence            7721              122334444433  478887654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.95  E-value=0.01  Score=54.29  Aligned_cols=104  Identities=14%  Similarity=0.103  Sum_probs=66.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC-------------h--HHHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-------------S--AKLS  129 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-------------~--~~~~  129 (252)
                      .+.+|+|+|+ |-+|...+..+...|.+|+++++++++.+....   -+.+++..|..+.             .  +...
T Consensus       164 pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes---lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        164 PPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES---MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---cCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            4789999997 999999999999999999999999877654322   2344443333220             0  1112


Q ss_pred             HH----HcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          130 EA----IGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       130 ~~----~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +.    .++ +|+||.+++......+. .      -+...++.++.-  +.+|.++.
T Consensus       240 ~~~~~~~~g-aDVVIetag~pg~~aP~-l------it~~~v~~mkpG--gvIVdvg~  286 (509)
T PRK09424        240 ALFAEQAKE-VDIIITTALIPGKPAPK-L------ITAEMVASMKPG--SVIVDLAA  286 (509)
T ss_pred             HHHHhccCC-CCEEEECCCCCcccCcc-h------HHHHHHHhcCCC--CEEEEEcc
Confidence            22    245 99999999874422221 1      134455555533  36888775

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.94  E-value=0.0036  Score=56.29  Aligned_cols=73  Identities=26%  Similarity=0.443  Sum_probs=53.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ..+++|+|+|+ |.+|..+++.|...|. +|++..|++++...+....+  .     +..+ .+++.+.+.+ .|+||.+
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g--~-----~~~~-~~~~~~~l~~-aDvVI~a  249 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG--G-----EAIP-LDELPEALAE-ADIVISS  249 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC--C-----cEee-HHHHHHHhcc-CCEEEEC
Confidence            56899999997 9999999999999997 79999998877654332111  1     1222 3445666777 9999999


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      .+..
T Consensus       250 T~s~  253 (423)
T PRK00045        250 TGAP  253 (423)
T ss_pred             CCCC
Confidence            7643

>PRK14852 hypothetical protein; Provisional

Probab=96.91  E-value=0.01  Score=57.88  Aligned_cols=107  Identities=15%  Similarity=0.151  Sum_probs=68.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhh----------------------hccccCCC--CeEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAK----------------------TTLSKDNP--SLQI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~----------------------~~~~~~~~--~~~~  116 (252)
                      ..+++.+|+|.|+ ||+|..++..|+..|. ++++++.+.=...                      +.+....+  +++.
T Consensus       328 ~kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~  406 (989)
T PRK14852        328 RRLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRS  406 (989)
T ss_pred             HHHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEE
Confidence            4567899999996 8999999999999986 5666665421110                      00111223  3444


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      +...++  .+.+.+.+.+ +|+||.+....           ....-..+.+.|++.++ .+|+.++.+
T Consensus       407 ~~~~I~--~en~~~fl~~-~DiVVDa~D~~-----------~~~~rr~l~~~c~~~~I-P~I~ag~~G  459 (989)
T PRK14852        407 FPEGVA--AETIDAFLKD-VDLLVDGIDFF-----------ALDIRRRLFNRALELGI-PVITAGPLG  459 (989)
T ss_pred             EecCCC--HHHHHHHhhC-CCEEEECCCCc-----------cHHHHHHHHHHHHHcCC-CEEEeeccc
Confidence            444453  4667788888 99999775321           12233567777888887 577766643

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.89  E-value=0.0063  Score=52.13  Aligned_cols=104  Identities=21%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             EEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhcccc---C-C--CCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           69 IFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK---D-N--PSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~---~-~--~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      |.|.|+ |.+|..++-.|+..|  .++++++++.+..+....+   . .  ....+.   .++  +  .+.+.+ .|+||
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~---~~~--~--~~~l~~-aDiVI   71 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIV---RGG--D--YADAAD-ADIVV   71 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEE---ECC--C--HHHhCC-CCEEE
Confidence            468886 899999999999988  6899999987655432111   0 0  111221   122  1  246778 99999


Q ss_pred             EcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          141 CATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       141 ~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .++|...  ..+..+.+..|+.-...+.+.+++.+.+ .++.+|
T Consensus        72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            9999754  2344455677888888888888877643 455544

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK14851 hypothetical protein; Provisional

Probab=96.88  E-value=0.012  Score=55.86  Aligned_cols=104  Identities=13%  Similarity=0.166  Sum_probs=66.5

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhh---h-------------------hccccCC--CCeEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKA---K-------------------TTLSKDN--PSLQI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~---~-------------------~~~~~~~--~~~~~  116 (252)
                      ..+++.+|+|.|+ |++|.+++..|+..|. ++++++.+.=..   .                   +.+....  .+++.
T Consensus        39 ~kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~  117 (679)
T PRK14851         39 ERLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITP  117 (679)
T ss_pred             HHHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEE
Confidence            3456899999996 9999999999999996 566666542111   0                   0011112  24555


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      +...++.  +.+.+.+.+ +|+||.+.-..           .+..-..+.+.|++.++ .+|+.+
T Consensus       118 ~~~~i~~--~n~~~~l~~-~DvVid~~D~~-----------~~~~r~~l~~~c~~~~i-P~i~~g  167 (679)
T PRK14851        118 FPAGINA--DNMDAFLDG-VDVVLDGLDFF-----------QFEIRRTLFNMAREKGI-PVITAG  167 (679)
T ss_pred             EecCCCh--HHHHHHHhC-CCEEEECCCCC-----------cHHHHHHHHHHHHHCCC-CEEEee
Confidence            5556643  567788888 99999775310           12233467778888887 465554

>PLN00203 glutamyl-tRNA reductase

Probab=96.88  E-value=0.004  Score=57.15  Aligned_cols=75  Identities=20%  Similarity=0.338  Sum_probs=54.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +.+++|+|.|+ |.+|..+++.|...|. +|+++.|+.++...+.... .+..+...+    .+++.+.+.+ .|+||.+
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~-~g~~i~~~~----~~dl~~al~~-aDVVIsA  336 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF-PDVEIIYKP----LDEMLACAAE-ADVVFTS  336 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh-CCCceEeec----HhhHHHHHhc-CCEEEEc
Confidence            56899999998 9999999999999996 7999999987766543311 122221112    3345667777 9999988


Q ss_pred             CCC
Q 025456          143 TGF  145 (252)
Q Consensus       143 ag~  145 (252)
                      .+.
T Consensus       337 T~s  339 (519)
T PLN00203        337 TSS  339 (519)
T ss_pred             cCC
Confidence            754

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.87  E-value=0.0047  Score=53.16  Aligned_cols=73  Identities=27%  Similarity=0.392  Sum_probs=52.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ..+++|+|.|+ |.+|..+++.|...| .+|+++.|++++........+  ...     .+ .+++.+.+.+ .|+||.+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g--~~~-----~~-~~~~~~~l~~-aDvVi~a  245 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG--GNA-----VP-LDELLELLNE-ADVVISA  245 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC--CeE-----Ee-HHHHHHHHhc-CCEEEEC
Confidence            46899999997 999999999999876 689999998876654332111  122     22 3446667777 9999999


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      .+..
T Consensus       246 t~~~  249 (311)
T cd05213         246 TGAP  249 (311)
T ss_pred             CCCC
Confidence            8743

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.86  E-value=0.017  Score=50.70  Aligned_cols=74  Identities=22%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|.|+ |.+|..+++.+...|.+|++++.+.++........  +++.+ .|..+ .+.+.+...+ +|+||.+.|
T Consensus       183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~--Ga~~v-i~~~~-~~~~~~~~~~-~D~vid~~g  256 (360)
T PLN02586        183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL--GADSF-LVSTD-PEKMKAAIGT-MDYIIDTVS  256 (360)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC--CCcEE-EcCCC-HHHHHhhcCC-CCEEEECCC
Confidence            4789999775 99999999988888999888777665433222111  22221 23333 3445555556 999999987

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=96.85  E-value=0.0057  Score=51.92  Aligned_cols=76  Identities=13%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++++|+|++|.+|..+++.+...|.+|++++++.++.+.... .  ++.. ..|..+.  .+.+.+...+ .+|.+++
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--g~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~  219 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQ-A--GADA-VFNYRAEDLADRILAATAGQGVDVIIE  219 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--CCCE-EEeCCCcCHHHHHHHHcCCCceEEEEE
Confidence            47899999999999999999999999999999888765543321 1  2221 1343331  1334344332 4999999


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      ++|
T Consensus       220 ~~~  222 (325)
T cd08253         220 VLA  222 (325)
T ss_pred             CCc
Confidence            986

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.84  E-value=0.0075  Score=51.33  Aligned_cols=80  Identities=21%  Similarity=0.284  Sum_probs=50.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCch---hhhhccccCCC--CeEEEEeeCCCChHHHHHHHcCCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD---KAKTTLSKDNP--SLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~---~~~~~~~~~~~--~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      +.++++++|.|+ |+.+++++-.|+..|. +|+++.|+.+   +.+.+......  ...+...++.+ .+.+.+.+.+ .
T Consensus       121 ~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-a  197 (288)
T PRK12749        121 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-QQAFAEALAS-A  197 (288)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhh-hhhhhhhccc-C
Confidence            346789999997 8889999999999985 7999999853   44333221111  11111122222 2234445566 9


Q ss_pred             cEEEEcCCC
Q 025456          137 EAVVCATGF  145 (252)
Q Consensus       137 d~vi~~ag~  145 (252)
                      |+|||+..+
T Consensus       198 DivINaTp~  206 (288)
T PRK12749        198 DILTNGTKV  206 (288)
T ss_pred             CEEEECCCC
Confidence            999998643

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.83  E-value=0.0053  Score=55.05  Aligned_cols=73  Identities=27%  Similarity=0.400  Sum_probs=53.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ...+++++|+|+ |.+|..+++.|...| .+|+++.|+.++.........  ...+     + .+++.+.+.+ .|+||.
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g--~~~i-----~-~~~l~~~l~~-aDvVi~  246 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELG--GEAV-----K-FEDLEEYLAE-ADIVIS  246 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC--CeEe-----e-HHHHHHHHhh-CCEEEE
Confidence            356899999997 999999999999999 789999998876544332111  1111     2 2446667777 999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      +.+.
T Consensus       247 aT~s  250 (417)
T TIGR01035       247 STGA  250 (417)
T ss_pred             CCCC
Confidence            8764

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.83  E-value=0.013  Score=48.48  Aligned_cols=98  Identities=19%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHc-CCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIG-DDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~-~~~d~vi~  141 (252)
                      .+.+|+|+|+++ +|..+++.+...|.+|+++++++++.+.... ... -.+  .|..+.  .+.+. ... +.+|++|+
T Consensus       134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~-~~~--~~~~~~~~~~~~~-~~~~~~~d~vi~  207 (271)
T cd05188         134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKE-LGA-DHV--IDYKEEDLEEELR-LTGGGGADVVID  207 (271)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-hCC-cee--ccCCcCCHHHHHH-HhcCCCCCEEEE
Confidence            578999999988 9999999888899999999888765443211 111 111  232220  12222 222 14999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +++..             .....+++.++..  ++++.++..
T Consensus       208 ~~~~~-------------~~~~~~~~~l~~~--G~~v~~~~~  234 (271)
T cd05188         208 AVGGP-------------ETLAQALRLLRPG--GRIVVVGGT  234 (271)
T ss_pred             CCCCH-------------HHHHHHHHhcccC--CEEEEEccC
Confidence            98732             1234455555544  478888765

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=96.82  E-value=0.016  Score=49.70  Aligned_cols=98  Identities=19%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC-hHHHHHHHcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +.+|+|.|++|.+|..+++.+...|.+|+++++++++.+.... .  ++..+ .|..+. .+.+.+.-.+.+|+|+++.|
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--g~~~v-~~~~~~~~~~~~~~~~~~~d~vld~~g  222 (326)
T cd08289         147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK-L--GAKEV-IPREELQEESIKPLEKQRWAGAVDPVG  222 (326)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH-c--CCCEE-EcchhHHHHHHHhhccCCcCEEEECCc
Confidence            5799999999999999999888899999999888776544321 1  22111 122220 22233332224899998876


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      ..              .....++.++..  ++++.++..
T Consensus       223 ~~--------------~~~~~~~~l~~~--G~~i~~g~~  245 (326)
T cd08289         223 GK--------------TLAYLLSTLQYG--GSVAVSGLT  245 (326)
T ss_pred             HH--------------HHHHHHHHhhcC--CEEEEEeec
Confidence            21              123344444444  478887653

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.82  E-value=0.0023  Score=56.47  Aligned_cols=107  Identities=10%  Similarity=0.087  Sum_probs=69.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-e----EEE----eecCchhhhhcc---ccC----CCCeEEEEeeCCCChHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-A----VKA----GVRDLDKAKTTL---SKD----NPSLQIVKADVTEGSAKLS  129 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~----V~~----~~r~~~~~~~~~---~~~----~~~~~~i~~Dl~d~~~~~~  129 (252)
                      --+|.|+|++|.+|.+++-.|+..|. .    |.+    ++++.+..+...   .+.    ..++.+..    +    -.
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~----~----~y  115 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGI----D----PY  115 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEec----C----CH
Confidence            47999999999999999999998763 2    333    355555543211   100    01121111    1    13


Q ss_pred             HHHcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcC-C-CEEEEEc
Q 025456          130 EAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG-V-NRFILIS  181 (252)
Q Consensus       130 ~~~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~-~-~~~v~~S  181 (252)
                      +.+.+ .|+||.+||...  ..+..+.+..|..-...+.+.++++. . .++|.+|
T Consensus       116 ~~~kd-aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs  170 (387)
T TIGR01757       116 EVFED-ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG  170 (387)
T ss_pred             HHhCC-CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence            45777 999999999754  33555667888888899999888743 3 3555555

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.80  E-value=0.0079  Score=52.63  Aligned_cols=109  Identities=25%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCC----CCeE-EEE---ee--CCCChHHHHHHHcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN----PSLQ-IVK---AD--VTEGSAKLSEAIGDDS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~-~i~---~D--l~d~~~~~~~~~~~~~  136 (252)
                      |+|.|.| +|++|.-.+-.|++.||+|++++.++++.+.+..+..    ++++ +++   .+  +.- ..+.++++.+ .
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f-Ttd~~~a~~~-a   77 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF-TTDYEEAVKD-A   77 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE-EcCHHHHHhc-C
Confidence            5788898 6999999999999999999999999988765433211    1110 000   00  111 2335567777 8


Q ss_pred             cEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEcc
Q 025456          137 EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (252)
Q Consensus       137 d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~SS  182 (252)
                      |++|-+.|+....+.    ..++...+.+++...+.-.+ ++|.+=|
T Consensus        78 dv~fIavgTP~~~dg----~aDl~~V~ava~~i~~~~~~~~vvV~KS  120 (414)
T COG1004          78 DVVFIAVGTPPDEDG----SADLSYVEAVAKDIGEILDGKAVVVIKS  120 (414)
T ss_pred             CEEEEEcCCCCCCCC----CccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence            999999987654322    22344444444444433222 5555433

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.80  E-value=0.012  Score=52.78  Aligned_cols=40  Identities=28%  Similarity=0.233  Sum_probs=34.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~  107 (252)
                      ++|.|.|. |.+|..++..|++.|++|++.++++++.+.+.
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~   40 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGHEVTGVDIDQEKVDKLN   40 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCCeEEEEECCHHHHHHhh
Confidence            36889985 99999999999999999999999988766543

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=96.80  E-value=0.0016  Score=58.40  Aligned_cols=108  Identities=15%  Similarity=0.129  Sum_probs=69.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC---CC----eEEEeecC--chhhhhc---ccc----CCCCeEEEEeeCCCChHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK---GF----AVKAGVRD--LDKAKTT---LSK----DNPSLQIVKADVTEGSAKLS  129 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~---G~----~V~~~~r~--~~~~~~~---~~~----~~~~~~~i~~Dl~d~~~~~~  129 (252)
                      -.+|+||||+|.||.+|+-.++.-   |.    .+++++..  .+.++..   +.+    ...++.+. .   +    ..
T Consensus       123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~---~----~~  194 (452)
T cd05295         123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-T---D----LD  194 (452)
T ss_pred             ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-E---C----CH
Confidence            368999999999999999998872   42    25555552  3322210   110    01123222 1   1    23


Q ss_pred             HHHcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCC--CEEEEEcc
Q 025456          130 EAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV--NRFILISS  182 (252)
Q Consensus       130 ~~~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~--~~~v~~SS  182 (252)
                      +.+.+ +|+||..+|...  ..+..+.++.|..-...+.+++.+...  .+++.+.|
T Consensus       195 ea~~d-aDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t  250 (452)
T cd05295         195 VAFKD-AHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR  250 (452)
T ss_pred             HHhCC-CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            56788 999999999754  334556678888888888888877654  46666654

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.79  E-value=0.0062  Score=51.52  Aligned_cols=58  Identities=21%  Similarity=0.283  Sum_probs=46.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++.+++++|+|.++.+|+.++..|+++|..|+++.++.                         ..+.+.+.. .|+||.+
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------------------~~l~~~~~~-ADIVIsA  208 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------------------KDMASYLKD-ADVIVSA  208 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------------------hhHHHHHhh-CCEEEEC
Confidence            57899999999999999999999999999999876532                         124455666 8888888


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      .|..
T Consensus       209 vg~p  212 (286)
T PRK14175        209 VGKP  212 (286)
T ss_pred             CCCC
Confidence            7753

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.78  E-value=0.024  Score=50.10  Aligned_cols=75  Identities=23%  Similarity=0.267  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|.|+ |.+|..+++.+...|.+|++++++.++..+.....  +++.+ .|..+ .+.+.+...+ +|+||.++|
T Consensus       178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l--Ga~~~-i~~~~-~~~v~~~~~~-~D~vid~~G  251 (375)
T PLN02178        178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL--GADSF-LVTTD-SQKMKEAVGT-MDFIIDTVS  251 (375)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC--CCcEE-EcCcC-HHHHHHhhCC-CcEEEECCC
Confidence            4789999986 99999999988888999988887655432222111  22221 23334 3455555566 999999987


Q ss_pred             C
Q 025456          145 F  145 (252)
Q Consensus       145 ~  145 (252)
                      .
T Consensus       252 ~  252 (375)
T PLN02178        252 A  252 (375)
T ss_pred             c
Confidence            3

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=96.78  E-value=0.006  Score=51.70  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC--ChHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d--~~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+++|+|++|.+|..+++.+...|++|+++.++.+..+.. ....  ++. ..|..+  ..+.+.+...+ .+|.+|+
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~g--~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~  214 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RALG--ADV-AINYRTEDFAEEVKEATGGRGVDVILD  214 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHcC--CCE-EEeCCchhHHHHHHHHhCCCCeEEEEE
Confidence            478999999999999999999999999999988876654432 1111  111 123222  02334444432 4999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      ++|.
T Consensus       215 ~~g~  218 (323)
T cd05276         215 MVGG  218 (323)
T ss_pred             CCch
Confidence            9873

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.77  E-value=0.0054  Score=54.38  Aligned_cols=74  Identities=30%  Similarity=0.462  Sum_probs=57.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ++++++++|.|+ |=+|.-++++|.++| .+|+++.|..++..++....+       ++... .+.+.+.+.. .|+||.
T Consensus       175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-------~~~~~-l~el~~~l~~-~DvVis  244 (414)
T COG0373         175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-------AEAVA-LEELLEALAE-ADVVIS  244 (414)
T ss_pred             ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-------Ceeec-HHHHHHhhhh-CCEEEE
Confidence            468899999997 899999999999999 689999999888776543222       33333 4567788888 999999


Q ss_pred             cCCCC
Q 025456          142 ATGFQ  146 (252)
Q Consensus       142 ~ag~~  146 (252)
                      +.|-.
T Consensus       245 sTsa~  249 (414)
T COG0373         245 STSAP  249 (414)
T ss_pred             ecCCC
Confidence            87643

>PRK07877 hypothetical protein; Provisional

Probab=96.76  E-value=0.014  Score=55.59  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=67.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchh---hhh------------------ccccCCC--CeEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDK---AKT------------------TLSKDNP--SLQI  116 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~---~~~------------------~~~~~~~--~~~~  116 (252)
                      ..++..+|+|.|+ | +|++++..|++.|.  ++++++.+.=.   +..                  .+....+  +++.
T Consensus       103 ~~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~  180 (722)
T PRK07877        103 ERLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV  180 (722)
T ss_pred             HHHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence            4567899999999 7 99999999999984  78887765211   100                  0111122  3444


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +...++  .+.+.+.+.+ +|+||.|.-             |+..-..+-++|.+.++ .+|+-++
T Consensus       181 ~~~~i~--~~n~~~~l~~-~DlVvD~~D-------------~~~~R~~ln~~a~~~~i-P~i~~~~  229 (722)
T PRK07877        181 FTDGLT--EDNVDAFLDG-LDVVVEECD-------------SLDVKVLLREAARARRI-PVLMATS  229 (722)
T ss_pred             EeccCC--HHHHHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEcC
Confidence            555554  4668888888 999998863             33334456678888887 5666664

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.75  E-value=0.0093  Score=46.02  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=32.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR   98 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r   98 (252)
                      .++++++|+|.|| |-+|...++.|++.|++|++++.
T Consensus         9 l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719          9 FNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcC
Confidence            4567999999998 99999999999999999998853

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.74  E-value=0.025  Score=49.32  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=28.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDL  100 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~  100 (252)
                      ++|.|+|++|++|+++++.|.+++ .+|..+.++.
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~   35 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASP   35 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEECh
Confidence            479999999999999999998876 5887775443

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.73  E-value=0.021  Score=49.71  Aligned_cols=96  Identities=14%  Similarity=0.165  Sum_probs=59.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--CCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~vi~  141 (252)
                      .+.+|+|+|+ |.+|...++.+...|. +|+++++++++.+...+ .  +++.+ .|..+ . ++.+...  +.+|+||.
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-l--Ga~~v-i~~~~-~-~~~~~~~~~g~~D~vid  241 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-M--GADKL-VNPQN-D-DLDHYKAEKGYFDVSFE  241 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-c--CCcEE-ecCCc-c-cHHHHhccCCCCCEEEE
Confidence            5789999986 9999999988888898 68888888776653322 1  22221 23332 1 1222221  13899999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      ++|..             ......++.++..  ++++.++.
T Consensus       242 ~~G~~-------------~~~~~~~~~l~~~--G~iv~~G~  267 (343)
T PRK09880        242 VSGHP-------------SSINTCLEVTRAK--GVMVQVGM  267 (343)
T ss_pred             CCCCH-------------HHHHHHHHHhhcC--CEEEEEcc
Confidence            98831             1123445555544  47888764

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.73  E-value=0.021  Score=50.00  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=60.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi  140 (252)
                      .+.+|+|.|+ |.+|...++.+...|.+ |+++++++++.+.... .  +++. ..|..++  .+.+.+...+ .+|+||
T Consensus       176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~--Ga~~-~i~~~~~~~~~~i~~~~~~~g~d~vi  250 (358)
T TIGR03451       176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-F--GATH-TVNSSGTDPVEAIRALTGGFGADVVI  250 (358)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c--CCce-EEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence            4789999985 99999999888888985 8888887766543321 1  1211 1233221  2344444442 399999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .+.|..             ......++.++..  +++|.++..
T Consensus       251 d~~g~~-------------~~~~~~~~~~~~~--G~iv~~G~~  278 (358)
T TIGR03451       251 DAVGRP-------------ETYKQAFYARDLA--GTVVLVGVP  278 (358)
T ss_pred             ECCCCH-------------HHHHHHHHHhccC--CEEEEECCC
Confidence            998731             1122334444444  478887753

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=96.71  E-value=0.021  Score=49.01  Aligned_cols=100  Identities=18%  Similarity=0.142  Sum_probs=60.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+++|.|++|.+|..+++.+...|.+|+++.+++++.+.... .  ++..+ .|..+.  .+.+.+...+.+|.||++
T Consensus       139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--g~~~v-~~~~~~~~~~~~~~~~~~~vd~v~~~  214 (329)
T cd08250         139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS-L--GCDRP-INYKTEDLGEVLKKEYPKGVDVVYES  214 (329)
T ss_pred             CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH-c--CCceE-EeCCCccHHHHHHHhcCCCCeEEEEC
Confidence            47899999999999999999888889999998887665443211 1  12111 222220  122332222238999998


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      .|..              .....++.++..  +++|.+++..
T Consensus       215 ~g~~--------------~~~~~~~~l~~~--g~~v~~g~~~  240 (329)
T cd08250         215 VGGE--------------MFDTCVDNLALK--GRLIVIGFIS  240 (329)
T ss_pred             CcHH--------------HHHHHHHHhccC--CeEEEEeccc
Confidence            7621              123344444443  4788887653

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=96.71  E-value=0.0077  Score=51.69  Aligned_cols=100  Identities=16%  Similarity=0.095  Sum_probs=60.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+|+|.|++|.+|..+++.+.+.|.+|+++++++++.+........ -.++  |..+.  .+.+.+...+.+|++|++
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~-~~~~--~~~~~~~~~~v~~~~~~~~d~vi~~  221 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGF-DAAI--NYKTPDLAEALKEAAPDGIDVYFDN  221 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCC-ceEE--ecCChhHHHHHHHhccCCceEEEEc
Confidence            468999999999999999999999999999988877655432210111 1122  22220  223333332249999998


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +|..              .....++.++..  ++++.+++.
T Consensus       222 ~g~~--------------~~~~~~~~l~~~--G~~v~~g~~  246 (329)
T cd05288         222 VGGE--------------ILDAALTLLNKG--GRIALCGAI  246 (329)
T ss_pred             chHH--------------HHHHHHHhcCCC--ceEEEEeec
Confidence            7731              122334444433  478877654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.70  E-value=0.0036  Score=57.07  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=49.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+++++++|+|+ |++|++++..|++.|++|++..|+.++.+.......  ...  .++.+    +. .+.+ +|+||+|
T Consensus       329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~--~~~--~~~~~----~~-~l~~-~DiVIna  397 (477)
T PRK09310        329 PLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ--GKA--FPLES----LP-ELHR-IDIIINC  397 (477)
T ss_pred             CcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cce--echhH----hc-ccCC-CCEEEEc
Confidence            356789999996 899999999999999999999998776554332111  111  12212    11 1455 9999999


Q ss_pred             CCC
Q 025456          143 TGF  145 (252)
Q Consensus       143 ag~  145 (252)
                      ...
T Consensus       398 tP~  400 (477)
T PRK09310        398 LPP  400 (477)
T ss_pred             CCC
Confidence            754

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.70  E-value=0.004  Score=50.06  Aligned_cols=43  Identities=23%  Similarity=0.342  Sum_probs=37.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      .++++|+++|+|. |.+|+++++.|.+.|++|++.+++++....
T Consensus        24 ~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~   66 (200)
T cd01075          24 DSLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAVAR   66 (200)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            3567899999998 799999999999999999998888766544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.66  E-value=0.023  Score=51.33  Aligned_cols=76  Identities=21%  Similarity=0.279  Sum_probs=51.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +.+++++|+|+ |+.|.++++.|+++|++|.+.+...... ...+.....++.+..++..+      ..+.+ .|.||..
T Consensus         3 ~~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~------~~~~~-~d~vv~s   74 (445)
T PRK04308          3 FQNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKD------ALDNG-FDILALS   74 (445)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCH------HHHhC-CCEEEEC
Confidence            35789999997 6999999999999999999988654321 11121111356655543221      13356 8999999


Q ss_pred             CCCCC
Q 025456          143 TGFQP  147 (252)
Q Consensus       143 ag~~~  147 (252)
                      .|+.+
T Consensus        75 pgi~~   79 (445)
T PRK04308         75 PGISE   79 (445)
T ss_pred             CCCCC
Confidence            88864

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.64  E-value=0.021  Score=52.10  Aligned_cols=74  Identities=22%  Similarity=0.324  Sum_probs=51.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ..+++|+|.|. |+.|.++++.|++.|++|.+.+++.....+.+.  ..++.++.++-.  .    +.+.+ +|.||...
T Consensus        13 ~~~~~v~v~G~-G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~--~~gi~~~~~~~~--~----~~~~~-~d~vV~Sp   82 (473)
T PRK00141         13 ELSGRVLVAGA-GVSGRGIAAMLSELGCDVVVADDNETARHKLIE--VTGVADISTAEA--S----DQLDS-FSLVVTSP   82 (473)
T ss_pred             ccCCeEEEEcc-CHHHHHHHHHHHHCCCEEEEECCChHHHHHHHH--hcCcEEEeCCCc--h----hHhcC-CCEEEeCC
Confidence            35789999995 999999999999999999998876554332221  125555543211  1    23456 89999998


Q ss_pred             CCCC
Q 025456          144 GFQP  147 (252)
Q Consensus       144 g~~~  147 (252)
                      |+..
T Consensus        83 gi~~   86 (473)
T PRK00141         83 GWRP   86 (473)
T ss_pred             CCCC
Confidence            8764

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.63  E-value=0.016  Score=44.69  Aligned_cols=71  Identities=28%  Similarity=0.368  Sum_probs=46.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ..+.+|+++|+|= |.+|+.+++.|...|.+|++...+|-+.-+...   +++++.     .    +.+++.. .|++|.
T Consensus        19 ~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~---dGf~v~-----~----~~~a~~~-adi~vt   84 (162)
T PF00670_consen   19 LMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAAM---DGFEVM-----T----LEEALRD-ADIFVT   84 (162)
T ss_dssp             S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH---TT-EEE----------HHHHTTT--SEEEE
T ss_pred             eeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhhh---cCcEec-----C----HHHHHhh-CCEEEE
Confidence            3457999999995 999999999999999999999998865533221   344432     1    4456677 899998


Q ss_pred             cCCCC
Q 025456          142 ATGFQ  146 (252)
Q Consensus       142 ~ag~~  146 (252)
                      +.|..
T Consensus        85 aTG~~   89 (162)
T PF00670_consen   85 ATGNK   89 (162)
T ss_dssp             -SSSS
T ss_pred             CCCCc
Confidence            88753

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=96.62  E-value=0.036  Score=47.00  Aligned_cols=104  Identities=17%  Similarity=0.302  Sum_probs=64.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc----------------------cccCCCCeE--EE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSKDNPSLQ--IV  117 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~----------------------~~~~~~~~~--~i  117 (252)
                      .++..+|+|.|+ |++|.++++.|+..|. +|++++.+.-...++                      +....+.+.  .+
T Consensus        16 kL~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~   94 (286)
T cd01491          16 KLQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS   94 (286)
T ss_pred             HHhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence            345789999997 8999999999999996 577766543111111                      111122222  22


Q ss_pred             EeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeecc
Q 025456          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA  188 (252)
Q Consensus       118 ~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~  188 (252)
                      ..++      ..+.+.+ +|+||.+..             |......+-++|++.++ .||...+.+.+|.
T Consensus        95 ~~~~------~~~~l~~-fdvVV~~~~-------------~~~~~~~in~~c~~~~i-pfI~a~~~G~~G~  144 (286)
T cd01491          95 TGPL------TTDELLK-FQVVVLTDA-------------SLEDQLKINEFCHSPGI-KFISADTRGLFGS  144 (286)
T ss_pred             eccC------CHHHHhc-CCEEEEecC-------------CHHHHHHHHHHHHHcCC-EEEEEeccccEEE
Confidence            2221      1234556 787776642             33445567788999887 7888887766553

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.61  E-value=0.027  Score=49.57  Aligned_cols=99  Identities=15%  Similarity=0.091  Sum_probs=59.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCC--ChHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d--~~~~~~~~~~~~~d~vi~  141 (252)
                      .+.+|+|.|+ |.+|..+++.+...|. +|+++++++++.+.... .  +++. ..|..+  ..+.+.+...+.+|+||.
T Consensus       191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~-~--Ga~~-~i~~~~~~~~~~i~~~~~~g~d~vid  265 (371)
T cd08281         191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-L--GATA-TVNAGDPNAVEQVRELTGGGVDYAFE  265 (371)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-c--CCce-EeCCCchhHHHHHHHHhCCCCCEEEE
Confidence            4789999985 9999999888888898 68888888766543221 1  2221 123222  123344443324899999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +.|..             ......++.++..  ++++.++..
T Consensus       266 ~~G~~-------------~~~~~~~~~l~~~--G~iv~~G~~  292 (371)
T cd08281         266 MAGSV-------------PALETAYEITRRG--GTTVTAGLP  292 (371)
T ss_pred             CCCCh-------------HHHHHHHHHHhcC--CEEEEEccC
Confidence            98732             1223344555544  478877643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.59  E-value=0.032  Score=48.47  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC---CeEEEeecC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRD   99 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~   99 (252)
                      +.++|.|.||||++|..+++.|.++.   .++..+...
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~   40 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE   40 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence            46799999999999999999999843   366655443

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.59  E-value=0.0035  Score=50.21  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~  102 (252)
                      |++.|. |+|-||..++++|++.|++|++..|+.++
T Consensus         2 ~~~~i~-GtGniG~alA~~~a~ag~eV~igs~r~~~   36 (211)
T COG2085           2 MIIAII-GTGNIGSALALRLAKAGHEVIIGSSRGPK   36 (211)
T ss_pred             cEEEEe-ccChHHHHHHHHHHhCCCeEEEecCCChh
Confidence            455554 57999999999999999999998666544

>PRK06849 hypothetical protein; Provisional

Probab=96.57  E-value=0.009  Score=53.03  Aligned_cols=38  Identities=13%  Similarity=0.173  Sum_probs=34.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~  102 (252)
                      +.|+|||||+...+|..+++.|.+.|++|++++.++..
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~   40 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP   40 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            46999999999999999999999999999999887643

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.56  E-value=0.0078  Score=47.43  Aligned_cols=71  Identities=17%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ..+.+++|.|.|. |.||+++++.|..-|.+|++.+|..........   ..+     .    ..++++.+.. .|+|+.
T Consensus        32 ~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~---~~~-----~----~~~l~ell~~-aDiv~~   97 (178)
T PF02826_consen   32 RELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE---FGV-----E----YVSLDELLAQ-ADIVSL   97 (178)
T ss_dssp             S-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH---TTE-----E----ESSHHHHHHH--SEEEE
T ss_pred             cccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhhhccc---ccc-----e----eeehhhhcch-hhhhhh
Confidence            3457999999995 999999999999999999999998875431110   111     1    2235667777 898888


Q ss_pred             cCCCC
Q 025456          142 ATGFQ  146 (252)
Q Consensus       142 ~ag~~  146 (252)
                      +....
T Consensus        98 ~~plt  102 (178)
T PF02826_consen   98 HLPLT  102 (178)
T ss_dssp             -SSSS
T ss_pred             hhccc
Confidence            76543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.55  E-value=0.034  Score=48.09  Aligned_cols=98  Identities=15%  Similarity=0.196  Sum_probs=60.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCchhhhhccccCCCCeEEEEeeCCCC-hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+|+|+|+ |.+|..+++.+...|.+ |+++++++++.+.... .  +++. ..|..+. .+.+.+...+ .+|+||.
T Consensus       163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~-~--ga~~-~i~~~~~~~~~~~~~~~~~~~d~vid  237 (339)
T cd08239         163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELAKA-L--GADF-VINSGQDDVQEIRELTSGAGADVAIE  237 (339)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h--CCCE-EEcCCcchHHHHHHHhCCCCCCEEEE
Confidence            4789999986 99999999988888988 9988887766543221 1  1221 1233221 2334444443 4999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +.|...             .....++.++..  ++++.++.
T Consensus       238 ~~g~~~-------------~~~~~~~~l~~~--G~~v~~g~  263 (339)
T cd08239         238 CSGNTA-------------ARRLALEAVRPW--GRLVLVGE  263 (339)
T ss_pred             CCCCHH-------------HHHHHHHHhhcC--CEEEEEcC
Confidence            987321             112344545544  37877765

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.55  E-value=0.0085  Score=51.39  Aligned_cols=74  Identities=24%  Similarity=0.291  Sum_probs=53.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC-----hHHHHHHHcCCCcEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-----SAKLSEAIGDDSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-----~~~~~~~~~~~~d~vi  140 (252)
                      +++|.|.|+ |--|.+|+..|++.|++|++..|+++...+... ...+.++.. ++.-+     ..++.+++++ .|.|+
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~-~~~N~~yLp-~i~lp~~l~at~Dl~~a~~~-ad~iv   76 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINE-TRENPKYLP-GILLPPNLKATTDLAEALDG-ADIIV   76 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHh-cCcCccccC-CccCCcccccccCHHHHHhc-CCEEE
Confidence            368999997 899999999999999999999999887766443 223344443 22221     3457777777 88777


Q ss_pred             EcC
Q 025456          141 CAT  143 (252)
Q Consensus       141 ~~a  143 (252)
                      ...
T Consensus        77 ~av   79 (329)
T COG0240          77 IAV   79 (329)
T ss_pred             EEC
Confidence            654

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=96.54  E-value=0.038  Score=49.54  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC------eEEEeecCchhhhhc----------------------cccCCCC--eEEE
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF------AVKAGVRDLDKAKTT----------------------LSKDNPS--LQIV  117 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~------~V~~~~r~~~~~~~~----------------------~~~~~~~--~~~i  117 (252)
                      +|+|.|+ |++|.++++.|+..|.      ++++++.+.=....+                      +....+.  ++.+
T Consensus         1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~   79 (435)
T cd01490           1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL   79 (435)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence            5889996 9999999999999987      788777653211110                      0001122  3333


Q ss_pred             EeeCCCChHH-H-HHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceee
Q 025456          118 KADVTEGSAK-L-SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (252)
Q Consensus       118 ~~Dl~d~~~~-~-~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~  186 (252)
                      ...+..+.+. + .+.+.+ +|+||++.-             |+..-..+-+.|...++ .+|..++.+.+
T Consensus        80 ~~~v~~~~~~~~~~~f~~~-~DvVi~alD-------------n~~aR~~vn~~C~~~~i-Pli~~gt~G~~  135 (435)
T cd01490          80 QNRVGPETEHIFNDEFWEK-LDGVANALD-------------NVDARMYVDRRCVYYRK-PLLESGTLGTK  135 (435)
T ss_pred             ecccChhhhhhhhHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHhCC-CEEEEecccce
Confidence            3333220011 1 234455 777776642             45556678888888886 57777665543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.54  E-value=0.014  Score=49.72  Aligned_cols=78  Identities=19%  Similarity=0.249  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~a  143 (252)
                      ++.+++|+|++|.+|..+++.+...|++|++++++.++.+.... ... -.++..+..+..+.+.+...+ .+|.+++++
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  221 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA-LGA-AHVIVTDEEDLVAEVLRITGGKGVDVVFDPV  221 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-cCC-CEEEecCCccHHHHHHHHhCCCCceEEEECC
Confidence            46799999999999999999999999999999888765543321 111 122222211212334444432 499999987


Q ss_pred             C
Q 025456          144 G  144 (252)
Q Consensus       144 g  144 (252)
                      |
T Consensus       222 ~  222 (328)
T cd08268         222 G  222 (328)
T ss_pred             c
Confidence            7

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.54  E-value=0.0036  Score=43.76  Aligned_cols=66  Identities=29%  Similarity=0.346  Sum_probs=44.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC---CeEEEe-ecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKG---FAVKAG-VRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G---~~V~~~-~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ++.|.| +|-+|.+|++.|++.|   ++|.+. .|++++..+.....  ++.+...|       ..++++. .|+||.+.
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~-advvilav   69 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY--GVQATADD-------NEEAAQE-ADVVILAV   69 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC--TTEEESEE-------HHHHHHH-TSEEEE-S
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh--ccccccCC-------hHHhhcc-CCEEEEEE
Confidence            467775 6999999999999999   899965 89988776654322  22332222       2334555 89999886


Q ss_pred             C
Q 025456          144 G  144 (252)
Q Consensus       144 g  144 (252)
                      -
T Consensus        70 ~   70 (96)
T PF03807_consen   70 K   70 (96)
T ss_dssp             -
T ss_pred             C
Confidence            4

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.53  E-value=0.023  Score=51.75  Aligned_cols=115  Identities=14%  Similarity=0.060  Sum_probs=65.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccccCC----CCeEEE----Eee-CCCChHHHHHHHcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDN----PSLQIV----KAD-VTEGSAKLSEAIGD  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~----~~~~~i----~~D-l~d~~~~~~~~~~~  134 (252)
                      +|+|.|.| .|++|..++-.|++.|  ++|++++.++++.+.+..+..    +++.-+    ... ++- ..++.+++.+
T Consensus         1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i~~   78 (473)
T PLN02353          1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHVAE   78 (473)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHHhc
Confidence            46799997 4999999999999884  789999999888766433210    111000    000 100 1223445666


Q ss_pred             CCcEEEEcCCCCCCCCC-CCcceehHHHHHHHHHHHHhc-CCCEEEEEccc
Q 025456          135 DSEAVVCATGFQPGWDL-FAPWKVDNFGTVNLVEACRKR-GVNRFILISSI  183 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~~~-~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~  183 (252)
                       .|++|-|.++....+- ...-..++.....+++.+.+. .-+.+|.+.|.
T Consensus        79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST  128 (473)
T PLN02353         79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST  128 (473)
T ss_pred             -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence             9999999986543221 111233454455555544332 22356555554

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.53  E-value=0.013  Score=52.51  Aligned_cols=39  Identities=31%  Similarity=0.277  Sum_probs=35.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA  103 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~  103 (252)
                      +.+++|+|+|. |.||+.+++.|...|.+|++.++++.+.
T Consensus       210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra  248 (425)
T PRK05476        210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICA  248 (425)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence            46899999996 9999999999999999999998887654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.51  E-value=0.036  Score=46.76  Aligned_cols=99  Identities=19%  Similarity=0.189  Sum_probs=58.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~  142 (252)
                      .+.+|+|.|+ |.+|...++.+...|.+ |+++++++++.+.... .  +++.+ .|..+..+.+.+...+ .+|+||.+
T Consensus       120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~-~--Ga~~~-i~~~~~~~~~~~~~~~~g~d~vid~  194 (280)
T TIGR03366       120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRRELALS-F--GATAL-AEPEVLAERQGGLQNGRGVDVALEF  194 (280)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-c--CCcEe-cCchhhHHHHHHHhCCCCCCEEEEC
Confidence            5789999986 89999998888788986 8877777665443221 1  12111 1222212333333332 38999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .|...             .....++.++..  ++++.++..
T Consensus       195 ~G~~~-------------~~~~~~~~l~~~--G~iv~~G~~  220 (280)
T TIGR03366       195 SGATA-------------AVRACLESLDVG--GTAVLAGSV  220 (280)
T ss_pred             CCChH-------------HHHHHHHHhcCC--CEEEEeccC
Confidence            87321             123344444443  478887753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.50  E-value=0.027  Score=48.37  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=27.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeec
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVR   98 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r   98 (252)
                      +.+|.|.||||++|..+++.|.++.+ ++..+..
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s   35 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPE   35 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEec
Confidence            57899999999999999999999874 5555443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.47  E-value=0.0098  Score=52.57  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=32.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      ..++|.|.||.|.+|..+++.|.+.|++|++.+|+.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            458999999999999999999999999999998753

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.47  E-value=0.0093  Score=51.06  Aligned_cols=104  Identities=19%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc---cccC----CCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT---LSKD----NPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~---~~~~----~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      |.|.|+ |.+|..++..|+.+|. +|++++++++.....   +...    .....+ .  .+.  + . +.+.+ .|+||
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I-~--~t~--d-~-~~l~d-ADiVI   71 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV-T--GTN--D-Y-EDIAG-SDVVV   71 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE-E--EcC--C-H-HHhCC-CCEEE
Confidence            468998 9999999999998876 999999987643211   1000    011111 1  111  1 2 34678 99999


Q ss_pred             EcCCCCCCCC--CCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          141 CATGFQPGWD--LFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       141 ~~ag~~~~~~--~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .++|.....+  ..+.+.-|+.-.+.+++.+.+...+ .+|.+|
T Consensus        72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s  115 (300)
T cd01339          72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT  115 (300)
T ss_pred             EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9998754322  2233455777777777777766543 444544

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.44  E-value=0.014  Score=51.61  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      +++|+|.|| |.+|+.++..+.+.|++|++++.+++.......     -..+.+|..| .+.+.+.... +|+|.
T Consensus         2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~a-----d~~~~~~~~D-~~~l~~~a~~-~dvit   68 (372)
T PRK06019          2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVA-----DEVIVADYDD-VAALRELAEQ-CDVIT   68 (372)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhC-----ceEEecCCCC-HHHHHHHHhc-CCEEE
Confidence            578999998 799999999999999999999877654322111     1345578877 8888888887 88775

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=96.44  E-value=0.14  Score=43.25  Aligned_cols=108  Identities=17%  Similarity=0.108  Sum_probs=68.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC---hHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG---SAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~---~~~~~~~~~~~~d~vi~  141 (252)
                      ++++|+|-||+|-+|+-+-+...-.|+.|++.+-+.++..-+....+-..   ..|.-++   ...+.+.+...+|+.|.
T Consensus       153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~---afNYK~e~~~~~aL~r~~P~GIDiYfe  229 (343)
T KOG1196|consen  153 KGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDD---AFNYKEESDLSAALKRCFPEGIDIYFE  229 (343)
T ss_pred             CCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCcc---ceeccCccCHHHHHHHhCCCcceEEEe
Confidence            57999999999999996665555579999999888776554332111110   1222221   23444444334999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCC
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG  191 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~  191 (252)
                      |.|-.              ....++..++.++  |++.-+-++.|.....
T Consensus       230 NVGG~--------------~lDavl~nM~~~g--ri~~CG~ISqYN~~~~  263 (343)
T KOG1196|consen  230 NVGGK--------------MLDAVLLNMNLHG--RIAVCGMISQYNLENP  263 (343)
T ss_pred             ccCcH--------------HHHHHHHhhhhcc--ceEeeeeehhccccCC
Confidence            98742              1234555666665  8888887777765433

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=96.44  E-value=0.015  Score=49.71  Aligned_cols=76  Identities=20%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC--ChHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d--~~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+++|.||+|.+|..+++.+...|.+|+++.++.++.+.... .  +++.+ .+..+  ..+.+.+...+ .+|+||+
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~--g~~~~-~~~~~~~~~~~i~~~~~~~~~d~v~d  214 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA-L--GIGPV-VSTEQPGWQDKVREAAGGAPISVALD  214 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh-c--CCCEE-EcCCCchHHHHHHHHhCCCCCcEEEE
Confidence            47899999999999999999888899999998887765544322 1  22211 12222  02334445443 4999999


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      +.|
T Consensus       215 ~~g  217 (324)
T cd08292         215 SVG  217 (324)
T ss_pred             CCC
Confidence            887

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.44  E-value=0.017  Score=44.65  Aligned_cols=58  Identities=29%  Similarity=0.365  Sum_probs=40.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++.+|+++|.|.+..+|+.++..|.++|..|++.....                         .++++.+.. .|+||.+
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------------------~~l~~~~~~-ADIVVsa   86 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------------------KNLQEITRR-ADIVVSA   86 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------------------SSHHHHHTT-SSEEEE-
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------------------Ccccceeee-ccEEeee
Confidence            46799999999999999999999999999998754332                         123445555 7788877


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      +|..
T Consensus        87 ~G~~   90 (160)
T PF02882_consen   87 VGKP   90 (160)
T ss_dssp             SSST
T ss_pred             eccc
Confidence            7754

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=96.44  E-value=0.015  Score=49.46  Aligned_cols=76  Identities=13%  Similarity=0.164  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC--ChHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d--~~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+++|+|++|.+|..+++.+...|++|+++.++.+..+.. ...  ++..+ .+..+  ..+.+.+...+ .+|.+|+
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~--g~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~  214 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL--GADIA-INYREEDFVEVVKAETGGKGVDVILD  214 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc--CCcEE-EecCchhHHHHHHHHcCCCCeEEEEE
Confidence            478999999999999999998889999999988877654422 211  12111 12222  01333333332 4999999


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      ++|
T Consensus       215 ~~~  217 (325)
T TIGR02824       215 IVG  217 (325)
T ss_pred             CCc
Confidence            887

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.43  E-value=0.037  Score=48.27  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC-CCe---EEEeecC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK-GFA---VKAGVRD   99 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~-G~~---V~~~~r~   99 (252)
                      ..+|.|.||||++|+.+++.|.++ ..+   +..+...
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~   42 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK   42 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc
Confidence            579999999999999999999964 455   5555433

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=96.42  E-value=0.017  Score=45.87  Aligned_cols=80  Identities=16%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +++||+|+|.|-+.-+|+-++..|+++|+.|++...+.....   . .............|.+..+.+.+.. .|+||.+
T Consensus        59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~---~-~~~~~~hs~t~~~~~~~~l~~~~~~-ADIVIsA  133 (197)
T cd01079          59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVF---T-RGESIRHEKHHVTDEEAMTLDCLSQ-SDVVITG  133 (197)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccc---c-cccccccccccccchhhHHHHHhhh-CCEEEEc
Confidence            567999999999999999999999999999998754332110   0 0000000011111212346677777 9999999


Q ss_pred             CCCCC
Q 025456          143 TGFQP  147 (252)
Q Consensus       143 ag~~~  147 (252)
                      +|...
T Consensus       134 vG~~~  138 (197)
T cd01079         134 VPSPN  138 (197)
T ss_pred             cCCCC
Confidence            88643

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.40  E-value=0.018  Score=51.41  Aligned_cols=68  Identities=25%  Similarity=0.267  Sum_probs=48.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ..+++|+|.|+ |.||..+++.+...|.+|+++++++.+......   .+++.+     + .   .+.+.+ .|+||.+.
T Consensus       200 l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~---~G~~~~-----~-~---~e~v~~-aDVVI~at  265 (413)
T cd00401         200 IAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAM---EGYEVM-----T-M---EEAVKE-GDIFVTTT  265 (413)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh---cCCEEc-----c-H---HHHHcC-CCEEEECC
Confidence            46899999997 899999999999999999998888766543221   223222     2 1   234556 88888877


Q ss_pred             CC
Q 025456          144 GF  145 (252)
Q Consensus       144 g~  145 (252)
                      |.
T Consensus       266 G~  267 (413)
T cd00401         266 GN  267 (413)
T ss_pred             CC
Confidence            63

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=96.40  E-value=0.018  Score=49.20  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+++|+|++|.+|..+++.+...|.+|++++++.++.+.. ...  ++.. ..|..+.  .+.+.+...+ .+|.|++
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~d~vl~  217 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RAL--GADV-AVDYTRPDWPDQVREALGGGGVTVVLD  217 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc--CCCE-EEecCCccHHHHHHHHcCCCCceEEEE
Confidence            468999999999999999998889999999998887665432 211  1211 1232221  2334444443 4999999


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      +.|
T Consensus       218 ~~g  220 (324)
T cd08244         218 GVG  220 (324)
T ss_pred             CCC
Confidence            976

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=96.37  E-value=0.01  Score=50.11  Aligned_cols=106  Identities=15%  Similarity=0.109  Sum_probs=66.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+|+|.||+|-+|+-+.+...-+|++|+.+.-.+++.+-+...  .+..+.+..-|+   .+.+.++..+.+|+.|-|
T Consensus       150 ~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~---~~~L~~a~P~GIDvyfeN  226 (340)
T COG2130         150 AGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDF---AQALKEACPKGIDVYFEN  226 (340)
T ss_pred             CCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccH---HHHHHHHCCCCeEEEEEc
Confidence            589999999999999976665555799999999888776543321  122222222222   345555554349999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccC
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA  189 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~  189 (252)
                      .|-..              ...++..++..  .||+..+-++-|...
T Consensus       227 VGg~v--------------~DAv~~~ln~~--aRi~~CG~IS~YN~~  257 (340)
T COG2130         227 VGGEV--------------LDAVLPLLNLF--ARIPVCGAISQYNAP  257 (340)
T ss_pred             CCchH--------------HHHHHHhhccc--cceeeeeehhhcCCC
Confidence            87421              01122222222  488888888777665

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.35  E-value=0.054  Score=49.49  Aligned_cols=73  Identities=23%  Similarity=0.289  Sum_probs=50.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-h---hccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-K---TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      .++++|+|.|+ |++|..+++.|.++|++|++++++.... .   +.+.  ..+++++.++-.   .    ...+ +|.|
T Consensus        14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~--~~gv~~~~~~~~---~----~~~~-~D~V   82 (480)
T PRK01438         14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILE--ALGATVRLGPGP---T----LPED-TDLV   82 (480)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHH--HcCCEEEECCCc---c----ccCC-CCEE
Confidence            35789999997 8999999999999999999988654321 1   1121  235666554321   1    2334 8999


Q ss_pred             EEcCCCCC
Q 025456          140 VCATGFQP  147 (252)
Q Consensus       140 i~~ag~~~  147 (252)
                      |...|+.+
T Consensus        83 v~s~Gi~~   90 (480)
T PRK01438         83 VTSPGWRP   90 (480)
T ss_pred             EECCCcCC
Confidence            99988765

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.34  E-value=0.0095  Score=51.34  Aligned_cols=39  Identities=36%  Similarity=0.384  Sum_probs=33.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      |++|.|.|+ |.+|..++..|++.|++|.+.+|+++..+.
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~   39 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGHDVTLWARDPEQAAE   39 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            368999996 999999999999999999999998766543

>PRK06153 hypothetical protein; Provisional

Probab=96.34  E-value=0.053  Score=47.72  Aligned_cols=99  Identities=12%  Similarity=0.144  Sum_probs=60.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhh------------hh-------------ccccCCCCeEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKA------------KT-------------TLSKDNPSLQI  116 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~------------~~-------------~~~~~~~~~~~  116 (252)
                      .+++.+|+|.|+ |++|++++..|++.|. ++++++.+.=..            ++             .+.....++..
T Consensus       173 kL~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~  251 (393)
T PRK06153        173 KLEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP  251 (393)
T ss_pred             HHhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence            456789999997 9999999999999985 677766541000            00             00001223444


Q ss_pred             EEeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEE
Q 025456          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (252)
Q Consensus       117 i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~  180 (252)
                      +...+ + ++.+. .+.+ +|+||.|..             |..+-..+.++|.+.+++ +|.+
T Consensus       252 ~~~~I-~-~~n~~-~L~~-~DiV~dcvD-------------n~~aR~~ln~~a~~~gIP-~Id~  297 (393)
T PRK06153        252 HPEYI-D-EDNVD-ELDG-FTFVFVCVD-------------KGSSRKLIVDYLEALGIP-FIDV  297 (393)
T ss_pred             EeecC-C-HHHHH-HhcC-CCEEEEcCC-------------CHHHHHHHHHHHHHcCCC-EEEe
Confidence            44445 3 34443 5667 899998875             333445566777777753 4443

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=96.34  E-value=0.022  Score=48.46  Aligned_cols=76  Identities=21%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+++|.|++|.+|..+++.+...|.+|+++.+++++.+.... .  +++.+..+-.+..+.+.+. ++.+|.++++.|
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~~  217 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE-L--GADEVVIDDGAIAEQLRAA-PGGFDKVLELVG  217 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c--CCcEEEecCccHHHHHHHh-CCCceEEEECCC
Confidence            47899999999999999999888999999998888765543321 1  2222211211112334444 335999999876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.33  E-value=0.04  Score=48.94  Aligned_cols=38  Identities=21%  Similarity=0.049  Sum_probs=31.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~  107 (252)
                      +|.|.| .|++|..++..|+ .|++|++.++++++.+.+.
T Consensus         2 kI~VIG-lGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~   39 (388)
T PRK15057          2 KITISG-TGYVGLSNGLLIA-QNHEVVALDILPSRVAMLN   39 (388)
T ss_pred             EEEEEC-CCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHH
Confidence            688887 5999999997666 5999999999998876544

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.031  Score=47.35  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=28.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRD   99 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   99 (252)
                      .++.-|+|.|+ |++|++++..|++-|. ++.+++.+
T Consensus        72 l~~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfd  107 (430)
T KOG2018|consen   72 LTNSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFD  107 (430)
T ss_pred             hcCcEEEEEec-CchhHHHHHHHHHhcCceEEEechh
Confidence            45678899997 9999999999999997 46666554

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.32  E-value=0.045  Score=49.51  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=29.4

Q ss_pred             CcEEE----EEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           66 QKKIF----VAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        66 ~~~vl----VtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      +..++    |+||+|++|.++++.|...|++|+...+.+.
T Consensus        34 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~   73 (450)
T PRK08261         34 GQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGL   73 (450)
T ss_pred             CCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCcccc
Confidence            34555    7888999999999999999999998765543

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.30  E-value=0.021  Score=43.14  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=32.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR   98 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r   98 (252)
                      ++++++|.|.|.+.-+|..++..|.++|..|++..+
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~   60 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW   60 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence            457999999999999999999999999999988754

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.28  E-value=0.043  Score=46.98  Aligned_cols=31  Identities=26%  Similarity=0.458  Sum_probs=25.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC-eEEEee
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGV   97 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~   97 (252)
                      .+|.|.||+|+.|..+++.|+++.+ ++..+.
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~   33 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIA   33 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEe
Confidence            4799999999999999999999863 555543

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.26  E-value=0.057  Score=47.02  Aligned_cols=40  Identities=35%  Similarity=0.335  Sum_probs=34.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      .+.+|+|.|+ |.+|...++.+...|.+|+++++++++.+.
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~  205 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEM  205 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence            4789999999 999999999888889999998888776653

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.25  E-value=0.067  Score=47.06  Aligned_cols=76  Identities=11%  Similarity=-0.003  Sum_probs=48.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC----hHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG----SAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~----~~~~~~~~~~~~d~v  139 (252)
                      .+.+|+|+|+ |.+|...++.+...|. +|+++++++++.+.... .  +++. ..|..+.    .+.+.+...+.+|++
T Consensus       185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~-~--Ga~~-~i~~~~~~~~~~~~v~~~~~~g~d~v  259 (368)
T TIGR02818       185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELAKK-L--GATD-CVNPNDYDKPIQEVIVEITDGGVDYS  259 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-h--CCCe-EEcccccchhHHHHHHHHhCCCCCEE
Confidence            4789999985 9999999888888898 79988888766543321 1  1211 1232220    133444433239999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |.++|.
T Consensus       260 id~~G~  265 (368)
T TIGR02818       260 FECIGN  265 (368)
T ss_pred             EECCCC
Confidence            999873

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
3e8x_A	236	Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BA		2e-12
3dqp_A	219	Crystal Structure Of The Oxidoreductase Ylbe From L		8e-11
2q1w_A	333	Crystal Structure Of The Bordetella Bronchiseptica		3e-08
3dhn_A	227	Crystal Structure Of The Putative Epimerase Q89z24_		2e-06
1hdo_A	206	Human Biliverdin Ix Beta Reductase: Nadp Complex Le		8e-06
1xq6_A	253	X-ray Structure Of Gene Product From Arabidopsis Th		5e-05
2rh8_A	338	Structure Of Apo Anthocyanidin Reductase From Vitis		8e-04

>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS HALODURANS Length = 236

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 15/185 (8%)
Query: 60  ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA 119
           EN+  +  ++ V GA G   + ++ +L  KG    A VR+ ++      ++  +  IV A
Sbjct: 15  ENLYFQGXRVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGPEL--RERGASDIVVA 72
Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
           ++ E  +    +I    +AVV A G  P         +D +G +  ++   KRG+ RFI 
Sbjct: 73  NLEEDFSHAFASI----DAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIX 128
Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPT 239
           +SS+       G      Y         L+AK  A+  +++S ++YTI+RPG L NE  T
Sbjct: 129 VSSVGTVDPDQGPXNXRHY---------LVAKRLADDELKRSSLDYTIVRPGPLSNEEST 179
Query: 240 GNIIM 244
           G + +
Sbjct: 180 GKVTV 184

>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From Lactococcus Lactis, Northeast Structural Genomics Consortium Target Kr121 Length = 219

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 34/193 (17%)
Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA---DVT-- 122
           KIF+ G+TG  GK +++ L    + + AG R +++         P    VKA   DV   
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV--------PQYNNVKAVHFDVDWT 53
Query: 123 -EGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS 181
            E  AK  +  G D+   V  +G   G  L    KVD +G V L +A  K  V RFIL+S
Sbjct: 54  PEEXAK--QLHGXDAIINVSGSG---GKSLL---KVDLYGAVKLXQAAEKAEVKRFILLS 105
Query: 182 SILVNGAAMGQILNPAYIF---LNVFGLTLIAKLQAEQYI-RKSGINYTIIRPGGLRNEP 237
           +I          L P        +      IAK  A+ Y+ +++ ++YTII+PG L  E 
Sbjct: 106 TIFS--------LQPEKWIGAGFDALKDYYIAKHFADLYLTKETNLDYTIIQPGALTEEE 157
Query: 238 PTGNIIMETEVRA 250
            TG I +  EV A
Sbjct: 158 ATGLIDINDEVSA 170

>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           KK+F+ G  G  G  I E LL +G  V  G+ +    +    KD+P+L  V+  + +  A
Sbjct: 22  KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKDHPNLTFVEGSIAD-HA 79
Query: 127 KLSEAIGD-DSEAVV-CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
            +++ IGD   +AVV  A  ++   D +     +  G  N+V+A +K  V RF+   + L
Sbjct: 80  LVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTAL 139
Query: 185 VNGAA-------MGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 229
             G         +    NPA           I+K   E Y+  SG+++   R
Sbjct: 140 CYGVKPIQQPVRLDHPRNPAN------SSYAISKSANEDYLEYSGLDFVTFR 185

>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Consortium Target Btr310 Length = 227

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K KKI + GA+G  G  ++ + L +GF V A VR  +K K     +N  L++ KADV+  
Sbjct: 3   KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI----ENEHLKVKKADVSSL 58
Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNL--VEACRKRGVNRFILI 180
                   G D  AV+ A  F PGW+   P   D    V L  ++  +K GVNRF+ +
Sbjct: 59  DEVCEVCKGAD--AVISA--FNPGWN--NPDIYDETIKVYLTIIDGVKKAGVNRFLXV 110

>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex Length = 206

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP-SLQIVKADVTEGS 125
           KKI + GATG +G   + Q +  G+ V   VRD     + L  + P    +V  DV + +
Sbjct: 4   KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD----SSRLPSEGPRPAHVVVGDVLQAA 59
Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
                  G D+  V+  T      +  +P  V + G  N+V A +  GV++ +  +S  +
Sbjct: 60  DVDKTVAGQDAVIVLLGT-----RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL 114
Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
                  + +P  +   +  +T    ++  + +R+SG+ Y  + P  + ++P TG
Sbjct: 115 -------LWDPTKVPPRLQAVT-DDHIRMHKVLRESGLKYVAVMPPHIGDQPLTG 161

>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana At5g02240 Length = 253

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 34/188 (18%)
Query: 69  IFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
           + V GA+G +G +IV + L +G   F  K  VR    +     K      +   D+T+  
Sbjct: 7   VLVTGASGRTG-QIVYKKLKEGSDKFVAKGLVR----SAQGKEKIGGEADVFIGDITDAD 61
Query: 126 AKLSEAIGDDSEAVVCAT--GFQPGWD---------LFA----PWKVDNFGTVNLVEACR 170
           +      G D+  ++ +     +PG+D         +F     P +VD  G  N ++A +
Sbjct: 62  SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 121
Query: 171 KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL--TLIAKLQAEQYIRKSGINYTII 228
             GV   +++ S       MG   NP +  LN  G    L+ K +AEQY+  SG  YTII
Sbjct: 122 VAGVKHIVVVGS-------MGGT-NPDHP-LNKLGNGNILVWKRKAEQYLADSGTPYTII 172
Query: 229 RPGGLRNE 236
           R GGL ++
Sbjct: 173 RAGGLLDK 180

>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis Vinifera Length = 338

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 64  VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKA 119
           + +K   V G TG     +V+ LL KG+AV   VRD D  K        ++   L+I +A
Sbjct: 7   IGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRA 66
Query: 120 DVT-EGSAKLSEAIGDDSEAVVCATGF---QPGWDLFAPWKVDNFGTVNLVEAC-RKRGV 174
           D+T E S +   A  D    V     F    P  D+  P      G VN+++AC R + V
Sbjct: 67  DLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQ---GVVNVMKACTRAKSV 123
Query: 175 NRFILISS 182
            R IL SS
Sbjct: 124 KRVILTSS 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	2e-54
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	2e-52
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	3e-51
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	7e-41
1xq6_A	253	Unknown protein; structural genomics, protein stru	3e-40
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	4e-36
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	6e-34
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	8e-25
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	2e-24
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	7e-24
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	2e-21
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	3e-20
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	4e-20
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	6e-20
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	1e-18
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	1e-16
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	1e-16
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	2e-16
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	9e-16
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	1e-15
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	3e-15
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	6e-15
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	2e-14
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	2e-14
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	6e-14
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	1e-13
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	2e-13
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	1e-12
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	1e-12
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	3e-12
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	3e-11
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	7e-11
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	9e-11
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	5e-10
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	3e-09
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	5e-09
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	6e-08
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	9e-08
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	2e-07
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	4e-07
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	5e-07
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	8e-07
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	9e-07
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	1e-06
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	1e-06
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	2e-06
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	2e-06
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	5e-06
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	9e-06
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	1e-05
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	2e-05
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	2e-05
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	5e-05
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	6e-05
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	8e-05
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	1e-04
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	3e-04
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	5e-04
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	5e-04
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	6e-04
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	8e-04

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score =  174 bits (443), Expect = 2e-54
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 15/193 (7%)

Query: 56  EEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQ 115
               EN+  +  ++ V GA G   + ++ +L  KG    A VR+ ++      ++  +  
Sbjct: 11  SSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL--RERGASD 68

Query: 116 IVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN 175
           IV A++ E     S A     +AVV A G  P         +D +G +  ++   KRG+ 
Sbjct: 69  IVVANLEE---DFSHAF-ASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIK 124

Query: 176 RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRN 235
           RFI++SS+       G +    Y         L+AK  A+  +++S ++YTI+RPG L N
Sbjct: 125 RFIMVSSVGTVDPDQGPMNMRHY---------LVAKRLADDELKRSSLDYTIVRPGPLSN 175

Query: 236 EPPTGNIIMETEV 248
           E  TG + +    
Sbjct: 176 EESTGKVTVSPHF 188

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score =  168 bits (428), Expect = 2e-52
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KIF+ G+TG  GK +++ L    + + AG R +++          +++ V  DV     +
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV-----PQYNNVKAVHFDVDWTPEE 56

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
           +++ +    +A++  +G        +  KVD +G V L++A  K  V RFIL+S+I    
Sbjct: 57  MAKQL-HGMDAIINVSGSGGK----SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQ 111

Query: 188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-SGINYTIIRPGGLRNEPPTGNIIMET 246
                         +      IAK  A+ Y+ K + ++YTII+PG L  E  TG I +  
Sbjct: 112 PE-----KWIGAGFDALKDYYIAKHFADLYLTKETNLDYTIIQPGALTEEEATGLIDIND 166

Query: 247 EVRAFI 252
           EV A  
Sbjct: 167 EVSASN 172

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score =  165 bits (419), Expect = 3e-51
 Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 16/183 (8%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
             KKI + GATG +G   + Q +  G+ V   VRD  +  +          +V  DV + 
Sbjct: 2   AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP---RPAHVVVGDVLQ- 57

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
           +A + + +    +AV+   G +       P  V + G  N+V A +  GV++ +  +S  
Sbjct: 58  AADVDKTV-AGQDAVIVLLGTRNDLS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIM 244
           +        L                 ++  + +R+SG+ Y  + P  + ++P TG   +
Sbjct: 114 L--------LWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTV 165

Query: 245 ETE 247
             +
Sbjct: 166 TLD 168

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score =  139 bits (352), Expect = 7e-41
 Identities = 40/203 (19%), Positives = 66/203 (32%), Gaps = 24/203 (11%)

Query: 49  MGKSEITEEAEENVSV-----KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDK 102
           MG S                   K + + GA G   + ++ QL  K         R   K
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK 60

Query: 103 AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGT 162
                  +    QI+  DV    A L +A+    + V      +            +   
Sbjct: 61  IHKPYPTN---SQIIMGDVLN-HAALKQAM-QGQDIVYANLTGEDL----------DIQA 105

Query: 163 VNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG 222
            +++ A +   V R I + S+ +     G+ +        V G  L    +A   I  SG
Sbjct: 106 NSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNN---AVIGEPLKPFRRAADAIEASG 162

Query: 223 INYTIIRPGGLRNEPPTGNIIME 245
           + YTI+RP  L +E      +  
Sbjct: 163 LEYTILRPAWLTDEDIIDYELTS 185

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score =  138 bits (349), Expect = 3e-40
 Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKAD 120
           S     + V GA+G +G+ + ++L      F  K  VR     +           +   D
Sbjct: 1   SANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG----GEADVFIGD 56

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGW-----------------DLFAPWKVDNFGTV 163
           +T+ +  ++ A     +A+V  T   P                   D   P +VD  G  
Sbjct: 57  ITD-ADSINPAF-QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQK 114

Query: 164 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI 223
           N ++A +  GV   +++ S+   G      LN         G  L+ K +AEQY+  SG 
Sbjct: 115 NQIDAAKVAGVKHIVVVGSM--GGTNPDHPLNKL-----GNGNILVWKRKAEQYLADSGT 167

Query: 224 NYTIIRPGGLRNEPPTG 240
            YTIIR GGL ++    
Sbjct: 168 PYTIIRAGGLLDKEGGV 184

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score =  126 bits (319), Expect = 4e-36
 Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K KKI + GA+G  G  ++ + L +GF V A VR  +K K     +N  L++ KADV+  
Sbjct: 3   KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIK----IENEHLKVKKADVSSL 58

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
              + E     ++AV+ A    PGW+    +       + +++  +K GVNRF+++    
Sbjct: 59  DE-VCEVC-KGADAVISAFN--PGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG 114

Query: 185 VNGAAMGQIL--NPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG-LRNEPPTGN 241
               A G  L  +       + G+  + +      +++  I++    P   +R    TG 
Sbjct: 115 SLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGR 174

Query: 242 IIMETE 247
             +  +
Sbjct: 175 YRLGKD 180

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score =  121 bits (304), Expect = 6e-34
 Identities = 35/185 (18%), Positives = 68/185 (36%), Gaps = 17/185 (9%)

Query: 68  KIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            I + GA G   + +   LL      +    R L         D+  + +++        
Sbjct: 7   YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQN-PG 65

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
            L +A+  ++E V                        ++V+A  +  + R I +S   ++
Sbjct: 66  XLEQAV-TNAEVVFVGAMESGS------------DMASIVKALSRXNIRRVIGVSMAGLS 112

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMET 246
           G     +    + F N+    +  + QA   +R+S +NYTI+R   L N+P   +  +  
Sbjct: 113 GEFPVAL--EKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWLYNDPEXTDYELIP 170

Query: 247 EVRAF 251
           E   F
Sbjct: 171 EGAQF 175

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 97.4 bits (242), Expect = 8e-25
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 18/186 (9%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KI + GATG +G RI+E+   +G  V A VR+  K   T    +  + I++ D+ + +  
Sbjct: 2   KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT----HKDINILQKDIFDLTLS 57

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI-LVN 186
                  D   VV A G  P        +       +L+         R +++     + 
Sbjct: 58  DLS----DQNVVVDAYGISPDEA-----EKHVTSLDHLISVLNGTVSPRLLVVGGAASLQ 108

Query: 187 GAAMGQILNPAYIF---LNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNE-PPTGNI 242
               G  L  +               AK        ++  ++T I P  +      TG+ 
Sbjct: 109 IDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGERTGDY 168

Query: 243 IMETEV 248
            +  + 
Sbjct: 169 QIGKDH 174

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 96.2 bits (239), Expect = 2e-24
 Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 14/188 (7%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KI V GATG +G  IV +   +G  V A VRD  KA      D     +           
Sbjct: 2   KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA-----ADRLGATVATLVKEPLVLT 56

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS--ILV 185
            ++    D  AVV A     G        +      +LV   R        ++ S  + +
Sbjct: 57  EADLDSVD--AVVDALSVPWGSG---RGYLHLDFATHLVSLLRNSDTLAVFILGSASLAM 111

Query: 186 NGAAMGQILN-PAYIFLNVFGLTLIAKLQAEQYIRK-SGINYTIIRPGGLRNEPPTGNII 243
            GA    IL+ P       +    + +    Q+++  + +N+  I P       P  + +
Sbjct: 112 PGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSEAFPSGPATSYV 171

Query: 244 METEVRAF 251
              +    
Sbjct: 172 AGKDTLLV 179

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 97.0 bits (242), Expect = 7e-24
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 24/179 (13%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           K  V GATG  G      + A G  +    R   + +          +   A++ + +  
Sbjct: 15  KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL---AYLEPECRVAEMLDHAG- 70

Query: 128 LSEAIGDDSEAVV-CA--TGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
           L  A+    + V+  A     +P  W            T     AC +  V R + + S 
Sbjct: 71  LERAL-RGLDGVIFSAGYYPSRPRRWQEE--VASALGQTNPFYAACLQARVPRILYVGSA 127

Query: 184 LVNGAAMGQI-------LNPAYIFLNVFGLTLIAKLQAEQYIR---KSGINYTIIRPGG 232
                    +        +      + + L    K   ++  R   ++G+   I  PG 
Sbjct: 128 YAMPRHPQGLPGHEGLFYDSLPSGKSSYVLC---KWALDEQAREQARNGLPVVIGIPGM 183

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT 122
           + ++K I V GATG  G  ++    A G  V+A V  L        +  P++ + +  + 
Sbjct: 2   AQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLL 61

Query: 123 EGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
                +     + +      T  Q G ++            +L +A ++ G  +  + SS
Sbjct: 62  NNVPLMDTLF-EGAHLAFINTTSQAGDEIAI--------GKDLADAAKRAGTIQHYIYSS 112

Query: 183 ILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
             +   ++        ++          K   E Y+R+ G+  T +  G
Sbjct: 113 --MPDHSLYGPWPAVPMW--------APKFTVENYVRQLGLPSTFVYAG 151

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 85.6 bits (212), Expect = 3e-20
 Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 30/205 (14%)

Query: 49  MGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT 106
           M ++E   +  E+  ++ K +F+ GA+G +G+ +++++L +G    V    R   +  T 
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGR---RKLTF 57

Query: 107 LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG---FQPGWDLFAPWKVDNFGTV 163
             +   ++     D  +     S   G D     C  G    + G + F   +VD    +
Sbjct: 58  DEEAYKNVNQEVVDFEKLDDYASAFQGHD--VGFCCLGTTRGKAGAEGF--VRVDRDYVL 113

Query: 164 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI 223
              E  +  G   F L+SS   + ++    L                K + E  + +   
Sbjct: 114 KSAELAKAGGCKHFNLLSSKGADKSSNFLYLQ--------------VKGEVEAKVEELKF 159

Query: 224 -NYTIIRPG---GLRNEPPTGNIIM 244
             Y++ RPG     R E   G  ++
Sbjct: 160 DRYSVFRPGVLLCDRQESRPGEWLV 184

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299

 Score = 86.3 bits (214), Expect = 4e-20
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 18/167 (10%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           +K + V G TG+ G  +   LL  G F V+   R+  K      +     ++V+ D  + 
Sbjct: 5   KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRL-QGAEVVQGDQDDQ 63

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
              +  A+ + + A    T     W+  +  +    G   L +  R+ G++  +      
Sbjct: 64  VI-MELAL-NGAYATFIVT---NYWESCSQEQEVKQGK-LLADLARRLGLHYVVYSGLEN 117

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
           +     G++    +            K + E+Y R  G+  T +R  
Sbjct: 118 IKKLTAGRLAAAHFD----------GKGEVEEYFRDIGVPMTSVRLP 154

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313

 Score = 85.8 bits (212), Expect = 6e-20
 Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-----DLDKAKTTLSKDNPSLQIVKA 119
           K+ ++ + G TG  GKRIV   ++ G       R     ++DK +  L       ++++A
Sbjct: 3   KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 62

Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
            + +    L +A+    + V+ A                    + LVEA ++ G  +  L
Sbjct: 63  SLDDHQR-LVDAL-KQVDVVISALA-------GGVLSHHILEQLKLVEAIKEAGNIKRFL 113

Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
            S   ++   M   L P  I           K +  + I  + I YT +   
Sbjct: 114 PSEFGMDPDIMEHALQPGSITFI-------DKRKVRRAIEAASIPYTYVSSN 158

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308

 Score = 81.9 bits (202), Expect = 1e-18
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 27/172 (15%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR------DLDKAKTTLSKDNPSLQIVKAD 120
            +I + GATG  G+ + +  L  G      VR      + +KA+   S       IV   
Sbjct: 5   SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 64

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           + +  A L EA+  + + V+   G            +     VN+++A ++ G  +    
Sbjct: 65  IDD-HASLVEAV-KNVDVVISTVGS-----------LQIESQVNIIKAIKEVGTVKRFFP 111

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG 232
           S    +   +  +     +F          K +  + I   GI YT +    
Sbjct: 112 SEFGNDVDNVHAVEPAKSVF--------EVKAKVRRAIEAEGIPYTYVSSNC 155

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346

 Score = 77.4 bits (190), Expect = 1e-16
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 25/171 (14%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR----DLDKAKTTLSKDNPSLQIVKADVT 122
            ++ +AGATG  G+ +    L          R       KAK   + ++    IV   + 
Sbjct: 11  GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLIN 70

Query: 123 EGSAKLSEAI-GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS 181
           E  A + + +   + + VV   G +                + LV+A +  G  +  L S
Sbjct: 71  EQEA-MEKILKEHEIDIVVSTVGGE-----------SILDQIALVKAMKAVGTIKRFLPS 118

Query: 182 SILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG 232
               +        +P    LN++      K +  Q + +SGI +T I    
Sbjct: 119 EFGHDVNRA----DPVEPGLNMYR----EKRRVRQLVEESGIPFTYICCNS 161

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318

 Score = 76.9 bits (189), Expect = 1e-16
 Identities = 35/167 (20%), Positives = 55/167 (32%), Gaps = 22/167 (13%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLSKDNPSLQIVKADVTEGS 125
            KI + G TG  G  +V+  L  G       R +  K        +    IVK ++ E  
Sbjct: 12  SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDE-H 70

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
            KL E +    + V+ A  F    D              ++EA +  G  +  L S   V
Sbjct: 71  EKLVELM-KKVDVVISALAFPQILD-----------QFKILEAIKVAGNIKRFLPSDFGV 118

Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG 232
               +          L  F   +  K    + I ++ I YT +    
Sbjct: 119 EEDRINA--------LPPFEALIERKRMIRRAIEEANIPYTYVSANC 157

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 34/169 (20%), Positives = 54/169 (31%), Gaps = 34/169 (20%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            I + GATG  G  I  Q +A        GVR+++K           + + + D      
Sbjct: 2   NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGK---VSVRQLDYFN-QE 57

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTV----NLVEACRKRGVNRFILISS 182
            + EA     + VV                  +F  +    NLV A ++ GV   I I  
Sbjct: 58  SMVEAF-KGMDTVV----------FIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGY 106

Query: 183 ILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
                       + +                A + +  SGI+YT +R  
Sbjct: 107 Y---ADQHNNPFHMS-----------PYFGYASRLLSTSGIDYTYVRMA 141

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 74.0 bits (182), Expect = 9e-16
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 13/169 (7%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
              KI +AG  G  G  +  +L A+G  V    R               +Q + ADVT  
Sbjct: 2   SLSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPA-------GVQTLIADVTR- 52

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
              L+  +    E +V        +           G  N + A     +     +SS  
Sbjct: 53  PDTLASIVHLRPEILVYCVAA-SEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTG 111

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
           V G  + + L+           +    L+AE  +     + TI+R  G+
Sbjct: 112 VYGQEVEEWLDEDTP-PIAKDFSGKRMLEAEALLA--AYSSTILRFSGI 157

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307

 Score = 74.2 bits (182), Expect = 1e-15
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-------DLDKAKTTLSKDNPSLQIVKA 119
            KI + G TG+ G+ IV   +  G    A VR          K +   +  +  + +++ 
Sbjct: 3   NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEG 62

Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
           D+ +    L +AI    + V+CA G     +            V +++A ++ G  +   
Sbjct: 63  DINDHET-LVKAI-KQVDIVICAAGR-LLIE----------DQVKIIKAIKEAGNVKKFF 109

Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG 232
            S   ++        +       VF      K    + I   G+ YT +    
Sbjct: 110 PSEFGLDVDRH----DAVEPVRQVFE----EKASIRRVIEAEGVPYTYLCCHA 154

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 33/188 (17%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVT 122
             K++ +AGATG +G+ +++++L++     V A  R           ++P L      + 
Sbjct: 4   TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA-------LAEHPRLDNPVGPLA 56

Query: 123 EGSAKLSEAIGDDSEAVVCATG--FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           E    L   +    +   C  G   +      A   VD    + + +   + G   ++++
Sbjct: 57  E----LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVV 112

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI-NYTIIRPG---GLRNE 236
           S++  +  +        Y            K + EQ +++ G    TI RP    G R E
Sbjct: 113 SALGADAKSSI-----FY---------NRVKGELEQALQEQGWPQLTIARPSLLFGPREE 158

Query: 237 PPTGNIIM 244
                I+ 
Sbjct: 159 FRLAEILA 166

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287

 Score = 71.5 bits (176), Expect = 6e-15
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 36/169 (21%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           I V GATG  G  +++ LL K  A  + A VR+++KA T   +    +++   D  +   
Sbjct: 3   IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQG---VEVRHGDYNQ-PE 58

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTV----NLVEACRKRGVNRFILISS 182
            L +A       ++            +    DN   +    N+V+A R  GV        
Sbjct: 59  SLQKAF-AGVSKLL----------FISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGY 107

Query: 183 ILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
                + +   L   +             L  E  IR + I YT +R  
Sbjct: 108 AFAEESIIP--LAHVH-------------LATEYAIRTTNIPYTFLRNA 141

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 30/165 (18%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           I + GATG  G  ++E L+    A  + A VR+  KA+   ++    + + +AD  +  A
Sbjct: 2   IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQG---ITVRQADYGD-EA 57

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
            L+ A+    E ++  +  + G               N++ A +  GV      S +  +
Sbjct: 58  ALTSAL-QGVEKLLLISSSEVGQRAPQ--------HRNVINAAKAAGVKFIAYTSLLHAD 108

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
            + +G                    ++ E+ +  SGI YT++R G
Sbjct: 109 TSPLG---------------LADEHIETEKMLADSGIVYTLLRNG 138

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 34/186 (18%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           K++ V GA G  G+ + E+L      ++  + DL      L    P+ + V+ D+ + +A
Sbjct: 4   KRLLVTGAAGQLGRVMRERLAPMAEILR--LADLS----PLDPAGPNEECVQCDLADANA 57

Query: 127 KLSEAIGDDSEAVV--CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
            ++  +    + +V       +  ++     + +  G  NL EA R  G  R +  SS  
Sbjct: 58  -VNAMV-AGCDGIVHLGGISVEKPFE--QILQGNIIGLYNLYEAARAHGQPRIVFASSN- 112

Query: 185 VNGAAMGQILNPAYIF---------LNVFGLTLIAKLQAEQYIR----KSGINYTIIRPG 231
                +G    P               ++G++   K   E   R    K G    ++R G
Sbjct: 113 ---HTIGY--YPQTERLGPDVPARPDGLYGVS---KCFGENLARMYFDKFGQETALVRIG 164

Query: 232 GLRNEP 237
               EP
Sbjct: 165 SCTPEP 170

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score = 68.5 bits (168), Expect = 6e-14
 Identities = 37/180 (20%), Positives = 58/180 (32%), Gaps = 34/180 (18%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            ++ V GA G  G  I   L      V    R  D             +IV  D+ +  A
Sbjct: 3   NRLLVTGAAGGVGSAIRPHLGTLAHEV----RLSDIVDL--GAAEAHEEIVACDLADAQA 56

Query: 127 KLSEAIGDDSEAVV--CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
            + + +  D + ++       +  W+     + +  G  NL EA R  G  R +  SS  
Sbjct: 57  -VHDLV-KDCDGIIHLGGVSVERPWN--DILQANIIGAYNLYEAARNLGKPRIVFASS-- 110

Query: 185 VNGAAMGQILNPAYIF---------LNVFGLTLIAKLQAEQYIR----KSGINYTIIRPG 231
                +G    P              +++GL+   K   E        K  I    IR G
Sbjct: 111 --NHTIG--YYPRTTRIDTEVPRRPDSLYGLS---KCFGEDLASLYYHKFDIETLNIRIG 163

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 27/171 (15%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL------DKAKTTLSKDNPSLQIVKAD 120
           +KI + G TG  GK +V   L+         R L         +      +  + I++ +
Sbjct: 5   EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           + E   K+   +    + V+ A  F                 ++++ A +  G  +  L 
Sbjct: 65  MEE-HEKMVSVL-KQVDIVISALPF-----------PMISSQIHIINAIKAAGNIKRFLP 111

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
           S        +          L  F   L  K    + I  + + YT +   
Sbjct: 112 SDFGCEEDRIKP--------LPPFESVLEKKRIIRRAIEAAALPYTYVSAN 154

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 28/187 (14%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           KK+F+ G  G  G  I E LL +G  V  G+ +    +    KD+P+L  V+  + +  A
Sbjct: 22  KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKDHPNLTFVEGSIAD-HA 79

Query: 127 KLSEAIGDDSEAVVC---ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
            +++ IGD     V    A+   P  D +     +  G  N+V+A +K  V RF+   + 
Sbjct: 80  LVNQLIGDLQPDAVVHTAASYKDPD-DWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQT- 137

Query: 184 LVNGAAMGQILNPAYIFLNV----------FGLTLIAKLQAEQYIRKSGINYTIIRPG-- 231
                  G  + P    + +          + ++   K   E Y+  SG+++   R    
Sbjct: 138 ---ALCYG--VKPIQQPVRLDHPRNPANSSYAIS---KSANEDYLEYSGLDFVTFRLANV 189

Query: 232 -GLRNEP 237
            G RN  
Sbjct: 190 VGPRNVS 196

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 31/189 (16%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V G++G  G  +V  L  K         D+      + +D   ++ +  DV+     +
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKYGKKNVIASDI------VQRDTGGIKFITLDVSNRDE-I 54

Query: 129 SEAIGDDSE-------AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS 181
             A+   S         ++ A G +   D    +KV+  GT N++EA ++  V + ++ S
Sbjct: 55  DRAVEKYSIDAIFHLAGILSAKGEK---DPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111

Query: 182 SILVNGAAMGQ-------ILNPAYIFLNVFGLT-LIAKLQAEQYIRKSGINYTIIRPGGL 233
           +I V G    +       I  P      +FG+T + A+L  + Y  K G++   +R  G+
Sbjct: 112 TIGVFGPETPKNKVPSITITRP----RTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167

Query: 234 --RNEPPTG 240
                 PT 
Sbjct: 168 ISYKAEPTA 176

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKA 119
           + + + V GA+G  G  +V +LL +G+ V+A VRD    K       L K    L + KA
Sbjct: 4   QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKA 63

Query: 120 DVT-EGSAKLSEAIGDDSEAVV-CATGFQ-----PGWDLFAPWKVDNFGTVNLVEACRKR 172
           D+  EGS    EAI      V   AT        P  ++  P  ++  G + ++++C   
Sbjct: 64  DLADEGS--FDEAI-KGCTGVFHVATPMDFESKDPENEVIKP-TIE--GMLGIMKSCAAA 117

Query: 173 G-VNRFILISSI 183
             V R +  SS 
Sbjct: 118 KTVRRLVFTSSA 129

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 43/130 (33%), Positives = 58/130 (44%), Gaps = 18/130 (13%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPS-LQIVKADV 121
           +K   V G TG     +V+ LL KG+AV   VRD D  K     L       L+I +AD+
Sbjct: 9   KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADL 68

Query: 122 T-EGSAKLSEAIGDDSEAVV-CATGFQ-----PGWDLFAPWKVDNFGTVNLVEACRK-RG 173
           T E S      I    + V   AT        P  D+  P  +   G VN+++AC + + 
Sbjct: 69  TDELS--FEAPI-AGCDFVFHVATPVHFASEDPENDMIKP-AIQ--GVVNVMKACTRAKS 122

Query: 174 VNRFILISSI 183
           V R IL SS 
Sbjct: 123 VKRVILTSSA 132

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA---KTTLSKDNPS--LQIVKA 119
           +   + V GA G     +VEQLL  G+ V+   R   K    +       P      V  
Sbjct: 10  EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69

Query: 120 DVTEGSAKLSEAIGDDSEAVV-CATGFQ---PGWDLFAPWKVDNFGTVNLVEACRKRG-V 174
           D+ +  A   E I   +  V   A+         ++  P  +   GT+N + A      V
Sbjct: 70  DMLKQGA-YDEVI-KGAAGVAHIASVVSFSNKYDEVVTP-AIG--GTLNALRAAAATPSV 124

Query: 175 NRFILISSI 183
            RF+L SS 
Sbjct: 125 KRFVLTSST 133

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 53/224 (23%)

Query: 60  ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD---LDKAKT-TLSKDNPSLQ 115
           EN+  +   I + GA G  G+++ ++L+  G      V     +D  +    +  + ++ 
Sbjct: 8   ENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVD 67

Query: 116 IVKADVTEGSAKLSEAIGDDSEAVVC------ATG---FQPGWDLFAPWKVDNF-GTVNL 165
              AD++    +  + +    + +              F  G+ +       N  GT  L
Sbjct: 68  ARAADLSA-PGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRI-------NLDGTRYL 119

Query: 166 VEACRKRGVN-----RFILISSILVNGAAMGQ------ILNPAYIFLNVFGLTLIAKLQA 214
            +A R          R +  SSI V GA +           P    L  +G     K   
Sbjct: 120 FDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTP----LTSYGTQ---KAIC 172

Query: 215 EQYI----RKSGINYTIIR-PG-----GLRNEPPTG---NIIME 245
           E  +    R+   +   IR P      G  N   +G   NI+ E
Sbjct: 173 ELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILRE 216

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score = 59.9 bits (146), Expect = 9e-11
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 20/131 (15%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK------TTLSKDNPSLQIVKAD 120
            ++ V G TG  G  I++ LL  G++V   +R   + K      T L   +  L    AD
Sbjct: 2   GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNAD 61

Query: 121 VT-EGSAKLSEAIGDDSEAVV-CATGFQ-----PGWDLFAPWKVDNFGTVNLVEACRKRG 173
           ++   S   + AI +    +   A+        P   +     VD  G + +++AC    
Sbjct: 62  LSNPDS--FAAAI-EGCVGIFHTASPIDFAVSEPEEIVTKR-TVD--GALGILKACVNSK 115

Query: 174 -VNRFILISSI 183
            V RFI  SS 
Sbjct: 116 TVKRFIYTSSG 126

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score = 57.6 bits (140), Expect = 5e-10
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 27/195 (13%)

Query: 49  MGKSEITEEAEENVSVKQK--KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT 106
           MG S         +  +    +I + G  G  G  ++E  L +G  +   + +    K  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEI-LVIDNFATGKRE 59

Query: 107 LSKDNPSLQIVKADVTEGSAKLSEAIGDDS-EAVV--CATGFQPGWDLFAPWKVDNFGTV 163
           +      L +++  VT+ +  L  A        VV   A   +   D       +  G++
Sbjct: 60  VLPPVAGLSVIEGSVTD-AGLLERAFDSFKPTHVVHSAAAY-KDPDDWAEDAATNVQGSI 117

Query: 164 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF---------LNVFGLTLIAKLQA 214
           N+ +A  K GV R +   + L  G        PA +             +G++   K   
Sbjct: 118 NVAKAASKAGVKRLLNFQTALCYG-------RPATVPIPIDSPTAPFTSYGIS---KTAG 167

Query: 215 EQYIRKSGINYTIIR 229
           E ++  S +    +R
Sbjct: 168 EAFLMMSDVPVVSLR 182

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 37/214 (17%)

Query: 42  HSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL- 100
           H  +   MG     EE  + +  + K   + G  G  G  ++E LL     V  G+ +  
Sbjct: 3   HHHHHGSMGMMSRYEELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKV-VGLDNFA 61

Query: 101 --------DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV---CATGFQPGW 149
                   +       K   + + ++ D+               + V+            
Sbjct: 62  TGHQRNLDEVRSLVSEKQWSNFKFIQGDIRN--LDDCNNACAGVDYVLHQAALGSVPRSI 119

Query: 150 DLFAPW---KVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG------QILNPAYIF 200
           +   P      +  G +N++ A R   V  F   +S    G   G       I  P    
Sbjct: 120 N--DPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKP---- 173

Query: 201 LNVFGLTLIAKLQAEQYI----RKSGINYTIIRP 230
           L+ + +T   K   E Y     R  G +   +R 
Sbjct: 174 LSPYAVT---KYVNELYADVFSRCYGFSTIGLRY 204

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 51/205 (24%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            KI V G TG  G+ +VE +   G         L ++    +K     +   +D T    
Sbjct: 3   LKIAVTGGTGFLGQYVVESIKNDGNTPII----LTRSIG--NKAINDYEYRVSDYT--LE 54

Query: 127 KLSEAIGDDSEAVV---CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
            L   + +D +AVV      G Q     F     +   T NL +AC +  ++  +  S+I
Sbjct: 55  DLINQL-NDVDAVVHLAATRGSQGKISEF---HDNEILTQNLYDACYENNISNIVYASTI 110

Query: 184 LVNGAAMG------QILNPAYIFLNVFGLTLIAKLQAEQYI----RKSGINYTIIR---- 229
                         ++  P      ++G++   KL  E       RK G+    +R    
Sbjct: 111 SAYSDETSLPWNEKELPLP----DLMYGVS---KLACEHIGNIYSRKKGLCIKNLRFAHL 163

Query: 230 ------PGG---------LRNEPPT 239
                                E  T
Sbjct: 164 YGFNEKNNYMINRFFRQAFHGEQLT 188

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 41/205 (20%), Positives = 62/205 (30%), Gaps = 23/205 (11%)

Query: 43  SINSTKMGKSEITEEAEENV-SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD 101
           + N T  G     E   E     +  KI + GA G     I  +L  +G  V        
Sbjct: 5   TTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVI-ASDWKK 63

Query: 102 KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV---CATGFQPGWDLFAPWKV- 157
               T         +V   V E   K++E +    + V       G   G+       + 
Sbjct: 64  NEHMTEDMFCDEFHLVDLRVMENCLKVTEGV----DHVFNLAADMG-GMGFIQSNHSVIM 118

Query: 158 -DNF-GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF---LNVFGLTL---I 209
            +N   + N++EA R  G+ RF   SS  +             +               +
Sbjct: 119 YNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGL 178

Query: 210 AKLQAE----QYIRKSGINYTIIRP 230
            KL  E     Y +  GI   I R 
Sbjct: 179 EKLATEELCKHYNKDFGIECRIGRF 203

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 48/189 (25%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGS 125
           ++ V G  G  G  IVE LLA+G  V A + +L     T  ++N    +   + D+ +  
Sbjct: 2   RVLVTGGAGFIGSHIVEDLLARGLEV-AVLDNL----ATGKRENVPKGVPFFRVDLRD-K 55

Query: 126 AKLSEAIGDDS-EAVV--CATGF------QPGWDLFAPWKVDNFGTVNLVEACRKRGVNR 176
             +  A  +     V    A          P  D    ++V+  G +NL+EACR+ GV +
Sbjct: 56  EGVERAFREFRPTHVSHQAAQASVKVSVEDPVLD----FEVNLLGGLNLLEACRQYGVEK 111

Query: 177 FILISSILVNGAAM-GQI-----------LNPAYIFLNVFGLTLIAKLQAEQYIR----K 220
            +  S+    G A+ G++             P     + +  +   K   E Y+      
Sbjct: 112 LVFAST----GGAIYGEVPEGERAEETWPPRP----KSPYAAS---KAAFEHYLSVYGQS 160

Query: 221 SGINYTIIR 229
            G+ +  +R
Sbjct: 161 YGLKWVSLR 169

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 26/129 (20%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKA------GVRDLDKAKTTLSKDNPSLQIVK 118
            + +I + G  G  G  +   L+A G  V              +       + P L++ +
Sbjct: 6   LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKF-LEKPVLELEE 64

Query: 119 ADVTEGSAKLSEAIGDDSEAVV---CATGFQPGWDLFAPWK-VDNF-GTVNLVEACRKRG 173
            D++            D   V            +    P   +DN     +L+  C   G
Sbjct: 65  RDLS------------DVRLVYHLASHKSVPRSFK--QPLDYLDNVDSGRHLLALCTSVG 110

Query: 174 VNRFILISS 182
           V + ++ S+
Sbjct: 111 VPKVVVGST 119

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 13/122 (10%), Positives = 35/122 (28%), Gaps = 3/122 (2%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
               + G TG  G  + E L           V  + +       ++  +  V+ D+++  
Sbjct: 2   SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPD 61

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK--RGVNRFILISSI 183
              ++         V    +          + ++    N+++A       +    L +  
Sbjct: 62  DSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGR 121

Query: 184 LV 185
             
Sbjct: 122 KH 123

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 55/214 (25%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV----------------------RDLDK 102
           + + + + GATG  G+ +V +LL +   V   +                       D + 
Sbjct: 72  ELRTVLLTGATGFLGRYLVLELLRRL-DVDGRLICLVRAESDEDARRRLEKTFDSGDPEL 130

Query: 103 AKTTLSKDNPSLQIVKADVTE---GSAKLSEA----IGDDSEAVV-CA--TGFQPGWDLF 152
            +         L++V  D +E   G   L +     + +  + +V  A      P  +LF
Sbjct: 131 LRHFKELAADRLEVVAGDKSEPDLG---LDQPMWRRLAETVDLIVDSAAMVNAFPYHELF 187

Query: 153 APWKVDNF-GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI-- 209
            P    N  GT  L+       +  F  +S+  V  A              +     +  
Sbjct: 188 GP----NVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDG 243

Query: 210 --------AKLQAEQYIR----KSGINYTIIRPG 231
                   +K   E  +R       +   + R G
Sbjct: 244 GWAGGYGTSKWAGEVLLREANDLCALPVAVFRCG 277

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 44/184 (23%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGS 125
           +I V G  G  G  +V++L+  G+ V   V +L    ++  ++   PS ++   D+ +  
Sbjct: 2   RIVVTGGAGFIGSHLVDKLVELGYEV-VVVDNL----SSGRREFVNPSAELHVRDLKD-- 54

Query: 126 AKLSEAIGDDS------EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
                 I  D          V  +  +P       +  +   T N++E  R+ GV   + 
Sbjct: 55  YSWGAGIKGDVVFHFAANPEVRLSTTEPIVH----FNENVVATFNVLEWARQTGVRTVVF 110

Query: 180 ISSILVNGAAMG----------QILNPAYIFLNVFGLTLIAKLQAEQYI----RKSGINY 225
            SS        G          +   P    ++V+G     K   E       R  G+  
Sbjct: 111 ASS----STVYGDADVIPTPEEEPYKP----ISVYGAA---KAAGEVMCATYARLFGVRC 159

Query: 226 TIIR 229
             +R
Sbjct: 160 LAVR 163

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 46/196 (23%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-------KDNPSLQ 115
            +    + V G  G  G  +V++LL  G      V  +D     L         D+P+++
Sbjct: 29  KLANTNVMVVGGAGFVGSNLVKRLLELGVNQ---VHVVDN----LLSAEKINVPDHPAVR 81

Query: 116 IVKADVTEGSAKLSEAIGDDSEAVV---CATG-----FQPGWDLFAPWKVDNFGTVNLVE 167
             +  +T+    L  ++ D+ + V       G       P  D     + +   T+ L E
Sbjct: 82  FSETSITD--DALLASLQDEYDYVFHLATYHGNQSSIHDPLADH----ENNTLTTLKLYE 135

Query: 168 ACRK-RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL---------IAKLQAEQY 217
             +  + + + +  ++    G ++ +             +           ++K+  E Y
Sbjct: 136 RLKHFKRLKKVVYSAA----GCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFY 191

Query: 218 I----RKSGINYTIIR 229
                ++  +     R
Sbjct: 192 SVYYHKQHQLPTVRAR 207

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 20/183 (10%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT 122
           S+K KK+ + G  G  G  + +++L        G+ D+   +      +  +   + D+T
Sbjct: 21  SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGM-DMQTDRLGDLVKHERMHFFEGDIT 79

Query: 123 EGSAKLSEAIGDDSEAV---VCATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVNR 176
             + +  E      + +   V      P   +  P   +++D    + +V +  K G   
Sbjct: 80  I-NKEWVEYHVKKCDVILPLVAIAT--PATYVKQPLRVFELDFEANLPIVRSAVKYGK-H 135

Query: 177 FILISSILVNGAAMGQILNP---AYIFLNVFGLTLI---AKLQAEQYI---RKSGINYTI 227
            +  S+  V G    +  +P   A  +  +     I   +K   ++ I      G+N+T+
Sbjct: 136 LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLNFTL 195

Query: 228 IRP 230
            RP
Sbjct: 196 FRP 198

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 20/99 (20%)

Query: 155 WKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ-------ILNPAYIFLNVFGLT 207
           W ++     +++   + + + +    SSI V G    +       I+ P      V+G++
Sbjct: 91  WDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEP----STVYGIS 146

Query: 208 LIAKLQAEQYI----RKSGINYTIIRPGGL--RNEPPTG 240
              K   E++        G++   IR  GL   + PP G
Sbjct: 147 ---KQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGG 182

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 20/168 (11%), Positives = 48/168 (28%), Gaps = 18/168 (10%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
              +   G  G + + +   L  +G+ +    R+ D+          +++   A+     
Sbjct: 5   TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQM--------EAIRASGAEPLLWP 55

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
            +      D    ++ +T    G D            +    A R         +S+  V
Sbjct: 56  GEEPSL--DGVTHLLISTAPDSGGDPVL-------AALGDQIAARAAQFRWVGYLSTTAV 106

Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
            G   G  ++                +  +Q+     +   + R  G+
Sbjct: 107 YGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAVPNLPLHVFRLAGI 154

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 28/146 (19%)

Query: 56  EEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL---------DKAKTT 106
           EE  + +    K   + G  G  G  ++E+LL     V  G+ +          +     
Sbjct: 15  EEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVI-GLDNFSTGHQYNLDEVKTLV 73

Query: 107 LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV-CATGFQPGWDLFAPWKVDN------ 159
            ++       ++ D+ + +    + +    + V+  A           P  + +      
Sbjct: 74  STEQWSRFCFIEGDIRDLTT-CEQVM-KGVDHVLHQAA--LGS----VPRSIVDPITTNA 125

Query: 160 ---FGTVNLVEACRKRGVNRFILISS 182
               G +N++ A +   V  F   +S
Sbjct: 126 TNITGFLNILHAAKNAQVQSFTYAAS 151

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 25/83 (30%)

Query: 161 GTVNLVEACRKRGVNRFILISSILVNGAAMG----------QILNPAYIFLNVFGLTLIA 210
            T  L+EA RK GV+R +  S+        G             +P    ++++G +   
Sbjct: 93  ATYRLLEAMRKAGVSRIVFTST----STVYGEAKVIPTPEDYPTHP----ISLYGAS--- 141

Query: 211 KLQAEQYIRKS----GINYTIIR 229
           KL  E  I        +   I R
Sbjct: 142 KLACEALIESYCHTFDMQAWIYR 164

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 41/201 (20%), Positives = 66/201 (32%), Gaps = 46/201 (22%)

Query: 63  SVKQKKIFVAGATGSS---GKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA 119
           S   K   V   TG+S   G+ I E  +A G  V    R  +     ++      + +  
Sbjct: 2   SESAKVWLV---TGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISL 58

Query: 120 DVTEGSAKLSEAIGDDSEA------VV-CATGFQPGWDLFAPW------------KVDNF 160
           DVT+   ++     D          +V  A     G      +            ++  F
Sbjct: 59  DVTD-GERIDVVAADVLARYGRVDVLVNNA-----GRTQVGAFEETTERELRDLFELHVF 112

Query: 161 GTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV--FGLTLIAK-LQ 213
           G   L  A     R+RG    + ISS        GQ+    +   +     L  +++ L 
Sbjct: 113 GPARLTRALLPQMRERGSGSVVNISSFG------GQLSFAGFSAYSATKAALEQLSEGLA 166

Query: 214 AEQYIRKSGINYTIIRPGGLR 234
            E  +   GI   I+ PG  R
Sbjct: 167 DE--VAPFGIKVLIVEPGAFR 185

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 58/216 (26%)

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--------------KAKTT 106
           +  ++ + I + G  G  G  +           K  V  LD                   
Sbjct: 5   DDELENQTILITGGAGFVGSNLAFHFQENHPKAK--VVVLDKFRSNTLFSNNRPSSLGHF 62

Query: 107 LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV----CA-TGFQPGWDLFAPWKVDNFG 161
            +      +++ AD+      L        + +      + T      +     K +   
Sbjct: 63  KNLIGFKGEVIAADINN-PLDLRRLEKLHFDYLFHQAAVSDT---TMLNQELVMKTNYQA 118

Query: 162 TVNLVEACRKRGVNRFILISSILVNGAAM----------GQILNPAYIFLNVFGLTLIAK 211
            +NL+E  R +   + I  SS     A +          G+  +P     NV+G +   K
Sbjct: 119 FLNLLEIARSKKA-KVIYASS-----AGVYGNTKAPNVVGKNESP----ENVYGFS---K 165

Query: 212 LQAEQYIRKSGINYTIIRPGGLR-------NEPPTG 240
           L  ++++     +   +   GLR        E    
Sbjct: 166 LCMDEFVLSHSNDNVQV---GLRYFNVYGPREFYKE 198

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 49/219 (22%)

Query: 34  VSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAV 93
            +  K     ++S  +G    +        ++ + I V G  G  G  IV+ L  KG   
Sbjct: 21  TAAAKFERQHMDSPDLGTGGGSG-------IEGRMIIVTGGAGFIGSNIVKALNDKGITD 73

Query: 94  KAGVRDLDKAKTT-----LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV--CATGFQ 146
              +  +D  K       L   N +  + K D       ++     D EA+    A    
Sbjct: 74  ---ILVVDNLKDGTKFVNLVDLNIADYMDKEDFLI--QIMAGEEFGDVEAIFHEGACSST 128

Query: 147 PGWDLFAPWKVDNF-GTVNLVEACRKRGVNRFILISSILVNGAAM-----------GQIL 194
             WD       +N+  +  L+  C +R +  F+  SS     AA             +  
Sbjct: 129 TEWDG-KYMMDNNYQYSKELLHYCLEREI-PFLYASS-----AATYGGRTSDFIESREYE 181

Query: 195 NPAYIFLNVFGLTLIAKLQAEQYIR----KSGINYTIIR 229
            P    LNVFG +   K   ++Y+R    ++       R
Sbjct: 182 KP----LNVFGYS---KFLFDEYVRQILPEANSQIVGFR 213

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 68/192 (35%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           +++ V GATG  G+ + ++     +                       +  + ++ + +A
Sbjct: 3   RRVLVTGATGLLGRAVHKEFQQNNWHAVG-----------CGFRRARPKFEQVNLLDSNA 51

Query: 127 KLSEAIGDDSEAVV--CA--TGFQPGWDLFAP----------WKVDNFGTVNLVEACRKR 172
            +   I D    V+  CA             P           +++   + NL +     
Sbjct: 52  -VHHIIHDFQPHVIVHCAAER---------RPDVVENQPDAASQLNVDASGNLAKEAAAV 101

Query: 173 GVNRFILISSILVNGAAMGQILNPAYIF---------------LNVFGLTLIAKLQAEQY 217
           G    I ISS               Y+F               LN++G T   KL  E+ 
Sbjct: 102 GA-FLIYISS--------------DYVFDGTNPPYREEDIPAPLNLYGKT---KLDGEKA 143

Query: 218 IRKSGINYTIIR 229
           + ++ +   ++R
Sbjct: 144 VLENNLGAAVLR 155

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 25/181 (13%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGS 125
           ++ + G  G  G  + E+LL +       V  LD     +S+  ++P    V+ D++   
Sbjct: 2   RVLILGVNGFIGNHLTERLLREDHYE---VYGLDIGSDAISRFLNHPHFHFVEGDISI-H 57

Query: 126 AKLSEAIGDDSEAV---VCATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVNRFIL 179
           ++  E      + V   V      P      P   +++D    + ++  C K    R I 
Sbjct: 58  SEWIEYHVKKCDVVLPLVAIAT--PIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIF 114

Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLI------AKLQAEQ----YIRKSGINYTIIR 229
            S+  V G    +  +  +  L V  +         +K   ++    Y  K G+ +T+ R
Sbjct: 115 PSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFR 174

Query: 230 P 230
           P
Sbjct: 175 P 175

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 52/180 (28%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKA-GVRDLD-----KAKTTLSKDNPSLQIVKA-- 119
           KI + GA G  G+ I +QL  K   V    V+DLD           ++  P++ ++    
Sbjct: 14  KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNV-VINCAA 72

Query: 120 ----DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN 175
               D  E          +  +                 +K++  G  NL  A    G  
Sbjct: 73  HTAVDKCE----------EQYDLA---------------YKINAIGPKNLAAAAYSVGA- 106

Query: 176 RFILISSILV-NGAAMG-----QILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 229
             + IS+  V +G A         +NP     + +G T   KL+ E +++     Y I+R
Sbjct: 107 EIVQISTDYVFDGEAKEPITEFDEVNP----QSAYGKT---KLEGENFVKALNPKYYIVR 159

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 66  QKKIFVAGATGSSGKRIVEQLL---AKGFAVKAGVRDLDKAK--TTLSKDNPSLQIVKAD 120
              I + G     G  +V+ LL        +    R+ ++AK    L+K++ ++ I++ D
Sbjct: 21  MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEID 80

Query: 121 VT------EGSAKLSEAIGDDS 136
           +       +  A +     D  
Sbjct: 81  LRNFDAYDKLVADIEGVTKDQG 102

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 52/182 (28%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKGFAVKA-GVRDLD-----KAKTTLSKDNPSLQIVKA 119
           ++++ + GA G  GK++ E+L  + + +     + LD     + +  + +  P + I+  
Sbjct: 5   KERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHI-IIHC 63

Query: 120 ------DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG 173
                 D  E           + +                 + ++  G  N+  A +  G
Sbjct: 64  AAYTKVDQAE----------KERDLA---------------YVINAIGARNVAVASQLVG 98

Query: 174 VNRFILISSILV-NGAAMG-----QILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTI 227
             + + IS+  V  G             P    +N++G +   K   EQ++++    Y I
Sbjct: 99  A-KLVYISTDYVFQGDRPEGYDEFHNPAP----INIYGAS---KYAGEQFVKELHNKYFI 150

Query: 228 IR 229
           +R
Sbjct: 151 VR 152

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 34/138 (24%)

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAV----------KAGVRDLDKAKTTLSKD 110
           ++   +K+I + G  G  G  + ++L+  G  V          K  V             
Sbjct: 22  HMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW--------IG 73

Query: 111 NPSLQIVKADVTEGSAKLSEAIGDDSEAVV---CATGFQPGWDLFAP---WKVDNFGTVN 164
           + + +++  DV        E +  + + +          P   ++ P    K +  GT+N
Sbjct: 74  HENFELINHDVV-------EPLYIEVDQIYHLASPAS--PPNYMYNPIKTLKTNTIGTLN 124

Query: 165 LVEACRKRGVNRFILISS 182
           ++   ++ G  R +L S+
Sbjct: 125 MLGLAKRVGA-RLLLAST 141

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 25/123 (20%), Positives = 35/123 (28%), Gaps = 4/123 (3%)

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI 116
                 SVK KK  V   TG  G R    L  +G  V    R LDKA+      N   ++
Sbjct: 110 VKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKV 169

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCAT--GFQ--PGWDLFAPWKVDNFGTVNLVEACRKR 172
                              +  V  A   G +  P         ++     N        
Sbjct: 170 NVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIG 229

Query: 173 GVN 175
           G++
Sbjct: 230 GID 232

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKGFAVK--AGVRDLDKAKTTLSKDNPSLQIVKADVT- 122
              + V GA    G  +V+QL+         A  RD++KA    S  +  + ++   VT 
Sbjct: 3   PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC 62

Query: 123 -----EGSAKLSEAIGDDS 136
                   +K+ E +G D 
Sbjct: 63  DKSLDTFVSKVGEIVGSDG 81

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 19/73 (26%)

Query: 161 GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-- 218
              ++++   +      IL+SS     +      NP       +G +   KLQ EQ +  
Sbjct: 72  YLDHVLDILTRNTKKPAILLSS-----SIQATQDNP-------YGES---KLQGEQLLRE 116

Query: 219 --RKSGINYTIIR 229
              + G    I R
Sbjct: 117 YAEEYGNTVYIYR 129

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 26/83 (31%)

Query: 161 GTVNLVEACRKRGVNRFILISSILVNGAAMG----------QILNPAYIFLNVFGLTLIA 210
            +  L+  C +R +  F+  SS     A  G          +   P    LNV+G +   
Sbjct: 96  YSKELLHYCLEREI-PFLYASS----AATYGGRTSDFIESREYEKP----LNVYGYS--- 143

Query: 211 KLQAEQYIR----KSGINYTIIR 229
           K   ++Y+R    ++       R
Sbjct: 144 KFLFDEYVRQILPEANSQIVGFR 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.97
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.97
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.97
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.96
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.96
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.96
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.96
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.96
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.96
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.96
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.96
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.96
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.96
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.96
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.96
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.96
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.95
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.95
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.95
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.95
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.95
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.95
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.95
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.95
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.95
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.95
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.95
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.95
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.95
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.95
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.95
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.95
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.95
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.95
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.95
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.95
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.95
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.95
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.95
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.95
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.94
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.94
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.94
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.94
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.94
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.94
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.94
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.94
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.94
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.94
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.94
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.94
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.94
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.94
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.93
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.93
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.93
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.93
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.93
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.93
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.93
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.93
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.93
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.93
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.93
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.93
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.93
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.93
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.93
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.93
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.93
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.93
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.93
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.93
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.93
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.93
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.93
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.93
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.93
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.93
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.93
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.93
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.93
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.93
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.93
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.93
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.93
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.92
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.92
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.92
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.92
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.92
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.92
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.92
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.92
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.92
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.92
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.92
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.92
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.92
1spx_A	278	Short-chain reductase family member (5L265); paral	99.92
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.92
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.92
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.92
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.92
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.92
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.92
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.92
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.92
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.92
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.92
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.92
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.92
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.92
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.92
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.92
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.92
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.92
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.92
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.92
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.92
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.92
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.92
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.92
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.92
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.92
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.92
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.92
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.92
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.92
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.92
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.92
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.92
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.92
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.92
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.92
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.91
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.91
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.91
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.91
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.91
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.91
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.91
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.91
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.91
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.91
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.91
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.91
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.91
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.91
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.91
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.91
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.91
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.91
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.91
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.91
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.91
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.91
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.91
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.91
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.91
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.91
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.91
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.91
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.91
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.91
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.91
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.91
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.91
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.91
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.91
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.91
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.91
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.91
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.91
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.91
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.91
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.91
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.91
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.91
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.91
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.91
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.91
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.91
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.91
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.91
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.91
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.91
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.91
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.91
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.91
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.91
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.91
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.91
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.91
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.91
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.91
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.91
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.91
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.9
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.9
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.9
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.9
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.9
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.9
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.9
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.9
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.9
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.9
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.9
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.9
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.9
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.9
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.9
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.9
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.9
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.9
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.9
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.9
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.9
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.9
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.9
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.9
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.9
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.9
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.9
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.9
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.9
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.9
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.9
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.9
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.9
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.9
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.9
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.9
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.9
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.9
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.9
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.9
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.9
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.9
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.9
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.9
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.89
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.89
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.89
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.89
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.89
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.89
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.89
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.89
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.89
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.89
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.89
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.89
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.89
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.89
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.89
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.89
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.89
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.89
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.89
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.89
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.89
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.89
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.89
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.89
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.88
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.88
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.88
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.88
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.88
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.88
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.88
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.88
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.88
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.88
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.88
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.88
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.88
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.88
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.88
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.87
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.87
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.87
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.86
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.86
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.86
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.86
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.86
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.86
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.86
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.86
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.85
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.84
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.83
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.82
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.8
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.8
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.79
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.79
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.78
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.78
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.77
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.76
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.75
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.74
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.74
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.71
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.7
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.69
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.68
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.68
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.55
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.48
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.43
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.21
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.19
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	99.11
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	99.08
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	99.05
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	99.03
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.98
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.93
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.9
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.87
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.87
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.85
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.84
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.83
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.79
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.76
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.76
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.56
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.56
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.48
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.46
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.46
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.38
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.33
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.33
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.28
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.27
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.25
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.22
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.19
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.19
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.13
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.13
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.13
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.11
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.1
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.09
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.08
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.07
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	98.05
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.03
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.01
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.01
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.99
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.97
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.96
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.95
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.93
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.88
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.88
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.87
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.86
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.86
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	97.86
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.85
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	97.84
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.83
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.83
1lnq_A	336	MTHK channels, potassium channel related protein;	97.82
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.82
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.81
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.8
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.79
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.77
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.76
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.75
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.74
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.73
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.72
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.72
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.71
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.69
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.68
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.67
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.67
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	97.67
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.65
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.65
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.64
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.64
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.63
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.63
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.62
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.61
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.6
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.6
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.57
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.57
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.57
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.56
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.54
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.53
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.5
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.48
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.48
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.48
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.47
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.47
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.47
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.46
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.43
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.42
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.39
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.39
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.38
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.38
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.37
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.36
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.36
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.34
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.34
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.34
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.33
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.33
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.33
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.32
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.31
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.3
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.29
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	97.29
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.27
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.27
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.27
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.26
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.25
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.25
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.24
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.23
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	97.22
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.22
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.22
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.2
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.19
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.19
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.17
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.16
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.15
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.15
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.15
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.14
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.13
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.12
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.12
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.1
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.1
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.09
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.08
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.08
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	97.07
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.07
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.07
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.07
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.06
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.06
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.05
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	97.02
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.02
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.01
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	97.01
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	97.01
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.0
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.0
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.0
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	96.98
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.98
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.98
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.96
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.95
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.94
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.94
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.93
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.93
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.91
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.91
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.9
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.89
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.89
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.88
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	96.88
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.87
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.87
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.86
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.85
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.85

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.97  E-value=3e-30  Score=211.63  Aligned_cols=167  Identities=28%  Similarity=0.425  Sum_probs=139.1

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCe-EEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSL-QIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ..+++|+|+|||||||||++++++|+++|++|++++|++++.+....   .++ +++.+|++   +++.+.+.+ +|+||
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~---~~~~~~~~~Dl~---~~~~~~~~~-~D~vi   89 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE---RGASDIVVANLE---EDFSHAFAS-IDAVV   89 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH---TTCSEEEECCTT---SCCGGGGTT-CSEEE
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh---CCCceEEEcccH---HHHHHHHcC-CCEEE
Confidence            45679999999999999999999999999999999999877654432   468 99999998   456778888 99999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      ||||.....++...+++|+.++.+++++|++.++++||++||.+.+...        ..+ .+...|+.+|.++|+++++
T Consensus        90 ~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~--------~~~-~~~~~Y~~sK~~~e~~~~~  160 (236)
T 3e8x_A           90 FAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPD--------QGP-MNMRHYLVAKRLADDELKR  160 (236)
T ss_dssp             ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCGG--------GSC-GGGHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCCC--------CCh-hhhhhHHHHHHHHHHHHHH
Confidence            9999877677788899999999999999999999999999996443211        111 4568899999999999999


Q ss_pred             cCCcEEEEeCCcccCCCCCCceEe
Q 025456          221 SGINYTIIRPGGLRNEPPTGNIIM  244 (252)
Q Consensus       221 ~gi~~~~lrPg~i~~~~~~~~~~~  244 (252)
                      .|++++++|||+++|+...+.+..
T Consensus       161 ~gi~~~~lrpg~v~~~~~~~~~~~  184 (236)
T 3e8x_A          161 SSLDYTIVRPGPLSNEESTGKVTV  184 (236)
T ss_dssp             SSSEEEEEEECSEECSCCCSEEEE
T ss_pred             CCCCEEEEeCCcccCCCCCCeEEe
Confidence            999999999999999987766543

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.97  E-value=2.5e-30  Score=216.16  Aligned_cols=167  Identities=22%  Similarity=0.267  Sum_probs=142.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +||+|+||||+||||++++++|+++|++|++++|++.+..      ..+++++.+|++| .+++.+++.+ +|+||||||
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~------~~~~~~~~~Dl~d-~~~~~~~~~~-~D~vi~~Ag   73 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA------GPNEECVQCDLAD-ANAVNAMVAG-CDGIVHLGG   73 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC------CTTEEEEECCTTC-HHHHHHHHTT-CSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc------CCCCEEEEcCCCC-HHHHHHHHcC-CCEEEECCC
Confidence            4789999999999999999999999999999999875432      3579999999999 8999999998 999999999


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCC-CCCCcchhccchhhHHHHHHHHHHHHHH----
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG-QILNPAYIFLNVFGLTLIAKLQAEQYIR----  219 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~-~~~~~~~~~~~~~~~y~~sK~~~e~~~~----  219 (252)
                      .....+++..+++|+.|+.++++++++.+.++||++||..+|+.... .+..+ ..+..+...|+.+|.++|.+++    
T Consensus        74 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e-~~~~~~~~~Y~~sK~~~e~~~~~~a~  152 (267)
T 3rft_A           74 ISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGP-DVPARPDGLYGVSKCFGENLARMYFD  152 (267)
T ss_dssp             CCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCT-TSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHH
Confidence            87777777889999999999999999999999999999998864322 22222 2345667889999999998775    


Q ss_pred             HcCCcEEEEeCCcccCCCCCC
Q 025456          220 KSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       220 ~~gi~~~~lrPg~i~~~~~~~  240 (252)
                      ++|+++++|||+.++++...+
T Consensus       153 ~~g~~~~~vr~~~v~~~~~~~  173 (267)
T 3rft_A          153 KFGQETALVRIGSCTPEPNNY  173 (267)
T ss_dssp             HHCCCEEEEEECBCSSSCCST
T ss_pred             HhCCeEEEEEeecccCCCCCC
Confidence            579999999999999986544

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.97  E-value=2.3e-29  Score=204.09  Aligned_cols=164  Identities=29%  Similarity=0.472  Sum_probs=139.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|+||||+||||++++++|+++|++|++++|++++....     .+++++++|++|..+++.+++++ +|+||||||..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-----~~~~~~~~D~~d~~~~~~~~~~~-~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-----NNVKAVHFDVDWTPEEMAKQLHG-MDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-----TTEEEEECCTTSCHHHHHTTTTT-CSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-----CCceEEEecccCCHHHHHHHHcC-CCEEEECCcCC
Confidence            4799999999999999999999999999999998754332     57999999999845788899998 99999999976


Q ss_pred             CCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHH-HHcCCcE
Q 025456          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-RKSGINY  225 (252)
Q Consensus       147 ~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-~~~gi~~  225 (252)
                      .    ...+++|+.++.+++++|++.++++||++||.++++..   +..+  .+..+...|+.+|.++|+++ +..++++
T Consensus        75 ~----~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e--~~~~~~~~Y~~sK~~~e~~~~~~~~i~~  145 (219)
T 3dqp_A           75 G----KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG--AGFDALKDYYIAKHFADLYLTKETNLDY  145 (219)
T ss_dssp             T----SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS--HHHHHTHHHHHHHHHHHHHHHHSCCCEE
T ss_pred             C----CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc--cccccccHHHHHHHHHHHHHHhccCCcE
Confidence            4    34789999999999999999999999999998766432   2222  34456789999999999999 7789999


Q ss_pred             EEEeCCcccCCCCCCceEee
Q 025456          226 TIIRPGGLRNEPPTGNIIME  245 (252)
Q Consensus       226 ~~lrPg~i~~~~~~~~~~~~  245 (252)
                      +++|||+++++...+.+..+
T Consensus       146 ~ilrp~~v~g~~~~~~~~~~  165 (219)
T 3dqp_A          146 TIIQPGALTEEEATGLIDIN  165 (219)
T ss_dssp             EEEEECSEECSCCCSEEEES
T ss_pred             EEEeCceEecCCCCCccccC
Confidence            99999999999877766544

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.96  E-value=7.8e-30  Score=222.42  Aligned_cols=173  Identities=16%  Similarity=0.222  Sum_probs=143.9

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCC-CChHHHHHHHcCCCcEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT-EGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~-d~~~~~~~~~~~~~d~v  139 (252)
                      .++++|+|+||||+||||++|+++|+++ |++|++++|+.+.......  ..+++++.+|++ | .+.+.+++.+ +|+|
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~--~~~v~~~~~Dl~~d-~~~~~~~~~~-~d~V   95 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK--HERMHFFEGDITIN-KEWVEYHVKK-CDVI   95 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG--STTEEEEECCTTTC-HHHHHHHHHH-CSEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc--CCCeEEEeCccCCC-HHHHHHHhcc-CCEE
Confidence            3467899999999999999999999998 9999999998876554432  358999999999 7 8889999998 9999


Q ss_pred             EEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhc------cchhhHHHH
Q 025456          140 VCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF------LNVFGLTLI  209 (252)
Q Consensus       140 i~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~------~~~~~~y~~  209 (252)
                      ||+|+....    .++...+++|+.++.+++++|++.+ ++|||+||..+|+...+.+..+...+      .++.+.|+.
T Consensus        96 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~  174 (372)
T 3slg_A           96 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYAC  174 (372)
T ss_dssp             EECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHH
T ss_pred             EEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHH
Confidence            999997652    2455677899999999999999999 89999999999987665555444322      156678999


Q ss_pred             HHHHHHHHHHHc---CCcEEEEeCCcccCCCCC
Q 025456          210 AKLQAEQYIRKS---GINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       210 sK~~~e~~~~~~---gi~~~~lrPg~i~~~~~~  239 (252)
                      +|.++|++++..   +++++++||++++|+...
T Consensus       175 sK~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~~  207 (372)
T 3slg_A          175 SKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLD  207 (372)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEEEEECSEECSSCC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEccccccCCCcc
Confidence            999999998765   999999999999999754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.96  E-value=6.4e-30  Score=221.20  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=144.5

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cC-----CCCeEEEEeeCCCChHHHHHHHc
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KD-----NPSLQIVKADVTEGSAKLSEAIG  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~-----~~~~~~i~~Dl~d~~~~~~~~~~  133 (252)
                      +.+++|+|+||||+||||++|+++|+++|++|++++|+.........   ..     ..+++++.+|++| .+++.+++.
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~   99 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRD-LTTCEQVMK   99 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTC-HHHHHHHTT
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCC-HHHHHHHhc
Confidence            44568999999999999999999999999999999997643221111   00     0579999999999 899999999


Q ss_pred             CCCcEEEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          134 DDSEAVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       134 ~~~d~vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                      + +|+|||+||...    ..++...+++|+.++.+++++|++.++++|||+||..+|+...+.+.++.. +.++...|+.
T Consensus       100 ~-~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~  177 (351)
T 3ruf_A          100 G-VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAV  177 (351)
T ss_dssp             T-CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-CCCCCSHHHH
T ss_pred             C-CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCC-CCCCCChhHH
Confidence            8 999999999643    134556789999999999999999999999999999999877665555543 3466788999


Q ss_pred             HHHHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          210 AKLQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       210 sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      +|.++|++++    +.|++++++||++++|+...
T Consensus       178 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~  211 (351)
T 3ruf_A          178 TKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQD  211 (351)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCC
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCC
Confidence            9999998875    35999999999999998754

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=7e-29  Score=202.04  Aligned_cols=164  Identities=24%  Similarity=0.259  Sum_probs=133.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +|+|+||||+||||++++++|+++|++|++++|++++....    ..+++++.+|++| .+++.+++.+ +|+||||||.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~Dl~d-~~~~~~~~~~-~d~vi~~a~~   77 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE----NEHLKVKKADVSS-LDEVCEVCKG-ADAVISAFNP   77 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC----CTTEEEECCCTTC-HHHHHHHHTT-CSEEEECCCC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc----cCceEEEEecCCC-HHHHHHHhcC-CCEEEEeCcC
Confidence            58999999999999999999999999999999998765432    2679999999999 8999999998 9999999987


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH----Hc
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR----KS  221 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~~  221 (252)
                      ...  ....+++|+.++.+++++|++.++++||++||.++|....+...  ...+..+...|+.+|.++|.+++    +.
T Consensus        78 ~~~--~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~--~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~  153 (227)
T 3dhn_A           78 GWN--NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRL--MDSGEVPENILPGVKALGEFYLNFLMKEK  153 (227)
T ss_dssp             --------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEEG--GGTTCSCGGGHHHHHHHHHHHHHTGGGCC
T ss_pred             CCC--ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCcc--ccCCcchHHHHHHHHHHHHHHHHHHhhcc
Confidence            532  23478999999999999999999999999999887654433221  12234567889999999996553    46


Q ss_pred             CCcEEEEeCCcccCCCCC
Q 025456          222 GINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~~~  239 (252)
                      +++++++||++++|+...
T Consensus       154 ~~~~~ilrp~~v~g~~~~  171 (227)
T 3dhn_A          154 EIDWVFFSPAADMRPGVR  171 (227)
T ss_dssp             SSEEEEEECCSEEESCCC
T ss_pred             CccEEEEeCCcccCCCcc
Confidence            899999999999998754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.96  E-value=1.2e-28  Score=209.88  Aligned_cols=164  Identities=20%  Similarity=0.182  Sum_probs=139.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +|+|+||||+||||++|+++|+++|++|++++|++....  +    .+++++.+|++  .+++.+++.+ +|+|||+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~----~~~~~~~~Dl~--~~~~~~~~~~-~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA--I----NDYEYRVSDYT--LEDLINQLND-VDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----------CCEEEECCCC--HHHHHHHTTT-CSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc--C----CceEEEEcccc--HHHHHHhhcC-CCEEEEcccc
Confidence            589999999999999999999999999999999843322  2    27899999998  5889999998 9999999998


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH----c
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK----S  221 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~----~  221 (252)
                      ....++...+++|+.++.+++++|++.++++|||+||..+|+.....+..+.. +.++...|+.+|.++|++++.    .
T Consensus        73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~~~~~~~~~  151 (311)
T 3m2p_A           73 RGSQGKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKE-LPLPDLMYGVSKLACEHIGNIYSRKK  151 (311)
T ss_dssp             CCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTS-CCCCSSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCC-CCCCCchhHHHHHHHHHHHHHHHHHc
Confidence            76557778899999999999999999999999999999999876555554433 456678899999999998864    6


Q ss_pred             CCcEEEEeCCcccCCCCC
Q 025456          222 GINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~~~  239 (252)
                      |++++++||++++|+...
T Consensus       152 g~~~~ilRp~~v~G~~~~  169 (311)
T 3m2p_A          152 GLCIKNLRFAHLYGFNEK  169 (311)
T ss_dssp             CCEEEEEEECEEECSCC-
T ss_pred             CCCEEEEeeCceeCcCCC
Confidence            999999999999998764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.96  E-value=2e-28  Score=210.87  Aligned_cols=166  Identities=19%  Similarity=0.176  Sum_probs=133.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +|+|+||||+||||++++++|+++|++|++++|+++..+.+.   ..+++++.+|++| .+++.+++.+ +|+|||+||.
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~---~~~~~~~~~Dl~d-~~~~~~~~~~-~d~vih~a~~   87 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA---YLEPECRVAEMLD-HAGLERALRG-LDGVIFSAGY   87 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGG---GGCCEEEECCTTC-HHHHHHHTTT-CSEEEEC---
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhc---cCCeEEEEecCCC-HHHHHHHHcC-CCEEEECCcc
Confidence            469999999999999999999999999999999876544322   1368999999999 8999999998 9999999996


Q ss_pred             CC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCC--CCCCcchhccch----hhHHHHHHHHHHHH
Q 025456          146 QP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG--QILNPAYIFLNV----FGLTLIAKLQAEQY  217 (252)
Q Consensus       146 ~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~--~~~~~~~~~~~~----~~~y~~sK~~~e~~  217 (252)
                      ..  ..++...+++|+.++.+++++|++.++++|||+||..+|+...+  .+ ++ ..+.++    ...|+.+|.++|++
T Consensus        88 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E-~~~~~p~~~~~~~Y~~sK~~~e~~  165 (342)
T 2x4g_A           88 YPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HE-GLFYDSLPSGKSSYVLCKWALDEQ  165 (342)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CT-TCCCSSCCTTSCHHHHHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CC-CCCCCccccccChHHHHHHHHHHH
Confidence            54  34667788999999999999999999999999999999976543  22 33 233455    67899999999998


Q ss_pred             HHH---cCCcEEEEeCCcccCCCC
Q 025456          218 IRK---SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       218 ~~~---~gi~~~~lrPg~i~~~~~  238 (252)
                      ++.   .|++++++||++++|+..
T Consensus       166 ~~~~~~~g~~~~ilrp~~v~g~~~  189 (342)
T 2x4g_A          166 AREQARNGLPVVIGIPGMVLGELD  189 (342)
T ss_dssp             HHHHHHTTCCEEEEEECEEECSCC
T ss_pred             HHHHhhcCCcEEEEeCCceECCCC
Confidence            764   389999999999999865

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.96  E-value=1.5e-28  Score=211.22  Aligned_cols=170  Identities=18%  Similarity=0.269  Sum_probs=139.9

Q ss_pred             cccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--CCCcE
Q 025456           61 NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEA  138 (252)
Q Consensus        61 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~  138 (252)
                      +..+++|+|+||||+||||++|+++|+++|++|++++|+.....+... ...+++++.+|++| .+++.+++.  + +|+
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~l~~v~~~~~Dl~d-~~~~~~~~~~~~-~D~   91 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP-PVAGLSVIEGSVTD-AGLLERAFDSFK-PTH   91 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSC-SCTTEEEEECCTTC-HHHHHHHHHHHC-CSE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhh-ccCCceEEEeeCCC-HHHHHHHHhhcC-CCE
Confidence            355678999999999999999999999999999999997654332222 12578999999999 888999988  7 999


Q ss_pred             EEEcCCCCCC---CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCC--CCCcchhccchhhHHHHHHHH
Q 025456          139 VVCATGFQPG---WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ--ILNPAYIFLNVFGLTLIAKLQ  213 (252)
Q Consensus       139 vi~~ag~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~--~~~~~~~~~~~~~~y~~sK~~  213 (252)
                      ||||||....   .++.  +++|+.++.+++++|++.++++||++||..+|+.....  +.++..   ++...|+.+|.+
T Consensus        92 vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~---~~~~~Y~~sK~~  166 (330)
T 2pzm_A           92 VVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT---APFTSYGISKTA  166 (330)
T ss_dssp             EEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC---CCCSHHHHHHHH
T ss_pred             EEECCccCCCccccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC---CCCChHHHHHHH
Confidence            9999997543   1222  78999999999999999899999999999998765332  333332   456789999999


Q ss_pred             HHHHHHHcCCcEEEEeCCcccCCCC
Q 025456          214 AEQYIRKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       214 ~e~~~~~~gi~~~~lrPg~i~~~~~  238 (252)
                      +|++++..+++++++||++++++..
T Consensus       167 ~e~~~~~~~~~~~~iR~~~v~gp~~  191 (330)
T 2pzm_A          167 GEAFLMMSDVPVVSLRLANVTGPRL  191 (330)
T ss_dssp             HHHHHHTCSSCEEEEEECEEECTTC
T ss_pred             HHHHHHHcCCCEEEEeeeeeECcCC
Confidence            9999988899999999999999875

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.96  E-value=5.8e-29  Score=215.45  Aligned_cols=181  Identities=16%  Similarity=0.118  Sum_probs=145.3

Q ss_pred             hhhhhcccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh----hhhccccC----CCCeEEEEeeCCCChHH
Q 025456           56 EEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----AKTTLSKD----NPSLQIVKADVTEGSAK  127 (252)
Q Consensus        56 ~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~----~~~~~~~~----~~~~~~i~~Dl~d~~~~  127 (252)
                      ....+..++++|+|+||||+||||++++++|+++|++|++++|+...    ........    ..+++++.+|++| .++
T Consensus        17 ~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~   95 (352)
T 1sb8_A           17 EELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRN-LDD   95 (352)
T ss_dssp             HHHHHHHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTS-HHH
T ss_pred             HhhchhcCccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCC-HHH
Confidence            33344455678999999999999999999999999999999997532    11111000    2578999999999 889


Q ss_pred             HHHHHcCCCcEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          128 LSEAIGDDSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       128 ~~~~~~~~~d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +.+++.+ +|+||||||....    .++...+++|+.++.+++++|++.++++|||+||..+|+...+.+.++.. +.++
T Consensus        96 ~~~~~~~-~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~-~~~~  173 (352)
T 1sb8_A           96 CNNACAG-VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDT-IGKP  173 (352)
T ss_dssp             HHHHHTT-CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-CCCC
T ss_pred             HHHHhcC-CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCC-CCCC
Confidence            9999998 9999999997541    35566788999999999999999999999999999999876554544433 3456


Q ss_pred             hhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          204 FGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ...|+.+|.++|++++    +.|++++++||++++|+...
T Consensus       174 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~  213 (352)
T 1sb8_A          174 LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  213 (352)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             CChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCC
Confidence            7889999999998875    35999999999999998753

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.96  E-value=2.3e-28  Score=210.99  Aligned_cols=174  Identities=16%  Similarity=0.131  Sum_probs=136.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhh-hhcccc--CCCCeEEEEeeCCCChHHHHHHHcC-CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKA-KTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD-DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~-~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d  137 (252)
                      +++|+|+|||||||||++|+++|+++|  ++|++++|..... ...+..  ...+++++.+|++| .+.+.+++.+ ++|
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d  100 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQN-GELLEHVIKERDVQ  100 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC-HHHHHHHHHHHTCC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCC-HHHHHHHHhhcCCC
Confidence            467999999999999999999999999  6788887764221 111111  23589999999999 8889888875 599


Q ss_pred             EEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCC-CCCCCcchhccchhhHHHHHHH
Q 025456          138 AVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-GQILNPAYIFLNVFGLTLIAKL  212 (252)
Q Consensus       138 ~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~-~~~~~~~~~~~~~~~~y~~sK~  212 (252)
                      +|||+||....    .++...+++|+.++.+++++|++.++++|||+||..+|+... ..+..+. .+.++...|+.+|.
T Consensus       101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~-~~~~p~~~Y~~sK~  179 (346)
T 4egb_A          101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-TPLAPNSPYSSSKA  179 (346)
T ss_dssp             EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT-SCCCCCSHHHHHHH
T ss_pred             EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCC-CCCCCCChhHHHHH
Confidence            99999997542    356677899999999999999999999999999999998763 3334443 34567788999999


Q ss_pred             HHHHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          213 QAEQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       213 ~~e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      ++|++++.    .|++++++||++++|+...
T Consensus       180 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~  210 (346)
T 4egb_A          180 SADMIALAYYKTYQLPVIVTRCSNNYGPYQY  210 (346)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHHHHhCCCEEEEeecceeCcCCC
Confidence            99988764    6999999999999998753

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.96  E-value=2.1e-27  Score=190.00  Aligned_cols=156  Identities=23%  Similarity=0.371  Sum_probs=131.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +|+|+||||+|+||++++++|+++|++|++++|++++....   ...+++++.+|++| .+++.+++++ +|+|||++|.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~---~~~~~~~~~~D~~~-~~~~~~~~~~-~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE---GPRPAHVVVGDVLQ-AADVDKTVAG-QDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS---SCCCSEEEESCTTS-HHHHHHHHTT-CSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc---cCCceEEEEecCCC-HHHHHHHHcC-CCEEEECccC
Confidence            47999999999999999999999999999999987654332   13578999999999 8999999998 9999999997


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCcE
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINY  225 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~  225 (252)
                      ....+   ..++|+.++.++++++++.++++||++||..+|+.....+        .+...|+.+|.++|+++++.++++
T Consensus        78 ~~~~~---~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~--------~~~~~y~~~K~~~e~~~~~~~i~~  146 (206)
T 1hdo_A           78 RNDLS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP--------PRLQAVTDDHIRMHKVLRESGLKY  146 (206)
T ss_dssp             TTCCS---CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSC--------GGGHHHHHHHHHHHHHHHHTCSEE
T ss_pred             CCCCC---ccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccccc--------ccchhHHHHHHHHHHHHHhCCCCE
Confidence            55422   3468999999999999999999999999998876442211        146789999999999999999999


Q ss_pred             EEEeCCcccCCC
Q 025456          226 TIIRPGGLRNEP  237 (252)
Q Consensus       226 ~~lrPg~i~~~~  237 (252)
                      +++||+.+....
T Consensus       147 ~~lrp~~~~~~~  158 (206)
T 1hdo_A          147 VAVMPPHIGDQP  158 (206)
T ss_dssp             EEECCSEEECCC
T ss_pred             EEEeCCcccCCC
Confidence            999999984433

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.96  E-value=1.4e-28  Score=211.80  Aligned_cols=171  Identities=18%  Similarity=0.235  Sum_probs=140.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHc--CCCcE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG--DDSEA  138 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~  138 (252)
                      ++|+|+||||+||||++++++|+++|++|++++|+.+........    ...++.++.+|++| .+++.+++.  + +|+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~-~d~   81 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD-ERALARIFDAHP-ITA   81 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTC-HHHHHHHHHHSC-CCE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCC-HHHHHHHHhccC-CcE
Confidence            468999999999999999999999999999999976544322110    13578999999999 899999987  6 999


Q ss_pred             EEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHH
Q 025456          139 VVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       139 vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (252)
                      ||||||....    .++.+.+++|+.++.+++++|++.++++||++||..+|+.....+.++.. +..+.+.|+.+|.++
T Consensus        82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~-~~~~~~~Y~~sK~~~  160 (341)
T 3enk_A           82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETF-PLSATNPYGQTKLMA  160 (341)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTS-CCBCSSHHHHHHHHH
T ss_pred             EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCC-CCCCCChhHHHHHHH
Confidence            9999997541    23446678999999999999999999999999999999876555555443 345678899999999


Q ss_pred             HHHHHH----c-CCcEEEEeCCcccCCCC
Q 025456          215 EQYIRK----S-GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       215 e~~~~~----~-gi~~~~lrPg~i~~~~~  238 (252)
                      |++++.    . +++++++||++++|+..
T Consensus       161 e~~~~~~~~~~~~~~~~~lRp~~v~G~~~  189 (341)
T 3enk_A          161 EQILRDVEAADPSWRVATLRYFNPVGAHE  189 (341)
T ss_dssp             HHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred             HHHHHHHhhcCCCceEEEEeeccccCCcc
Confidence            998864    3 59999999999999864

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.96  E-value=2.7e-28  Score=209.12  Aligned_cols=167  Identities=19%  Similarity=0.247  Sum_probs=138.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--CCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~vi~~a  143 (252)
                      ||+|+||||+||||++++++|+++|++|++++|......+.+.   .+++++.+|++| .+++.+++.  + +|+|||+|
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~D~~~-~~~~~~~~~~~~-~d~vih~a   75 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAIT---EGAKFYNGDLRD-KAFLRDVFTQEN-IEAVMHFA   75 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSC---TTSEEEECCTTC-HHHHHHHHHHSC-EEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcC---CCcEEEECCCCC-HHHHHHHHhhcC-CCEEEECC
Confidence            4789999999999999999999999999999987654332222   378999999999 888998888  7 99999999


Q ss_pred             CCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH
Q 025456          144 GFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (252)
Q Consensus       144 g~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (252)
                      |....    .++...+++|+.++.+++++|++.++++||++||..+|+.....+.++.. +..+...|+.+|.++|++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~-~~~~~~~Y~~sK~~~e~~~~  154 (330)
T 2c20_A           76 ADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEET-MTNPTNTYGETKLAIEKMLH  154 (330)
T ss_dssp             CCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTS-CCCCSSHHHHHHHHHHHHHH
T ss_pred             cccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCC-CCCCCChHHHHHHHHHHHHH
Confidence            97542    24556788999999999999999999999999999999865544444433 34567889999999998876


Q ss_pred             H----cCCcEEEEeCCcccCCCC
Q 025456          220 K----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       220 ~----~gi~~~~lrPg~i~~~~~  238 (252)
                      .    .|++++++||++++|+..
T Consensus       155 ~~~~~~~~~~~ilrp~~v~G~~~  177 (330)
T 2c20_A          155 WYSQASNLRYKIFRYFNVAGATP  177 (330)
T ss_dssp             HHHHTSSCEEEEEECSEEECCCT
T ss_pred             HHHHHhCCcEEEEecCcccCCCC
Confidence            4    489999999999999863

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.96  E-value=5.1e-28  Score=211.78  Aligned_cols=170  Identities=18%  Similarity=0.099  Sum_probs=139.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      .+||+|+||||+||||++|+++|+++|++|++++|+.+.....   ...+++++.+|++| .+++.+++.+ +|+|||+|
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~v~~~~~Dl~d-~~~~~~~~~~-~d~Vih~A  101 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE---DMFCDEFHLVDLRV-MENCLKVTEG-VDHVFNLA  101 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG---GGTCSEEEECCTTS-HHHHHHHHTT-CSEEEECC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh---ccCCceEEECCCCC-HHHHHHHhCC-CCEEEECc
Confidence            3578999999999999999999999999999999987543321   12468999999999 8899999998 99999999


Q ss_pred             CCCC-----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCC-----CCCCcch-hccchhhHHHHHHH
Q 025456          144 GFQP-----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG-----QILNPAY-IFLNVFGLTLIAKL  212 (252)
Q Consensus       144 g~~~-----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~-----~~~~~~~-~~~~~~~~y~~sK~  212 (252)
                      |...     ..++...+++|+.++.+++++|++.++++|||+||..+|+....     .+..+.. .+..+...|+.+|.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK~  181 (379)
T 2c5a_A          102 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKL  181 (379)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHH
T ss_pred             eecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhHHHHH
Confidence            9654     24556678899999999999999999999999999999875432     1122222 13455678999999


Q ss_pred             HHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          213 QAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       213 ~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      ++|++++    +.|++++++||++++|+..
T Consensus       182 ~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~  211 (379)
T 2c5a_A          182 ATEELCKHYNKDFGIECRIGRFHNIYGPFG  211 (379)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCceeCcCC
Confidence            9998775    3599999999999999864

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.96  E-value=4.8e-28  Score=210.50  Aligned_cols=172  Identities=12%  Similarity=0.029  Sum_probs=140.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHH--CCCeEEEeecCchhh----------hhccccCCCCeEEEEeeCCCChHHHHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLA--KGFAVKAGVRDLDKA----------KTTLSKDNPSLQIVKADVTEGSAKLSE  130 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~--~G~~V~~~~r~~~~~----------~~~~~~~~~~~~~i~~Dl~d~~~~~~~  130 (252)
                      ++++|+|+||||+||||++|+++|++  +|++|++++|+....          .........++.++.+|++| .+++.+
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~   85 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINN-PLDLRR   85 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTC-HHHHHH
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCC-HHHHHH
Confidence            45689999999999999999999999  999999999976410          00111123568999999999 888888


Q ss_pred             H-HcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          131 A-IGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       131 ~-~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      + ..+ +|+||||||...  ..++...+++|+.++.+++++|++.+++ |||+||.++|+.... +..+.. +.++.+.|
T Consensus        86 ~~~~~-~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~-~~~E~~-~~~p~~~Y  161 (362)
T 3sxp_A           86 LEKLH-FDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKA-PNVVGK-NESPENVY  161 (362)
T ss_dssp             HTTSC-CSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCS-SBCTTS-CCCCSSHH
T ss_pred             hhccC-CCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCC-CCCCCC-CCCCCChh
Confidence            8 667 999999999654  3456677899999999999999999975 999999999987654 444433 45677889


Q ss_pred             HHHHHHHHHHHHHcC--CcEEEEeCCcccCCCCC
Q 025456          208 LIAKLQAEQYIRKSG--INYTIIRPGGLRNEPPT  239 (252)
Q Consensus       208 ~~sK~~~e~~~~~~g--i~~~~lrPg~i~~~~~~  239 (252)
                      +.+|.++|++++...  ++++++||++++|+...
T Consensus       162 ~~sK~~~E~~~~~~~~~~~~~~lR~~~v~Gp~~~  195 (362)
T 3sxp_A          162 GFSKLCMDEFVLSHSNDNVQVGLRYFNVYGPREF  195 (362)
T ss_dssp             HHHHHHHHHHHHHTTTTSCEEEEEECSEESTTCG
T ss_pred             HHHHHHHHHHHHHHhccCCEEEEEeCceeCcCCC
Confidence            999999999998754  89999999999998754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.95  E-value=1.6e-28  Score=212.13  Aligned_cols=161  Identities=24%  Similarity=0.211  Sum_probs=133.0

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      .+.++|+||||||+||||++|+++|+++|++|++++|+++.         .+++++.+|++| .+++.+++.+ +|+|||
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---------~~~~~~~~Dl~d-~~~~~~~~~~-~d~vih   83 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG---------TGGEEVVGSLED-GQALSDAIMG-VSAVLH   83 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS---------SCCSEEESCTTC-HHHHHHHHTT-CSEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC---------CCccEEecCcCC-HHHHHHHHhC-CCEEEE
Confidence            34568999999999999999999999999999999998643         467889999999 8999999998 999999


Q ss_pred             cCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeecc--CCCCCCCcchhccchhhHHHHHHHHHHHH
Q 025456          142 ATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA--AMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (252)
Q Consensus       142 ~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~--~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (252)
                      +|+....  .++...+++|+.++.+++++|++.++++|||+||..+|+.  ....+..+. .+..+...|+.+|.++|++
T Consensus        84 ~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~-~~~~~~~~Y~~sK~~~E~~  162 (347)
T 4id9_A           84 LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTED-HPLCPNSPYGLTKLLGEEL  162 (347)
T ss_dssp             CCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTT-SCCCCCSHHHHHHHHHHHH
T ss_pred             CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCC-CCCCCCChHHHHHHHHHHH
Confidence            9987542  2235678999999999999999999999999999999987  333344443 2456678899999999988


Q ss_pred             HH----HcCCcEEEEeCCccc
Q 025456          218 IR----KSGINYTIIRPGGLR  234 (252)
Q Consensus       218 ~~----~~gi~~~~lrPg~i~  234 (252)
                      ++    +.+++++++||++++
T Consensus       163 ~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          163 VRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHhcCCceEEEccceEe
Confidence            75    468999999999999

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.95  E-value=2.2e-28  Score=213.97  Aligned_cols=172  Identities=16%  Similarity=0.167  Sum_probs=134.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +++|+|+||||+||||++|+++|+++| ++|++++|+.+.....+. ...+++++.+|++| .+++.+++.+ +|+|||+
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~-~~~~v~~~~~Dl~d-~~~l~~~~~~-~d~Vih~  106 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP-DHPAVRFSETSITD-DALLASLQDE-YDYVFHL  106 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC-CCTTEEEECSCTTC-HHHHHHCCSC-CSEEEEC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc-CCCceEEEECCCCC-HHHHHHHhhC-CCEEEEC
Confidence            467899999999999999999999999 999999998654332222 24579999999999 8889999988 9999999


Q ss_pred             CCCCCC----CCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceeeccCCCCCCC--cchh--cc-chhhHHHHHHH
Q 025456          143 TGFQPG----WDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAMGQILN--PAYI--FL-NVFGLTLIAKL  212 (252)
Q Consensus       143 ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~~~~~~~~~~--~~~~--~~-~~~~~y~~sK~  212 (252)
                      ||....    .++...+++|+.++.+++++|++. ++++||++||..+|+...+.+..  +...  +. .+...|+.+|.
T Consensus       107 A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~~sK~  186 (377)
T 2q1s_A          107 ATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKI  186 (377)
T ss_dssp             CCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCSSCCCSHHHHHHH
T ss_pred             CCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCchHHHHH
Confidence            997542    245567889999999999999998 88999999999999865443333  3321  23 55678999999


Q ss_pred             HHHHHHHH----cCCcEEEEeCCcccCCCC
Q 025456          213 QAEQYIRK----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       213 ~~e~~~~~----~gi~~~~lrPg~i~~~~~  238 (252)
                      ++|++++.    .|++++++||++++|+..
T Consensus       187 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          187 FGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            99988764    599999999999999876

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.95  E-value=5.1e-28  Score=206.67  Aligned_cols=167  Identities=16%  Similarity=0.226  Sum_probs=136.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~  142 (252)
                      .++++|+||||+||||++++++|+++|++|++++|+.+. ..      .+++++.+|++| .+++.+++.+ ++|+||||
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~------l~~~~~~~Dl~d-~~~~~~~~~~~~~d~vih~   81 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL------PNVEMISLDIMD-SQRVKKVISDIKPDYIFHL   81 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC------TTEEEEECCTTC-HHHHHHHHHHHCCSEEEEC
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc------ceeeEEECCCCC-HHHHHHHHHhcCCCEEEEc
Confidence            357999999999999999999999999999999998654 21      168999999999 8888888864 48999999


Q ss_pred             CCCCC----CCCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceeeccC--CCCCCCcchhccchhhHHHHHHHHHH
Q 025456          143 TGFQP----GWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAA--MGQILNPAYIFLNVFGLTLIAKLQAE  215 (252)
Q Consensus       143 ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~~~~--~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (252)
                      ||...    ..++...+++|+.|+.+++++|++. ++++||++||..+|+..  ...+.++.. +..+...|+.+|.++|
T Consensus        82 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~-~~~~~~~Y~~sK~~~E  160 (321)
T 2pk3_A           82 AAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEEN-QLRPMSPYGVSKASVG  160 (321)
T ss_dssp             CSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTS-CCBCCSHHHHHHHHHH
T ss_pred             CcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCC-CCCCCCccHHHHHHHH
Confidence            99754    2356677899999999999999876 58899999999999864  333444432 3456788999999999


Q ss_pred             HHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          216 QYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       216 ~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      ++++.    .|++++++||++++|+...
T Consensus       161 ~~~~~~~~~~gi~~~ilrp~~v~g~~~~  188 (321)
T 2pk3_A          161 MLARQYVKAYGMDIIHTRTFNHIGPGQS  188 (321)
T ss_dssp             HHHHHHHHHHCCEEEEEEECEEECTTCC
T ss_pred             HHHHHHHHHcCCCEEEEEeCcccCcCCC
Confidence            98764    4999999999999998764

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.95  E-value=2.8e-28  Score=207.44  Aligned_cols=165  Identities=19%  Similarity=0.195  Sum_probs=137.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|+||||+||||++|+++|+++|++|++++|+.+......   ..+++++.+|++| .+ +.+.+.+  |+|||+||..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~Dl~d-~~-~~~~~~~--d~vih~A~~~   73 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV---NPSAELHVRDLKD-YS-WGAGIKG--DVVFHFAANP   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS---CTTSEEECCCTTS-TT-TTTTCCC--SEEEECCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc---CCCceEEECcccc-HH-HHhhcCC--CEEEECCCCC
Confidence            58999999999999999999999999999999876544332   3678999999999 66 7777765  9999999864


Q ss_pred             C----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH--
Q 025456          147 P----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK--  220 (252)
Q Consensus       147 ~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~--  220 (252)
                      .    ..++...+++|+.++.+++++|++.++++|||+||..+|+.....+..+. .+..+...|+.+|.++|++++.  
T Consensus        74 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-~~~~p~~~Y~~sK~~~e~~~~~~~  152 (312)
T 3ko8_A           74 EVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-EPYKPISVYGAAKAAGEVMCATYA  152 (312)
T ss_dssp             SSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-SCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHHHH
Confidence            3    23455667899999999999999999999999999999987665555443 3456678999999999987754  


Q ss_pred             --cCCcEEEEeCCcccCCCCC
Q 025456          221 --SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       221 --~gi~~~~lrPg~i~~~~~~  239 (252)
                        .|++++++||++++|+...
T Consensus       153 ~~~g~~~~~lrp~~v~g~~~~  173 (312)
T 3ko8_A          153 RLFGVRCLAVRYANVVGPRLR  173 (312)
T ss_dssp             HHHCCEEEEEEECEEECTTCC
T ss_pred             HHhCCCEEEEeeccccCcCCC
Confidence              5999999999999998754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.95  E-value=4.6e-28  Score=210.09  Aligned_cols=173  Identities=21%  Similarity=0.170  Sum_probs=138.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      +++|+|+||||+||||++|+++|+++|++|++++|+++........  ...+++++.+|++| .+++.+++.+ ++|+||
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~vi   85 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD-QNKLLESIREFQPEIVF   85 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccC-HHHHHHHHHhcCCCEEE
Confidence            4578999999999999999999999999999999987554322110  23578999999999 8888888865 489999


Q ss_pred             EcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCC-CCCCcchhccchhhHHHHHHHHH
Q 025456          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMG-QILNPAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       141 ~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~-~~~~~~~~~~~~~~~y~~sK~~~  214 (252)
                      ||||...    ..++...+++|+.++.+++++|++.+ +++||++||..+|+.... .+..+. .+..+...|+.+|.++
T Consensus        86 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~-~~~~~~~~Y~~sK~~~  164 (357)
T 1rkx_A           86 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-EAMGGYDPYSNSKGCA  164 (357)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-SCBCCSSHHHHHHHHH
T ss_pred             ECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCC-CCCCCCCccHHHHHHH
Confidence            9999643    23455678899999999999999876 789999999999986543 122222 2345667899999999


Q ss_pred             HHHHHHc-------------CCcEEEEeCCcccCCCC
Q 025456          215 EQYIRKS-------------GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       215 e~~~~~~-------------gi~~~~lrPg~i~~~~~  238 (252)
                      |++++..             |++++++||++++|+..
T Consensus       165 e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~  201 (357)
T 1rkx_A          165 ELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGD  201 (357)
T ss_dssp             HHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTC
T ss_pred             HHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCC
Confidence            9887542             99999999999999865

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.95  E-value=4.1e-28  Score=202.45  Aligned_cols=162  Identities=20%  Similarity=0.191  Sum_probs=136.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +|+|+||||+||||++++++|+++|++|++++|++...   .   ..+++++.+|++| .+++.+++.+ +|+||||||.
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~---~~~~~~~~~Dl~d-~~~~~~~~~~-~d~vi~~a~~   73 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA---A---EAHEEIVACDLAD-AQAVHDLVKD-CDGIIHLGGV   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCC---C---CTTEEECCCCTTC-HHHHHHHHTT-CSEEEECCSC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccc---c---CCCccEEEccCCC-HHHHHHHHcC-CCEEEECCcC
Confidence            57999999999999999999999999999999986532   1   1468899999999 8999999998 9999999997


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCC-CCCCCcchhccchhhHHHHHHHHHHHHHH----H
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-GQILNPAYIFLNVFGLTLIAKLQAEQYIR----K  220 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~-~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~  220 (252)
                      ....++...+++|+.++.++++++++.++++||++||..+|+... ..+.++. .+.++...|+.+|.++|.+++    +
T Consensus        74 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~-~~~~~~~~Y~~sK~~~e~~~~~~~~~  152 (267)
T 3ay3_A           74 SVERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE-VPRRPDSLYGLSKCFGEDLASLYYHK  152 (267)
T ss_dssp             CSCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT-SCCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            755556677889999999999999999999999999999987643 2333333 344567889999999998875    3


Q ss_pred             cCCcEEEEeCCcccCC
Q 025456          221 SGINYTIIRPGGLRNE  236 (252)
Q Consensus       221 ~gi~~~~lrPg~i~~~  236 (252)
                      .+++++++||+++++.
T Consensus       153 ~gi~~~~lrp~~v~~~  168 (267)
T 3ay3_A          153 FDIETLNIRIGSCFPK  168 (267)
T ss_dssp             TCCCEEEEEECBCSSS
T ss_pred             cCCCEEEEeceeecCC
Confidence            6899999999999753

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.95  E-value=2.5e-28  Score=205.65  Aligned_cols=163  Identities=21%  Similarity=0.180  Sum_probs=134.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      |++|+|+||| +||||++|+++|+++|++|++++|+.+..       ..+++++.+|++| .+++.+++.+++|+|||+|
T Consensus         1 M~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~~~~~~~~Dl~d-~~~~~~~~~~~~d~vih~a   71 (286)
T 3gpi_A            1 MSLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-------PAGVQTLIADVTR-PDTLASIVHLRPEILVYCV   71 (286)
T ss_dssp             -CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-------CTTCCEEECCTTC-GGGCTTGGGGCCSEEEECH
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-------ccCCceEEccCCC-hHHHHHhhcCCCCEEEEeC
Confidence            3478999999 59999999999999999999999986542       2578999999999 7888888775699999999


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCC
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI  223 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi  223 (252)
                      |... .++...+++|+.++.+++++|++.++++|||+||.++|+...+.+..+.. +.++.+.|+.+|.++|++ +.. +
T Consensus        72 ~~~~-~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~-~~~-~  147 (286)
T 3gpi_A           72 AASE-YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDT-PPIAKDFSGKRMLEAEAL-LAA-Y  147 (286)
T ss_dssp             HHHH-HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTS-CCCCCSHHHHHHHHHHHH-GGG-S
T ss_pred             CCCC-CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCC-CCCCCChhhHHHHHHHHH-Hhc-C
Confidence            8643 45667789999999999999999999999999999999877555544433 455678899999999999 777 9


Q ss_pred             cEEEEeCCcccCCCCC
Q 025456          224 NYTIIRPGGLRNEPPT  239 (252)
Q Consensus       224 ~~~~lrPg~i~~~~~~  239 (252)
                      +++++||++++|+...
T Consensus       148 ~~~ilR~~~v~G~~~~  163 (286)
T 3gpi_A          148 SSTILRFSGIYGPGRL  163 (286)
T ss_dssp             SEEEEEECEEEBTTBC
T ss_pred             CeEEEecccccCCCch
Confidence            9999999999998753

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.95  E-value=2e-27  Score=204.24  Aligned_cols=172  Identities=19%  Similarity=0.154  Sum_probs=137.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchh--hhhccc-cCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDK--AKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~--~~~~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ++|+|+||||+||||++++++|+++|  ++|++++|....  .+.... ....+++++.+|++| .+++.+++.+ +|+|
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~v   79 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVAD-YELVKELVRK-VDGV   79 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC-HHHHHHHHHT-CSEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCC-HHHHHHHhhC-CCEE
Confidence            45789999999999999999999986  899999986421  111111 013579999999999 8889999988 9999


Q ss_pred             EEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHH
Q 025456          140 VCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       140 i~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (252)
                      |||||....    .++...+++|+.++.+++++|++.+. ++||++||..+||.....+.++.. +..+...|+.+|.++
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~-~~~~~~~Y~~sK~~~  158 (336)
T 2hun_A           80 VHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEND-RLMPSSPYSATKAAS  158 (336)
T ss_dssp             EECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTB-CCCCCSHHHHHHHHH
T ss_pred             EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCC-CCCCCCccHHHHHHH
Confidence            999997541    35667789999999999999998775 699999999999865444444432 345567899999999


Q ss_pred             HHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          215 EQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       215 e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      |++++.    .|++++++||++++|+...
T Consensus       159 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~  187 (336)
T 2hun_A          159 DMLVLGWTRTYNLNASITRCTNNYGPYQF  187 (336)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHHhCCCEEEEeeeeeeCcCCC
Confidence            988753    6899999999999998753

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.95  E-value=1.4e-27  Score=203.54  Aligned_cols=166  Identities=22%  Similarity=0.202  Sum_probs=132.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      ||+|+||||+||||++|+++|+++|+ ++++++........   ...+++++.+|++|  +++.+++.+ +|+|||+|+.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~-~v~~~~~~~~~~~~---~~~~~~~~~~Dl~~--~~~~~~~~~-~d~vih~a~~   73 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSSGNEEF---VNEAARLVKADLAA--DDIKDYLKG-AEEVWHIAAN   73 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTSC-EEEECCCSSCCGGG---SCTTEEEECCCTTT--SCCHHHHTT-CSEEEECCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEcCCCCChhh---cCCCcEEEECcCCh--HHHHHHhcC-CCEEEECCCC
Confidence            47899999999999999999999994 55555543322222   23578999999987  567888888 9999999985


Q ss_pred             CC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH--
Q 025456          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR--  219 (252)
Q Consensus       146 ~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~--  219 (252)
                      ..    ..++...+++|+.++.+++++|++.++++|||+||..+|+.....+..+.. +..+...|+.+|.++|.+++  
T Consensus        74 ~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~-~~~~~~~Y~~sK~~~e~~~~~~  152 (313)
T 3ehe_A           74 PDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDY-PTHPISLYGASKLACEALIESY  152 (313)
T ss_dssp             CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTS-CCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Confidence            43    234556789999999999999999999999999999999876655554433 45667889999999998875  


Q ss_pred             --HcCCcEEEEeCCcccCCCCC
Q 025456          220 --KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       220 --~~gi~~~~lrPg~i~~~~~~  239 (252)
                        +.|++++++||++++|+...
T Consensus       153 ~~~~g~~~~ilRp~~v~G~~~~  174 (313)
T 3ehe_A          153 CHTFDMQAWIYRFANVIGRRST  174 (313)
T ss_dssp             HHHTTCEEEEEECSCEESTTCC
T ss_pred             HHhcCCCEEEEeeccccCcCCC
Confidence              36999999999999998654

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.95  E-value=1.7e-27  Score=204.94  Aligned_cols=167  Identities=25%  Similarity=0.311  Sum_probs=133.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      ..++||+|+||||+||||++++++|+++|++|++++|+.....+.+. ...+++++.+|++| .+++.+++.+ ++|+||
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~-~~~~~~~~~~Dl~d-~~~~~~~~~~~~~D~vi   94 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLK-DHPNLTFVEGSIAD-HALVNQLIGDLQPDAVV   94 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSC-CCTTEEEEECCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHh-hcCCceEEEEeCCC-HHHHHHHHhccCCcEEE
Confidence            34568999999999999999999999999999999998654322222 11578999999999 8888888764 599999


Q ss_pred             EcCCCCCCC---CCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeec----cCCCCCCCcchhccchh-hHHHHHHH
Q 025456          141 CATGFQPGW---DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG----AAMGQILNPAYIFLNVF-GLTLIAKL  212 (252)
Q Consensus       141 ~~ag~~~~~---~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~----~~~~~~~~~~~~~~~~~-~~y~~sK~  212 (252)
                      ||||.....   +++  +++|+.++.+++++|++.++++||++||..+|+    .... +.++..   .+. ..|+.+|.
T Consensus        95 h~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~---~p~~~~Y~~sK~  168 (333)
T 2q1w_A           95 HTAASYKDPDDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR---NPANSSYAISKS  168 (333)
T ss_dssp             ECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC---CCTTCHHHHHHH
T ss_pred             ECceecCCCccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC---CCCCCchHHHHH
Confidence            999975431   222  789999999999999999999999999999997    4332 333332   445 78999999


Q ss_pred             HHHHHHHH-cCCcEEEEeCCcccCCC
Q 025456          213 QAEQYIRK-SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       213 ~~e~~~~~-~gi~~~~lrPg~i~~~~  237 (252)
                      ++|++++. .. +++++||++++|+.
T Consensus       169 ~~E~~~~~s~~-~~~ilR~~~v~gp~  193 (333)
T 2q1w_A          169 ANEDYLEYSGL-DFVTFRLANVVGPR  193 (333)
T ss_dssp             HHHHHHHHHTC-CEEEEEESEEESTT
T ss_pred             HHHHHHHhhhC-CeEEEeeceEECcC
Confidence            99999988 66 99999999999987

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.95  E-value=3.3e-27  Score=203.36  Aligned_cols=169  Identities=17%  Similarity=0.254  Sum_probs=137.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      |+|+||||+||||++++++|+++ |++|++++|+.+......  ...+++++.+|++|..+.+.+++.+ +|+||||||.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~-~d~vih~A~~   77 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL--NHPHFHFVEGDISIHSEWIEYHVKK-CDVVLPLVAI   77 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT--TCTTEEEEECCTTTCSHHHHHHHHH-CSEEEECBCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh--cCCCeEEEeccccCcHHHHHhhccC-CCEEEEcccc
Confidence            58999999999999999999998 899999999887654433  2357999999999834568888888 9999999997


Q ss_pred             CCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchh------ccchhhHHHHHHHHHH
Q 025456          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI------FLNVFGLTLIAKLQAE  215 (252)
Q Consensus       146 ~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~------~~~~~~~y~~sK~~~e  215 (252)
                      ...    .++...+++|+.++.+++++|++.+ ++|||+||..+|+...+.+..+...      ...+...|+.+|.++|
T Consensus        78 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e  156 (345)
T 2bll_A           78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD  156 (345)
T ss_dssp             CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred             cCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHHH
Confidence            542    2455677899999999999999988 8999999999998765444433321      1135568999999999


Q ss_pred             HHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          216 QYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       216 ~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ++++    +.|++++++||++++|+...
T Consensus       157 ~~~~~~~~~~~~~~~ilrp~~v~G~~~~  184 (345)
T 2bll_A          157 RVIWAYGEKEGLQFTLFRPFNWMGPRLD  184 (345)
T ss_dssp             HHHHHHHHHHCCCEEEEEECSEECSSCC
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCCcc
Confidence            8875    45999999999999998753

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.95  E-value=1.5e-27  Score=205.03  Aligned_cols=175  Identities=19%  Similarity=0.136  Sum_probs=137.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEE-EeeCCCChHHHHHHHcCCCc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIV-KADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i-~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      .+++++|+||||+||||++++++|+++|++|++++|+.+........    ...+++++ .+|++| .+++.+++.+ +|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~-~d   85 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK-QGAYDEVIKG-AA   85 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS-TTTTTTTTTT-CS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC-hHHHHHHHcC-CC
Confidence            34689999999999999999999999999999999987654322110    12578888 799999 7888888888 99


Q ss_pred             EEEEcCCCCCC-CCCCCcceehHHHHHHHHHHHHh-cCCCEEEEEccceeeccCCC----CCCCcch-------------
Q 025456          138 AVVCATGFQPG-WDLFAPWKVDNFGTVNLVEACRK-RGVNRFILISSILVNGAAMG----QILNPAY-------------  198 (252)
Q Consensus       138 ~vi~~ag~~~~-~~~~~~~~~n~~g~~~ll~~~~~-~~~~~~v~~SS~~v~~~~~~----~~~~~~~-------------  198 (252)
                      +||||||.... .++...+++|+.++.+++++|++ .++++||++||..+|+....    .+.++..             
T Consensus        86 ~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  165 (342)
T 1y1p_A           86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLP  165 (342)
T ss_dssp             EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSC
T ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcccc
Confidence            99999987542 35556789999999999999984 67889999999988754321    2222221             


Q ss_pred             --hccchhhHHHHHHHHHHHHHHHc------CCcEEEEeCCcccCCCCC
Q 025456          199 --IFLNVFGLTLIAKLQAEQYIRKS------GINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       199 --~~~~~~~~y~~sK~~~e~~~~~~------gi~~~~lrPg~i~~~~~~  239 (252)
                        .+..+...|+.+|.++|.+++..      +++++++||++++|+...
T Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~  214 (342)
T 1y1p_A          166 ESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFD  214 (342)
T ss_dssp             TTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSC
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCC
Confidence              12356788999999999887532      799999999999998653

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.95  E-value=4.7e-28  Score=198.97  Aligned_cols=156  Identities=21%  Similarity=0.269  Sum_probs=132.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      +++|+|+||||+||||++++++|+++|+  +|++++|+++......   ..++.++.+|++| .+++.+++.+ +|+|||
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~---~~~~~~~~~D~~d-~~~~~~~~~~-~d~vi~   90 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA---YKNVNQEVVDFEK-LDDYASAFQG-HDVGFC   90 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG---GGGCEEEECCGGG-GGGGGGGGSS-CSEEEE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc---cCCceEEecCcCC-HHHHHHHhcC-CCEEEE
Confidence            4578999999999999999999999999  9999999876543221   1368899999999 8889999998 999999


Q ss_pred             cCCCCCC-CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH
Q 025456          142 ATGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       142 ~ag~~~~-~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      |||.... .+++..+++|+.++.++++++++.++++||++||.++|+.              +...|+.+|.++|++++.
T Consensus        91 ~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~--------------~~~~Y~~sK~~~e~~~~~  156 (242)
T 2bka_A           91 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS--------------SNFLYLQVKGEVEAKVEE  156 (242)
T ss_dssp             CCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------CSSHHHHHHHHHHHHHHT
T ss_pred             CCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC--------------CcchHHHHHHHHHHHHHh
Confidence            9996531 2344667899999999999999999899999999977642              125689999999999999


Q ss_pred             cCC-cEEEEeCCcccCCCC
Q 025456          221 SGI-NYTIIRPGGLRNEPP  238 (252)
Q Consensus       221 ~gi-~~~~lrPg~i~~~~~  238 (252)
                      .++ ++++||||.++|+..
T Consensus       157 ~~~~~~~~vrpg~v~~~~~  175 (242)
T 2bka_A          157 LKFDRYSVFRPGVLLCDRQ  175 (242)
T ss_dssp             TCCSEEEEEECCEEECTTG
T ss_pred             cCCCCeEEEcCceecCCCC
Confidence            899 599999999999853

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.95  E-value=2.2e-27  Score=204.93  Aligned_cols=170  Identities=20%  Similarity=0.210  Sum_probs=136.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh----------hhhccccCCCCeEEEEeeCCCChHHHHHHHc--
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----------AKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--  133 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~----------~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--  133 (252)
                      +|+|+||||+||||++++++|+++|++|++++|....          .+.+......+++++.+|++| .+++.+++.  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILD-QGALQRLFKKY   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCC-HHHHHHHHHhc
Confidence            5899999999999999999999999999999885432          111110013468999999999 888988887  


Q ss_pred             CCCcEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccch-hhHHH
Q 025456          134 DDSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTL  208 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~-~~~y~  208 (252)
                      + +|+||||||....    .++...+++|+.++.+++++|++.++++||++||..+|+.....+.++.. +..+ ...|+
T Consensus        81 ~-~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~-~~~p~~~~Y~  158 (348)
T 1ek6_A           81 S-FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-PTGGCTNPYG  158 (348)
T ss_dssp             C-EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS-CCCCCSSHHH
T ss_pred             C-CCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCC-CCCCCCCchH
Confidence            6 9999999997541    34556789999999999999999999999999999999865544544433 2334 67899


Q ss_pred             HHHHHHHHHHHH---cC--CcEEEEeCCcccCCCC
Q 025456          209 IAKLQAEQYIRK---SG--INYTIIRPGGLRNEPP  238 (252)
Q Consensus       209 ~sK~~~e~~~~~---~g--i~~~~lrPg~i~~~~~  238 (252)
                      .+|.++|++++.   .+  ++++++||++++|+..
T Consensus       159 ~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~  193 (348)
T 1ek6_A          159 KSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHA  193 (348)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred             HHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCc
Confidence            999999988764   24  9999999999999853

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.95  E-value=1e-26  Score=188.69  Aligned_cols=164  Identities=23%  Similarity=0.162  Sum_probs=128.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|+|||||||||++++++|+++|++|++++|++++.....   ..+++++.+|++| .++  +.+.+ +|+||||||..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~~~~~~~~~D~~d-~~~--~~~~~-~d~vi~~ag~~   73 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL---GATVATLVKEPLV-LTE--ADLDS-VDAVVDALSVP   73 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT---CTTSEEEECCGGG-CCH--HHHTT-CSEEEECCCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc---CCCceEEeccccc-ccH--hhccc-CCEEEECCccC
Confidence            47999999999999999999999999999999987766543   2579999999999 555  78888 99999999976


Q ss_pred             CCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCC---CCCcchhccchhhHHHHHHHHHHHH--H-HH
Q 025456          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ---ILNPAYIFLNVFGLTLIAKLQAEQY--I-RK  220 (252)
Q Consensus       147 ~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~---~~~~~~~~~~~~~~y~~sK~~~e~~--~-~~  220 (252)
                      ..   ....++|+.++.+++++|++.+ ++||++||.+++....+.   +.++. ....+...|+.+|..+|.+  + ++
T Consensus        74 ~~---~~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~sK~~~e~~~~~~~~  148 (224)
T 3h2s_A           74 WG---SGRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFP-ESAASQPWYDGALYQYYEYQFLQMN  148 (224)
T ss_dssp             TT---SSCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCC-GGGGGSTTHHHHHHHHHHHHHHTTC
T ss_pred             CC---cchhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCC-CCCccchhhHHHHHHHHHHHHHHhc
Confidence            32   1345789999999999999999 899999998654332221   11111 2233467899999999864  2 35


Q ss_pred             cCCcEEEEeCCcccCCCCCCce
Q 025456          221 SGINYTIIRPGGLRNEPPTGNI  242 (252)
Q Consensus       221 ~gi~~~~lrPg~i~~~~~~~~~  242 (252)
                      .+++++++||++++|+.....+
T Consensus       149 ~~i~~~ivrp~~v~g~~~~~~~  170 (224)
T 3h2s_A          149 ANVNWIGISPSEAFPSGPATSY  170 (224)
T ss_dssp             TTSCEEEEEECSBCCCCCCCCE
T ss_pred             CCCcEEEEcCccccCCCcccCc
Confidence            6999999999999998543333

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.95  E-value=2.1e-26  Score=186.86  Aligned_cols=162  Identities=19%  Similarity=0.270  Sum_probs=129.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHH-HCCCeEEEeecCch-hhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLL-AKGFAVKAGVRDLD-KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~-~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++|+|+||||+|+||++++++|+ ++|++|++++|+++ +.+++.. ...+++++.+|++| .+++.+++.+ +|+||||
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~d-~~~~~~~~~~-~d~vv~~   80 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII-DHERVTVIEGSFQN-PGXLEQAVTN-AEVVFVG   80 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH-TSTTEEEEECCTTC-HHHHHHHHTT-CSEEEES
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc-CCCceEEEECCCCC-HHHHHHHHcC-CCEEEEc
Confidence            35779999999999999999999 89999999999987 6544321 23679999999999 8999999998 9999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhh-HHHHHHHHHHHHHHHc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG-LTLIAKLQAEQYIRKS  221 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~-~y~~sK~~~e~~~~~~  221 (252)
                      +|..           |+. +.+++++|++.++++||++||..+|+...... .+ + ...... .|..+|..+|+++++.
T Consensus        81 ag~~-----------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~-~~-~-~~~~~~~~y~~~K~~~e~~~~~~  145 (221)
T 3r6d_A           81 AMES-----------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVAL-EK-W-TFDNLPISYVQGERQARNVLRES  145 (221)
T ss_dssp             CCCC-----------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHH-HH-H-HHHTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCC-----------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCccc-cc-c-cccccccHHHHHHHHHHHHHHhC
Confidence            9853           555 99999999999999999999998775322100 00 0 001122 7999999999999999


Q ss_pred             CCcEEEEeCCcccCCCCCCceEe
Q 025456          222 GINYTIIRPGGLRNEPPTGNIIM  244 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~~~~~~~~  244 (252)
                      ++++++||||+++++...+.+..
T Consensus       146 ~i~~~~vrpg~v~~~~~~~~~~~  168 (221)
T 3r6d_A          146 NLNYTILRLTWLYNDPEXTDYEL  168 (221)
T ss_dssp             CSEEEEEEECEEECCTTCCCCEE
T ss_pred             CCCEEEEechhhcCCCCCcceee
Confidence            99999999999999854444443

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.95  E-value=4.8e-27  Score=202.75  Aligned_cols=170  Identities=19%  Similarity=0.154  Sum_probs=136.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCchhh-hhcccc-CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKA-KTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~-~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ||+|+||||+||||++++++|+++  |++|++++|+.... ...+.. ...+++++.+|++| .+++.+++.+ +|+|||
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~vih   81 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD-AELVDKLAAK-ADAIVH   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTC-HHHHHHHHTT-CSEEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCC-HHHHHHHhhc-CCEEEE
Confidence            589999999999999999999998  89999999975321 111111 23579999999999 8999999999 999999


Q ss_pred             cCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCC------------CCCCcchhccchhh
Q 025456          142 ATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG------------QILNPAYIFLNVFG  205 (252)
Q Consensus       142 ~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~------------~~~~~~~~~~~~~~  205 (252)
                      |||...    ..++...+++|+.++.+++++|++.++ +|||+||..+|+....            .+..+. .+..+..
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~-~~~~~~~  159 (348)
T 1oc2_A           82 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE-TNYNPSS  159 (348)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT-SCCCCCS
T ss_pred             CCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCC-CCCCCCC
Confidence            999754    135667789999999999999999887 9999999999975421            223332 2345567


Q ss_pred             HHHHHHHHHHHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          206 LTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       206 ~y~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      .|+.+|.++|++++.    .|++++++||++++|+...
T Consensus       160 ~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~  197 (348)
T 1oc2_A          160 PYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQH  197 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCC
Confidence            899999999988754    5999999999999998753

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.95  E-value=4.7e-27  Score=201.80  Aligned_cols=172  Identities=18%  Similarity=0.139  Sum_probs=138.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh----hccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK----TTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~v  139 (252)
                      .+++||||||+||||++++++|+++|++|++++|+.+...    ..+. ...+++++.+|++| .+++.+++.+ ++|+|
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~V   90 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMAD-ACSVQRAVIKAQPQEV   90 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTC-HHHHHHHHHHHCCSEE
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc-ccCceEEEECCCCC-HHHHHHHHHHcCCCEE
Confidence            4799999999999999999999999999999999865421    1110 12468999999999 8888888875 47999


Q ss_pred             EEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHH
Q 025456          140 VCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       140 i~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (252)
                      |||||...    ..++...+++|+.++.+++++|++.++ ++||++||.++|+...+.+.++. .+.++...|+.+|.++
T Consensus        91 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~-~~~~p~~~Y~~sK~~~  169 (335)
T 1rpn_A           91 YNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-TPFYPRSPYGVAKLYG  169 (335)
T ss_dssp             EECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-SCCCCCSHHHHHHHHH
T ss_pred             EECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcc-cCCCCCChhHHHHHHH
Confidence            99999754    235556789999999999999999886 89999999999987654444443 2345667899999999


Q ss_pred             HHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          215 EQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       215 e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      |.+++.    .+++++++||++++|+...
T Consensus       170 e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~  198 (335)
T 1rpn_A          170 HWITVNYRESFGLHASSGILFNHESPLRG  198 (335)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHcCCcEEEEeeCcccCCCCC
Confidence            988764    4999999999999998643

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.95  E-value=1.4e-26  Score=190.82  Aligned_cols=161  Identities=29%  Similarity=0.404  Sum_probs=131.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      +++++|+||||+||||++++++|+++  |++|++++|++++.+..    ..+++++.+|++| .+++.+++.+ +|+|||
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~D~~d-~~~~~~~~~~-~d~vi~   75 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI----GGEADVFIGDITD-ADSINPAFQG-IDALVI   75 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT----TCCTTEEECCTTS-HHHHHHHHTT-CSEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc----CCCeeEEEecCCC-HHHHHHHHcC-CCEEEE
Confidence            35799999999999999999999999  89999999987765443    3467899999999 8999999998 999999


Q ss_pred             cCCCCCC-----------------CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          142 ATGFQPG-----------------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       142 ~ag~~~~-----------------~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |||....                 .++...+++|+.++.++++++++.++++||++||..++...         .+..++
T Consensus        76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~~---------~~~~~~  146 (253)
T 1xq6_A           76 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPD---------HPLNKL  146 (253)
T ss_dssp             CCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTT---------CGGGGG
T ss_pred             eccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCCC---------Cccccc
Confidence            9986431                 11123468999999999999999999999999998654211         111222


Q ss_pred             --hHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCC
Q 025456          205 --GLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       205 --~~y~~sK~~~e~~~~~~gi~~~~lrPg~i~~~~~~  239 (252)
                        ..|..+|.++|.++++.|++++++|||.++++...
T Consensus       147 ~~~~y~~sK~~~e~~~~~~~i~~~~vrpg~v~~~~~~  183 (253)
T 1xq6_A          147 GNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGG  183 (253)
T ss_dssp             GGCCHHHHHHHHHHHHHTSSSCEEEEEECEEECSCSS
T ss_pred             cchhHHHHHHHHHHHHHhCCCceEEEecceeecCCcc
Confidence              35888999999999999999999999999998643

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.95  E-value=3.4e-27  Score=203.36  Aligned_cols=171  Identities=19%  Similarity=0.205  Sum_probs=134.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhh---hccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAK---TTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      ||+|+||||+||||++|+++|+++|++|++++|.. ....   ..+. ...+++++.+|++| .+++.+++.+ ++|+||
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~-~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~vi   78 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-SLGNFEFVHGDIRN-KNDVTRLITKYMPDSCF   78 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-TTCCCEEEECCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhc-cCCceEEEEcCCCC-HHHHHHHHhccCCCEEE
Confidence            47899999999999999999999999999998853 1111   1111 22468999999999 8888888764 599999


Q ss_pred             EcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEccceeeccCCCCC----------------CCcchh
Q 025456          141 CATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQI----------------LNPAYI  199 (252)
Q Consensus       141 ~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~SS~~v~~~~~~~~----------------~~~~~~  199 (252)
                      ||||....    .++...+++|+.++.+++++|++.+++ +||++||.++|+.....+                ..+ ..
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e-~~  157 (347)
T 1orr_A           79 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDE-ST  157 (347)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCT-TS
T ss_pred             ECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccc-cC
Confidence            99997542    255667899999999999999998885 999999999998643322                111 12


Q ss_pred             ccchhhHHHHHHHHHHHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      +..+...|+.+|.++|++++.    .|++++++||++++|+...
T Consensus       158 ~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~  201 (347)
T 1orr_A          158 QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQF  201 (347)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCC
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCC
Confidence            345678899999999988764    4999999999999998753

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.95  E-value=8e-27  Score=200.72  Aligned_cols=173  Identities=24%  Similarity=0.259  Sum_probs=129.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh---hc--cccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---TT--LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~--~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ++++||||||+||||++++++|+++|++|++++|+.+...   ..  +.....+++++.+|++| .+++.+++.+ +|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLAD-EGSFDEAIKG-CTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTS-TTTTHHHHTT-CSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCC-HHHHHHHHcC-CCEE
Confidence            4789999999999999999999999999999999875321   11  11001358899999999 7889999998 9999


Q ss_pred             EEcCCCCCCC--CC-CCcceehHHHHHHHHHHHHhcC-CCEEEEEcccee-eccCC-CCCCCcchh-c-------cchhh
Q 025456          140 VCATGFQPGW--DL-FAPWKVDNFGTVNLVEACRKRG-VNRFILISSILV-NGAAM-GQILNPAYI-F-------LNVFG  205 (252)
Q Consensus       140 i~~ag~~~~~--~~-~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v-~~~~~-~~~~~~~~~-~-------~~~~~  205 (252)
                      ||+|+.....  ++ ...+++|+.|+.+++++|++.+ +++|||+||..+ |+... ..+.++... +       ..+..
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  161 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAW  161 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTH
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCccc
Confidence            9999865321  11 1367899999999999999887 899999999874 44321 111222210 0       11345


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       206 ~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .|+.+|.++|.++.    ++|++++++||++++|+...
T Consensus       162 ~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~  199 (337)
T 2c29_D          162 MYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIM  199 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSC
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCC
Confidence            79999999998763    46999999999999999754

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.95  E-value=6.2e-27  Score=205.62  Aligned_cols=171  Identities=19%  Similarity=0.156  Sum_probs=136.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHH-HCCCeEEEeecCchhh---------hhc------cccC--CCC---eEEEEeeCCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLL-AKGFAVKAGVRDLDKA---------KTT------LSKD--NPS---LQIVKADVTEG  124 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~-~~G~~V~~~~r~~~~~---------~~~------~~~~--~~~---~~~i~~Dl~d~  124 (252)
                      +|+|+||||+||||++|+++|+ ++|++|++++|+....         ...      +...  ..+   ++++.+|++| 
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-   80 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN-   80 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC-
Confidence            4699999999999999999999 9999999999875432         111      0000  124   8999999999 


Q ss_pred             hHHHHHHHc--CCCcEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCC-------C
Q 025456          125 SAKLSEAIG--DDSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-------G  191 (252)
Q Consensus       125 ~~~~~~~~~--~~~d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~-------~  191 (252)
                      .+++.+++.  +++|+||||||....    .++...+++|+.++.+++++|++.++++||++||.++|+...       .
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~  160 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccc
Confidence            888888886  339999999997542    345567899999999999999999999999999999997654       2


Q ss_pred             CCCCcchhccchhhHHHHHHHHHHHHHHH----cCCcEEEEeCCcccCCCC
Q 025456          192 QILNPAYIFLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~  238 (252)
                      .+.++.. +.++...|+.+|.++|.+++.    .+++++++||++++|+..
T Consensus       161 ~~~~E~~-~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~  210 (397)
T 1gy8_A          161 EPIDINA-KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHE  210 (397)
T ss_dssp             CCBCTTS-CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCT
T ss_pred             cCcCccC-CCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCc
Confidence            3444432 345678899999999988764    599999999999999864

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.95  E-value=9.4e-27  Score=200.19  Aligned_cols=170  Identities=19%  Similarity=0.181  Sum_probs=137.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC---C---CeEEEeecCchhh-hhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK---G---FAVKAGVRDLDKA-KTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~---G---~~V~~~~r~~~~~-~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      |+|+||||+||||++++++|+++   |   ++|++++|..... ...+..  ...+++++.+|++| .+++.+++.+ +|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d   78 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRD-AGLLARELRG-VD   78 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTC-HHHHHHHTTT-CC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCC-HHHHHHHhcC-CC
Confidence            47999999999999999999997   8   9999999865211 111111  23579999999999 8899999988 99


Q ss_pred             EEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHH
Q 025456          138 AVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ  213 (252)
Q Consensus       138 ~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~  213 (252)
                      +||||||....    .++...+++|+.++.+++++|++.++++|||+||..+|+.....+..+. .+..+...|+.+|.+
T Consensus        79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-~~~~~~~~Y~~sK~~  157 (337)
T 1r6d_A           79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-SPLEPNSPYAASKAG  157 (337)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-SCCCCCSHHHHHHHH
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCC-CCCCCCCchHHHHHH
Confidence            99999997542    3566778999999999999999999999999999999986543344333 234566789999999


Q ss_pred             HHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          214 AEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       214 ~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      +|++++    +.+++++++||++++|+...
T Consensus       158 ~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~  187 (337)
T 1r6d_A          158 SDLVARAYHRTYGLDVRITRCCNNYGPYQH  187 (337)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECEEECTTCC
T ss_pred             HHHHHHHHHHHHCCCEEEEEeeeeECCCCC
Confidence            998875    35999999999999998753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.95  E-value=4.6e-27  Score=190.15  Aligned_cols=158  Identities=22%  Similarity=0.241  Sum_probs=119.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|+|||||||||++++++|+++|++|++++|++++.....    .+++++.+|++| .++  +.+.+ +|+||||||..
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~----~~~~~~~~D~~d-~~~--~~~~~-~d~vi~~ag~~   72 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH----KDINILQKDIFD-LTL--SDLSD-QNVVVDAYGIS   72 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC----SSSEEEECCGGG-CCH--HHHTT-CSEEEECCCSS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc----CCCeEEeccccC-hhh--hhhcC-CCEEEECCcCC
Confidence            47999999999999999999999999999999987765432    578999999999 555  78888 99999999974


Q ss_pred             CCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHH--HH--HcC
Q 025456          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY--IR--KSG  222 (252)
Q Consensus       147 ~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~--~~--~~g  222 (252)
                      .     ...++|+.++.+++++|++.+++++|++||.+++....+........+..+...|+.+|...|.+  ++  +.+
T Consensus        73 ~-----~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~g  147 (221)
T 3ew7_A           73 P-----DEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAE  147 (221)
T ss_dssp             T-----TTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC-------------------CCCSCCHHHHHHHHHHHHTTTTT
T ss_pred             c-----cccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHhhccC
Confidence            3     23567999999999999999889999999987654332211111112233445577888888865  55  679


Q ss_pred             CcEEEEeCCcccCCC
Q 025456          223 INYTIIRPGGLRNEP  237 (252)
Q Consensus       223 i~~~~lrPg~i~~~~  237 (252)
                      ++++++||++++|+.
T Consensus       148 i~~~ivrp~~v~g~~  162 (221)
T 3ew7_A          148 FSWTYISPSAMFEPG  162 (221)
T ss_dssp             SCEEEEECSSCCCCC
T ss_pred             ccEEEEeCcceecCC
Confidence            999999999999973

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.94  E-value=5e-27  Score=203.15  Aligned_cols=159  Identities=21%  Similarity=0.342  Sum_probs=133.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHC-CC-eEEEeecCchhhhhcccc-CCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAK-GF-AVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~-G~-~V~~~~r~~~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      ..+++|+|+||||+|+||++++++|+++ |+ +|++++|++.+....... ...++.++.+|++| .+++.+++.+ +|+
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~-~D~   94 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD-LERLNYALEG-VDI   94 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC-HHHHHHHTTT-CSE
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC-HHHHHHHHhc-CCE
Confidence            3467899999999999999999999999 97 999999987665432211 23579999999999 8999999998 999


Q ss_pred             EEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHH
Q 025456          139 VVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       139 vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (252)
                      |||+||...    ..++.+.+++|+.|+.+++++|++.++++||++||..++               ++...|+.+|+++
T Consensus        95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~---------------~p~~~Y~~sK~~~  159 (344)
T 2gn4_A           95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA---------------NPINLYGATKLCS  159 (344)
T ss_dssp             EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS---------------SCCSHHHHHHHHH
T ss_pred             EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC---------------CCccHHHHHHHHH
Confidence            999999754    234556789999999999999999999999999996432               2346799999999


Q ss_pred             HHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          215 EQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       215 e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      |.+++.       .|++++++|||+++|+.
T Consensus       160 E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~  189 (344)
T 2gn4_A          160 DKLFVSANNFKGSSQTQFSVVRYGNVVGSR  189 (344)
T ss_dssp             HHHHHHGGGCCCSSCCEEEEECCCEETTCT
T ss_pred             HHHHHHHHHHhCCCCcEEEEEEeccEECCC
Confidence            998864       47999999999999975

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.94  E-value=7.6e-28  Score=204.67  Aligned_cols=165  Identities=16%  Similarity=0.196  Sum_probs=134.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--CCCcEEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVC  141 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~vi~  141 (252)
                      +|+|+||||+||||++++++|+++  |++|++++|+..... ..    .+++++.+|++| .+++.+++.  + +|+|||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~----~~~~~~~~D~~d-~~~~~~~~~~~~-~d~vih   74 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-VV----NSGPFEVVNALD-FNQIEHLVEVHK-ITDIYL   74 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-HH----HSSCEEECCTTC-HHHHHHHHHHTT-CCEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-cc----CCCceEEecCCC-HHHHHHHHhhcC-CCEEEE
Confidence            578999999999999999999998  899999999865422 11    257789999999 888999887  6 999999


Q ss_pred             cCCCCCC---CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHH
Q 025456          142 ATGFQPG---WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (252)
Q Consensus       142 ~ag~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (252)
                      +||....   .++...+++|+.++.+++++|++.++++|||+||..+|+........++..+.++...|+.+|.++|+++
T Consensus        75 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~  154 (312)
T 2yy7_A           75 MAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWC  154 (312)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHHHHHHHH
T ss_pred             CCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHHHHHHHH
Confidence            9986532   3455678999999999999999999999999999999986433222222334566788999999999877


Q ss_pred             HH----cCCcEEEEeCCcccCCC
Q 025456          219 RK----SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       219 ~~----~gi~~~~lrPg~i~~~~  237 (252)
                      +.    .|++++++||++++|+.
T Consensus       155 ~~~~~~~~~~~~~lrp~~v~g~~  177 (312)
T 2yy7_A          155 EYYHNIYGVDVRSIRYPGLISWS  177 (312)
T ss_dssp             HHHHHHHCCEEECEEECEEECSS
T ss_pred             HHHHHhcCCcEEEEeCCeEecCC
Confidence            53    58999999999999964

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.94  E-value=3.7e-27  Score=200.67  Aligned_cols=167  Identities=21%  Similarity=0.334  Sum_probs=134.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--CCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~vi~~ag  144 (252)
                      |+|+||||+||||++++++|+++|++|++++|........+   ..+++++.+|++| .+++.+++.  + +|+|||+|+
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~Dl~~-~~~~~~~~~~~~-~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV---PKGVPFFRVDLRD-KEGVERAFREFR-PTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGS---CTTCCEECCCTTC-HHHHHHHHHHHC-CSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhc---ccCeEEEECCCCC-HHHHHHHHHhcC-CCEEEECcc
Confidence            47999999999999999999999999999988543222212   1467889999999 888888887  6 999999998


Q ss_pred             CCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc-eeecc-CCCCCCCcchhccchhhHHHHHHHHHHHHH
Q 025456          145 FQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI-LVNGA-AMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (252)
Q Consensus       145 ~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~-~v~~~-~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (252)
                      ....    .++...+++|+.|+.+++++|++.++++||++||. .+|+. ....+..+.. +..+...|+.+|.++|+++
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~-~~~~~~~Y~~sK~~~e~~~  154 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETW-PPRPKSPYAASKAAFEHYL  154 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTS-CCCCCSHHHHHHHHHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCC-CCCCCChHHHHHHHHHHHH
Confidence            6541    34556789999999999999999999999999998 88875 3333333332 3445678999999999887


Q ss_pred             H----HcCCcEEEEeCCcccCCCCC
Q 025456          219 R----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       219 ~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      +    +.|++++++||++++|+...
T Consensus       155 ~~~~~~~~~~~~~lrp~~v~Gp~~~  179 (311)
T 2p5y_A          155 SVYGQSYGLKWVSLRYGNVYGPRQD  179 (311)
T ss_dssp             HHHHHHHCCCEEEEEECEEECTTCC
T ss_pred             HHHHHHcCCCEEEEeeccccCcCCC
Confidence            5    36899999999999998653

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.94  E-value=1.4e-26  Score=197.79  Aligned_cols=156  Identities=17%  Similarity=0.172  Sum_probs=130.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--CCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~vi~~  142 (252)
                      ++|+|+||||+||||++|+++|+++|++|+++.|+.                 .+|++| .+++.+++.  + +|+|||+
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-----------------~~D~~d-~~~~~~~~~~~~-~d~vih~   62 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------ELNLLD-SRAVHDFFASER-IDQVYLA   62 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------TCCTTC-HHHHHHHHHHHC-CSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-----------------cCCccC-HHHHHHHHHhcC-CCEEEEc
Confidence            468999999999999999999999999999887752                 269999 888999888  7 9999999


Q ss_pred             CCCCCC-----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchh---ccch-hhHHHHHHHH
Q 025456          143 TGFQPG-----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI---FLNV-FGLTLIAKLQ  213 (252)
Q Consensus       143 ag~~~~-----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~---~~~~-~~~y~~sK~~  213 (252)
                      |+....     .++...+++|+.++.+++++|++.++++|||+||..+|+.....+..+...   +..+ ...|+.+|.+
T Consensus        63 a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~  142 (321)
T 1e6u_A           63 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIA  142 (321)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHH
T ss_pred             CeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHHHHHH
Confidence            997541     245567889999999999999999999999999999998765555555431   3344 3689999999


Q ss_pred             HHHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          214 AEQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       214 ~e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      +|++++.    .+++++++||++++|+...
T Consensus       143 ~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~  172 (321)
T 1e6u_A          143 GIKLCESYNRQYGRDYRSVMPTNLYGPHDN  172 (321)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCcCCcCCC
Confidence            9988764    5999999999999998754

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.94  E-value=1.4e-26  Score=203.79  Aligned_cols=173  Identities=16%  Similarity=0.150  Sum_probs=132.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh--------------------hccccCCCCeEEEEeeCCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--------------------TTLSKDNPSLQIVKADVTE  123 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~--------------------~~~~~~~~~~~~i~~Dl~d  123 (252)
                      .++++||||||+||||++|+++|+++|++|++++|......                    ........+++++.+|++|
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d   88 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD   88 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence            35899999999999999999999999999999988643211                    0000013578999999999


Q ss_pred             ChHHHHHHHcC-CCcEEEEcCCCCCC----CCC---CCcceehHHHHHHHHHHHHhcCC-CEEEEEccceeeccCCCCCC
Q 025456          124 GSAKLSEAIGD-DSEAVVCATGFQPG----WDL---FAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQIL  194 (252)
Q Consensus       124 ~~~~~~~~~~~-~~d~vi~~ag~~~~----~~~---~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~SS~~v~~~~~~~~~  194 (252)
                       .+++.+++.+ ++|+||||||....    .++   ...+++|+.|+.+++++|++.++ ++||++||.++|+.... +.
T Consensus        89 -~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~-~~  166 (404)
T 1i24_A           89 -FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DI  166 (404)
T ss_dssp             -HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CB
T ss_pred             -HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCCC-CC
Confidence             8888888765 59999999997541    122   13568999999999999999887 59999999999986532 22


Q ss_pred             Ccch-------------hccchhhHHHHHHHHHHHHHHH----cCCcEEEEeCCcccCCCC
Q 025456          195 NPAY-------------IFLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       195 ~~~~-------------~~~~~~~~y~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..             .+..+...|+.+|.++|++++.    .|++++++||++++|+..
T Consensus       167 ~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~  227 (404)
T 1i24_A          167 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  227 (404)
T ss_dssp             CSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             CccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCC
Confidence            2210             2345567899999999987653    499999999999999865

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.94  E-value=1.6e-26  Score=198.90  Aligned_cols=170  Identities=19%  Similarity=0.215  Sum_probs=131.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh---hcccc-CCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---TTLSK-DNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~  141 (252)
                      |+|+||||+||||++++++|+++|++|++++|......   ..+.. ...++.++.+|++| .+++.+++.+ ++|+|||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~D~vih   79 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-EALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC-HHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCC-HHHHHHHhhccCCCEEEE
Confidence            47999999999999999999999999999886432111   11110 12468899999999 8888888763 3999999


Q ss_pred             cCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHH
Q 025456          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (252)
Q Consensus       142 ~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (252)
                      |||....    .++...+++|+.++.+++++|++.++++||++||..+|+.....+..+......+...|+.+|.++|++
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~  159 (338)
T 1udb_A           80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQI  159 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHHH
T ss_pred             CCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHHHH
Confidence            9996531    234456889999999999999998989999999999998654444444332212257899999999988


Q ss_pred             HHH----c-CCcEEEEeCCcccCCC
Q 025456          218 IRK----S-GINYTIIRPGGLRNEP  237 (252)
Q Consensus       218 ~~~----~-gi~~~~lrPg~i~~~~  237 (252)
                      ++.    . +++++++||++++|+.
T Consensus       160 ~~~~~~~~~~~~~~ilR~~~v~G~~  184 (338)
T 1udb_A          160 LTDLQKAQPDWSIALLRYFNPVGAH  184 (338)
T ss_dssp             HHHHHHHSTTCEEEEEEECEEECCC
T ss_pred             HHHHHHhcCCCceEEEeeceecCCC
Confidence            754    3 7999999999999874

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.94  E-value=2.2e-26  Score=197.99  Aligned_cols=173  Identities=16%  Similarity=0.118  Sum_probs=138.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh-cccc--CCCCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-TLSK--DNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      ++|+|+||||+||||++++++|+++|++|++++|+.+.... .+..  ...+++++.+|++| .+++.+++.+ ++|+||
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLE-FSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCC-HHHHHHHHHhcCCCEEE
Confidence            47899999999999999999999999999999998754321 1110  12478999999999 8888888875 379999


Q ss_pred             EcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHH
Q 025456          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (252)
Q Consensus       141 ~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (252)
                      ||||...    ..++...+++|+.|+.+++++|++.++ ++||++||..+||...+.+..+. .+..+...|+.+|.++|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-~~~~~~~~Y~~sK~~~e  159 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK-TPFYPRSPYAVAKLFGH  159 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT-SCCCCCSHHHHHHHHHH
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCcc-CCCCCCChhHHHHHHHH
Confidence            9999754    345667789999999999999998887 89999999999987654444433 23456678999999999


Q ss_pred             HHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          216 QYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       216 ~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      .+++.    .+++++++|+.+++++...
T Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~gpg~~  187 (345)
T 2z1m_A          160 WITVNYREAYNMFACSGILFNHESPLRG  187 (345)
T ss_dssp             HHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHhCCceEeeeeeeecCCCCC
Confidence            88753    4899999999999988643

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.94  E-value=1.2e-26  Score=197.65  Aligned_cols=159  Identities=17%  Similarity=0.178  Sum_probs=109.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag  144 (252)
                      +|+|+||||+||||++++++|+++|++|++++|+.+.         .+  ++.+|++| .+++.+++.+ ++|+||||||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~--~~~~Dl~d-~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------PK--FEQVNLLD-SNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------CC--eEEecCCC-HHHHHHHHHhhCCCEEEECCc
Confidence            5899999999999999999999999999999987543         12  77899999 7778887764 4899999998


Q ss_pred             CCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH
Q 025456          145 FQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       145 ~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      ...    ..++...+++|+.++.+++++|++.++ +|||+||..+|+. ...+.++. .+..+...|+.+|.++|++++.
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~-~~~~~~E~-~~~~~~~~Y~~sK~~~e~~~~~  146 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDG-TNPPYREE-DIPAPLNLYGKTKLDGEKAVLE  146 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCS-SSCSBCTT-SCCCCCSHHHHHHHHHHHHHHH
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCC-CCCCCCCC-CCCCCcCHHHHHHHHHHHHHHH
Confidence            654    246677899999999999999999887 9999999999986 23333333 2345567899999999999999


Q ss_pred             cCCcEEEEeCCcccCCCCC
Q 025456          221 SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       221 ~gi~~~~lrPg~i~~~~~~  239 (252)
                      .+++++++||+.++|+...
T Consensus       147 ~~~~~~~lR~~~v~G~~~~  165 (315)
T 2ydy_A          147 NNLGAAVLRIPILYGEVEK  165 (315)
T ss_dssp             HCTTCEEEEECSEECSCSS
T ss_pred             hCCCeEEEeeeeeeCCCCc
Confidence            8999999999999987654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.94  E-value=7.3e-26  Score=191.38  Aligned_cols=177  Identities=15%  Similarity=0.173  Sum_probs=139.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAV  139 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~v  139 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.++.++.......++.++.+|++| .++++++++.  ++|+|
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~iD~l   90 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQD-LSSVRRFADGVSGADVL   90 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTC-HHHHHHHHHTCCCEEEE
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCC-HHHHHHHHHhcCCCCEE
Confidence            34678999999999999999999999999999999999887765544345679999999999 8888888764  48999


Q ss_pred             EEcCCCCC------CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCC-CCCCcchhccchhhHHHHHHH
Q 025456          140 VCATGFQP------GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG-QILNPAYIFLNVFGLTLIAKL  212 (252)
Q Consensus       140 i~~ag~~~------~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~-~~~~~~~~~~~~~~~y~~sK~  212 (252)
                      |||||+..      ..+++..+++|+.|+.++++++.....++||++||...+..... ........+..+...|+.+|+
T Consensus        91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~  170 (291)
T 3rd5_A           91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKL  170 (291)
T ss_dssp             EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHHHHHH
T ss_pred             EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCCcchHHHHHH
Confidence            99999753      34566778999999999999998776679999999876543211 111111233456788999999


Q ss_pred             HHHHHHH-------HcC--CcEEEEeCCcccCCCCC
Q 025456          213 QAEQYIR-------KSG--INYTIIRPGGLRNEPPT  239 (252)
Q Consensus       213 ~~e~~~~-------~~g--i~~~~lrPg~i~~~~~~  239 (252)
                      +.+.+.+       ..|  +++++++||.+.++...
T Consensus       171 a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~  206 (291)
T 3rd5_A          171 ANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQG  206 (291)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC--
T ss_pred             HHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccc
Confidence            9887664       235  99999999999998643

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.94  E-value=3.7e-26  Score=205.89  Aligned_cols=174  Identities=18%  Similarity=0.223  Sum_probs=139.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHC---CCeEEEeecCchhhhh------cccc------------CCCCeEEEEeeC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAK---GFAVKAGVRDLDKAKT------TLSK------------DNPSLQIVKADV  121 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~---G~~V~~~~r~~~~~~~------~~~~------------~~~~~~~i~~Dl  121 (252)
                      ..++|+|+||||+||||++|+++|+++   |++|++++|+.+....      .+..            ...+++++.+|+
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl  149 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK  149 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence            346899999999999999999999998   8999999998654311      1110            125899999999


Q ss_pred             CCC-----hHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCc
Q 025456          122 TEG-----SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       122 ~d~-----~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                      +++     .+.+.+++.+ +|+||||||.....++.+.+++|+.|+.+++++|++.++++|||+||.++|+.....++.+
T Consensus       150 ~~~~~gld~~~~~~~~~~-~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~~~E  228 (478)
T 4dqv_A          150 SEPDLGLDQPMWRRLAET-VDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTE  228 (478)
T ss_dssp             TSGGGGCCHHHHHHHHHH-CCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTTCCS
T ss_pred             CCcccCCCHHHHHHHHcC-CCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCCcCC
Confidence            841     5678888888 9999999998766667788899999999999999999999999999999988654444433


Q ss_pred             chhccch-----------hhHHHHHHHHHHHHHHH----cCCcEEEEeCCcccCCCC
Q 025456          197 AYIFLNV-----------FGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       197 ~~~~~~~-----------~~~y~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~  238 (252)
                      .. +.++           .+.|+.+|+++|++++.    .|++++++|||+|+|+..
T Consensus       229 ~~-~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~  284 (478)
T 4dqv_A          229 DA-DIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTS  284 (478)
T ss_dssp             SS-CHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSS
T ss_pred             cc-cccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCc
Confidence            22 1111           24499999999998864    599999999999999754

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.94  E-value=8.6e-27  Score=196.14  Aligned_cols=151  Identities=15%  Similarity=0.249  Sum_probs=130.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      |+|+||||+||||++++++|+++|++|++++|.                  ++|++| .+.+.+++.. ++|+|||+||.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------~~D~~d-~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK------------------LLDITN-ISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT------------------TSCTTC-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc------------------ccCCCC-HHHHHHHHHhcCCCEEEECCcc
Confidence            399999999999999999999999999999982                  278999 8888888872 39999999997


Q ss_pred             CC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc
Q 025456          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (252)
Q Consensus       146 ~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (252)
                      ..    ..++...+++|+.++.+++++|++.++ +|||+||..+|+...+.+..+.. +.++.+.|+.+|.++|++++..
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~~~~~  144 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEFH-NPAPINIYGASKYAGEQFVKEL  144 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTTS-CCCCCSHHHHHHHHHHHHHHHH
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHh
Confidence            65    245667789999999999999999998 89999999999876655555543 4466789999999999999988


Q ss_pred             CCcEEEEeCCcccCCCC
Q 025456          222 GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~~  238 (252)
                      +.+++++||+.++|+..
T Consensus       145 ~~~~~ilR~~~v~G~~~  161 (287)
T 3sc6_A          145 HNKYFIVRTSWLYGKYG  161 (287)
T ss_dssp             CSSEEEEEECSEECSSS
T ss_pred             CCCcEEEeeeeecCCCC
Confidence            88999999999999864

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.94  E-value=6.4e-26  Score=195.62  Aligned_cols=168  Identities=17%  Similarity=0.229  Sum_probs=131.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .+++++|+||||+||||++|+++|+++|++|++++|+.......+..  ...+++++.+|+.+ .     .+.+ +|+||
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~-----~~~~-~d~vi   96 (343)
T 2b69_A           24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE-P-----LYIE-VDQIY   96 (343)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTS-C-----CCCC-CSEEE
T ss_pred             ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCC-h-----hhcC-CCEEE
Confidence            34679999999999999999999999999999999975432211110  23578999999988 3     2566 99999


Q ss_pred             EcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcch----hccchhhHHHHHHH
Q 025456          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKL  212 (252)
Q Consensus       141 ~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~----~~~~~~~~y~~sK~  212 (252)
                      |+||...    ..++...+++|+.++.+++++|++.++ +||++||..+|+.....+.++..    .+..+...|+.+|.
T Consensus        97 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~  175 (343)
T 2b69_A           97 HLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKR  175 (343)
T ss_dssp             ECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHH
T ss_pred             ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHH
Confidence            9999754    234556688999999999999999886 99999999999865544444432    24456788999999


Q ss_pred             HHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          213 QAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       213 ~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      ++|++++    +.+++++++||++++|+..
T Consensus       176 ~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~  205 (343)
T 2b69_A          176 VAETMCYAYMKQEGVEVRVARIFNTFGPRM  205 (343)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHhCCcEEEEEEcceeCcCC
Confidence            9998874    4599999999999999864

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.94  E-value=8.8e-27  Score=197.84  Aligned_cols=162  Identities=15%  Similarity=0.102  Sum_probs=129.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++|+|+||||+||||++|+++|+++|+      +...        ....++++.+|++| .+.+.+++.+ ++|+|||
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~--------~~~~~~~~~~D~~d-~~~~~~~~~~~~~d~Vih   67 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE--------DWVFVSSKDADLTD-TAQTRALFEKVQPTHVIH   67 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC--------EEEECCTTTCCTTS-HHHHHHHHHHSCCSEEEE
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc--------cccccCceecccCC-HHHHHHHHhhcCCCEEEE
Confidence            35689999999999999999999999998      1110        01234445789999 8888888875 5999999


Q ss_pred             cCCCCC-----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchh---ccchhh-HHHHHHH
Q 025456          142 ATGFQP-----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI---FLNVFG-LTLIAKL  212 (252)
Q Consensus       142 ~ag~~~-----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~---~~~~~~-~y~~sK~  212 (252)
                      +|+...     ..++...+++|+.++.+++++|++.++++|||+||..+|+.....+..+...   +..+.. .|+.+|.
T Consensus        68 ~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~  147 (319)
T 4b8w_A           68 LAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKR  147 (319)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHHHHHH
T ss_pred             CceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHHHHHH
Confidence            999754     2345567899999999999999999999999999999998776666665541   233333 6999999


Q ss_pred             HHHHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          213 QAEQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       213 ~~e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      ++|++++.    .+++++++||++++|+...
T Consensus       148 ~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~  178 (319)
T 4b8w_A          148 MIDVQNRAYFQQYGCTFTAVIPTNVFGPHDN  178 (319)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECEEECTTCC
T ss_pred             HHHHHHHHHHHhhCCCEEEEeeccccCCCCC
Confidence            99987753    6999999999999998754

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.94  E-value=5.1e-26  Score=197.26  Aligned_cols=170  Identities=17%  Similarity=0.159  Sum_probs=135.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCch--hhhhccc-cCCCCeEEEEeeCCCChHHHHHHHc--CCCcEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLD--KAKTTLS-KDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVV  140 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~--~~~~~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~vi  140 (252)
                      |+|+||||+||||++|+++|+++ |++|++++|...  ..+.... ....+++++.+|++| .+++.+++.  + +|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~-~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD-SAEITRIFEQYQ-PDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC-HHHHHHHHHHHC-CSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCC-HHHHHHHHhhcC-CCEEE
Confidence            46999999999999999999998 799999998652  1111111 013578999999999 888999887  6 99999


Q ss_pred             EcCCCCC----CCCCCCcceehHHHHHHHHHHHHhc--CCC-------EEEEEccceeeccCCC--C--------CCCcc
Q 025456          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKR--GVN-------RFILISSILVNGAAMG--Q--------ILNPA  197 (252)
Q Consensus       141 ~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~--~~~-------~~v~~SS~~v~~~~~~--~--------~~~~~  197 (252)
                      ||||...    ..+++..+++|+.|+.+++++|++.  +++       +||++||..+|+....  .        +.++.
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~  158 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET  158 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC
Confidence            9999754    2356678899999999999999988  876       9999999999875431  0        22232


Q ss_pred             hhccchhhHHHHHHHHHHHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                       .+..+...|+.+|.++|.+++.    .|++++++||++++|+...
T Consensus       159 -~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~  203 (361)
T 1kew_A          159 -TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF  203 (361)
T ss_dssp             -SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC
T ss_pred             -CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCC
Confidence             2345678899999999988764    4999999999999998753

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.93  E-value=4.7e-26  Score=188.30  Aligned_cols=164  Identities=20%  Similarity=0.148  Sum_probs=129.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++++|+++||||+++||+++++.|+++|++|++.+|+.+..++..   .....++.++++|++| ++++++.++.    
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK-KKDVEEFVRRTFET   81 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999987765432   2245679999999999 7666655432    


Q ss_pred             --CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 --DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 --~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        ++|++|||||+...         ++|+..+++|+.|++++.+++    ++++-++||++||......           
T Consensus        82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~-----------  150 (254)
T 4fn4_A           82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRG-----------  150 (254)
T ss_dssp             HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCS-----------
T ss_pred             cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCC-----------
Confidence              49999999996431         246677899999988887776    5566689999999854211           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                       ......|..+|++...+.+       ++||++++|.||.+.|+..
T Consensus       151 -~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~  195 (254)
T 4fn4_A          151 -GFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIG  195 (254)
T ss_dssp             -SSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCT
T ss_pred             -CCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCccc
Confidence             1224679999999887665       4699999999999999864

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.93  E-value=3.4e-26  Score=198.38  Aligned_cols=168  Identities=18%  Similarity=0.234  Sum_probs=132.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhh-hccccCCCCeEEEEeeCCCChHHHHHHHcC----CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAK-TTLSKDNPSLQIVKADVTEGSAKLSEAIGD----DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----~~d  137 (252)
                      +++|+|+||||+||||++|+++|+++| ++|++++|+..... ..+    .++. +.+|++| .+.+.+++.+    ++|
T Consensus        44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~----~~~~-~~~d~~~-~~~~~~~~~~~~~~~~d  117 (357)
T 2x6t_A           44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNL----VDLN-IADYMDK-EDFLIQIMAGEEFGDVE  117 (357)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGT----TTSC-CSEEEEH-HHHHHHHHTTCCCSSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcc----cCce-EeeecCc-HHHHHHHHhhcccCCCC
Confidence            356899999999999999999999999 99999999765431 111    1233 6789998 7888888863    399


Q ss_pred             EEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHH
Q 025456          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (252)
Q Consensus       138 ~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (252)
                      +|||+||....  .++...+++|+.++.+++++|++.++ +||++||..+|+...+.+.++.. +.++...|+.+|.++|
T Consensus       118 ~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~-~~~p~~~Y~~sK~~~E  195 (357)
T 2x6t_A          118 AIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESRE-YEKPLNVFGYSKFLFD  195 (357)
T ss_dssp             EEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGG-GCCCSSHHHHHHHHHH
T ss_pred             EEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcC-CCCCCChhHHHHHHHH
Confidence            99999997542  34556789999999999999999998 99999999999876544444433 4566788999999999


Q ss_pred             HHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          216 QYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       216 ~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      ++++.    .|++++++||++++|+...
T Consensus       196 ~~~~~~~~~~g~~~~ilRp~~v~Gp~~~  223 (357)
T 2x6t_A          196 EYVRQILPEANSQIVGFRYFNVYGPREG  223 (357)
T ss_dssp             HHHHHHGGGCSSCEEEEEECEEESSSCT
T ss_pred             HHHHHHHHHcCCCEEEEecCeEECCCCC
Confidence            98864    4899999999999998653

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.93  E-value=1.6e-26  Score=198.89  Aligned_cols=171  Identities=26%  Similarity=0.258  Sum_probs=126.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh-----ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-----TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      +|+||||||+||||++|+++|+++|++|++++|+.+....     .+. ...+++++.+|++| .+++.+++.+ +|+||
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d-~~~~~~~~~~-~D~Vi   85 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTD-ELSFEAPIAG-CDFVF   85 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTT-SSSSHHHHTT-CSEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCC-hHHHHHHHcC-CCEEE
Confidence            6899999999999999999999999999999998653211     111 12468899999999 7888899998 99999


Q ss_pred             EcCCCCCC--CCC-CCcceehHHHHHHHHHHHHhcC-CCEEEEEcccee-eccC-CC--CCCCcchh-------ccchh-
Q 025456          141 CATGFQPG--WDL-FAPWKVDNFGTVNLVEACRKRG-VNRFILISSILV-NGAA-MG--QILNPAYI-------FLNVF-  204 (252)
Q Consensus       141 ~~ag~~~~--~~~-~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v-~~~~-~~--~~~~~~~~-------~~~~~-  204 (252)
                      |+|+....  .++ .+.+++|+.|+.+++++|++.+ +++|||+||..+ |+.. .+  .+.++...       +.++. 
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (338)
T 2rh8_A           86 HVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPT  165 (338)
T ss_dssp             EESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCC
T ss_pred             EeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCcc
Confidence            99986432  223 3478999999999999999886 899999999873 3321 11  12333211       11111 


Q ss_pred             hHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          205 GLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..|+.+|.++|++++    ++|++++++||++++|+...
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~  204 (338)
T 2rh8_A          166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLT  204 (338)
T ss_dssp             CCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSS
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCC
Confidence            158899999998664    35999999999999998754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.93  E-value=3.8e-26  Score=194.99  Aligned_cols=172  Identities=20%  Similarity=0.240  Sum_probs=125.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhh---hc--cccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAK---TT--LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~---~~--~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      +|+|+||||+||||++++++|+++|++|++++| +++...   ..  +.....+++++.+|++| .+++.+++.+ +|+|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~v   78 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSN-PDSFAAAIEG-CVGI   78 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTC-GGGGHHHHTT-CSEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCC-HHHHHHHHcC-CCEE
Confidence            478999999999999999999999999999998 653211   11  11001257889999999 8899999998 9999


Q ss_pred             EEcCCCCCC--CC-CCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceee-ccCC-CCCCCcchh-------ccchh-h
Q 025456          140 VCATGFQPG--WD-LFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVN-GAAM-GQILNPAYI-------FLNVF-G  205 (252)
Q Consensus       140 i~~ag~~~~--~~-~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~-~~~~-~~~~~~~~~-------~~~~~-~  205 (252)
                      ||+|+....  .+ +...+++|+.|+.+++++|++. ++++||++||..++ +... ..+.++...       +.++. .
T Consensus        79 ih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~  158 (322)
T 2p4h_X           79 FHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGW  158 (322)
T ss_dssp             EECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTH
T ss_pred             EEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCcccc
Confidence            999975321  12 2337899999999999999988 78999999998743 3211 112222210       11222 2


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       206 ~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .|+.+|.++|.++.    ++|++++++||++++|+...
T Consensus       159 ~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~  196 (322)
T 2p4h_X          159 NYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVC  196 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCS
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCC
Confidence            69999999998764    36899999999999998753

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.93  E-value=7.7e-26  Score=190.17  Aligned_cols=163  Identities=23%  Similarity=0.278  Sum_probs=127.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.+++..      ++|
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id   81 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTD-GERIDVVAADVLARYGRVD   81 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCS
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCC-HHHHHHHHHHHHHhCCCCC
Confidence            357999999999999999999999999999999999877665444345679999999999 7777766641      399


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHH----HHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGT----VNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~----~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||||....        .+++..+++|+.|+    +.+++.+++.+.++||++||...+..            ..+..
T Consensus        82 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~~~  149 (281)
T 3m1a_A           82 VLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLS------------FAGFS  149 (281)
T ss_dssp             EEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC------------CTTCH
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCC------------CCCch
Confidence            99999996431        13345678999994    45555557777789999999854321            23457


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .|+.+|++.|.+.+       ..|+++++++||.+.++...
T Consensus       150 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~  190 (281)
T 3m1a_A          150 AYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFG  190 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccccccc
Confidence            89999999997764       26899999999999988643

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.93  E-value=7e-26  Score=197.66  Aligned_cols=171  Identities=18%  Similarity=0.114  Sum_probs=136.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-----hhhcccc----CCCCeEEEEeeCCCChHHHHHHHcC-CC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~-~~  136 (252)
                      ++|+||||+||||++++++|+++|++|++++|+.+.     .+.....    ...+++++.+|++| .+++.+++.+ ++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~  103 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTD-STCLVKIINEVKP  103 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTC-HHHHHHHHHHHCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCC-HHHHHHHHHhcCC
Confidence            799999999999999999999999999999998653     1111100    12468899999999 8888888875 47


Q ss_pred             cEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCC---CEEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       137 d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~---~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                      |+||||||....    .++...+++|+.++.+++++|++.++   ++||++||..+|+.....+.++.. +..+...|+.
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~-~~~~~~~Y~~  182 (375)
T 1t2a_A          104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETT-PFYPRSPYGA  182 (375)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTS-CCCCCSHHHH
T ss_pred             CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccC-CCCCCChhHH
Confidence            999999997542    34556788999999999999999887   799999999999865544444432 3455678999


Q ss_pred             HHHHHHHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          210 AKLQAEQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       210 sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      +|.++|.+++.    .+++++++||++++|+...
T Consensus       183 sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~  216 (375)
T 1t2a_A          183 AKLYAYWIVVNFREAYNLFAVNGILFNHESPRRG  216 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEecccccCCCCC
Confidence            99999988753    5999999999999998643

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.93  E-value=3.6e-26  Score=194.81  Aligned_cols=162  Identities=17%  Similarity=0.117  Sum_probs=126.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh---hhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK---AKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ++++|+|||||||||++|+++|+++|++|++++|+...   ....+..  ...+++++.+|++           + +|+|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----------~-~d~v   73 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----------D-VRLV   73 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----------T-EEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----------c-CCEE
Confidence            47899999999999999999999999999999998752   1111110  1123333444432           5 9999


Q ss_pred             EEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHH
Q 025456          140 VCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (252)
Q Consensus       140 i~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (252)
                      ||+|+...    ..++...++ |+.++.+++++|++.++++|||+||..+|+.....+..+.. +..+...|+.+|.++|
T Consensus        74 i~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~-~~~p~~~Y~~sK~~~E  151 (321)
T 3vps_A           74 YHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDS-PLSPRSPYAASKVGLE  151 (321)
T ss_dssp             EECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTS-CCCCCSHHHHHHHHHH
T ss_pred             EECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCC-CCCCCChhHHHHHHHH
Confidence            99999764    345667778 99999999999999999999999999999877555555433 4456788999999999


Q ss_pred             HHHHH----cCC-cEEEEeCCcccCCCCCC
Q 025456          216 QYIRK----SGI-NYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       216 ~~~~~----~gi-~~~~lrPg~i~~~~~~~  240 (252)
                      ++++.    .++ +++++||++++|+....
T Consensus       152 ~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~  181 (321)
T 3vps_A          152 MVAGAHQRASVAPEVGIVRFFNVYGPGERP  181 (321)
T ss_dssp             HHHHHHHHSSSSCEEEEEEECEEECTTCCT
T ss_pred             HHHHHHHHHcCCCceEEEEeccccCcCCCC
Confidence            88865    589 99999999999987653

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.93  E-value=3.4e-26  Score=197.06  Aligned_cols=168  Identities=16%  Similarity=0.139  Sum_probs=136.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCC-------CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-C
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-------FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-D  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-~  134 (252)
                      .+++|+|+||||+||||++++++|+++|       ++|++++|+.+....   ....+++++.+|++| .+++.+++. +
T Consensus        11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---~~~~~~~~~~~Dl~d-~~~~~~~~~~~   86 (342)
T 2hrz_A           11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---GFSGAVDARAADLSA-PGEAEKLVEAR   86 (342)
T ss_dssp             CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---TCCSEEEEEECCTTS-TTHHHHHHHTC
T ss_pred             CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---ccCCceeEEEcCCCC-HHHHHHHHhcC
Confidence            3568999999999999999999999999       899999998653321   123568899999999 788888884 6


Q ss_pred             CCcEEEEcCCCCC---CCCCCCcceehHHHHHHHHHHHHhcC-----CCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          135 DSEAVVCATGFQP---GWDLFAPWKVDNFGTVNLVEACRKRG-----VNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       135 ~~d~vi~~ag~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~-----~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                       +|+||||||...   ..++...+++|+.|+.+++++|++.+     +++||++||..+|+.....+.++. .+.++...
T Consensus        87 -~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-~~~~~~~~  164 (342)
T 2hrz_A           87 -PDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDE-FHTTPLTS  164 (342)
T ss_dssp             -CSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTT-CCCCCSSH
T ss_pred             -CCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCC-CCCCCcch
Confidence             999999999754   23556678999999999999998776     789999999999986544444443 23456788


Q ss_pred             HHHHHHHHHHHHHH----cCCcEEEEeCCcccCC
Q 025456          207 TLIAKLQAEQYIRK----SGINYTIIRPGGLRNE  236 (252)
Q Consensus       207 y~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~  236 (252)
                      |+.+|.++|++++.    .+++++++|++.+++.
T Consensus       165 Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~  198 (342)
T 2hrz_A          165 YGTQKAICELLLSDYSRRGFFDGIGIRLPTICIR  198 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEec
Confidence            99999999988754    3789999999999873

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.93  E-value=2.1e-26  Score=196.27  Aligned_cols=160  Identities=23%  Similarity=0.282  Sum_probs=130.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--CCCcEEEEcC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCAT  143 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~vi~~a  143 (252)
                      +|+||||+||||++++++|+++  |++|++++|+.+..        .+++++.+|++| .+++.+++.  + +|+|||+|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--------~~~~~~~~D~~d-~~~~~~~~~~~~-~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT--------GGIKFITLDVSN-RDEIDRAVEKYS-IDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC--------TTCCEEECCTTC-HHHHHHHHHHTT-CCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc--------cCceEEEecCCC-HHHHHHHHhhcC-CcEEEECC
Confidence            5899999999999999999998  89999999875432        156789999999 888998887  6 99999999


Q ss_pred             CCCC---CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-
Q 025456          144 GFQP---GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-  219 (252)
Q Consensus       144 g~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-  219 (252)
                      +...   ..++...+++|+.++.+++++|++.++++||++||..+|+........++..+.++...|+.+|.++|.+++ 
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~  150 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQY  150 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHHHH
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHHHHHHH
Confidence            8653   234556788999999999999999999999999999999864322112223345667889999999998765 


Q ss_pred             ---HcCCcEEEEeCCcccCCC
Q 025456          220 ---KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       220 ---~~gi~~~~lrPg~i~~~~  237 (252)
                         +.|++++++||++++++.
T Consensus       151 ~~~~~~~~~~~lR~~~~~g~~  171 (317)
T 3ajr_A          151 YYEKFGLDVRSLRYPGIISYK  171 (317)
T ss_dssp             HHHHHCCEEEEEEECEEECSS
T ss_pred             HHHhcCCeEEEEecCcEeccC
Confidence               459999999999999864

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.93  E-value=2.6e-26  Score=194.16  Aligned_cols=155  Identities=13%  Similarity=0.057  Sum_probs=130.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      |+|+||||+||||++++++|+ +|++|++++|+..              ++.+|++| .+++.+++.+ ++|+|||+||.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~--------------~~~~D~~d-~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK--------------EFCGDFSN-PKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS--------------SSCCCTTC-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc--------------cccccCCC-HHHHHHHHHhcCCCEEEECccc
Confidence            479999999999999999999 8999999998751              24689999 8888888864 49999999997


Q ss_pred             CC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc
Q 025456          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (252)
Q Consensus       146 ~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (252)
                      ..    ..++...+++|+.++.+++++|++.++ +|||+||..+|+...+.+..+.. +.++...|+.+|.++|++++..
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~~~~~  142 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETD-ATSPLNVYGKTKLAGEKALQDN  142 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTS-CCCCSSHHHHHHHHHHHHHHHH
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCCC-CCCCccHHHHHHHHHHHHHHHh
Confidence            54    245566789999999999999999887 89999999999876554444432 4466788999999999999988


Q ss_pred             CCcEEEEeCCcccCCCCC
Q 025456          222 GINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~~~  239 (252)
                      ..+++++||++++|+...
T Consensus       143 ~~~~~ilRp~~v~G~~~~  160 (299)
T 1n2s_A          143 CPKHLIFRTSWVYAGKGN  160 (299)
T ss_dssp             CSSEEEEEECSEECSSSC
T ss_pred             CCCeEEEeeeeecCCCcC
Confidence            889999999999998653

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.93  E-value=3e-26  Score=193.25  Aligned_cols=150  Identities=21%  Similarity=0.262  Sum_probs=128.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--CCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d~vi~~  142 (252)
                      ..++|+|||||||||++++++|+++|++|++++|+                  .+|++| .+++.+++.  + +|+||||
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------~~Dl~d-~~~~~~~~~~~~-~d~vih~   70 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------DLDITN-VLAVNKFFNEKK-PNVVINC   70 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------TCCTTC-HHHHHHHHHHHC-CSEEEEC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc------------------cCCCCC-HHHHHHHHHhcC-CCEEEEC
Confidence            36899999999999999999999999999999885                  279999 888988887  6 9999999


Q ss_pred             CCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHH
Q 025456          143 TGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (252)
Q Consensus       143 ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (252)
                      ||....    .++...+++|+.++.+++++|++.++ +||++||..+|+.....+..+.. +.++...|+.+|.++|+++
T Consensus        71 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~-~~~~~~~Y~~sK~~~E~~~  148 (292)
T 1vl0_A           71 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFD-EVNPQSAYGKTKLEGENFV  148 (292)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTS-CCCCCSHHHHHHHHHHHHH
T ss_pred             CccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCC-CCCCccHHHHHHHHHHHHH
Confidence            997542    35567789999999999999999888 99999999999876544444432 3456678999999999999


Q ss_pred             HHcCCcEEEEeCCcccCC
Q 025456          219 RKSGINYTIIRPGGLRNE  236 (252)
Q Consensus       219 ~~~gi~~~~lrPg~i~~~  236 (252)
                      +..+.+++++||+.++|+
T Consensus       149 ~~~~~~~~~lR~~~v~G~  166 (292)
T 1vl0_A          149 KALNPKYYIVRTAWLYGD  166 (292)
T ss_dssp             HHHCSSEEEEEECSEESS
T ss_pred             HhhCCCeEEEeeeeeeCC
Confidence            988889999999999987

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.93  E-value=7e-25  Score=179.82  Aligned_cols=159  Identities=21%  Similarity=0.287  Sum_probs=118.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      .+++|+|+||||+|+||++|+++|+++| ++|++++|++++..+..   ..+++++++|++| .+++.+++.+ +|+|||
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~---~~~~~~~~~Dl~d-~~~~~~~~~~-~D~vv~   94 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY---PTNSQIIMGDVLN-HAALKQAMQG-QDIVYA   94 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC---CTTEEEEECCTTC-HHHHHHHHTT-CSEEEE
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc---cCCcEEEEecCCC-HHHHHHHhcC-CCEEEE
Confidence            3457999999999999999999999999 89999999987655432   3579999999999 8999999999 999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCC-cchhccchhhHHHHHHHHHHHHHHH
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILN-PAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~-~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      |+|...          ....+.+++++|++.++++||++||..+|+...+.... .......+...|.    .+|+++++
T Consensus        95 ~a~~~~----------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~  160 (236)
T 3qvo_A           95 NLTGED----------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFR----RAADAIEA  160 (236)
T ss_dssp             ECCSTT----------HHHHHHHHHHHHHHTTCCEEEEECCCCC----------------CGGGHHHH----HHHHHHHT
T ss_pred             cCCCCc----------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhcccchHHHHH----HHHHHHHH
Confidence            998521          12457899999999999999999999988754332111 1111122334444    45666778


Q ss_pred             cCCcEEEEeCCcccCCCCCC
Q 025456          221 SGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       221 ~gi~~~~lrPg~i~~~~~~~  240 (252)
                      .|+++++||||.++++...+
T Consensus       161 ~gi~~~~vrPg~i~~~~~~~  180 (236)
T 3qvo_A          161 SGLEYTILRPAWLTDEDIID  180 (236)
T ss_dssp             SCSEEEEEEECEEECCSCCC
T ss_pred             CCCCEEEEeCCcccCCCCcc
Confidence            89999999999999886543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.93  E-value=1.1e-25  Score=188.60  Aligned_cols=164  Identities=17%  Similarity=0.130  Sum_probs=130.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.++++.      ++
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTN-EVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC-HHHHHHHHHHHHHHcCCC
Confidence            4568999999999999999999999999999999999876654333234678999999999 7777766641      39


Q ss_pred             cEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          137 EAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       137 d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      |+||||||....          .+|+..+++|+.|+.++++++    ++.+.++||++||...+..            ..
T Consensus        87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~  154 (271)
T 3tzq_B           87 DIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAA------------YD  154 (271)
T ss_dssp             CEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSB------------CS
T ss_pred             CEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCC------------CC
Confidence            999999997622          123456889999999999988    6667789999999865422            23


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ....|+.+|++.+.+.+       ++|+++++|+||.+.++...
T Consensus       155 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~  198 (271)
T 3tzq_B          155 MSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLE  198 (271)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCcccc
Confidence            35789999999987764       26899999999999998654

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.93  E-value=1.1e-25  Score=184.34  Aligned_cols=158  Identities=18%  Similarity=0.179  Sum_probs=126.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi~  141 (252)
                      ++||+++||||+++||++++++|+++|++|++.+|+.+..+..   ...++..+++|++| +++++++++.  ++|++||
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~---~~~~~~~~~~Dv~~-~~~v~~~~~~~g~iDiLVN   84 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP---RHPRIRREELDITD-SQRLQRLFEALPRLDVLVN   84 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC---CCTTEEEEECCTTC-HHHHHHHHHHCSCCSEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh---hcCCeEEEEecCCC-HHHHHHHHHhcCCCCEEEE
Confidence            4699999999999999999999999999999999998765432   34678999999999 7777776653  5999999


Q ss_pred             cCCCCCC------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHH
Q 025456          142 ATGFQPG------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (252)
Q Consensus       142 ~ag~~~~------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (252)
                      |||+..+      .+|+..+++|+.|++++.+++    ++.+ ++||++||......            ......|..+|
T Consensus        85 NAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~------------~~~~~~Y~asK  151 (242)
T 4b79_A           85 NAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG-GSILNIASMYSTFG------------SADRPAYSASK  151 (242)
T ss_dssp             CCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-EEEEEECCGGGTSC------------CSSCHHHHHHH
T ss_pred             CCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeeccccCC------------CCCCHHHHHHH
Confidence            9997642      346677899999999888876    3444 79999999854211            12247899999


Q ss_pred             HHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          212 LQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       212 ~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+...+.+       ++||++++|.||.+.|++.
T Consensus       152 aav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~  185 (242)
T 4b79_A          152 GAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLG  185 (242)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC--
T ss_pred             HHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhh
Confidence            99887765       4699999999999999864

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.93  E-value=4.1e-26  Score=202.64  Aligned_cols=173  Identities=18%  Similarity=0.163  Sum_probs=130.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh---h---cc---------ccCCCCeEEEEeeCCCChHHH
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---T---TL---------SKDNPSLQIVKADVTEGSAKL  128 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~---~~---------~~~~~~~~~i~~Dl~d~~~~~  128 (252)
                      +.+++|+||||+||||++|+++|+++|++|++++|+.+...   .   .+         .....++.++.+|++| .+.+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l  145 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFEC-MDDV  145 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC----CCC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCC-cccC
Confidence            35789999999999999999999999999999999976221   1   00         0013689999999999 6666


Q ss_pred             HHHHcCCCcEEEEcCCCCC-CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCC-----CCCCCcchh--c
Q 025456          129 SEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-----GQILNPAYI--F  200 (252)
Q Consensus       129 ~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~-----~~~~~~~~~--~  200 (252)
                      . .+.+ +|+||||||... ..++...+++|+.|+.+++++|++ ++++||++||..+ |...     ..+..+...  +
T Consensus       146 ~-~~~~-~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~~  221 (427)
T 4f6c_A          146 V-LPEN-MDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKG  221 (427)
T ss_dssp             C-CSSC-CSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCSS
T ss_pred             C-CcCC-CCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCccccccccccC
Confidence            6 5566 999999999754 356778889999999999999998 7789999999988 4321     122222221  2


Q ss_pred             cchhhHHHHHHHHHHHHHHH---cCCcEEEEeCCcccCCCCCCc
Q 025456          201 LNVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTGN  241 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~---~gi~~~~lrPg~i~~~~~~~~  241 (252)
                      .++.+.|+.+|+++|.+++.   .|++++++|||+++|+...+.
T Consensus       222 ~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~~  265 (427)
T 4f6c_A          222 QLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRW  265 (427)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCEESCSSSCC
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHcCCCEEEEeCCeeecCCCCCc
Confidence            34678899999999998875   799999999999999976553

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.93  E-value=1.8e-25  Score=194.56  Aligned_cols=171  Identities=20%  Similarity=0.194  Sum_probs=131.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh-hcccc-------CCCCeEEEEeeCCCChHHHHHHHcC-CC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-TTLSK-------DNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~-------~~~~~~~i~~Dl~d~~~~~~~~~~~-~~  136 (252)
                      ||+|+||||+||||++++++|+++|++|++++|+.+... ..+..       ...+++++.+|++| .+++.+++.+ ++
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~   79 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSD-TSNLTRILREVQP   79 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSC-HHHHHHHHHHHCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCC-HHHHHHHHHhcCC
Confidence            579999999999999999999999999999999865321 11110       12478899999999 8888888875 47


Q ss_pred             cEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCC---CEEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       137 d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~---~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                      |+||||||....    .++...+++|+.++.+++++|++.++   ++||++||..+|+...+.+..+. .+..+...|+.
T Consensus        80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~-~~~~~~~~Y~~  158 (372)
T 1db3_A           80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-TPFYPRSPYAV  158 (372)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-SCCCCCSHHHH
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCcc-CCCCCCChHHH
Confidence            999999997542    23345578999999999999999887   79999999999986544344443 23455678999


Q ss_pred             HHHHHHHHHHH----cCCcEEEEeCCcccCCCC
Q 025456          210 AKLQAEQYIRK----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       210 sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~  238 (252)
                      +|.++|.+++.    .+++++++||++++|+..
T Consensus       159 sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~  191 (372)
T 1db3_A          159 AKLYAYWITVNYRESYGMYACNGILFNHESPRR  191 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEECCccCCCC
Confidence            99999988753    589999999999998764

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.93  E-value=1.3e-25  Score=186.72  Aligned_cols=161  Identities=19%  Similarity=0.249  Sum_probs=127.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++++|++| .+++.+++..      ++|
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id   84 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTR-QDSIDAAIAATVEHAGGLD   84 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHSSSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC-HHHHHHHHHHHHHHcCCCC
Confidence            468999999999999999999999999999999999877655443334578999999999 7777766651      399


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      +||||||+...        .+|+..+++|+.|+.++++++.    +.+ .++||++||...+..            ....
T Consensus        85 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~  152 (259)
T 4e6p_A           85 ILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRG------------EALV  152 (259)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------CTTB
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccC------------CCCC
Confidence            99999997542        2345567899999999998874    223 469999999865421            1235


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       153 ~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~  192 (259)
T 4e6p_A          153 AIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEH  192 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccch
Confidence            789999999997765       258999999999999975

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.93  E-value=2.3e-25  Score=187.27  Aligned_cols=153  Identities=13%  Similarity=0.119  Sum_probs=126.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ++|+|+|||| ||||++|+++|+++|++|++++|+++.......   .+++++.+|++| .+     +.+ +|+|||+|+
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~D~~d-~~-----~~~-~d~vi~~a~   72 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA---SGAEPLLWPGEE-PS-----LDG-VTHLLISTA   72 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH---TTEEEEESSSSC-CC-----CTT-CCEEEECCC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh---CCCeEEEecccc-cc-----cCC-CCEEEECCC
Confidence            3689999998 999999999999999999999999876544332   579999999998 44     667 999999998


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHh--cCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc-
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRK--RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS-  221 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~--~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~-  221 (252)
                      .....         ...+.++++++++  .++++|||+||.++|+...+.+.++.. +.++...|+.+|.++|++++.. 
T Consensus        73 ~~~~~---------~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~~~~~~  142 (286)
T 3ius_A           73 PDSGG---------DPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETT-PLTPTAARGRWRVMAEQQWQAVP  142 (286)
T ss_dssp             CBTTB---------CHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTS-CCCCCSHHHHHHHHHHHHHHHST
T ss_pred             ccccc---------cHHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCC-CCCCCCHHHHHHHHHHHHHHhhc
Confidence            65432         1236889999988  788999999999999877655544433 4556788999999999999987 


Q ss_pred             CCcEEEEeCCcccCCCC
Q 025456          222 GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~~  238 (252)
                      +++++++||++++|+..
T Consensus       143 ~~~~~ilRp~~v~G~~~  159 (286)
T 3ius_A          143 NLPLHVFRLAGIYGPGR  159 (286)
T ss_dssp             TCCEEEEEECEEEBTTB
T ss_pred             CCCEEEEeccceECCCc
Confidence            99999999999999864

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.93  E-value=1.7e-25  Score=185.01  Aligned_cols=161  Identities=18%  Similarity=0.260  Sum_probs=123.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhhhccccCCCCeEEEEeeCCCChHHHHHHH-------cCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GDD  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~-------~~~  135 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|++ +..++.+.....++.++++|++| .+++.+++       ++ 
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~-   82 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGR-   82 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSC-
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHcCC-
Confidence            5689999999999999999999999999999999988 65544332234578999999999 77776654       35 


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHH----HHhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEA----CRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~----~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||||+....        +++..+++|+.++.+++++    +++.+.++||++||...+..            ...
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~  150 (249)
T 2ew8_A           83 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLK------------IEA  150 (249)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC------------CSS
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccC------------CCC
Confidence            99999999975421        2445678999998888887    45666789999999865432            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|..+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       151 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  192 (249)
T 2ew8_A          151 YTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATT  192 (249)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-----
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccc
Confidence            5789999999987764       2589999999999998864

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.93  E-value=2.3e-26  Score=185.33  Aligned_cols=150  Identities=20%  Similarity=0.222  Sum_probs=128.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++|+|+||||+|+||++++++|+++|+  +|++++|+++.       ...+++++.+|++| .+++.+++   +|+||||
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-------~~~~~~~~~~D~~~-~~~~~~~~---~d~vi~~   72 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPRLDNPVGPLAE-LLPQLDGS---IDTAFCC   72 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTTEECCBSCHHH-HGGGCCSC---CSEEEEC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-------cCCCceEEeccccC-HHHHHHhh---hcEEEEC
Confidence            368999999999999999999999998  99999998754       12578889999998 77777666   7999999


Q ss_pred             CCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH
Q 025456          143 TGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       143 ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      +|...  ..+++..+++|+.++.++++++++.++++||++||..+|+.              +...|+.+|.++|++++.
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~--------------~~~~y~~sK~~~e~~~~~  138 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK--------------SSIFYNRVKGELEQALQE  138 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------CSSHHHHHHHHHHHHHTT
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC--------------CccHHHHHHHHHHHHHHH
Confidence            99754  23555677899999999999999999999999999977642              235789999999999999


Q ss_pred             cCCc-EEEEeCCcccCCCCC
Q 025456          221 SGIN-YTIIRPGGLRNEPPT  239 (252)
Q Consensus       221 ~gi~-~~~lrPg~i~~~~~~  239 (252)
                      .+++ ++++||+.++|+...
T Consensus       139 ~~~~~~~~vrp~~v~g~~~~  158 (215)
T 2a35_A          139 QGWPQLTIARPSLLFGPREE  158 (215)
T ss_dssp             SCCSEEEEEECCSEESTTSC
T ss_pred             cCCCeEEEEeCceeeCCCCc
Confidence            9999 999999999998654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.93  E-value=2e-25  Score=185.43  Aligned_cols=163  Identities=18%  Similarity=0.177  Sum_probs=121.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.++++.      ++
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   82 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTN-EADATAALAFAKQEFGHV   82 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            3568999999999999999999999999999999999876655443334578999999999 7777666541      39


Q ss_pred             cEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc----------CCCEEEEEccceeeccCCCCCC
Q 025456          137 EAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR----------GVNRFILISSILVNGAAMGQIL  194 (252)
Q Consensus       137 d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~----------~~~~~v~~SS~~v~~~~~~~~~  194 (252)
                      |+||||||+...            .+|+..+++|+.|+.++++++...          +.++||++||...+..      
T Consensus        83 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~------  156 (257)
T 3tpc_A           83 HGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDG------  156 (257)
T ss_dssp             CEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC------
T ss_pred             CEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccC------
Confidence            999999997642            124456789999999999988532          4468999999865432      


Q ss_pred             CcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                            ......|+.+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       157 ------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~  201 (257)
T 3tpc_A          157 ------QIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMM  201 (257)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--
T ss_pred             ------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhh
Confidence                  1235789999999987654       3689999999999999864

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.93  E-value=2e-25  Score=208.50  Aligned_cols=170  Identities=16%  Similarity=0.260  Sum_probs=137.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChH-HHHHHHcCCCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA-KLSEAIGDDSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~-~~~~~~~~~~d~vi~  141 (252)
                      +++|+|+||||+||||++++++|+++ |++|++++|+.+......  ...+++++.+|++| .+ .+.+++.+ +|+|||
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~--~~~~v~~v~~Dl~d-~~~~~~~~~~~-~D~Vih  388 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL--NHPHFHFVEGDISI-HSEWIEYHVKK-CDVVLP  388 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT--TCTTEEEEECCTTT-CHHHHHHHHHH-CSEEEE
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc--cCCceEEEECCCCC-cHHHHHHhhcC-CCEEEE
Confidence            46789999999999999999999998 899999999876554332  23579999999998 54 47778888 999999


Q ss_pred             cCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchh------ccchhhHHHHHH
Q 025456          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI------FLNVFGLTLIAK  211 (252)
Q Consensus       142 ~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~------~~~~~~~y~~sK  211 (252)
                      |||....    .++.+.+++|+.++.+++++|++.+ ++|||+||..+|+.....+.++...      ..++.+.|+.+|
T Consensus       389 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK  467 (660)
T 1z7e_A          389 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSK  467 (660)
T ss_dssp             CCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHH
T ss_pred             CceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHH
Confidence            9997542    2455677899999999999999988 8999999999998754444433321      124567899999


Q ss_pred             HHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          212 LQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       212 ~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      .++|++++    +.|++++++|||+++|+..
T Consensus       468 ~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~  498 (660)
T 1z7e_A          468 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL  498 (660)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECSEESTTS
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCCcccCCCc
Confidence            99998874    4599999999999999875

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.93  E-value=2.1e-25  Score=185.71  Aligned_cols=161  Identities=21%  Similarity=0.191  Sum_probs=125.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-------CCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDS  136 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~~~  136 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.++++       + +
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~-i   82 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGG-L   82 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSC-C
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCC-HHHHHHHHHHHHHHcCC-C
Confidence            568999999999999999999999999999999999876554322222358889999999 777777665       5 9


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||.....        +++..+++|+.|+.++++++    ++.+.++||++||...+...            ...
T Consensus        83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~  150 (260)
T 1nff_A           83 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT------------VAC  150 (260)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------TTB
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCC------------CCc
Confidence            9999999975421        24456789999997666554    55667899999998654321            234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..|+.+|++.+.+.+       +.|+++++|+||.++|+..
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  191 (260)
T 1nff_A          151 HGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMT  191 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCcc
Confidence            689999999987764       2589999999999998753

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.93  E-value=1.3e-25  Score=190.48  Aligned_cols=164  Identities=19%  Similarity=0.229  Sum_probs=132.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhh-hccccCCCCeEEEEeeCCCChHHHHHHHcC----CCcEEEE
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAK-TTLSKDNPSLQIVKADVTEGSAKLSEAIGD----DSEAVVC  141 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----~~d~vi~  141 (252)
                      +|+||||+||||++++++|+++| ++|++++|...... ..+.    ++. +.+|++| .+.+.+++.+    ++|+|||
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~----~~~-~~~d~~~-~~~~~~~~~~~~~~~~d~vi~   74 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV----DLN-IADYMDK-EDFLIQIMAGEEFGDVEAIFH   74 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHH----TSC-CSEEEEH-HHHHHHHHTTCCCSSCCEEEE
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcC----cce-ecccccc-HHHHHHHHhccccCCCcEEEE
Confidence            48999999999999999999999 99999999765431 1111    223 6789998 7888888864    4999999


Q ss_pred             cCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH
Q 025456          142 ATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (252)
Q Consensus       142 ~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (252)
                      +||....  .++...+++|+.++.+++++|++.++ +||++||.++|+.....+.++.. +.++...|+.+|.++|++++
T Consensus        75 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~-~~~p~~~Y~~sK~~~e~~~~  152 (310)
T 1eq2_A           75 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESRE-YEKPLNVYGYSKFLFDEYVR  152 (310)
T ss_dssp             CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGG-GCCCSSHHHHHHHHHHHHHH
T ss_pred             CcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCC-CCCCCChhHHHHHHHHHHHH
Confidence            9997543  34556788999999999999999999 99999999999876544444433 45667889999999999886


Q ss_pred             H----cCCcEEEEeCCcccCCCCC
Q 025456          220 K----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       220 ~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      .    .|++++++||++++|+...
T Consensus       153 ~~~~~~g~~~~~lrp~~v~G~~~~  176 (310)
T 1eq2_A          153 QILPEANSQIVGFRYFNVYGPREG  176 (310)
T ss_dssp             HHGGGCSSCEEEEEECEEESSSCG
T ss_pred             HHHHHcCCCEEEEeCCcEECcCCC
Confidence            4    4899999999999998753

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.93  E-value=2.2e-25  Score=184.94  Aligned_cols=160  Identities=16%  Similarity=0.127  Sum_probs=125.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-------CCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDS  136 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~~~  136 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.++++       + +
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~-i   80 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGS-V   80 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSC-C
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHHcCC-C
Confidence            568999999999999999999999999999999999876654333223468899999999 777776654       5 9


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHH----HHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLV----EACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll----~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||....        .+++..+++|+.|+.+++    +.+++.+.++||++||...+..            ....
T Consensus        81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~  148 (254)
T 1hdc_A           81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMG------------LALT  148 (254)
T ss_dssp             CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------CTTC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccC------------CCCc
Confidence            999999997542        134456789999988554    4456667789999999865421            1234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+.+       ..|+++++|+||.+.|+.
T Consensus       149 ~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  188 (254)
T 1hdc_A          149 SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM  188 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcc
Confidence            789999999987764       358999999999998864

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.93  E-value=2.5e-25  Score=185.99  Aligned_cols=166  Identities=20%  Similarity=0.269  Sum_probs=127.1

Q ss_pred             hcccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCChHHHHHHHcC-
Q 025456           60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD-  134 (252)
Q Consensus        60 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~-  134 (252)
                      +..++++|+++||||+||||++++++|+++|++|++++|+.+..++...    ....++.++.+|++| .+++.+++.. 
T Consensus        15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~   93 (267)
T 1vl8_A           15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAV   93 (267)
T ss_dssp             --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHH
Confidence            3456678999999999999999999999999999999999776543221    123568889999999 7766665541 


Q ss_pred             -----CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccce-eeccCCCCCCCc
Q 025456          135 -----DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSIL-VNGAAMGQILNP  196 (252)
Q Consensus       135 -----~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~-v~~~~~~~~~~~  196 (252)
                           ++|+||||||+....        +++..+++|+.|+.++++++    ++.+.++||++||.. .+.         
T Consensus        94 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------  164 (267)
T 1vl8_A           94 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV---------  164 (267)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC---------
T ss_pred             HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc---------
Confidence                 399999999975421        23456789999999998877    345668999999975 221         


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         +......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       165 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  210 (267)
T 1vl8_A          165 ---TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMT  210 (267)
T ss_dssp             ---CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTT
T ss_pred             ---CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccc
Confidence               11235789999999988764       2589999999999998863

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.93  E-value=3.7e-25  Score=184.80  Aligned_cols=163  Identities=14%  Similarity=0.162  Sum_probs=125.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc---C--CCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D--NPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~--~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      .++++|+++||||+|+||++++++|+++|++|++++|+.+..++....   .  ..++.++.+|++| .+++.++++.  
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~   87 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATT   87 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC-HHHHHHHHHHHH
Confidence            346789999999999999999999999999999999998765432211   1  4578999999999 7777666541  


Q ss_pred             ----CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 ----DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                          ++|+||||||+...         .+++..+++|+.|+.++++++    ++.+.++||++||...+..         
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------  158 (267)
T 1iy8_A           88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRG---------  158 (267)
T ss_dssp             HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSB---------
T ss_pred             HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccC---------
Confidence                39999999997542         134456789999988666554    5567789999999854321         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                         ......|+.+|++.+.+.+       +.|+++++|+||.+.++.
T Consensus       159 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  202 (267)
T 1iy8_A          159 ---IGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPM  202 (267)
T ss_dssp             ---CSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHH
T ss_pred             ---CCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcc
Confidence               1235789999999987764       358999999999998874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.93  E-value=4.6e-25  Score=183.49  Aligned_cols=163  Identities=17%  Similarity=0.153  Sum_probs=127.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      +++++|+++||||+||||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+++.     
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANH   83 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999876543221   123568899999999 777776662     


Q ss_pred             --CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        +++|+||||||+...        .+++..+++|+.|+.++++++    ++.+.++||++||...+..           
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  152 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA-----------  152 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSC-----------
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC-----------
Confidence              249999999997542        134456789999999998887    4566789999999864321           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       ......|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       153 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  196 (260)
T 2ae2_A          153 -VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSL  196 (260)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHH
T ss_pred             -CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcc
Confidence             1234789999999998765       248999999999998864

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.93  E-value=1.1e-25  Score=186.14  Aligned_cols=162  Identities=16%  Similarity=0.120  Sum_probs=128.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++|+++||||+++||+++++.|+++|++|++.+|+.+..++..   .....++..+++|++| ++++++.++.     
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTD-ELAIEAAFSKLDAEG   84 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHC
Confidence            567999999999999999999999999999999999987665432   2245678999999999 7766665532     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----H-hcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----R-KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~-~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       ++|++|||||+...        ++|+..+++|+.|++++.+++    + +.+-++||++||......            
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~------------  152 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAA------------  152 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSB------------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCC------------
Confidence             59999999997653        246677899999999888776    2 334579999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ......|..+|.+...+.+       ++||++++|.||.+.++.
T Consensus       153 ~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~  196 (255)
T 4g81_D          153 RPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDM  196 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGG
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCch
Confidence            1234779999999887765       469999999999999875

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.93  E-value=3.6e-25  Score=182.79  Aligned_cols=164  Identities=18%  Similarity=0.198  Sum_probs=126.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAV  139 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~v  139 (252)
                      ...++|+|+||||+||||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.+++..  ++|+|
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~id~l   88 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLAN-KEECSNLISKTSNLDIL   88 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTS-HHHHHHHHHTCSCCSEE
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCC-HHHHHHHHHhcCCCCEE
Confidence            45678999999999999999999999999999999999877665443334578999999999 8888887763  49999


Q ss_pred             EEcCCCCC--------CCCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          140 VCATGFQP--------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       140 i~~ag~~~--------~~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      |||||+..        ..+++..+++|+.++.++++++    ++.+.++||++||...+...            .....|
T Consensus        89 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~~Y  156 (249)
T 3f9i_A           89 VCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGN------------PGQANY  156 (249)
T ss_dssp             EECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CC------------SCSHHH
T ss_pred             EECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCC------------CCCchh
Confidence            99999754        2345567899999999998876    34566799999998655321            235789


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +.+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       157 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  194 (249)
T 3f9i_A          157 CASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMT  194 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcc
Confidence            999999887664       3589999999999998764

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.93  E-value=1.9e-25  Score=187.65  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=128.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++++|++| .+++.++++.      +
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~  101 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSS-AKDAESMVEKTTAKWGR  101 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence            45678999999999999999999999999999999999877655443334678999999999 7776666541      3


Q ss_pred             CcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||||+...        .+|+..+++|+.|+.++++++    ++.+.++||++||...+..            ...
T Consensus       102 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~  169 (277)
T 4dqx_A          102 VDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSA------------IAD  169 (277)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSC------------CTT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcC------------CCC
Confidence            9999999997542        134456789999999888887    3445579999999865422            223


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       170 ~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~  210 (277)
T 4dqx_A          170 RTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPY  210 (277)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCch
Confidence            5789999999987764       358999999999998875

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.93  E-value=1.4e-25  Score=196.10  Aligned_cols=170  Identities=18%  Similarity=0.126  Sum_probs=134.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-----hhhcccc---CCC-CeEEEEeeCCCChHHHHHHHcC-CC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLSK---DNP-SLQIVKADVTEGSAKLSEAIGD-DS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~---~~~-~~~~i~~Dl~d~~~~~~~~~~~-~~  136 (252)
                      ++|+||||+||||++|+++|+++|++|++++|+.+.     .+.....   ... +++++.+|++| .+++.+++.+ ++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~  107 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTD-ASSLRRWIDVIKP  107 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTC-HHHHHHHHHHHCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCC-HHHHHHHHHhcCC
Confidence            799999999999999999999999999999998654     1111110   012 78999999999 8888888875 37


Q ss_pred             cEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCC-----EEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN-----RFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       137 d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~-----~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      |+||||||....    .++...+++|+.++.+++++|++.+++     +|||+||..+|+...+ +..+. .+..+...|
T Consensus       108 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~-~~~~~~~~Y  185 (381)
T 1n7h_A          108 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSET-TPFHPRSPY  185 (381)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTT-SCCCCCSHH
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCC-CCCCCCCch
Confidence            999999997542    345567899999999999999877654     9999999999987644 44433 234567889


Q ss_pred             HHHHHHHHHHHHH----cCCcEEEEeCCcccCCCCC
Q 025456          208 LIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       208 ~~sK~~~e~~~~~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      +.+|.++|.+++.    .+++++++||++++++...
T Consensus       186 ~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~  221 (381)
T 1n7h_A          186 AASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  221 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCC
Confidence            9999999988754    4899999999999998643

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.93  E-value=2.3e-25  Score=185.57  Aligned_cols=161  Identities=17%  Similarity=0.215  Sum_probs=126.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc---C-CCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D-NPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~-~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.++.++....   . ..++.++.+|++| .+++.+++.     
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT-PEGVDAVVESVRSS   82 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999997665432211   1 3578999999999 777776664     


Q ss_pred             --CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 --DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        + +|+||||||.....        +|+..+++|+.++.++++++    ++.+.++||++||...+...          
T Consensus        83 ~g~-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  151 (263)
T 3ai3_A           83 FGG-ADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL----------  151 (263)
T ss_dssp             HSS-CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred             cCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC----------
Confidence              5 99999999975421        24456789999999888887    34567899999998655321          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        .....|+.+|++.+.+.+       ++|+++++|+||.++|+.
T Consensus       152 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  194 (263)
T 3ai3_A          152 --WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPD  194 (263)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHH
T ss_pred             --CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence              234689999999987764       268999999999999874

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.92  E-value=1.5e-25  Score=185.35  Aligned_cols=163  Identities=17%  Similarity=0.166  Sum_probs=128.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~  136 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++.......+..++++|++| .++++++++      +++
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTN-PESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCC-HHHHHHHHHHHHHHcCCC
Confidence            4578999999999999999999999999999999999876654332223457889999999 777766654      139


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||+...        .+|+..+++|+.|+.++++++.    +.+.++||++||...+..            ....
T Consensus        85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~~  152 (248)
T 3op4_A           85 DILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMG------------NAGQ  152 (248)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC------------CTTC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCC------------CCCC
Confidence            999999997642        2345668999999999988873    456679999999754321            2235


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..|+.+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       153 ~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~  193 (248)
T 3op4_A          153 ANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMT  193 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchh
Confidence            789999998887664       3589999999999999864

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.92  E-value=4.7e-25  Score=184.24  Aligned_cols=159  Identities=20%  Similarity=0.252  Sum_probs=126.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d  137 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++..   ..++.++.+|++| .+++.+++.      +++|
T Consensus        14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD   89 (266)
T 3p19_A           14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN---LPNTLCAQVDVTD-KYTFDTAITRAEKIYGPAD   89 (266)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC---CTTEEEEECCTTC-HHHHHHHHHHHHHHHCSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh---cCCceEEEecCCC-HHHHHHHHHHHHHHCCCCC
Confidence            46899999999999999999999999999999999987765543   2478999999999 776666654      1399


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||||+....        +|+..+++|+.|+.++++++    ++.+.++||++||...+..            .....
T Consensus        90 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~------------~~~~~  157 (266)
T 3p19_A           90 AIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKT------------FPDHA  157 (266)
T ss_dssp             EEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC------------CTTCH
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCC------------CCCCc
Confidence            999999975421        24456889999999976665    5667789999999865422            12357


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       158 ~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~  197 (266)
T 3p19_A          158 AYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELL  197 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGG
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchh
Confidence            89999999987654       3689999999999999864

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.92  E-value=7.6e-25  Score=181.99  Aligned_cols=164  Identities=16%  Similarity=0.131  Sum_probs=127.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .+++|+++||||+|+||++++++|+++|++|++++|+.+..++..   .....++.++++|++| .+++.++++.     
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN-TDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            457899999999999999999999999999999999987665432   2234578999999999 7766665541     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH-----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC-----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~-----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       ++|+||||||....        .+|+..+++|+.++.++++++     ++.+.++||++||...+..            
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------  149 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDA------------  149 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSC------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccC------------
Confidence             39999999996542        234566899999999999887     3444679999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHH--------HcCCcEEEEeCCcccCCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR--------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~--------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ......|..+|++.+.+.+        +.|+++++|+||.+.++...
T Consensus       150 ~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~  196 (257)
T 3imf_A          150 GPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGA  196 (257)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcch
Confidence            1235779999998886653        35999999999999988643

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.92  E-value=1.1e-24  Score=181.57  Aligned_cols=161  Identities=15%  Similarity=0.152  Sum_probs=126.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~~  135 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+++..++.......++.++++|++| .+++.+++.       + 
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~g~-   86 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTK-RASVDAAMQKAIDALGG-   86 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTC-HHHHHHHHHHHHHHHTC-
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC-HHHHHHHHHHHHHHcCC-
Confidence            3568999999999999999999999999999999999876654333222368899999999 777776665       5 


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      +|+||||||.....        +++..+++|+.++.++++++.    +.+ .++||++||...+..            ..
T Consensus        87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~  154 (263)
T 3ak4_A           87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVG------------AP  154 (263)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC------------CT
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccC------------CC
Confidence            99999999975421        344567899999999988874    334 579999999854321            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       155 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  196 (263)
T 3ak4_A          155 LLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAM  196 (263)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChh
Confidence            34789999999987764       249999999999999874

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.92  E-value=5.4e-25  Score=184.40  Aligned_cols=165  Identities=14%  Similarity=0.162  Sum_probs=128.9

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      ..+++|+++||||+||||++++++|+++|++|++++|+.+..+.....  ...++.++.+|++| .+++.+++.      
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   90 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKH   90 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            345789999999999999999999999999999999987654432211  12378999999999 777776665      


Q ss_pred             -CCCcEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcch
Q 025456          134 -DDSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                       + +|+||||||....          .+++..+++|+.++.++++++..    .+.++||++||..+|....        
T Consensus        91 ~~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------  161 (278)
T 2bgk_A           91 GK-LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE--------  161 (278)
T ss_dssp             SC-CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT--------
T ss_pred             CC-CCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC--------
Confidence             5 9999999997532          12345678999999999998854    4667999999987654221        


Q ss_pred             hccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~~  239 (252)
                         .....|+.+|++.+.+++.       .|+++++++||+++|+...
T Consensus       162 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~  206 (278)
T 2bgk_A          162 ---GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLT  206 (278)
T ss_dssp             ---TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCT
T ss_pred             ---CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhh
Confidence               1346899999999887642       5899999999999998753

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.92  E-value=1.8e-25  Score=183.47  Aligned_cols=164  Identities=20%  Similarity=0.211  Sum_probs=128.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAV  139 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~v  139 (252)
                      .++++|+++||||+++||+++++.|+++|++|++.+|+..+ ..+.+.....++..+.+|++| ++++++.+.. ++|++
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~g~iDiL   83 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFAD-PLAAKDSFTDAGFDIL   83 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS-TTTTTTSSTTTCCCEE
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC-HHHHHHHHHhCCCCEE
Confidence            46789999999999999999999999999999999998642 223333355678999999999 6767666543 69999


Q ss_pred             EEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcC-CCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       140 i~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      |||||+...        .+|+..+++|+.|++++.+++    ++.+ -++||++||......            ......
T Consensus        84 VNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g------------~~~~~~  151 (247)
T 4hp8_A           84 VNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQG------------GIRVPS  151 (247)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------CSSCHH
T ss_pred             EECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCC------------CCCChH
Confidence            999997552        246677899999999988875    3443 479999999854321            112467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |..+|++...+.+       ++||++++|.||.+.+++.
T Consensus       152 Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~  190 (247)
T 4hp8_A          152 YTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNT  190 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcch
Confidence            9999999887765       4699999999999998753

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.92  E-value=3.2e-25  Score=186.42  Aligned_cols=145  Identities=23%  Similarity=0.279  Sum_probs=123.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      |+|+|||||||||++++++|+++  |++|++++|++++...+..   .+++++.+|++| .+++.+++.+ +|+|||+|+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~---~~~~~~~~D~~d-~~~l~~~~~~-~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD---QGVEVRHGDYNQ-PESLQKAFAG-VSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH---TTCEEEECCTTC-HHHHHHHTTT-CSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh---cCCeEEEeccCC-HHHHHHHHhc-CCEEEEcCC
Confidence            57999999999999999999999  9999999998765443222   468999999999 8999999998 999999998


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGIN  224 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~  224 (252)
                      ....      -++|+.++.+++++|++.++++||++||.++|..               ...|+.+|.++|+++++.|++
T Consensus        76 ~~~~------~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~---------------~~~y~~~K~~~E~~~~~~~~~  134 (287)
T 2jl1_A           76 PHYD------NTLLIVQHANVVKAARDAGVKHIAYTGYAFAEES---------------IIPLAHVHLATEYAIRTTNIP  134 (287)
T ss_dssp             CCSC------HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC---------------CSTHHHHHHHHHHHHHHTTCC
T ss_pred             CCcC------chHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC---------------CCchHHHHHHHHHHHHHcCCC
Confidence            6321      1579999999999999999999999999866421               126889999999999999999


Q ss_pred             EEEEeCCcccCCC
Q 025456          225 YTIIRPGGLRNEP  237 (252)
Q Consensus       225 ~~~lrPg~i~~~~  237 (252)
                      ++++||+.++++.
T Consensus       135 ~~ilrp~~~~~~~  147 (287)
T 2jl1_A          135 YTFLRNALYTDFF  147 (287)
T ss_dssp             EEEEEECCBHHHH
T ss_pred             eEEEECCEecccc
Confidence            9999999887754

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.92  E-value=8.4e-25  Score=182.24  Aligned_cols=164  Identities=20%  Similarity=0.197  Sum_probs=119.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      +++++|+++||||+||||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+++.     
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSM   88 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999776543221   124578999999999 777766652     


Q ss_pred             --CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 --DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        +++|+||||||.....        +++..+++|+.++.++++++    ++.+.++||++||...+...          
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----------  158 (266)
T 1xq1_A           89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA----------  158 (266)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------------
T ss_pred             hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCC----------
Confidence              2399999999975321        23445789999999999888    55677899999998665321          


Q ss_pred             ccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                        .....|+.+|++.+.+.+.       .|+++++|+||+++|+..
T Consensus       159 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  202 (266)
T 1xq1_A          159 --SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLA  202 (266)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----
T ss_pred             --CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchh
Confidence              2246799999999877642       489999999999999864

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.92  E-value=5.5e-25  Score=182.76  Aligned_cols=163  Identities=18%  Similarity=0.201  Sum_probs=128.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++++|++| .+++++++.     
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~   86 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD-EQHREAVIKAALDQ   86 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999987654422   2234679999999999 776666554     


Q ss_pred             -CCCcEEEEcCCCCCCC-------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          134 -DDSEAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~~-------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       +++|+||||||.....       +++..+++|+.|+.++++++    ++.+.++||++||...+..            .
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~  154 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENT------------N  154 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCC------------C
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCC------------C
Confidence             1399999999975432       34456789999999999887    4556679999999864321            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|++.+.+.+       ..|+++++++||.+.++.
T Consensus       155 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~  197 (256)
T 3gaf_A          155 VRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDA  197 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCch
Confidence            235789999999987764       258999999999998874

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.92  E-value=2.6e-25  Score=185.74  Aligned_cols=162  Identities=20%  Similarity=0.191  Sum_probs=124.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~  136 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.++.++.......++.++.+|++| .++++++++      +++
T Consensus        24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSD-RKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTS-HHHHHHHHHHHHHHHTSC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCC-HHHHHHHHHHHHHHcCCC
Confidence            4578999999999999999999999999999999999877665443334679999999999 777766654      139


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||+...        .+|+..+++|+.|+.++++++    ++.+.++||++||...+..            ....
T Consensus       103 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~------------~~~~  170 (266)
T 3grp_A          103 DILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVG------------NPGQ  170 (266)
T ss_dssp             CEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------------------CH
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCC------------CCCc
Confidence            999999997542        235566889999977776665    4566679999999865421            1235


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       171 ~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~  210 (266)
T 3grp_A          171 TNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAM  210 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCch
Confidence            789999998887664       358999999999998864

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.92  E-value=2.2e-25  Score=184.17  Aligned_cols=162  Identities=21%  Similarity=0.231  Sum_probs=128.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~  136 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++.......++.++++|++| .++++++++      +++
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   81 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISD-PGSVKALFAEIQALTGGI   81 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCCC
Confidence            4578999999999999999999999999999999999877665443234678999999999 777766654      139


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHH----HHhcC-CCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEA----CRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~----~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |+||||||+....        +|+..+++|+.|+.+++++    +++.+ .++||++||...+..            ...
T Consensus        82 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~  149 (247)
T 3rwb_A           82 DILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAG------------TPN  149 (247)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHT------------CTT
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccC------------CCC
Confidence            9999999975432        3455689999999999888    45555 579999999854322            223


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +..|..+|++.+.+.+       +.|+++++|+||.+.++.
T Consensus       150 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~  190 (247)
T 3rwb_A          150 MAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDG  190 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCcc
Confidence            5789999998887664       368999999999998864

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.92  E-value=3.6e-25  Score=185.97  Aligned_cols=162  Identities=19%  Similarity=0.170  Sum_probs=127.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++++|++| .+++.++++.      ++
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~i  104 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSD-EQQIIAMVDACVAAFGGV  104 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTC-HHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCC-HHHHHHHHHHHHHHcCCC
Confidence            4578999999999999999999999999999999999877655433234678999999999 7666655541      39


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||+...        .+++..+++|+.|+.++++++    ++.+.++||++||...+..            ....
T Consensus       105 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~------------~~~~  172 (277)
T 3gvc_A          105 DKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVA------------VGGT  172 (277)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC------------CTTB
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC------------CCCc
Confidence            999999997542        134456889999999988887    3456679999999854321            2235


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       173 ~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~  212 (277)
T 3gvc_A          173 GAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPM  212 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCch
Confidence            789999999987765       368999999999999874

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.92  E-value=1.4e-24  Score=181.85  Aligned_cols=164  Identities=18%  Similarity=0.153  Sum_probs=125.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .++++|+++||||+|+||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.++++     
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHV   95 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999987654322   1124578999999999 777766652     


Q ss_pred             --CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 --DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        +++|+||||||.....        +++..+++|+.++.++++++    ++.+.++||++||...+...          
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----------  165 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL----------  165 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC----------
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCC----------
Confidence              3499999999975421        24455789999999998887    35566799999998654321          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        .....|+.+|++.+.+.+       ..|+++++|+||.+.|+..
T Consensus       166 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  209 (273)
T 1ae1_A          166 --PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLV  209 (273)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----
T ss_pred             --CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchh
Confidence              235789999999987764       2599999999999999864

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.92  E-value=7e-25  Score=184.01  Aligned_cols=160  Identities=22%  Similarity=0.223  Sum_probs=123.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc------ccCCCCeEEEEeeCCCChHHHHHHHc----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL------SKDNPSLQIVKADVTEGSAKLSEAIG----  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~------~~~~~~~~~i~~Dl~d~~~~~~~~~~----  133 (252)
                      +++|+++||||+||||++++++|+++|++|++++|++++.++..      .....++.++.+|++| .+++.+++.    
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~   82 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG   82 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC-HHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999977654321      1123468899999999 777776665    


Q ss_pred             ---CCCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEcccee-eccCCCCC
Q 025456          134 ---DDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILV-NGAAMGQI  193 (252)
Q Consensus       134 ---~~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v-~~~~~~~~  193 (252)
                         + +|+||||||....            .+++..+++|+.|+.++++++..    .+ ++||++||... +..     
T Consensus        83 ~~g~-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~-----  155 (278)
T 1spx_A           83 KFGK-LDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHA-----  155 (278)
T ss_dssp             HHSC-CCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSC-----
T ss_pred             HcCC-CCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccC-----
Confidence               5 9999999997532            12345578999999999888743    36 79999999854 321     


Q ss_pred             CCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                             ......|+.+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       156 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  200 (278)
T 1spx_A          156 -------TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFG  200 (278)
T ss_dssp             -------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC-
T ss_pred             -------CCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccc
Confidence                   1234679999999987764       2689999999999999864

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.92  E-value=8.8e-25  Score=183.80  Aligned_cols=164  Identities=18%  Similarity=0.198  Sum_probs=127.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc------------hhhhh---ccccCCCCeEEEEeeCCCChHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL------------DKAKT---TLSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~------------~~~~~---~~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.            +..++   .+.....++.++++|++| .++
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~   85 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKD-RAA   85 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHH
Confidence            45789999999999999999999999999999999973            22221   112234678999999999 777


Q ss_pred             HHHHHcC------CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccC
Q 025456          128 LSEAIGD------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAA  189 (252)
Q Consensus       128 ~~~~~~~------~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~  189 (252)
                      +.++++.      ++|+||||||+....        +|+..+++|+.|+.++++++    ++.+.++||++||...+.. 
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-  164 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSA-  164 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC-
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCC-
Confidence            6666541      399999999975421        24456789999999999886    4556679999999865422 


Q ss_pred             CCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          190 MGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       190 ~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                                 ......|+.+|++.+.+.+       .+|+++++|+||++.|+...
T Consensus       165 -----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~  210 (281)
T 3s55_A          165 -----------NFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTH  210 (281)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTS
T ss_pred             -----------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCcccc
Confidence                       1235789999999987764       35899999999999998754

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.92  E-value=1.4e-24  Score=178.77  Aligned_cols=158  Identities=18%  Similarity=0.114  Sum_probs=124.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~v  139 (252)
                      +|+|+||||+++||++++++|+++|++|++++|+.+...+... ...++..+++|++| ++++++.++.      ++|++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~g~iDiL   79 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK-ERPNLFYFHGDVAD-PLTLKKFVEYAMEKLQRIDVL   79 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT-TCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hcCCEEEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            5899999999999999999999999999999999877665443 44678999999999 6666655431      49999


Q ss_pred             EEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       140 i~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      |||||....        ++|+..+++|+.|++++.+++    ++.+ +++|++||...+..            ......|
T Consensus        80 VNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~~------------~~~~~~Y  146 (247)
T 3ged_A           80 VNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQS------------EPDSEAY  146 (247)
T ss_dssp             EECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTSC------------CTTCHHH
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeecccccC------------CCCCHHH
Confidence            999997552        246677899999999888876    3444 79999999854321            1224679


Q ss_pred             HHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          208 LIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       208 ~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                      ..+|++...+.+.      .++++++|.||.+.+++.
T Consensus       147 ~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~  183 (247)
T 3ged_A          147 ASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQ  183 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCc
Confidence            9999988876642      489999999999988764

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.92  E-value=7.2e-25  Score=180.24  Aligned_cols=161  Identities=16%  Similarity=0.148  Sum_probs=127.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi  140 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++.... ..+++++.+|++| .+++.++++.  ++|+||
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~D~~~-~~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE-CPGIEPVCVDLGD-WDATEKALGGIGPVDLLV   81 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-STTCEEEECCTTC-HHHHHHHHTTCCCCSEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-ccCCCcEEecCCC-HHHHHHHHHHcCCCCEEE
Confidence            35689999999999999999999999999999999998765543321 2357888999999 8888888864  489999


Q ss_pred             EcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----cC-CCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||||....        .+++..+++|+.++.++++++.+    .+ .++||++||..++...            .....|
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~Y  149 (244)
T 1cyd_A           82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------PNLITY  149 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TTBHHH
T ss_pred             ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC------------CCcchh
Confidence            99996542        12345678999999998888743    35 5799999998655321            234689


Q ss_pred             HHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      +.+|++.|.+++.       .|+++++++||.++|+.
T Consensus       150 ~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~  186 (244)
T 1cyd_A          150 SSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDM  186 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcc
Confidence            9999999987652       58999999999999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.92  E-value=3.8e-24  Score=178.24  Aligned_cols=162  Identities=22%  Similarity=0.276  Sum_probs=126.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccC-CCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKD-NPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~-~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++..   ... ..++.++++|++| .++++++++     
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD-RAQCDALAGRAVEE   85 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999987654422   112 2578999999999 777666554     


Q ss_pred             --CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 --DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        + +|+||||||+....        +|+..+++|+.+++++++++..    .+.++||++||......           
T Consensus        86 ~g~-id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~-----------  153 (262)
T 3pk0_A           86 FGG-IDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPIT-----------  153 (262)
T ss_dssp             HSC-CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTB-----------
T ss_pred             hCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccC-----------
Confidence              5 99999999975422        2345579999999998888743    46789999999753200           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +...+..|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       154 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~  198 (262)
T 3pk0_A          154 GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEG  198 (262)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHH
T ss_pred             CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcc
Confidence            11235789999999997765       269999999999999864

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.92  E-value=6.1e-25  Score=182.82  Aligned_cols=163  Identities=18%  Similarity=0.117  Sum_probs=127.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-------C
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~  134 (252)
                      +++++|+++||||+|+||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.+++.       +
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~   86 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS-EKDVQTALALAKGKFGR   86 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCC
Confidence            34578999999999999999999999999999999998766544332223578999999999 777777665       5


Q ss_pred             CCcEEEEcCCCCCCC--------------CCCCcceehHHHHHHHHHHHHhc----------CCCEEEEEccceeeccCC
Q 025456          135 DSEAVVCATGFQPGW--------------DLFAPWKVDNFGTVNLVEACRKR----------GVNRFILISSILVNGAAM  190 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------------~~~~~~~~n~~g~~~ll~~~~~~----------~~~~~v~~SS~~v~~~~~  190 (252)
                       +|+||||||.....              +++..+++|+.++.++++++...          +.++||++||...+..  
T Consensus        87 -id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--  163 (265)
T 2o23_A           87 -VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG--  163 (265)
T ss_dssp             -CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC--
T ss_pred             -CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCC--
Confidence             99999999975321              23455789999999999988543          5679999999865432  


Q ss_pred             CCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          191 GQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       191 ~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                                ......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       164 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  208 (265)
T 2o23_A          164 ----------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLL  208 (265)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--
T ss_pred             ----------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccc
Confidence                      1235789999998887654       3589999999999998764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.92  E-value=6.3e-25  Score=182.84  Aligned_cols=160  Identities=18%  Similarity=0.291  Sum_probs=126.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+...      ..++.++.+|++| .+++.+++..      ++
T Consensus        25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~i   97 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA------DPDIHTVAGDISK-PETADRIVREGIERFGRI   97 (260)
T ss_dssp             HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS------STTEEEEESCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc------cCceEEEEccCCC-HHHHHHHHHHHHHHCCCC
Confidence            356899999999999999999999999999999999865432      2478999999999 7777766541      39


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||+....        +++..+++|+.|+.++++++    ++.+.++||++||..++....          ..+.
T Consensus        98 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------~~~~  167 (260)
T 3un1_A           98 DSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMV----------GMPS  167 (260)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBT----------TCCC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCC----------CCcc
Confidence            9999999975422        34456789999999999887    566778999999975432111          1234


Q ss_pred             hHHHHHHHHHHHHHH----H---cCCcEEEEeCCcccCCCCC
Q 025456          205 GLTLIAKLQAEQYIR----K---SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~----~---~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..|+.+|++.+.+.+    +   .|+++++|+||.+.++...
T Consensus       168 ~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~  209 (260)
T 3un1_A          168 ALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHP  209 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCC
Confidence            679999999988765    2   4899999999999998753

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.92  E-value=1e-24  Score=179.55  Aligned_cols=169  Identities=17%  Similarity=0.108  Sum_probs=123.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--------  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--------  133 (252)
                      |++++++||||+|+||++++++|+++|  ++|++++|+.+..+........++.++.+|++| .+++.+++.        
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~   79 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGG
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCC-HHHHHHHHHHHHHhcCC
Confidence            357899999999999999999999999  999999999776544322124578999999999 777776665        


Q ss_pred             -CCCcEEEEcCCCCC-CC--------CCCCcceehHHHHHHHHHHHHh----c------C-----CCEEEEEccceeecc
Q 025456          134 -DDSEAVVCATGFQP-GW--------DLFAPWKVDNFGTVNLVEACRK----R------G-----VNRFILISSILVNGA  188 (252)
Q Consensus       134 -~~~d~vi~~ag~~~-~~--------~~~~~~~~n~~g~~~ll~~~~~----~------~-----~~~~v~~SS~~v~~~  188 (252)
                       + +|+||||||... ..        +++..+++|+.++.++++++..    .      +     .++||++||...+..
T Consensus        80 ~~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~  158 (250)
T 1yo6_A           80 DG-LSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT  158 (250)
T ss_dssp             GC-CCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred             CC-CcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccC
Confidence             6 999999999754 11        2334578999999998888743    2      4     679999999865432


Q ss_pred             CCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ....     ..+..+...|+.+|++.+.+++       +.|+++++++||.+.++...
T Consensus       159 ~~~~-----~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~  211 (250)
T 1yo6_A          159 DNTS-----GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG  211 (250)
T ss_dssp             TCCS-----TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------
T ss_pred             Cccc-----ccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCC
Confidence            2100     0111345789999999988764       24899999999999988643

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.92  E-value=1.5e-24  Score=180.32  Aligned_cols=163  Identities=17%  Similarity=0.192  Sum_probs=127.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      ..+++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.     
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   88 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK-AEDRERLVAMAVNL   88 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999999976654322   1134568899999999 776666554     


Q ss_pred             --CCCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          134 --DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                        + +|+||||||....         .+|+..+++|+.++.++++++    ++.+.++||++||...+..          
T Consensus        89 ~g~-iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------  157 (260)
T 2zat_A           89 HGG-VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHP----------  157 (260)
T ss_dssp             HSC-CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC----------
T ss_pred             cCC-CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCC----------
Confidence              5 9999999997431         124456789999998888886    4566789999999865532          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ......|+.+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       158 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  202 (260)
T 2zat_A          158 --FPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFS  202 (260)
T ss_dssp             --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTT
T ss_pred             --CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccc
Confidence              1235789999999988765       2489999999999998863

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.92  E-value=6.9e-24  Score=175.18  Aligned_cols=161  Identities=17%  Similarity=0.262  Sum_probs=125.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.      +
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD-RQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            56899999999999999999999999999999999977654322   1124578999999999 777766554      1


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||+....        +++..+++|+.|+.++++++.    +.+ ++||++||...+..            ..
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~------------~~  150 (247)
T 2jah_A           84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVN------------VR  150 (247)
T ss_dssp             CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCC------------CT
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCC------------CC
Confidence            399999999975421        234567899999999988873    446 79999999854321            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       151 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  193 (247)
T 2jah_A          151 NAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELR  193 (247)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGG
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcch
Confidence            35789999998887654       3599999999999998763

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.92  E-value=4.5e-25  Score=184.83  Aligned_cols=163  Identities=19%  Similarity=0.209  Sum_probs=128.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.++++.    
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS-ESEIIEAFARLDEQ  100 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999987655432   2234678999999999 7777766641    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||||+...        .+|+..+++|+.|+.++++++    ++.+.++||++||...+.            +
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~------------~  168 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL------------A  168 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------B
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC------------C
Confidence              49999999997542        234566899999999997776    344667999999975432            1


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ......|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       169 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~  212 (271)
T 4ibo_A          169 RATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDM  212 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcc
Confidence            2235789999999987764       368999999999999875

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.92  E-value=3.4e-25  Score=184.88  Aligned_cols=163  Identities=16%  Similarity=0.157  Sum_probs=127.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      .+++|+++||||+++||++++++|+++|++|++.+|+.+.+++...+...++..+++|++| .+++++.++.      ++
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~i  104 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSAN-LAELDRLYEKVKAEAGRI  104 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCE
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCC
Confidence            3679999999999999999999999999999999999888766554445678899999999 6666655432      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      |++|||||....        ++|+..+++|+.|++++++++...  .-+++|++||......            ......
T Consensus       105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~------------~~~~~~  172 (273)
T 4fgs_A          105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTG------------TPAFSV  172 (273)
T ss_dssp             EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSC------------CTTCHH
T ss_pred             CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccC------------CCCchH
Confidence            999999997542        246667899999999999988432  1258999999854211            123478


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |..+|++...+.+       ++||++++|.||.+.+++.
T Consensus       173 Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~  211 (273)
T 4fgs_A          173 YAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGL  211 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhH
Confidence            9999999987765       3689999999999999864

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.92  E-value=3.9e-24  Score=176.51  Aligned_cols=161  Identities=17%  Similarity=0.218  Sum_probs=125.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++|+++||||+||||++++++|+++|++|++++|+. +..++   .+.....++.++++|++| .++++++++.      
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVAD-ADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            579999999999999999999999999999988754 33332   122234678999999999 7777666541      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||+....        +|+..+++|+.|+.++++++    ++.+.++||++||...+..            ..
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~  149 (246)
T 3osu_A           82 SLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVG------------NP  149 (246)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC------------CT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCC------------CC
Confidence            399999999975422        24456899999999999988    5566789999999865422            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|++.+.+.+       +.|+++++++||.+.++..
T Consensus       150 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~  192 (246)
T 3osu_A          150 GQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMT  192 (246)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcc
Confidence            35789999999887764       3689999999999999864

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.92  E-value=1e-24  Score=181.40  Aligned_cols=162  Identities=17%  Similarity=0.214  Sum_probs=127.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc---C--CCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D--NPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~--~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+++..++....   .  ..++.++.+|++| .+++.+++.     
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE-PGDIDRLFEKARDL   83 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-HHHHHHHHHHHHHh
Confidence            5689999999999999999999999999999999998765432211   1  2378999999999 888887776     


Q ss_pred             -CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          134 -DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       + +|+||||||+...        .+|+..+++|+.++.++++++    ++.+.++||++||...+..            
T Consensus        84 ~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------  150 (260)
T 2z1n_A           84 GG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRP------------  150 (260)
T ss_dssp             TC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred             cC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCC------------
Confidence             6 9999999997542        134556789999997776665    4567789999999865432            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ......|..+|++.+.+.+       +.|+++++|+||++.++...
T Consensus       151 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~  196 (260)
T 2z1n_A          151 WQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVR  196 (260)
T ss_dssp             CTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhh
Confidence            1235789999999887664       35899999999999988643

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.92  E-value=5.6e-25  Score=188.73  Aligned_cols=162  Identities=21%  Similarity=0.300  Sum_probs=121.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch-----hhhh---ccccCCCCeEEEEeeCCCChHHHHHHHc--
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-----KAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIG--  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-----~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--  133 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+..     ..+.   .......++.++.+|++| .+++.++++  
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd-~~~v~~~~~~~   81 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS-QVSVDRAIDQI   81 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHH
Confidence            45799999999999999999999999999999888732     1121   111124579999999999 777776665  


Q ss_pred             -----CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCc
Q 025456          134 -----DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       134 -----~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                           + +|+||||||+...        .+++..+++|+.|+.++++++    ++.+.++||++||...+...       
T Consensus        82 ~~~~g~-iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~-------  153 (324)
T 3u9l_A           82 IGEDGR-IDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGT-------  153 (324)
T ss_dssp             HHHHSC-CSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred             HHHcCC-CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCC-------
Confidence                 5 9999999997532        234456799999999999988    66677899999998654211       


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                          ......|..+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       154 ----~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~  198 (324)
T 3u9l_A          154 ----PPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTN  198 (324)
T ss_dssp             ----CSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC-----
T ss_pred             ----CCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCch
Confidence                1124779999999987764       2589999999999987653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.92  E-value=1.6e-24  Score=178.28  Aligned_cols=161  Identities=16%  Similarity=0.189  Sum_probs=127.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi  140 (252)
                      ++++++++||||+||||++++++|+++|++|++++|+.++.++..... .+++++.+|++| .+++.+++..  ++|+||
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~-~~~~~~~~~~~~~id~vi   81 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-PGIEPVCVDLGD-WEATERALGSVGPVDLLV   81 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-TTCEEEECCTTC-HHHHHHHHTTCCCCCEEE
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-CCCCEEEEeCCC-HHHHHHHHHHcCCCCEEE
Confidence            356899999999999999999999999999999999987655433211 357788999999 8888888863  489999


Q ss_pred             EcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cC-CCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||||.....        +++..+++|+.++.++++++.+    .+ .++||++||...+..            ......|
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~~~~Y  149 (244)
T 3d3w_A           82 NNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA------------VTNHSVY  149 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------CTTBHHH
T ss_pred             ECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccC------------CCCCchH
Confidence            999975421        2345678999999998888743    35 579999999865421            1235789


Q ss_pred             HHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      +.+|++.|.+++.       .|+++++++||.++++.
T Consensus       150 ~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~  186 (244)
T 3d3w_A          150 CSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSM  186 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccc
Confidence            9999999987642       58999999999999875

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.92  E-value=1.8e-24  Score=178.48  Aligned_cols=159  Identities=21%  Similarity=0.185  Sum_probs=124.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc----ccCCCCeEEEEeeCCCChHHHHHHHc-------C
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----SKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~  134 (252)
                      +|+++||||+|+||++++++|+++|++|++++|+.+..++..    .....++.++.+|++| .+++.+++.       +
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVAD-EGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence            689999999999999999999999999999999976654322    1123568999999999 777776665       5


Q ss_pred             CCcEEEEcCCCCCCC-----------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 DSEAVVCATGFQPGW-----------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~-----------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                       +|+||||||.....           +++..+++|+.++.++++.+    ++.+.++||++||...+...          
T Consensus        81 -id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~----------  149 (250)
T 2cfc_A           81 -IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAF----------  149 (250)
T ss_dssp             -CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred             -CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC----------
Confidence             99999999975422           23345789999987776665    45577899999998654221          


Q ss_pred             ccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                        .....|+.+|.+.+.+.+.       .|+++++++||.++|+..
T Consensus       150 --~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~  193 (250)
T 2cfc_A          150 --PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMT  193 (250)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTT
T ss_pred             --CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCcc
Confidence              2357899999999877642       489999999999999864

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.92  E-value=5.5e-25  Score=206.68  Aligned_cols=173  Identities=18%  Similarity=0.224  Sum_probs=134.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh---ccc-cCCCCeEEEEeeCCCChHHHHHHHc--CCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLS-KDNPSLQIVKADVTEGSAKLSEAIG--DDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~  136 (252)
                      .+++|+|+||||+||||++|+++|+++|++|++++|+......   .+. ....+++++.+|++| .+++.+++.  + +
T Consensus         8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~-~   85 (699)
T 1z45_A            8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD-RKGLEKVFKEYK-I   85 (699)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTC-HHHHHHHHHHSC-C
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCC-HHHHHHHHHhCC-C
Confidence            3457999999999999999999999999999999987543211   010 013568899999999 888988887  6 9


Q ss_pred             cEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCC----CCCCcchhccchhhHHH
Q 025456          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG----QILNPAYIFLNVFGLTL  208 (252)
Q Consensus       137 d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~----~~~~~~~~~~~~~~~y~  208 (252)
                      |+||||||....    .++.+.+++|+.++.+++++|++.++++||++||.++|+....    .+..+. .+..+...|+
T Consensus        86 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~-~~~~p~~~Y~  164 (699)
T 1z45_A           86 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-CPLGPTNPYG  164 (699)
T ss_dssp             CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-SCCCCCSHHH
T ss_pred             CEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCcccc-CCCCCCChHH
Confidence            999999997541    1334567899999999999999999999999999999875321    122222 2345567899


Q ss_pred             HHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          209 IAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       209 ~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                      .+|+++|++++.      .+++++++||++++|+..
T Consensus       165 ~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~  200 (699)
T 1z45_A          165 HTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHP  200 (699)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCT
T ss_pred             HHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCc
Confidence            999999998764      589999999999999753

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.92  E-value=4.3e-24  Score=176.69  Aligned_cols=156  Identities=17%  Similarity=0.207  Sum_probs=120.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~  136 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+.     . . .++.++.+|++| .+++.++++      +++
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-----~-~-~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~i   75 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-----E-Q-YPFATEVMDVAD-AAQVAQVCQRLLAETERL   75 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-----S-C-CSSEEEECCTTC-HHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-----h-c-CCceEEEcCCCC-HHHHHHHHHHHHHHcCCC
Confidence            3568999999999999999999999999999999998652     1 1 238889999999 777776664      139


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||.....        +++..+++|+.++.++++++    ++.+.++||++||...+..            ....
T Consensus        76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~~  143 (250)
T 2fwm_X           76 DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTP------------RIGM  143 (250)
T ss_dssp             CEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC------------CTTC
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC------------CCCC
Confidence            9999999975421        34456789999999998887    5566789999999865421            1235


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..|+.+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       144 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  184 (250)
T 2fwm_X          144 SAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQ  184 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----
T ss_pred             chHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccc
Confidence            789999999987764       2589999999999998863

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.92  E-value=1.5e-24  Score=178.99  Aligned_cols=159  Identities=16%  Similarity=0.145  Sum_probs=126.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHH---cCCCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI---GDDSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~---~~~~d~vi  140 (252)
                      +++|+++||||+||||++++++|+++|++|++++|++++.++.. .. .++.++.+|++| .+++++++   ++ +|+||
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~-~~~~~~~~D~~~-~~~~~~~~~~~~~-id~lv   79 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY-PGIQTRVLDVTK-KKQIDQFANEVER-LDVLF   79 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS-TTEEEEECCTTC-HHHHHHHHHHCSC-CSEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc-cCceEEEeeCCC-HHHHHHHHHHhCC-CCEEE
Confidence            46899999999999999999999999999999999987665443 12 378999999999 77777654   34 99999


Q ss_pred             EcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHH
Q 025456          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (252)
Q Consensus       141 ~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~  208 (252)
                      ||||....        .+++..+++|+.++.++++++.    +.+.++||++||...+...           ......|+
T Consensus        80 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~~~~~Y~  148 (246)
T 2ag5_A           80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG-----------VVNRCVYS  148 (246)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC-----------CTTBHHHH
T ss_pred             ECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC-----------CCCCccHH
Confidence            99997542        1344567899999999988873    4566899999998643221           01357899


Q ss_pred             HHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          209 IAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       209 ~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      .+|++.+.+.+.       .|+++++|+||+++|+.
T Consensus       149 ~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  184 (246)
T 2ag5_A          149 TTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPS  184 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcc
Confidence            999999877652       48999999999999874

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.92  E-value=4.1e-25  Score=200.42  Aligned_cols=172  Identities=17%  Similarity=0.156  Sum_probs=130.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh---h---c---------cccCCCCeEEEEeeCCCChHHHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---T---T---------LSKDNPSLQIVKADVTEGSAKLS  129 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~---~---------~~~~~~~~~~i~~Dl~d~~~~~~  129 (252)
                      .+++|+|||||||||++|+++|+++|++|++++|+.+...   .   .         ......+++++.+|++| .+.+.
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~  227 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFEC-MDDVV  227 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTB-CSSCC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcc-cccCC
Confidence            4689999999999999999999999999999999876321   0   0         00123689999999999 55565


Q ss_pred             HHHcCCCcEEEEcCCCCC-CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccC-----CCCCCCcchh--cc
Q 025456          130 EAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA-----MGQILNPAYI--FL  201 (252)
Q Consensus       130 ~~~~~~~d~vi~~ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~-----~~~~~~~~~~--~~  201 (252)
                       ...+ +|+|||||+... ..++...+++|+.++.+++++|++ +.++|||+||.++ |..     ...+..+...  +.
T Consensus       228 -~~~~-~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~~~  303 (508)
T 4f6l_B          228 -LPEN-MDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQ  303 (508)
T ss_dssp             -CSSC-CSEEEECCCC--------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECTTCSCSSB
T ss_pred             -CccC-CCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCcccccccccccc
Confidence             5566 999999999754 345667789999999999999998 6689999999988 332     1122222221  23


Q ss_pred             chhhHHHHHHHHHHHHHHH---cCCcEEEEeCCcccCCCCCCc
Q 025456          202 NVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTGN  241 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~---~gi~~~~lrPg~i~~~~~~~~  241 (252)
                      .+.+.|+.+|+.+|++++.   .|++++++|||+++|+...+.
T Consensus       304 ~~~~~Y~~sK~~~E~~~~~~~~~gi~~~ilRp~~v~G~~~~~~  346 (508)
T 4f6l_B          304 LLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRW  346 (508)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHTTCEEEEEEECCEESCSSSCC
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHcCCCEEEEecceeccCCCCCc
Confidence            4678899999999998865   799999999999999976553

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.92  E-value=1.1e-24  Score=182.62  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=122.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhhcccc---C-CCCeEEEEeeCCCCh----HHHHHHHc-
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLSK---D-NPSLQIVKADVTEGS----AKLSEAIG-  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~~~~~---~-~~~~~~i~~Dl~d~~----~~~~~~~~-  133 (252)
                      +++|+++||||+||||++++++|+++|++|++++| +.+..++....   . ..++.++.+|++| .    +++.+++. 
T Consensus         9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   87 (276)
T 1mxh_A            9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL-SSSLLDCCEDIIDC   87 (276)
T ss_dssp             --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-STTHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC-ccccHHHHHHHHHH
Confidence            56899999999999999999999999999999999 76655432211   1 3578999999999 6    66666554 


Q ss_pred             ------CCCcEEEEcCCCCCC-------------------CCCCCcceehHHHHHHHHHHHHh---cCC------CEEEE
Q 025456          134 ------DDSEAVVCATGFQPG-------------------WDLFAPWKVDNFGTVNLVEACRK---RGV------NRFIL  179 (252)
Q Consensus       134 ------~~~d~vi~~ag~~~~-------------------~~~~~~~~~n~~g~~~ll~~~~~---~~~------~~~v~  179 (252)
                            + +|+||||||+...                   .+++..+++|+.++.++++++..   .+.      ++||+
T Consensus        88 ~~~~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~  166 (276)
T 1mxh_A           88 SFRAFGR-CDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN  166 (276)
T ss_dssp             HHHHHSC-CCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred             HHHhcCC-CCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence                  5 9999999997532                   22334678999999999999865   343      69999


Q ss_pred             EccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          180 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       180 ~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                      +||...+..            ......|+.+|++.+.+.+       ..|+++++|+||.+.++
T Consensus       167 isS~~~~~~------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~  218 (276)
T 1mxh_A          167 LCDAMTDLP------------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP  218 (276)
T ss_dssp             ECCGGGGSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC
T ss_pred             ECchhhcCC------------CCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC
Confidence            999865422            1235789999999987764       24899999999999998

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.92  E-value=3.3e-24  Score=177.34  Aligned_cols=162  Identities=19%  Similarity=0.227  Sum_probs=127.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .++++++++||||+||||++++++|+++|++|++++|+.+..+...   .....++.++.+|++| .+++.+++.     
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   85 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISK   85 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHh
Confidence            3457899999999999999999999999999999999976654322   1134578899999999 777777665     


Q ss_pred             --CCCcEEEEcCCCCCCC-------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          134 --DDSEAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~-------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        + +|+||||||.....       +++..+++|+.++.++++++.    +.+.++||++||...+..            
T Consensus        86 ~~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------  152 (255)
T 1fmc_A           86 LGK-VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK------------  152 (255)
T ss_dssp             HSS-CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC------------
T ss_pred             cCC-CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCC------------
Confidence              5 99999999975431       233557899999999988874    556789999999865432            


Q ss_pred             cchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      ..+...|+.+|++.|.+.+.       .|+++++++||.++++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~  196 (255)
T 1fmc_A          153 NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA  196 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHH
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchh
Confidence            12357899999999877642       48999999999999864

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.92  E-value=7.2e-25  Score=182.34  Aligned_cols=162  Identities=20%  Similarity=0.153  Sum_probs=124.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhhcccc---C-CCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSK---D-NPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~---~-~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+. .++....   . ..++.++.+|++| .+++.+++..    
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC-HHHHHHHHHHHHHh
Confidence            458999999999999999999999999999999998766 4432211   1 3568899999999 7777666541    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||||+...        .+++..+++|+.|+.++++++    ++.+.++||++||...+..            
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------  148 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVA------------  148 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcC------------
Confidence              39999999997542        134456789999999988887    3456679999999865421            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       149 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  193 (260)
T 1x1t_A          149 SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLV  193 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchH
Confidence            1234789999999987764       2489999999999999864

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.92  E-value=9.4e-25  Score=183.80  Aligned_cols=163  Identities=19%  Similarity=0.174  Sum_probs=124.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhc---ccc-CCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTT---LSK-DNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~---~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+ .+..+..   +.. ...++.++.+|++| .+++.+++..   
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  100 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK-PSEIADMMAMVAD  100 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC-HHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC-HHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999994 3333321   111 24578999999999 7777766541   


Q ss_pred             ---CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 ---DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                         ++|+||||||+....        +|+..+++|+.|+.++++++    ++.+.++||++||...+..           
T Consensus       101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  169 (281)
T 3v2h_A          101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVA-----------  169 (281)
T ss_dssp             HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----------
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccC-----------
Confidence               399999999975422        34456899999999999887    5556679999999854321           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                       ......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       170 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~  214 (281)
T 3v2h_A          170 -SPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLV  214 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcch
Confidence             1234789999999987764       3589999999999999864

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.92  E-value=2.3e-24  Score=181.55  Aligned_cols=166  Identities=18%  Similarity=0.197  Sum_probs=128.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++++|++| .+++.+++..     
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD-ELQMRNAVRDLVLKF  103 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            346899999999999999999999999999999999987654422   2234678999999999 7666665541     


Q ss_pred             -CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 -DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 -~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       ++|+||||||+...         .+|+..+++|+.|+.++++++    ++.+.++||++||...+...          +
T Consensus       104 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~----------~  173 (283)
T 3v8b_A          104 GHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF----------T  173 (283)
T ss_dssp             SCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC----------C
T ss_pred             CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC----------C
Confidence             49999999997432         124456899999999999887    55666899999998543210          1


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ......|+.+|++.+.+.+       ..|+++++|+||.+.++...
T Consensus       174 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~  219 (283)
T 3v8b_A          174 TPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISD  219 (283)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTC
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCccc
Confidence            1235789999999987765       25899999999999998654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.92  E-value=7.1e-25  Score=182.02  Aligned_cols=162  Identities=15%  Similarity=0.170  Sum_probs=128.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.+.+..      ++|
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id   84 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIAD-LNEIAVLGAAAGQTLGAID   84 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence            468999999999999999999999999999999999877655433233578999999999 7666654431      399


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      +||||||+...        .+++..+++|+.|+.++++++...  ..++||++||...+..            ......|
T Consensus        85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~~~Y  152 (255)
T 4eso_A           85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGG------------HPGMSVY  152 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSB------------CTTBHHH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCC------------CCCchHH
Confidence            99999997642        234566899999999999999653  2258999999865432            1235789


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +.+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       153 ~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~  190 (255)
T 4eso_A          153 SASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTK  190 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSST
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCccc
Confidence            999999987764       2589999999999999864

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.92  E-value=1.2e-24  Score=180.41  Aligned_cols=163  Identities=15%  Similarity=0.189  Sum_probs=121.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-----C
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----D  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-----~  134 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.     +
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN-EDEVTAFLNAADAHA   82 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC-HHHHHHHHHHHHhhC
Confidence            356899999999999999999999999999999999987665432   2234678999999999 777776665     2


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||+....        +++..+++|+.|+.++++++    ++.+.++||++||...+..            ..
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~  150 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRG------------GS  150 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCC------------CT
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCC------------CC
Confidence            389999999975432        24456899999999888876    4556679999999854321            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcE-EEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINY-TIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~-~~lrPg~i~~~~~  238 (252)
                      ....|+.+|++.+.+.+       ..|+++ +++.||.+.++..
T Consensus       151 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~  194 (252)
T 3h7a_A          151 GFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWV  194 (252)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--------
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhh
Confidence            35789999999987664       358999 8999999998764

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.92  E-value=1.8e-24  Score=181.01  Aligned_cols=163  Identities=19%  Similarity=0.194  Sum_probs=126.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+ .+..+.   .+.....++.++.+|++| .++++++++.    
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ-ESEVEALFAAVIER  103 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999884 333322   222234678999999999 7776666541    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||||+...        .+|+..+++|+.|+.++++++    ++.+.++||++||...+..            
T Consensus       104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------  171 (269)
T 4dmm_A          104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMG------------  171 (269)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHC------------
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC------------
Confidence              39999999997642        234566899999999998887    4456679999999864321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       172 ~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~  216 (269)
T 4dmm_A          172 NPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMT  216 (269)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCS
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccc
Confidence            1235789999998887654       3589999999999999864

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.92  E-value=4.6e-24  Score=180.60  Aligned_cols=163  Identities=23%  Similarity=0.286  Sum_probs=127.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCC-CCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDN-PSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~-~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++..   .... .++.++++|++| .+++.+++..    
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  116 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD-PGSCADAARTVVDA  116 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC-HHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999987654422   2122 578999999999 7666655431    


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||||+....        +|+..+++|+.|++++++++    ++.+.++||++||...+..           +
T Consensus       117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~-----------~  185 (293)
T 3rih_A          117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVT-----------G  185 (293)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTB-----------B
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccC-----------C
Confidence              399999999975432        24456799999999999887    4666789999999753200           1


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ......|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       186 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~  229 (293)
T 3rih_A          186 YPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEG  229 (293)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcc
Confidence            1235789999999987765       358999999999999864

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.92  E-value=1.2e-24  Score=182.93  Aligned_cols=162  Identities=18%  Similarity=0.224  Sum_probs=124.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .+++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++..     
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS-TDEVHAAVAAAVERF   99 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            346899999999999999999999999999999999987655422   2234679999999999 7766665541     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh------cCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK------RGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~------~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                       ++|+||||||.....        +++..+++|+.|+.++++++..      .+.++||++||...+..           
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~-----------  168 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQG-----------  168 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSC-----------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccC-----------
Confidence             499999999975422        2445678999999999998643      55679999999854321           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       ......|+.+|++.+.+.+       +.|+++++|+||.+.++.
T Consensus       169 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~  212 (279)
T 3sju_A          169 -VMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPM  212 (279)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHH
T ss_pred             -CCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchH
Confidence             1235789999999887764       368999999999998864

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.92  E-value=5.3e-25  Score=182.45  Aligned_cols=161  Identities=16%  Similarity=0.177  Sum_probs=124.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++.......++.++++|++| .+++.++++.      ++
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~i   81 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSS-EADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTC-HHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            3568999999999999999999999999999999999876554332223578999999999 7666655532      38


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||+...        .+++..+++|+.++.++++++    ++.+ ++||++||...+..            ....
T Consensus        82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~------------~~~~  148 (253)
T 1hxh_A           82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLP------------IEQY  148 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSC------------CTTB
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCC------------CCCC
Confidence            999999997542        124456789999887766654    4556 89999999865422            1235


Q ss_pred             hHHHHHHHHHHHHHHH-------c--CCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIRK-------S--GINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~~-------~--gi~~~~lrPg~i~~~~  237 (252)
                      ..|..+|++.+.+.+.       .  |+++++|+||+++|+.
T Consensus       149 ~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~  190 (253)
T 1hxh_A          149 AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPM  190 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCch
Confidence            7899999999877642       3  8999999999998874

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.92  E-value=7.6e-25  Score=184.23  Aligned_cols=163  Identities=21%  Similarity=0.278  Sum_probs=126.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCC---CCeEEEEeeCCCChHHHHHHHcC--
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDN---PSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~---~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++..   ....   .++.++.+|++| .+++.++++.  
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~   86 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN-EDETARAVDAVT   86 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS-HHHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC-HHHHHHHHHHHH
Confidence            456899999999999999999999999999999999987654322   1112   268899999999 7766665542  


Q ss_pred             ----CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 ----DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                          ++|+||||||....         .+|+..+++|+.|++++++++.    +.+.++||++||...+...        
T Consensus        87 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------  158 (281)
T 3svt_A           87 AWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH--------  158 (281)
T ss_dssp             HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC--------
T ss_pred             HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC--------
Confidence                39999999997321         1245568899999999998873    3455699999998654321        


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                          .....|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       159 ----~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~  202 (281)
T 3svt_A          159 ----RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLV  202 (281)
T ss_dssp             ----TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGG
T ss_pred             ----CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcch
Confidence                234689999999998765       3579999999999998753

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.92  E-value=1.4e-24  Score=180.03  Aligned_cols=164  Identities=14%  Similarity=0.174  Sum_probs=126.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh--ccccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT--TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .++++|+++||||+++||++++++|+++|++|++.+|+.+..+.  .+.....++.++.+|++| +++++++++.     
T Consensus         3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQD-DAQCRDAVAQTIATF   81 (258)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC-HHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999999998764321  122234678999999999 6665554431     


Q ss_pred             -CCcEEEEcCCCCCC-------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 -DSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 -~~d~vi~~ag~~~~-------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                       ++|++|||||+...       ++|+..+++|+.+++++.+++    ++.+ ++||++||......            ..
T Consensus        82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~------------~~  148 (258)
T 4gkb_A           82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR-GAIVNISSKTAVTG------------QG  148 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTHHHHC------------CS
T ss_pred             CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEeehhhccC------------CC
Confidence             49999999997542       235566899999998888776    3444 79999999854321            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ....|..+|++.+.+.+       ++||++++|.||.+.++...
T Consensus       149 ~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~  192 (258)
T 4gkb_A          149 NTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYR  192 (258)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHh
Confidence            34789999999987765       46999999999999998753

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.92  E-value=9.3e-25  Score=181.60  Aligned_cols=161  Identities=19%  Similarity=0.196  Sum_probs=125.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++|+++||||+||||++++++|+++|++|+++ .|+.+..++.   +.....++.++.+|++| .++++++++.      
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ-PAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            47999999999999999999999999999987 7776654432   22234679999999999 7766665542      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||.....        +|+..+++|+.|+.++++++    ++.+.++||++||...+..            ..
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~  149 (258)
T 3oid_A           82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRY------------LE  149 (258)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSB------------CT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCC------------CC
Confidence            489999999965421        24456899999999998887    4556679999999854321            23


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       150 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~  192 (258)
T 3oid_A          150 NYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDAL  192 (258)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGG
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhh
Confidence            45789999999998765       2589999999999998753

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.92  E-value=1.5e-24  Score=177.41  Aligned_cols=160  Identities=15%  Similarity=0.156  Sum_probs=117.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      ++++++||||+||||++++++|+++|++|++++|+.+..++..... .++.++.+|++| .+++.+++..      ++|+
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~   81 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL-EGALPLPGDVRE-EGDWARAVAAMEEAFGELSA   81 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-TTCEEEECCTTC-HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hhceEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            4689999999999999999999999999999999987655433212 268899999999 7766665541      3999


Q ss_pred             EEEcCCCCCCC--------CCCCcceehHHHHHHHHHH----HHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPGW--------DLFAPWKVDNFGTVNLVEA----CRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~----~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ||||||.....        +++..+++|+.++.++++.    +++.+.++||++||...+..            ......
T Consensus        82 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------------~~~~~~  149 (234)
T 2ehd_A           82 LVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNP------------FKGGAA  149 (234)
T ss_dssp             EEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSC------------CTTCHH
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCC------------CCCCch
Confidence            99999975421        2345678999998765554    46667789999999864421            123578


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |+.+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       150 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  188 (234)
T 2ehd_A          150 YNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFA  188 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-------
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcc
Confidence            9999998887653       3589999999999988754

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.91  E-value=1.4e-24  Score=180.20  Aligned_cols=161  Identities=16%  Similarity=0.111  Sum_probs=123.5

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-----CCC
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-----DDS  136 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-----~~~  136 (252)
                      +++++|+++||||+|+||++++++|+++|++|++++|+.+...+.+   ..++.++++|++| .+++.++++     +++
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~D~~~-~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVADL---GDRARFAAADVTD-EAAVASALDLAETMGTL   80 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHT---CTTEEEEECCTTC-HHHHHHHHHHHHHHSCE
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHHhc---CCceEEEECCCCC-HHHHHHHHHHHHHhCCC
Confidence            4467899999999999999999999999999999999766544333   3579999999999 777776664     139


Q ss_pred             cEEEEcCCCCC------------CCCCCCcceehHHHHHHHHHHHHh------------cCCCEEEEEccceeeccCCCC
Q 025456          137 EAVVCATGFQP------------GWDLFAPWKVDNFGTVNLVEACRK------------RGVNRFILISSILVNGAAMGQ  192 (252)
Q Consensus       137 d~vi~~ag~~~------------~~~~~~~~~~n~~g~~~ll~~~~~------------~~~~~~v~~SS~~v~~~~~~~  192 (252)
                      |+||||||+..            ..+++..+++|+.++.++++++..            .+.++||++||...+..    
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----  156 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDG----  156 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CC----
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCC----
Confidence            99999999642            223567789999999999998853            23458999999865421    


Q ss_pred             CCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                              ...+..|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       157 --------~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~  201 (257)
T 3tl3_A          157 --------QIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLL  201 (257)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC
T ss_pred             --------CCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhh
Confidence                    2245789999999887664       3589999999999999864

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.91  E-value=1.8e-24  Score=180.15  Aligned_cols=162  Identities=18%  Similarity=0.168  Sum_probs=123.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++++++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++..      
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH-SDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHhcC
Confidence            56899999999999999999999999999999999987655432   2234678999999999 7766665532      


Q ss_pred             CCcEEEEcCCCCC-C--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQP-G--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~-~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||||... .        .+++..+++|+.|+.++++++    ++.+.++||++||...+..            .
T Consensus       106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~  173 (262)
T 3rkr_A          106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNP------------V  173 (262)
T ss_dssp             CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCC------------C
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCC------------C
Confidence            4999999999732 1        124456889999999988886    4456689999999865421            2


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       174 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~  217 (262)
T 3rkr_A          174 ADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFG  217 (262)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcc
Confidence            235789999999887654       3689999999999998764

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=2.6e-24  Score=177.56  Aligned_cols=159  Identities=17%  Similarity=0.197  Sum_probs=124.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+.++.++.....  ++.++.+|++| .+++.+++..      ++|
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id   79 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV--GAHPVVMDVAD-PASVERGFAEALAHLGRLD   79 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--TCEEEECCTTC-HHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999999999999999999999987665443312  38889999999 7766665542      499


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||||+....        +++..+++|+.++.++++++.    +.+.++||++||...++.             ....
T Consensus        80 ~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-------------~~~~  146 (245)
T 1uls_A           80 GVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN-------------LGQA  146 (245)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC-------------TTCH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCC-------------CCch
Confidence            999999975421        244567899999999988874    345679999999862211             1246


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|..+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       147 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  186 (245)
T 1uls_A          147 NYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMT  186 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcch
Confidence            79999998887654       3589999999999998864

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.91  E-value=1.4e-24  Score=179.42  Aligned_cols=159  Identities=21%  Similarity=0.206  Sum_probs=123.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEAVV  140 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~vi  140 (252)
                      |+++||||+||||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.+++..      ++|+||
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~lv   79 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWCNIDILV   79 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHTSCTTTCCCCEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCCEEE
Confidence            589999999999999999999999999999999876654332223478999999999 8888877652      499999


Q ss_pred             EcCCCCC-C--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGFQP-G--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~~~-~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||||+.. .        .+++..+++|+.|+.++++++.    +.+.++||++||...+..            ......|
T Consensus        80 nnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~~~~Y  147 (248)
T 3asu_A           80 NNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP------------YAGGNVY  147 (248)
T ss_dssp             ECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC------------CTTCHHH
T ss_pred             ECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccC------------CCCCchH
Confidence            9999752 1        1344568999999998888874    456689999999854321            1235789


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCccc-CCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLR-NEPP  238 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~-~~~~  238 (252)
                      +.+|++.+.+.+       ..|+++++|+||.+. ++..
T Consensus       148 ~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~  186 (248)
T 3asu_A          148 GATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFS  186 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC----
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcch
Confidence            999999998764       248999999999999 6653

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.91  E-value=2.3e-24  Score=177.84  Aligned_cols=162  Identities=19%  Similarity=0.196  Sum_probs=124.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++| +.++.++.   +.....++.++.+|++| .+++.++++.     
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN-AEDVTNMVKQTVDVF   80 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            45899999999999999999999999999999999 66554332   11124578899999999 7777666541     


Q ss_pred             -CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||||....        .+++..+++|+.++.++++++    ++.+.++||++||...+..            .
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~  148 (246)
T 2uvd_A           81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG------------N  148 (246)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC------------C
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCC------------C
Confidence             39999999997542        134456889999977776665    4556789999999854321            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|..+|.+.+.+.+       ..|+++++|+||.+.++..
T Consensus       149 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  192 (246)
T 2uvd_A          149 PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMT  192 (246)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCS
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcch
Confidence            234779999998887654       3589999999999988753

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.91  E-value=9.7e-25  Score=179.05  Aligned_cols=160  Identities=16%  Similarity=0.143  Sum_probs=123.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCcE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d~  138 (252)
                      ++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++.+|++| .++++++++.      ++|+
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id~   80 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAH-HEDVDVAFAAAVEWGGLPEL   80 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTS-HHHHHHHHHHHHHHHCSCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHhcCCCcE
Confidence            57899999999999999999999999999999999877654332222368999999999 7766665541      3999


Q ss_pred             EEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       139 vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      ||||||....        .+++..+++|+.|+.++++++.    +.+ ++||++||...+..            ......
T Consensus        81 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~~------------~~~~~~  147 (235)
T 3l6e_A           81 VLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSAAQVG------------KANESL  147 (235)
T ss_dssp             EEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECCSS------------CSSHHH
T ss_pred             EEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEeCHHhcCC------------CCCCcH
Confidence            9999997542        2344568999999999988873    333 39999999865422            123578


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       148 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  186 (235)
T 3l6e_A          148 YCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFW  186 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcch
Confidence            9999999987765       3589999999999998864

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.91  E-value=1.7e-23  Score=173.52  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=127.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..+...   .....++.++.+|++| .+++.++++      
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN-TESVQNAVRSVHEQE   88 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHc
Confidence            456899999999999999999999999999999999876554322   1124579999999999 777776664      


Q ss_pred             CCCcEEEEcCCCCC-CC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          134 DDSEAVVCATGFQP-GW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       134 ~~~d~vi~~ag~~~-~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      +++|+||||||... ..        +++..+++|+.++.++++++.    +.+.++||++||...+...          +
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~  158 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN----------R  158 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------S
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC----------C
Confidence            13999999999654 11        123457899999999988874    3466799999998543211          1


Q ss_pred             cchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..+...|+.+|++.|.+++.       .|+++++++||.++++...
T Consensus       159 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~  204 (260)
T 3awd_A          159 PQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTR  204 (260)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTH
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhh
Confidence            12237899999999887652       6899999999999998653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.91  E-value=1.8e-24  Score=181.69  Aligned_cols=161  Identities=18%  Similarity=0.189  Sum_probs=125.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+++..++..   .....++.++.+|++| .+++.+++..      
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYG   98 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            56899999999999999999999999999999999987654322   1124568999999999 7777666541      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc------CCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR------GVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~------~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      ++|+||||||+....        +++..+++|+.|+.++++++...      +.++||++||...+..            
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------  166 (277)
T 2rhc_B           99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQG------------  166 (277)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSC------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccC------------
Confidence            399999999975421        24456789999999999986543      5679999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      ......|+.+|++.+.+.+.       .|+++++|+||.+.++.
T Consensus       167 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  210 (277)
T 2rhc_B          167 VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM  210 (277)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCch
Confidence            12347899999999877642       48999999999998874

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.91  E-value=1.5e-24  Score=188.16  Aligned_cols=168  Identities=14%  Similarity=0.148  Sum_probs=129.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-----CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-----FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-----~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~  138 (252)
                      +|+|+||||+||||++|+++|+++|     ++|++++|+++...  .  ...+++++.+|++| .+++.+++.+  ++|+
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~--~--~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~d~   75 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW--H--EDNPINYVQCDISD-PDDSQAKLSPLTDVTH   75 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC--C--CSSCCEEEECCTTS-HHHHHHHHTTCTTCCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc--c--ccCceEEEEeecCC-HHHHHHHHhcCCCCCE
Confidence            4789999999999999999999999     99999999875432  1  23578999999999 8889888876  3899


Q ss_pred             EEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhc--CCCEEE-------EEccceeeccCC--CCCCCcchhccchhhHH
Q 025456          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR--GVNRFI-------LISSILVNGAAM--GQILNPAYIFLNVFGLT  207 (252)
Q Consensus       139 vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v-------~~SS~~v~~~~~--~~~~~~~~~~~~~~~~y  207 (252)
                      |||+||... .++...+++|+.++.+++++|++.  ++++||       |+||..+||...  ..+..+..........|
T Consensus        76 vih~a~~~~-~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~~~~~y  154 (364)
T 2v6g_A           76 VFYVTWANR-STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFY  154 (364)
T ss_dssp             EEECCCCCC-SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSCCCSSCCHH
T ss_pred             EEECCCCCc-chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccccCCccchhh
Confidence            999999764 345567899999999999999988  788998       799999998642  23333332211113455


Q ss_pred             HHHHHHHHHHHHHcC-CcEEEEeCCcccCCCCC
Q 025456          208 LIAKLQAEQYIRKSG-INYTIIRPGGLRNEPPT  239 (252)
Q Consensus       208 ~~sK~~~e~~~~~~g-i~~~~lrPg~i~~~~~~  239 (252)
                      ..++..++++.++++ ++++++||++++|+...
T Consensus       155 ~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~  187 (364)
T 2v6g_A          155 YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPY  187 (364)
T ss_dssp             HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTT
T ss_pred             HHHHHHHHHHhhcCCCceEEEECCCceeCCCCC
Confidence            444444444444466 99999999999998654

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.91  E-value=2.4e-24  Score=180.53  Aligned_cols=163  Identities=17%  Similarity=0.147  Sum_probs=125.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh--hccccCCCCeEEEEeeCCCChHHHHHHHc-----C
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--TTLSKDNPSLQIVKADVTEGSAKLSEAIG-----D  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-----~  134 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+....+  +.+.....++.++.+|++| .+++.++..     +
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLAD-LEGAANVAEELAATR  105 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHhcC
Confidence            4567899999999999999999999999999999997643221  1222234678999999999 666655432     1


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||+....        +|+..+++|+.|+.++++++    ++.+.++||++||...+..            ..
T Consensus       106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~------------~~  173 (273)
T 3uf0_A          106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQG------------GR  173 (273)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------CS
T ss_pred             CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCC------------CC
Confidence            499999999976432        34456899999999998877    4556679999999865421            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       174 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~  215 (273)
T 3uf0_A          174 NVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTAN  215 (273)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCc
Confidence            35789999999987764       268999999999999875

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.91  E-value=1.6e-24  Score=179.81  Aligned_cols=160  Identities=17%  Similarity=0.118  Sum_probs=123.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hhccccCCCCeEEEEeeCCCChHHHHHHHc-------CC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~~  135 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+.. .+.+.....++.++.+|++| .+++.+++.       + 
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~-   79 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSD-VAQIEALFALAEREFGG-   79 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTS-HHHHHHHHHHHHHHHSS-
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCC-HHHHHHHHHHHHHHcCC-
Confidence            4589999999999999999999999999999999987521 12222224568889999999 777777665       5 


Q ss_pred             CcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||||+...        .+++..+++|+.++.++++++    ++.+.++||++||...+...            ..
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~  147 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGS------------TG  147 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC------------TT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCC------------CC
Confidence            9999999997542        134456789999877766655    56677899999998654321            23


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|..+|.+.+.+.+       ..|+++++|+||.+.|+.
T Consensus       148 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  188 (255)
T 2q2v_A          148 KAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPL  188 (255)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcc
Confidence            4789999999987765       258999999999999875

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.91  E-value=8.9e-25  Score=180.89  Aligned_cols=161  Identities=19%  Similarity=0.144  Sum_probs=112.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++++|+++||||+|+||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++..    
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD-PESAKAMADRTLAE   83 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999987665432   2234678999999999 7777666541    


Q ss_pred             --CCcEEEEcCCCCC-----------CCCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 --DSEAVVCATGFQP-----------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 --~~d~vi~~ag~~~-----------~~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                        ++|+||||||+..           ..+++..+++|+.++.++++++    ++.+.++||++||...|.          
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------  153 (253)
T 3qiv_A           84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL----------  153 (253)
T ss_dssp             HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred             cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC----------
Confidence              3999999999732           1124456899999976666655    556667999999987651          


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                           ....|+.+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       154 -----~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  196 (253)
T 3qiv_A          154 -----YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEAN  196 (253)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC--------
T ss_pred             -----CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccch
Confidence                 13558899998887664       2489999999999999754

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.91  E-value=2.7e-24  Score=178.84  Aligned_cols=163  Identities=21%  Similarity=0.179  Sum_probs=124.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc---CC-------CCeEEEEeeCCCChHHHHHHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DN-------PSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~~-------~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      ++++++++||||+||||++++++|+++|++|++++|+.+..++....   ..       .++.++.+|++| .+++.+++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~   82 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSE-ARAARCLL   82 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTS-HHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCC-HHHHHHHH
Confidence            35689999999999999999999999999999999998765433211   11       468899999999 77666665


Q ss_pred             cC------CC-cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHh----cC-CCEEEEEccceeeccCCCC
Q 025456          133 GD------DS-EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQ  192 (252)
Q Consensus       133 ~~------~~-d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~----~~-~~~~v~~SS~~v~~~~~~~  192 (252)
                      .+      ++ |+||||||....        .+++..+++|+.|+.++++++.+    .+ .++||++||...+..    
T Consensus        83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~----  158 (264)
T 2pd6_A           83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVG----  158 (264)
T ss_dssp             HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHC----
T ss_pred             HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccC----
Confidence            43      26 999999997542        13445678999999999998754    34 569999999754321    


Q ss_pred             CCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                              ......|+.+|.+.+.+.+       +.|+++++++||.++|+..
T Consensus       159 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  203 (264)
T 2pd6_A          159 --------NVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMT  203 (264)
T ss_dssp             --------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-
T ss_pred             --------CCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccch
Confidence                    1235789999999887654       2689999999999999864

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.91  E-value=6.7e-24  Score=175.43  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=124.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCe-EEEEeeCCCChHHHHHHH------cCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSL-QIVKADVTEGSAKLSEAI------GDD  135 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~i~~Dl~d~~~~~~~~~------~~~  135 (252)
                      ++++++++||||+||||++++++|+++|++|++++|++++.++.......++ .++.+|++| .+++.+++      .+ 
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~-   85 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTD-AEAMTAAAAEAEAVAP-   85 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC-HHHHHHHHHHHHHHSC-
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCC-HHHHHHHHHHHHhhCC-
Confidence            4568999999999999999999999999999999999876544322112356 889999999 77777665      45 


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||||.....        +++..+++|+.++.++++++    ++.+.++||++||...+....          ..+
T Consensus        86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------~~~  155 (254)
T 2wsb_A           86 VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNR----------PQF  155 (254)
T ss_dssp             CCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS----------SSC
T ss_pred             CcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCC----------CCc
Confidence            99999999975421        13355789999977777765    456678999999986543211          122


Q ss_pred             hhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|++.+.+.+.       .|+++++++||.++|+.
T Consensus       156 ~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~  196 (254)
T 2wsb_A          156 ASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEM  196 (254)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchh
Confidence            37899999999877642       48999999999999874

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.91  E-value=2.5e-24  Score=179.30  Aligned_cols=160  Identities=15%  Similarity=0.128  Sum_probs=124.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-------  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-------  133 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.       
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence            56899999999999999999999999999999999976654322   2224578999999999 766665544       


Q ss_pred             CCCcEEEEcCCCC-CC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          134 DDSEAVVCATGFQ-PG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       134 ~~~d~vi~~ag~~-~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      + +|+||||||.. ..        .+|+..+++|+.++.++++++.    +.+.++||++||...+...           
T Consensus        84 ~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  151 (262)
T 1zem_A           84 K-IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP-----------  151 (262)
T ss_dssp             C-CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC-----------
T ss_pred             C-CCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC-----------
Confidence            5 99999999975 21        1345567899999999888874    3456799999998654221           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       152 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~  194 (262)
T 1zem_A          152 -PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGF  194 (262)
T ss_dssp             -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSH
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcch
Confidence             224689999998887654       358999999999998874

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.91  E-value=3.5e-24  Score=179.87  Aligned_cols=166  Identities=16%  Similarity=0.205  Sum_probs=128.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++++|++| .++++++++.    
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ-PDQVRGMLDQMTGE  106 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999887654422   2234578999999999 7777766651    


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        ++|+||||||+....        +++..+++|+.|++++++++.    +.+ .++||++||...+....         
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~---------  177 (276)
T 3r1i_A          107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINI---------  177 (276)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCC---------
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCC---------
Confidence              399999999976432        244557899999999988873    333 26899999985432110         


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                       ......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       178 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~  222 (276)
T 3r1i_A          178 -PQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELV  222 (276)
T ss_dssp             -SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTT
T ss_pred             -CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcc
Confidence             1235789999999987764       2689999999999999864

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.91  E-value=3.7e-24  Score=179.96  Aligned_cols=164  Identities=20%  Similarity=0.152  Sum_probs=126.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-------------chhhhh---ccccCCCCeEEEEeeCCCChH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-------------LDKAKT---TLSKDNPSLQIVKADVTEGSA  126 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-------------~~~~~~---~~~~~~~~~~~i~~Dl~d~~~  126 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+             .+..++   .+.....++.++.+|++| .+
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~   90 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD-DA   90 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC-HH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HH
Confidence            4578999999999999999999999999999999983             333322   122234678999999999 77


Q ss_pred             HHHHHHcC------CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcC-CCEEEEEccceeec
Q 025456          127 KLSEAIGD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNG  187 (252)
Q Consensus       127 ~~~~~~~~------~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~-~~~~v~~SS~~v~~  187 (252)
                      +++++++.      ++|+||||||+...        .+++..+++|+.|+.++++++    ++.+ .++||++||...+.
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  170 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK  170 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc
Confidence            77666541      39999999997542        234456789999999998887    3333 46899999986432


Q ss_pred             cCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .            ......|+.+|++.+.+.+       ++|+++++|+||.+.++...
T Consensus       171 ~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~  217 (280)
T 3pgx_A          171 A------------TPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIE  217 (280)
T ss_dssp             C------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC
T ss_pred             C------------CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccc
Confidence            1            1235789999999987664       36899999999999998753

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.91  E-value=2.4e-24  Score=177.67  Aligned_cols=164  Identities=15%  Similarity=0.183  Sum_probs=128.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++++++..     
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISD-IESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHc
Confidence            346899999999999999999999999999999999987654322   2234679999999999 7777766542     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||||+....        +++..+++|+.++.++++++.    +.+.++||++||...+..            .
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~  148 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAG------------N  148 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC------------C
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccC------------C
Confidence             489999999976421        344567899999999888863    445579999999854422            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .....|+.+|++.+.+.+       ..|+++++++||.+.++...
T Consensus       149 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~  193 (247)
T 3lyl_A          149 PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTD  193 (247)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTT
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccch
Confidence            235789999998887664       35899999999999998643

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.91  E-value=1.1e-24  Score=182.47  Aligned_cols=162  Identities=16%  Similarity=0.125  Sum_probs=123.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++.......++.++++|++| .+++.++++.      ++|
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD  104 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTD-PDSVRALFTATVEKFGRVD  104 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            457999999999999999999999999999999999877665443333678999999999 7777766541      399


Q ss_pred             EEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcC--CCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          138 AVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRG--VNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       138 ~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      +||||||+...         .+|+..+++|+.|+.++++++    ++.+  .++||++||...+..            ..
T Consensus       105 ~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~------------~~  172 (272)
T 4dyv_A          105 VLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSP------------RP  172 (272)
T ss_dssp             EEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSC------------CT
T ss_pred             EEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCC------------CC
Confidence            99999997532         124466899999988888876    3333  469999999854321            22


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       173 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~  215 (272)
T 4dyv_A          173 YSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMA  215 (272)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC----
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhh
Confidence            35789999999987764       3589999999999999764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.91  E-value=3.6e-24  Score=178.54  Aligned_cols=161  Identities=14%  Similarity=0.261  Sum_probs=126.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .+++|+++||||+|+||++++++|+++|++|++++|+.+..++..   .....++.++++|++| .+++.++++.     
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD-DAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            356899999999999999999999999999999999987655432   2234679999999999 7777666541     


Q ss_pred             -CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 -DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 -~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       ++|+||||||....         .+++..+++|+.++.++++++.    +.+ ++||++||...+..            
T Consensus        87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~------------  153 (264)
T 3ucx_A           87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHS------------  153 (264)
T ss_dssp             SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCC------------
T ss_pred             CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccC------------
Confidence             49999999987421         2345568999999999988863    344 79999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...+..|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       154 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~  197 (264)
T 3ucx_A          154 QAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGT  197 (264)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccccc
Confidence            2235789999999987764       368999999999998864

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.91  E-value=4.3e-24  Score=177.41  Aligned_cols=160  Identities=17%  Similarity=0.170  Sum_probs=123.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      +++++++||||+||||++++++|+++|++|++++| +.+..+..   +.....++.++.+|++| .+++.+++.      
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   83 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKEF   83 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999 65544332   11124568899999999 777766654      


Q ss_pred             -CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 -DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                       + +|+||||||.....        +++..+++|+.++.++++++.    +.+ .++||++||...+.            
T Consensus        84 g~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~------------  150 (261)
T 1gee_A           84 GK-LDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------  150 (261)
T ss_dssp             SC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------------
T ss_pred             CC-CCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC------------
Confidence             5 99999999975421        234567899999998887763    444 57999999975431            


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +..+...|+.+|++.+.+.+       ..|+++++++||.+.++.
T Consensus       151 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  195 (261)
T 1gee_A          151 PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI  195 (261)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGG
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCch
Confidence            12345789999998887654       248999999999999875

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.91  E-value=4.4e-24  Score=177.05  Aligned_cols=156  Identities=19%  Similarity=0.249  Sum_probs=120.5

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      ..+++|+++||||+|+||++++++|+++|++|++++|+++..        ..+.++++|++| .+++.++++.      +
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--------~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g~   87 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP--------EGFLAVKCDITD-TEQVEQAYKEIEETHGP   87 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------TTSEEEECCTTS-HHHHHHHHHHHHHHTCS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh--------ccceEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence            345689999999999999999999999999999999976532        237889999999 7777665542      4


Q ss_pred             CcEEEEcCCCCC--------CCCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQP--------GWDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~--------~~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||||+..        ..+++..+++|+.++.++++++.    +.+.++||++||...+..            ...
T Consensus        88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~  155 (253)
T 2nm0_A           88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLG------------SAG  155 (253)
T ss_dssp             CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCC------------HHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC------------CCC
Confidence            899999999753        23566678999999999888763    446689999999854321            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       156 ~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~  197 (253)
T 2nm0_A          156 QANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMT  197 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC---
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcch
Confidence            5789999999987765       2589999999999988764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.91  E-value=1.5e-24  Score=183.55  Aligned_cols=154  Identities=19%  Similarity=0.263  Sum_probs=126.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhh-hccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAK-TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      +|+|+||||||+||++++++|+++| ++|++++|++++.. ..+.  ..+++++.+|++| .+++.+++.+ +|+|||++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~--~~~~~~~~~D~~d-~~~l~~~~~~-~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELR--LQGAEVVQGDQDD-QVIMELALNG-AYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHH--HTTCEEEECCTTC-HHHHHHHHTT-CSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHH--HCCCEEEEecCCC-HHHHHHHHhc-CCEEEEeC
Confidence            5899999999999999999999998 99999999876532 1111  2468999999999 8999999999 99999999


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCC
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI  223 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi  223 (252)
                      +.....    ..+.|+.++.+++++|++.++++||++|+.++|+...+          .+...|+.+|..+|+++++.|+
T Consensus        81 ~~~~~~----~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~----------~~~~~y~~sK~~~e~~~~~~gi  146 (299)
T 2wm3_A           81 NYWESC----SQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAG----------RLAAAHFDGKGEVEEYFRDIGV  146 (299)
T ss_dssp             CHHHHT----CHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTT----------SCCCHHHHHHHHHHHHHHHHTC
T ss_pred             CCCccc----cchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCC----------cccCchhhHHHHHHHHHHHCCC
Confidence            853211    24567889999999999999999999888766653211          1235688999999999999999


Q ss_pred             cEEEEeCCcccCCC
Q 025456          224 NYTIIRPGGLRNEP  237 (252)
Q Consensus       224 ~~~~lrPg~i~~~~  237 (252)
                      +++++|||+++++.
T Consensus       147 ~~~ilrp~~~~~~~  160 (299)
T 2wm3_A          147 PMTSVRLPCYFENL  160 (299)
T ss_dssp             CEEEEECCEEGGGG
T ss_pred             CEEEEeecHHhhhc
Confidence            99999999998864

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.91  E-value=4.2e-24  Score=179.61  Aligned_cols=161  Identities=20%  Similarity=0.245  Sum_probs=124.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCC---CeEEEEeeCCCChHHHHHHHcC---
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNP---SLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~---~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....   ++.++.+|++| .++++++++.   
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   82 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK   82 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC-HHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999987654322   11222   68999999999 7766665541   


Q ss_pred             ---CCcEEEEcCCCCCCC------------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCC
Q 025456          135 ---DSEAVVCATGFQPGW------------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~------------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                         ++|+||||||+....            +++..+++|+.++.++++++.    +.+ ++||++||...+...      
T Consensus        83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------  155 (280)
T 1xkq_A           83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA------  155 (280)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC------
T ss_pred             hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC------
Confidence               399999999975421            134557899999999988874    345 799999998654221      


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                           ......|+.+|++.+.+.+       +.|+++++|+||++.|+.
T Consensus       156 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  199 (280)
T 1xkq_A          156 -----QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGF  199 (280)
T ss_dssp             -----CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSH
T ss_pred             -----CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCc
Confidence                 0234789999999987764       358999999999999875

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.91  E-value=3.2e-24  Score=177.68  Aligned_cols=160  Identities=16%  Similarity=0.151  Sum_probs=125.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCch--hhhhcccc-CCCCeEEEEeeCCCCh-HHHHHHHc-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLD--KAKTTLSK-DNPSLQIVKADVTEGS-AKLSEAIG-----  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~--~~~~~~~~-~~~~~~~i~~Dl~d~~-~~~~~~~~-----  133 (252)
                      +++|+++||||+||||++++++|+++|++ |++++|+.+  ..+++... ...++.++.+|++| . +++.+++.     
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV-PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS-CHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC-ChHHHHHHHHHHHHh
Confidence            56899999999999999999999999997 999999863  22222111 13468899999999 5 66655544     


Q ss_pred             --CCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHh----cC---CCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          134 --DDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK----RG---VNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~----~~---~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                        + +|+||||||+....+++..+++|+.++.++++++..    .+   .++||++||...+..            ....
T Consensus        82 ~g~-id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~  148 (254)
T 1sby_A           82 LKT-VDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA------------IHQV  148 (254)
T ss_dssp             HSC-CCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC------------CTTS
T ss_pred             cCC-CCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccC------------CCCc
Confidence              5 999999999877777888899999999999998853    21   368999999865432            1235


Q ss_pred             hHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+.+.       .|+++++|+||.+.++.
T Consensus       149 ~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~  188 (254)
T 1sby_A          149 PVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPL  188 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCcc
Confidence            7899999999877642       68999999999998874

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.91  E-value=2.7e-24  Score=181.06  Aligned_cols=175  Identities=18%  Similarity=0.134  Sum_probs=129.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC------------chhhhh---ccccCCCCeEEEEeeCCCChHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD------------LDKAKT---TLSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~------------~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+            .+..++   .+.....++.++++|++| .++
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~   85 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD-RAA   85 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC-HHH
Confidence            4578999999999999999999999999999999987            222221   112234678999999999 777


Q ss_pred             HHHHHcC------CCcEEEEcCCCCCC------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCC
Q 025456          128 LSEAIGD------DSEAVVCATGFQPG------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQI  193 (252)
Q Consensus       128 ~~~~~~~------~~d~vi~~ag~~~~------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~  193 (252)
                      +.+++..      ++|+||||||+...      .+++..+++|+.|+.++++++...  +.++||++||...+......+
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~  165 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPP  165 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccccc
Confidence            7666541      39999999997542      234566899999999999999654  336999999987654321111


Q ss_pred             CCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..+ ..+......|+.+|++.+.+.+       ..|+++++|+||.+.++...
T Consensus       166 ~~~-~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~  217 (287)
T 3pxx_A          166 GAG-GPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLN  217 (287)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTS
T ss_pred             ccc-ccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccc
Confidence            111 1122346789999999987764       24899999999999998754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.91  E-value=3.2e-24  Score=180.06  Aligned_cols=169  Identities=21%  Similarity=0.161  Sum_probs=128.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC------------chhhhhc---cccCCCCeEEEEeeCCCChH
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD------------LDKAKTT---LSKDNPSLQIVKADVTEGSA  126 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~------------~~~~~~~---~~~~~~~~~~i~~Dl~d~~~  126 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+            .+..++.   +.....++.++++|++| .+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~   87 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD-RE   87 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC-HH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC-HH
Confidence            34678999999999999999999999999999999987            3332221   11134679999999999 77


Q ss_pred             HHHHHHc------CCCcEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCC
Q 025456          127 KLSEAIG------DDSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMG  191 (252)
Q Consensus       127 ~~~~~~~------~~~d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~  191 (252)
                      ++.++++      +++|+||||||+...    .+|+..+++|+.|++++++++.    +.+ .++||++||...+.... 
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-  166 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG-  166 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC-
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc-
Confidence            7776664      139999999997643    2355678999999999999863    333 46999999986432110 


Q ss_pred             CCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          192 QILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                             .+......|+.+|++.+.+.+       ..|+++++|+||.+.+++..
T Consensus       167 -------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~  214 (278)
T 3sx2_A          167 -------SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMIN  214 (278)
T ss_dssp             -------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTS
T ss_pred             -------cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccch
Confidence                   011345789999999987764       35899999999999998754

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.91  E-value=2.3e-24  Score=177.58  Aligned_cols=162  Identities=18%  Similarity=0.165  Sum_probs=125.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      ++++++++||||+||||++++++|+++|++|++++|+.+..+.....    ...++.++.+|++| .+++.+++.     
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS-EESINKAFEEIYNL   82 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC-HHHHHHHHHHHHHh
Confidence            35689999999999999999999999999999999987655432211    13568999999999 777777765     


Q ss_pred             --CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 --DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        + +|+||||||.....        +++..+++|+.++.++++++    ++.+.++||++||...+...          
T Consensus        83 ~~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------  151 (248)
T 2pnf_A           83 VDG-IDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN----------  151 (248)
T ss_dssp             SSC-CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCC----------
T ss_pred             cCC-CCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCC----------
Confidence              5 99999999975421        23456789999997776655    55677899999997543211          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        .....|+.+|.+.+.+.+       ..++++++++||.+.++..
T Consensus       152 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~  195 (248)
T 2pnf_A          152 --VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMT  195 (248)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGG
T ss_pred             --CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchh
Confidence              124679999999887664       2589999999999998753

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.91  E-value=1.4e-24  Score=181.66  Aligned_cols=162  Identities=16%  Similarity=0.137  Sum_probs=126.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .+++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .++++++++.     
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND-ATAVDALVESTLKEF  103 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC-HHHHHHHHHHHHHHc
Confidence            457899999999999999999999999999999999987654322   2124578899999999 7766665541     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||||+....        +|+..+++|+.|+.++++++.    +.+.++||++||...+..            .
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~  171 (270)
T 3ftp_A          104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAG------------N  171 (270)
T ss_dssp             SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC------------C
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCC------------C
Confidence             399999999975422        344568899999999998873    445579999999865421            2


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       172 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~  214 (270)
T 3ftp_A          172 PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDM  214 (270)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcc
Confidence            235789999998887664       258999999999998864

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.91  E-value=2.6e-24  Score=181.06  Aligned_cols=163  Identities=13%  Similarity=0.096  Sum_probs=127.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.      +
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGD-EALHEALVELAVRRFG   84 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999987655432   2234678999999999 776666654      1


Q ss_pred             CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||||+...         .+++..+++|+.|+.++++++    ++.+.++||++||...+..           +.
T Consensus        85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~~  153 (280)
T 3tox_A           85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA-----------GF  153 (280)
T ss_dssp             CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB-----------CC
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC-----------CC
Confidence            39999999996531         234566899999999998887    3445679999999865411           11


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       154 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~  197 (280)
T 3tox_A          154 AGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPAN  197 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTS
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchh
Confidence            235789999999987764       2589999999999999864

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=4.5e-24  Score=177.17  Aligned_cols=158  Identities=14%  Similarity=0.122  Sum_probs=122.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+. ++...... . .++++|++| .+++.++++.      ++|
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~-~-~~~~~D~~~-~~~~~~~~~~~~~~~g~iD   79 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG-G-AFFQVDLED-ERERVRFVEEAAYALGRVD   79 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT-C-EEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh-C-CEEEeeCCC-HHHHHHHHHHHHHHcCCCC
Confidence            468999999999999999999999999999999998766 33222111 4 789999999 7666665541      399


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||||.....        +++..+++|+.|+.++++++.    +.+.++||++||...+..            .....
T Consensus        80 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~~~  147 (256)
T 2d1y_A           80 VLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFA------------EQENA  147 (256)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSB------------CTTBH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCC------------CCCCh
Confidence            999999975421        234567899999999988773    456689999999854321            12357


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .|+.+|++.+.+.+       ..|+++++++||.+.++.
T Consensus       148 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  186 (256)
T 2d1y_A          148 AYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA  186 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch
Confidence            89999999987764       258999999999998864

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.91  E-value=6.5e-24  Score=177.64  Aligned_cols=161  Identities=18%  Similarity=0.215  Sum_probs=124.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+++..+..... ..++.++++|++| .+++.++++.      ++
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~i   83 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE-LPGAVFILCDVTQ-EDDVKTLVSETIRRFGRL   83 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-CTTEEEEECCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hcCCeEEEcCCCC-HHHHHHHHHHHHHHcCCC
Confidence            35689999999999999999999999999999999998765543321 1358899999999 7777666541      39


Q ss_pred             cEEEEcCCCCCC-C--------CCCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG-W--------DLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~-~--------~~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||.... .        +++..+++|+.++.++++++..   .+.++||++||...+..            ....
T Consensus        84 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~  151 (270)
T 1yde_A           84 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIG------------QAQA  151 (270)
T ss_dssp             CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHC------------CTTC
T ss_pred             CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCC------------CCCC
Confidence            999999997532 1        2345678999999999988842   12479999999754211            1124


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+.+       ..|+++++|+||+++|+.
T Consensus       152 ~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~  191 (270)
T 1yde_A          152 VPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPL  191 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHH
T ss_pred             cccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccch
Confidence            679999999987764       268999999999999874

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.91  E-value=3e-24  Score=179.16  Aligned_cols=162  Identities=19%  Similarity=0.208  Sum_probs=122.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.      +
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTD-RHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            35799999999999999999999999999999999987655432   2234578899999999 776666554      1


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||+....        +|+..+++|+.|+.++++++    ++.+.++||++||...+..            ..
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~------------~~  148 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSV------------VP  148 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC------------CT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHccc------------CC
Confidence            399999999976422        34566899999998888776    4456679999999864421            12


Q ss_pred             hhhHHHHHHHHHHHHHHH-----cCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIRK-----SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~-----~gi~~~~lrPg~i~~~~~  238 (252)
                      ....|+.+|++.+.+.+.     .|+++++|+||.+.++..
T Consensus       149 ~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~  189 (264)
T 3tfo_A          149 TAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELA  189 (264)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC-----
T ss_pred             CChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCccc
Confidence            357899999999877642     389999999999998764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.91  E-value=2.6e-24  Score=178.53  Aligned_cols=159  Identities=21%  Similarity=0.222  Sum_probs=123.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------CCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------DDS  136 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~  136 (252)
                      +|+++||||+|+||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.      +++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCCC
Confidence            589999999999999999999999999999999976654322   1123568899999999 777776665      139


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |+||||||....        .+++..+++|+.++.++++++.    +.+ .++||++||...+..            ...
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~  148 (256)
T 1geg_A           81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVG------------NPE  148 (256)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------CTT
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC------------CCC
Confidence            999999997542        1244568899999988877763    345 579999999754321            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       149 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  189 (256)
T 1geg_A          149 LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM  189 (256)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccch
Confidence            4689999999887764       358999999999998864

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.91  E-value=1.9e-24  Score=180.42  Aligned_cols=162  Identities=18%  Similarity=0.141  Sum_probs=125.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++....    ...++.++++|++| .++++++++     
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~   95 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE-PDAPAELARRAAEA   95 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-TTHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999998765442211    24579999999999 666655543     


Q ss_pred             -CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 -DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                       +++|+||||||+....        +|+..+++|+.++.++++++.    +.+ .++||++||...+..           
T Consensus        96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  164 (266)
T 4egf_A           96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAP-----------  164 (266)
T ss_dssp             HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC-----------
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccC-----------
Confidence             1399999999976422        244567899999999988873    333 469999999865421           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       ......|..+|++.+.+.+       +.|+++++|+||.+.++.
T Consensus       165 -~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~  208 (266)
T 4egf_A          165 -LPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEM  208 (266)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHH
T ss_pred             -CCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCch
Confidence             2235789999999987664       358999999999998874

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.91  E-value=2.1e-24  Score=181.21  Aligned_cols=162  Identities=17%  Similarity=0.178  Sum_probs=126.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .+++|+++||||+|+||++++++|+++|++|++++|+.+...+...    ....++.++++|++| .+++++++..    
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA-PPAVMAAVDQALKE  102 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999776543221    124578999999999 7766665541    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||||....        .+|+..+++|+.|++++++++.    +.+.++||++||...+..            
T Consensus       103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------  170 (277)
T 4fc7_A          103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRG------------  170 (277)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHT------------
T ss_pred             cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCC------------
Confidence              49999999996542        2345668999999999999873    344579999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ......|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       171 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~  214 (277)
T 4fc7_A          171 QALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTE  214 (277)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecch
Confidence            1235789999999987764       358999999999999863

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.91  E-value=5.5e-24  Score=175.24  Aligned_cols=159  Identities=18%  Similarity=0.183  Sum_probs=117.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      +++++++||||+||||++++++|+++|++|+++ .|+++..++.   +.....++.++.+|++| .+++.++++      
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   81 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN-PEDVENMVKTAMDAF   81 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHhc
Confidence            468999999999999999999999999999998 5665544322   22134578999999999 777776664      


Q ss_pred             -CCCcEEEEcCCCCC--------CCCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEcccee-eccCCCCCCCcchh
Q 025456          134 -DDSEAVVCATGFQP--------GWDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILV-NGAAMGQILNPAYI  199 (252)
Q Consensus       134 -~~~d~vi~~ag~~~--------~~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v-~~~~~~~~~~~~~~  199 (252)
                       + +|+||||||...        ..+++..+++|+.++.++++++.    +.+.++||++||... ++.           
T Consensus        82 ~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------  149 (247)
T 2hq1_A           82 GR-IDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN-----------  149 (247)
T ss_dssp             SC-CCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred             CC-CCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC-----------
Confidence             5 999999999753        23456678999999888887764    456789999999743 321           


Q ss_pred             ccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                        .....|+.+|++.+.+.+.       .|+++++++||.+.++.
T Consensus       150 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  192 (247)
T 2hq1_A          150 --AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDM  192 (247)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             --CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccc
Confidence              1246799999999877642       48999999999998763

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.91  E-value=4.6e-24  Score=175.48  Aligned_cols=161  Identities=14%  Similarity=0.186  Sum_probs=126.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-  134 (252)
                      +|+|+||||+||||++++++|+++|+       +|++++|+.+..+...   .....++.++.+|++| .+++.+++.. 
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC-HHHHHHHHHHH
Confidence            68999999999999999999999999       9999999876654322   1124568999999999 7777766641 


Q ss_pred             -----CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 -----DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 -----~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                           ++|+||||||.....        +++..+++|+.++.++++++.    +.+.++||++||..++..         
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~---------  151 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKA---------  151 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCC---------
Confidence                 399999999975421        244567899999999988873    456689999999865432         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                         ......|+.+|++.+.+.+       +.|+++++++||+++|+...
T Consensus       152 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~  197 (244)
T 2bd0_A          152 ---FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWG  197 (244)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTC
T ss_pred             ---CCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhh
Confidence               1235789999999987763       35899999999999998753

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.91  E-value=2.6e-24  Score=179.58  Aligned_cols=161  Identities=19%  Similarity=0.207  Sum_probs=124.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---ccc--CCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSK--DNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++.   +..  ...++.++.+|++| .+++.++++.    
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH   83 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC-HHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999997654332   111  12468899999999 7776665542    


Q ss_pred             --CCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHH----HHhcC---CCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          135 --DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEA----CRKRG---VNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~----~~~~~---~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                        ++|+||||||.....+++..+++|+.++.++.+.    +++.+   .++||++||...+...            ....
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~  151 (267)
T 2gdz_A           84 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV------------AQQP  151 (267)
T ss_dssp             HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------TTCH
T ss_pred             cCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC------------CCCc
Confidence              3899999999877677888899999976665544    44442   5799999998654321            2246


Q ss_pred             HHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      .|+.+|++.+.+.+         ..|+++++|+||.+.++.
T Consensus       152 ~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~  192 (267)
T 2gdz_A          152 VYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAI  192 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchh
Confidence            79999998887654         258999999999998874

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.91  E-value=1.2e-23  Score=178.44  Aligned_cols=161  Identities=20%  Similarity=0.279  Sum_probs=124.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCC---CeEEEEeeCCCChHHHHHHHcC---
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNP---SLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~---~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.++.++..   .....   ++.++.+|++| .+++.+++..   
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  102 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA  102 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC-HHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999987654322   11222   68999999999 7776666541   


Q ss_pred             ---CCcEEEEcCCCCCCC----------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 ---DSEAVVCATGFQPGW----------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~----------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                         ++|+||||||+....          +++..+++|+.|+.++++++.    +.+ ++||++||...+...        
T Consensus       103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~--------  173 (297)
T 1xhl_A          103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA--------  173 (297)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC--------
T ss_pred             hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC--------
Confidence               399999999975321          234567899999999888874    345 799999998654221        


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                         ......|+.+|++.+.+.+       +.|+++++|+||.+.++.
T Consensus       174 ---~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~  217 (297)
T 1xhl_A          174 ---HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGF  217 (297)
T ss_dssp             ---CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSH
T ss_pred             ---CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCcc
Confidence               0234679999999987764       369999999999999875

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.91  E-value=2.6e-24  Score=180.62  Aligned_cols=163  Identities=20%  Similarity=0.198  Sum_probs=124.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++....  ...++.++.+|++| .+++.++++      +
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSS-EAGARRLAQALGELSA  104 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS-HHHHHHHHHHHHHHCS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC-HHHHHHHHHHHHHhcC
Confidence            45789999999999999999999999999999999998765432211  11268889999999 777766654      1


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCC----CEEEEEccceeeccCCCCCCCcch
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGV----NRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~----~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                      ++|+||||||+....        +|+..+++|+.++.++++++    ++.+.    ++||++||...+...         
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~---------  175 (276)
T 2b4q_A          105 RLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM---------  175 (276)
T ss_dssp             CCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC---------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC---------
Confidence            499999999975421        23456789999998887776    34444    799999998654321         


Q ss_pred             hccchhh-HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFG-LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~-~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         .... .|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       176 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~  220 (276)
T 2b4q_A          176 ---GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMT  220 (276)
T ss_dssp             ---CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTT
T ss_pred             ---CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcch
Confidence               1123 79999999987764       2589999999999998864

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.91  E-value=3.5e-24  Score=178.72  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=126.5

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-----CCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      .++++|+++||||+|+||++++++|+++|++|++++|+.+..++....     ...++.++.+|++| .+++.++++.  
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~   82 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD-ALQVRAFAEACE   82 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC-HHHHHHHHHHHH
Confidence            356789999999999999999999999999999999998765442211     23358999999999 7666655531  


Q ss_pred             ----CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 ----DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                          ++|+||||||+....        +|+..+++|+.++.++++++.    +.+.++||++||...+..          
T Consensus        83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------  152 (265)
T 3lf2_A           83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQP----------  152 (265)
T ss_dssp             HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSC----------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCC----------
Confidence                499999999975421        244568999999999999873    344578999999854321          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        ......|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       153 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~  196 (265)
T 3lf2_A          153 --EPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQ  196 (265)
T ss_dssp             --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             --CCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCch
Confidence              1235789999999987764       358999999999998864

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.91  E-value=6.8e-24  Score=179.40  Aligned_cols=163  Identities=13%  Similarity=0.196  Sum_probs=127.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh----ccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.+...+    .......++.++++|++| .++++++++.   
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  121 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD-EQHCKDIVQETVR  121 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999998754322    222244678999999999 7766665541   


Q ss_pred             ---CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 ---DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                         ++|+||||||....         .+++..+++|+.|+.++++++...  ..++||++||...+...           
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-----------  190 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGN-----------  190 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCC-----------
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCC-----------
Confidence               39999999997532         134566899999999999999754  23699999998655321           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       191 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~  233 (291)
T 3ijr_A          191 -ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPL  233 (291)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTH
T ss_pred             -CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCc
Confidence             234789999999987764       258999999999999875

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.91  E-value=3.2e-24  Score=178.59  Aligned_cols=162  Identities=17%  Similarity=0.126  Sum_probs=122.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++|+++||||+||||++++++|+++|++|++++|+.+...+.+..  .++.++.+|++| .+++.++++.      +
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~   99 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQ--AGAVALYGDFSC-ETGIMAFIDLLKTQTSS   99 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHH--HTCEEEECCTTS-HHHHHHHHHHHHHHCSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHh--cCCeEEECCCCC-HHHHHHHHHHHHHhcCC
Confidence            345689999999999999999999999999999999998765433321  247899999999 7777666541      4


Q ss_pred             CcEEEEcCCCCCCC-------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          136 SEAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       136 ~d~vi~~ag~~~~~-------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      +|+||||||+....       +++..+++|+.|+.++++++    ++.+.++||++||...+..            ....
T Consensus       100 iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~~  167 (260)
T 3gem_A          100 LRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKG------------SSKH  167 (260)
T ss_dssp             CSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTC------------CSSC
T ss_pred             CCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC------------CCCc
Confidence            99999999975422       23356789999999998887    3456679999999864422            1235


Q ss_pred             hHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          205 GLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                      ..|+.+|++.+.+.+.      .++++++|+||.+.++..
T Consensus       168 ~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~  207 (260)
T 3gem_A          168 IAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPK  207 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC---
T ss_pred             HhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCC
Confidence            7899999999877652      269999999999988753

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.91  E-value=4.1e-24  Score=179.05  Aligned_cols=162  Identities=16%  Similarity=0.194  Sum_probs=122.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      +++ |+++||||+|+||++++++|+++|++|++++|+.+..++....  ...++.++.+|++| .+++.+++..      
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRD-RAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHTCCGGGS
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence            345 8999999999999999999999999999999998765543221  11478999999999 8888877754      


Q ss_pred             CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCC-EEEEEccceeeccCCCCCCCcchhc
Q 025456          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVN-RFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 ~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~-~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      ++|+||||||+...         .+++..+++|+.|+.++++++    ++.+.+ +||++||...+..            
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~------------  164 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWP------------  164 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSC------------
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccC------------
Confidence            37999999997532         124456889999988877666    455667 9999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                      ......|+.+|++.+.+.+.       .|+++++|+||.+.++..
T Consensus       165 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~  209 (272)
T 2nwq_A          165 YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFS  209 (272)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC----
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcch
Confidence            12347899999999987752       589999999999998863

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.91  E-value=6.8e-24  Score=176.21  Aligned_cols=158  Identities=22%  Similarity=0.284  Sum_probs=123.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh--hhhc---cccCCCCeEEEEeeCCCChHHHHHHHc-------
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG-------  133 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------  133 (252)
                      +|+++||||+|+||++++++|+++|++|++++|+.+.  .++.   +.....++.++.+|++| .+++.+++.       
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD-KANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            6899999999999999999999999999999998765  4322   22124578999999999 777766654       


Q ss_pred             CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cCC-CEEEEEccceeeccCCCCCCCcchhc
Q 025456          134 DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGV-NRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~~-~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      + +|+||||||+....        +++..+++|+.++.++++++..    .+. ++||++||...+..            
T Consensus        81 ~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------  147 (258)
T 3a28_C           81 G-FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQG------------  147 (258)
T ss_dssp             C-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSC------------
T ss_pred             C-CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccC------------
Confidence            5 99999999975421        3445688999999999888743    466 79999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ......|..+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~  191 (258)
T 3a28_C          148 FPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGM  191 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChh
Confidence            1235789999999987664       358999999999998864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.91  E-value=6.3e-24  Score=180.43  Aligned_cols=161  Identities=15%  Similarity=0.145  Sum_probs=127.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------~  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.++++      +
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH-LDEMVRLADEAFRLLG  107 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhCC
Confidence            56899999999999999999999999999999999987765432   2234678999999999 777766654      1


Q ss_pred             CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcC-CCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||||+...        .+++..+++|+.|+.++++++    ++.+ .++||++||...+..            .
T Consensus       108 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~  175 (301)
T 3tjr_A          108 GVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVP------------N  175 (301)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC------------C
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC------------C
Confidence            39999999997542        134456899999999999886    3344 469999999864321            2


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       176 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~  218 (301)
T 3tjr_A          176 AGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKL  218 (301)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccc
Confidence            235789999999887654       358999999999998875

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=2.4e-24  Score=179.60  Aligned_cols=161  Identities=16%  Similarity=0.186  Sum_probs=126.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.++++.      ++|
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD   82 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH   82 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHHcCCCc
Confidence            468999999999999999999999999999999999877655433233578999999999 7766665542      389


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      +||||||+....        +++..+++|+.++.++++++...-  .++||++||...++             ......|
T Consensus        83 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-------------~~~~~~Y  149 (263)
T 2a4k_A           83 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-------------AFGLAHY  149 (263)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-------------HHHHHHH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC-------------CCCcHHH
Confidence            999999975421        234567899999999999986531  46999999986541             1235789


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..+|++.+.+.+       +.|+++++|+||.+.++..
T Consensus       150 ~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  187 (263)
T 2a4k_A          150 AAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMT  187 (263)
T ss_dssp             HHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchh
Confidence            999998887654       3589999999999999764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.91  E-value=3.5e-24  Score=179.78  Aligned_cols=163  Identities=18%  Similarity=0.170  Sum_probs=127.5

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.     
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~  107 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE-AGAGTDLIERAEAI  107 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS-TTHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC-HHHHHHHHHHHHHh
Confidence            3467899999999999999999999999999999999876654322   2235678999999999 666655553     


Q ss_pred             CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      +++|+||||||....        .+++..+++|+.|+.++++++    ++.+.++||++||...+.            +.
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~------------~~  175 (275)
T 4imr_A          108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR------------PK  175 (275)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------CC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC------------CC
Confidence            249999999997542        234456889999999998887    445667999999986442            12


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       176 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~  218 (275)
T 4imr_A          176 SVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDR  218 (275)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcc
Confidence            235679999999987764       258999999999998874

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.91  E-value=7e-24  Score=178.51  Aligned_cols=164  Identities=19%  Similarity=0.269  Sum_probs=126.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hh---ccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.+.. +.   .+.....++.++.+|++| .+++.+++..   
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~  103 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEAVK  103 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC-HHHHHHHHHHHHH
Confidence            345789999999999999999999999999999999986542 21   122234578999999999 6666655431   


Q ss_pred             ---CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                         ++|+||||||+...        .+++..+++|+.|+.++++++...  +.++||++||...+...           .
T Consensus       104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-----------~  172 (283)
T 1g0o_A          104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKA-----------V  172 (283)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSS-----------C
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCC-----------C
Confidence               39999999997542        234456899999999999999765  55799999997543211           1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       173 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  215 (283)
T 1g0o_A          173 PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDM  215 (283)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchh
Confidence            125789999999987764       358999999999998874

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.91  E-value=3.4e-24  Score=178.13  Aligned_cols=164  Identities=15%  Similarity=0.102  Sum_probs=121.9

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +++++|+++||||+|+||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.++++.      +
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~   83 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISK-EADVDAAVEAALSKFGK   83 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSC
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence            45678999999999999999999999999999999999887665443334679999999999 7766665541      3


Q ss_pred             CcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHH----hcC----CCEEEEEccceeeccCCCCCCCcch
Q 025456          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRG----VNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       136 ~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~----~~~----~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                      +|+||||||+...         .+++..+++|+.++.++++++.    +.+    .++||++||...+..          
T Consensus        84 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------  153 (261)
T 3n74_A           84 VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRP----------  153 (261)
T ss_dssp             CCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSC----------
T ss_pred             CCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCC----------
Confidence            9999999997541         1234567899999988888773    221    357999999754321          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ...+..|..+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       154 --~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  198 (261)
T 3n74_A          154 --RPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLL  198 (261)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------
T ss_pred             --CCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhh
Confidence              2235779999999987764       3589999999999998764

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.91  E-value=5.6e-24  Score=177.93  Aligned_cols=157  Identities=18%  Similarity=0.147  Sum_probs=123.1

Q ss_pred             cccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           61 NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        61 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ....++|+|+||||+||||++++++|+++|++|++++|+.+...       ..+..+++|++| .+++.+++..      
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-------~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   80 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV-------NVSDHFKIDVTN-EEEVKEAVEKTTKKYG   80 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT-------TSSEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc-------CceeEEEecCCC-HHHHHHHHHHHHHHcC
Confidence            34567999999999999999999999999999999999875431       357889999999 7776666541      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      ++|+||||||+....        +++..+++|+.|+.++++++    ++.+.++||++||...+..            ..
T Consensus        81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~  148 (269)
T 3vtz_A           81 RIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAA------------TK  148 (269)
T ss_dssp             CCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSB------------CT
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccC------------CC
Confidence            399999999975422        24456789999999988886    3456679999999865432            22


Q ss_pred             hhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~  237 (252)
                      ....|+.+|++.+.+.+.      .++++++|+||.+.++.
T Consensus       149 ~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~  189 (269)
T 3vtz_A          149 NAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPM  189 (269)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcc
Confidence            357899999999987652      28999999999999874

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.91  E-value=4.9e-24  Score=174.10  Aligned_cols=160  Identities=16%  Similarity=0.110  Sum_probs=122.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC---CCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---~~d~vi~~  142 (252)
                      ||+++||||+||||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.+++..   ..|+||||
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~d~lv~~   79 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLAS-HQEVEQLFEQLDSIPSTVVHS   79 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTC-HHHHHHHHHSCSSCCSEEEEC
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCC-HHHHHHHHHHHhhcCCEEEEe
Confidence            4789999999999999999999999999999999887765544344678899999999 8888888876   24999999


Q ss_pred             CCCCCCC--------CCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHH
Q 025456          143 TGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (252)
Q Consensus       143 ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (252)
                      ||.....        +++..+++|+.|+.++++++...   ..++||++||...+..            ......|+.+|
T Consensus        80 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~------------~~~~~~Y~asK  147 (230)
T 3guy_A           80 AGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQP------------KAQESTYCAVK  147 (230)
T ss_dssp             CCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSC------------CTTCHHHHHHH
T ss_pred             CCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCC------------CCCCchhHHHH
Confidence            9975422        24456799999999999987532   1239999999865421            22357899999


Q ss_pred             HHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          212 LQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       212 ~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ++.+.+.+       ..|+++++|+||.+.++..
T Consensus       148 aa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  181 (230)
T 3guy_A          148 WAVKGLIESVRLELKGKPMKIIAVYPGGMATEFW  181 (230)
T ss_dssp             HHHHHHHHHHHHHTTTSSCEEEEEEECCC-----
T ss_pred             HHHHHHHHHHHHHHHhcCeEEEEEECCcccChHH
Confidence            99988764       2489999999999998864

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=4.2e-24  Score=176.81  Aligned_cols=162  Identities=14%  Similarity=0.162  Sum_probs=122.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc------CCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++....      ...++.++.+|++| .+++.+++..  
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~   82 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD-CTKADTEIKDIH   82 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC-HHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC-HHHHHHHHHHHH
Confidence            34689999999999999999999999999999999998765543211      12578999999999 7766665541  


Q ss_pred             ----CCcEEEEcCCCCCCC-------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 ----DSEAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~~-------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                          ++|+||||||+....       +++..+++|+.|+.++++++    ++.+.++||++||...+..           
T Consensus        83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  151 (250)
T 3nyw_A           83 QKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYG-----------  151 (250)
T ss_dssp             HHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-----------------
T ss_pred             HhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCC-----------
Confidence                499999999975432       23456789999999998887    4456679999999864321           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       ..+...|+.+|++.+.+.+       +.|+++++|+||.+.++.
T Consensus       152 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~  195 (250)
T 3nyw_A          152 -FADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM  195 (250)
T ss_dssp             --CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH
T ss_pred             -CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch
Confidence             1125789999999887664       358999999999998864

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.91  E-value=1.7e-23  Score=172.72  Aligned_cols=162  Identities=15%  Similarity=0.153  Sum_probs=124.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..+.....  ...++.++.+|++| .+++.+++..      
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            35689999999999999999999999999999999997665432211  12578999999999 7766665542      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCC-CEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGV-NRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~-~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|+||||||.....        +++..+++|+.++.++++.+    ++.+. ++||++||...+...            
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------  149 (251)
T 1zk4_A           82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD------------  149 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC------------
Confidence            399999999975421        23456789999887766665    45566 799999998654321            


Q ss_pred             chhhHHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|++.+.+.+         ..|+++++++||++.++.
T Consensus       150 ~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~  194 (251)
T 1zk4_A          150 PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPL  194 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHH
T ss_pred             CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchh
Confidence            235789999999987654         458999999999998864

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.91  E-value=9e-24  Score=176.70  Aligned_cols=164  Identities=16%  Similarity=0.190  Sum_probs=125.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .++++|+++||||+||||++++++|+++|++|++++++... .++   .+.....++.++++|++| .+++.++++.   
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   92 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ-VPEIVKLFDQAVA   92 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHH
Confidence            34678999999999999999999999999999998775432 222   222235679999999999 7776666541   


Q ss_pred             ---CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                         ++|+||||||+...        .+|+..+++|+.|+.++++++...-  .++||++||.....           .+.
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~  161 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD-----------FSV  161 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT-----------CCC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc-----------CCC
Confidence               49999999997542        2345668999999999999986542  35999999974110           012


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       162 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~  204 (270)
T 3is3_A          162 PKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDM  204 (270)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTT
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChh
Confidence            235789999999987764       258999999999999986

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.91  E-value=5.1e-24  Score=175.82  Aligned_cols=161  Identities=14%  Similarity=0.191  Sum_probs=123.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc---CCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG---DDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~---~~~d~vi~~  142 (252)
                      ||+|+||||+||||++++++|+++|++|++++|+++..+.          .+.+|++| .+++.+++.   +++|+||||
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~D~~~-~~~~~~~~~~~~~~~d~vi~~   69 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA----------DLSTPGGR-ETAVAAVLDRCGGVLDGLVCC   69 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------CTTSHHHH-HHHHHHHHHHHTTCCSEEEEC
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc----------cccCCccc-HHHHHHHHHHcCCCccEEEEC
Confidence            4789999999999999999999999999999998654321          15689988 777877775   239999999


Q ss_pred             CCCCC-CCCCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCC-C-------Ccch------hccch
Q 025456          143 TGFQP-GWDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQI-L-------NPAY------IFLNV  203 (252)
Q Consensus       143 ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~-~-------~~~~------~~~~~  203 (252)
                      ||... ..+++..+++|+.++.++++++.+    .+.++||++||..+|+.....+ .       ++..      ....+
T Consensus        70 Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (255)
T 2dkn_A           70 AGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQT  149 (255)
T ss_dssp             CCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHHHCCH
T ss_pred             CCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccccCCc
Confidence            99866 556777889999999999998754    3568999999998875431110 0       0000      01135


Q ss_pred             hhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|+++|.+++.       .|++++++|||.++|+.
T Consensus       150 ~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~  190 (255)
T 2dkn_A          150 HLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPL  190 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchh
Confidence            67899999999987652       58999999999999874

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.91  E-value=8.4e-24  Score=177.88  Aligned_cols=162  Identities=19%  Similarity=0.193  Sum_probs=117.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      +++|+++||||+||||++++++|+++|++|++++| +.+..++.   +.....++.++++|++| .+++.++++      
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD-LSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS-GGGHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence            45799999999999999999999999999999986 44443322   22234679999999999 666665554      


Q ss_pred             CCCcEEEEcCCCC--C--------CCCCCCcceehHHHHHHHHHHHH----hcC---CCEEEEEccceeeccCCCCCCCc
Q 025456          134 DDSEAVVCATGFQ--P--------GWDLFAPWKVDNFGTVNLVEACR----KRG---VNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       134 ~~~d~vi~~ag~~--~--------~~~~~~~~~~n~~g~~~ll~~~~----~~~---~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                      +++|+||||||+.  .        ..+|+..+++|+.|+.++++++.    +.+   .++||++||...+...       
T Consensus       106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~-------  178 (280)
T 4da9_A          106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTS-------  178 (280)
T ss_dssp             SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------------
T ss_pred             CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCC-------
Confidence            1399999999973  1        12355678999999999888873    323   4689999998654221       


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                           .....|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       179 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~  222 (280)
T 4da9_A          179 -----PERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMT  222 (280)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---
T ss_pred             -----CCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCch
Confidence                 224679999999987764       2589999999999999864

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.91  E-value=7.6e-24  Score=177.30  Aligned_cols=164  Identities=12%  Similarity=0.090  Sum_probs=126.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.     
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAE  105 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC-HHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999986654322   1124578999999999 777766654     


Q ss_pred             -CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          134 -DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       +++|+||||||+....        +++..+++|+.++.++++++    ++.+.++||++||..++..            
T Consensus       106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------  173 (272)
T 1yb1_A          106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS------------  173 (272)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCC------------
T ss_pred             CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC------------
Confidence             1399999999975432        23456789999988777665    4566789999999865432            


Q ss_pred             cchhhHHHHHHHHHHHHHH----H------cCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR----K------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~----~------~gi~~~~lrPg~i~~~~~  238 (252)
                      ......|+.+|++.+.+.+    +      .|+++++|+||++.++..
T Consensus       174 ~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~  221 (272)
T 1yb1_A          174 VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFI  221 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCST
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Confidence            1245789999999987664    1      389999999999988763

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.91  E-value=1.7e-23  Score=175.16  Aligned_cols=165  Identities=19%  Similarity=0.251  Sum_probs=126.0

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch-hhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .++++|+++||||+||||++++++|+++|++|++++++.. ..+.   .+.....++.++.+|++| .+++++++..   
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  105 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD-AEAIEQAIRETVE  105 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999876643 2222   222235678999999999 7777666541   


Q ss_pred             ---CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 ---DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                         ++|+||||||+....        +|+..+++|+.|+.++++++...  +.++||++||......           +.
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~-----------~~  174 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV-----------PW  174 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC-----------CS
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC-----------CC
Confidence               399999999975422        34566899999999999998654  3469999998632110           11


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       175 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~  218 (271)
T 3v2g_A          175 PGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMN  218 (271)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSS
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcc
Confidence            235789999999987764       2589999999999999864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.90  E-value=8.7e-24  Score=176.22  Aligned_cols=163  Identities=17%  Similarity=0.113  Sum_probs=125.3

Q ss_pred             cCCCcEEEEEcCCC-hHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATG-SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG-~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .+++|+++||||+| +||++++++|+++|++|++++|+.+..++...    ....++.++.+|++| .+++++++..   
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~   97 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS-TEAVDALITQTVE   97 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC-HHHHHHHHHHHHH
Confidence            45789999999997 89999999999999999999999876543221    123579999999999 7776666542   


Q ss_pred             ---CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc-----CCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 ---DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR-----GVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~-----~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                         ++|+||||||+....        +++..+++|+.++.++++++...     +.++||++||...+..          
T Consensus        98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------  167 (266)
T 3o38_A           98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRA----------  167 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCC----------
T ss_pred             HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCC----------
Confidence               499999999975422        24456789999999999887432     4568999999854321          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       168 --~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  212 (266)
T 3o38_A          168 --QHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFL  212 (266)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC---
T ss_pred             --CCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhh
Confidence              2245789999999987764       3689999999999998864

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.90  E-value=6.5e-24  Score=176.88  Aligned_cols=167  Identities=17%  Similarity=0.210  Sum_probs=125.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCC---CeEEEeecCchhhhhc--cccCCCCeEEEEeeCCCChHHHHHHHc---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTT--LSKDNPSLQIVKADVTEGSAKLSEAIG---  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~--~~~~~~~~~~i~~Dl~d~~~~~~~~~~---  133 (252)
                      ..+++++|+||||+||||++++++|+++|   ++|++++|+.+..+..  +.....++.++.+|++| .+++.+++.   
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~   95 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIE   95 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCC-hHHHHHHHHHHH
Confidence            45678999999999999999999999999   9999999987643321  11123579999999999 777766664   


Q ss_pred             ------CCCcEEEEcCCCCC-C--------CCCCCcceehHHHHHHHHHHHHhc----------C-----CCEEEEEccc
Q 025456          134 ------DDSEAVVCATGFQP-G--------WDLFAPWKVDNFGTVNLVEACRKR----------G-----VNRFILISSI  183 (252)
Q Consensus       134 ------~~~d~vi~~ag~~~-~--------~~~~~~~~~n~~g~~~ll~~~~~~----------~-----~~~~v~~SS~  183 (252)
                            + +|+||||||+.. .        .+++..+++|+.++.++++++...          +     .++||++||.
T Consensus        96 ~~~g~~~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  174 (267)
T 1sny_A           96 GVTKDQG-LNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI  174 (267)
T ss_dssp             HHHGGGC-CSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred             HhcCCCC-ccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence                  5 999999999754 1        123346789999999999888432          2     4699999998


Q ss_pred             eeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          184 LVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       184 ~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..+....         +..+...|+.+|++.+.+++       +.|+++++|+||.+.++...
T Consensus       175 ~~~~~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~  228 (267)
T 1sny_A          175 LGSIQGN---------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGG  228 (267)
T ss_dssp             GGCSTTC---------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTC
T ss_pred             cccccCC---------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCC
Confidence            6653221         01234679999999987764       25899999999999888653

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.7e-24  Score=180.02  Aligned_cols=162  Identities=19%  Similarity=0.290  Sum_probs=128.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhcccc-----CCCCeEEEEeeCCCChHHHHHHHcC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~-----~~~~~~~i~~Dl~d~~~~~~~~~~~  134 (252)
                      ++++|+++||||+||||++++++|+++|+   +|++++|+.+..++....     ...++.++.+|++| .++++++++.
T Consensus        30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~  108 (287)
T 3rku_A           30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ-AEKIKPFIEN  108 (287)
T ss_dssp             HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC-GGGHHHHHHT
T ss_pred             hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHH
Confidence            35689999999999999999999999987   999999998766543221     14578899999999 7778777653


Q ss_pred             ------CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCC
Q 025456          135 ------DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       135 ------~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                            ++|+||||||+...         .+|+..+++|+.|+.++++++    ++.+.++||++||...+..       
T Consensus       109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~-------  181 (287)
T 3rku_A          109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDA-------  181 (287)
T ss_dssp             SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC-------
T ss_pred             HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCC-------
Confidence                  49999999997531         124456899999999999887    4566689999999854321       


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                           ......|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       182 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~  225 (287)
T 3rku_A          182 -----YPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEF  225 (287)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSH
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCcc
Confidence                 1235789999999987764       258999999999999874

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=8.5e-23  Score=171.43  Aligned_cols=162  Identities=17%  Similarity=0.230  Sum_probs=124.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++...   .  ...++.++.+|++| .+++.+++.     
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRSQ  108 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC-HHHHHHHHHHHHHh
Confidence            568999999999999999999999999999999999766543221   1  12458889999999 777766654     


Q ss_pred             --CCCcEEEEcCCCCCCC--------CCCCcceehHHH----HHHHHHHHHhcCC--CEEEEEccceeeccCCCCCCCcc
Q 025456          134 --DDSEAVVCATGFQPGW--------DLFAPWKVDNFG----TVNLVEACRKRGV--NRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g----~~~ll~~~~~~~~--~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                        + +|+||||||.....        +++..+++|+.+    +..+++.+++.+.  ++||++||...+...        
T Consensus       109 ~g~-iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~--------  179 (279)
T 1xg5_A          109 HSG-VDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL--------  179 (279)
T ss_dssp             HCC-CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC--------
T ss_pred             CCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccC--------
Confidence              5 99999999975422        234567899999    5666677777775  799999998654211        


Q ss_pred             hhccchhhHHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                        +......|+.+|++.+.+.+         ..++++++|+||.+.++.
T Consensus       180 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~  226 (279)
T 1xg5_A          180 --PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQF  226 (279)
T ss_dssp             --SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSH
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchh
Confidence              12345789999999886653         358999999999998875

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.90  E-value=2.8e-23  Score=176.21  Aligned_cols=164  Identities=16%  Similarity=0.116  Sum_probs=125.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC------------chhhhhc---cccCCCCeEEEEeeCCCChHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD------------LDKAKTT---LSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~------------~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+            .+..++.   +.....++.++++|++| .++
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~  103 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD-FDA  103 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC-HHH
Confidence            4568999999999999999999999999999999987            3332221   22234679999999999 777


Q ss_pred             HHHHHc------CCCcEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHHH----hc-CCCEEEEEccceeec
Q 025456          128 LSEAIG------DDSEAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACR----KR-GVNRFILISSILVNG  187 (252)
Q Consensus       128 ~~~~~~------~~~d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~~----~~-~~~~~v~~SS~~v~~  187 (252)
                      +.++++      +++|+||||||+....         +|+..+++|+.|++++++++.    +. +.++||++||...+.
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~  183 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR  183 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc
Confidence            766654      1499999999975422         234568999999999999873    22 357999999986432


Q ss_pred             cCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .            ......|+.+|++.+.+.+       ..|+++++|+||.+.++...
T Consensus       184 ~------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~  230 (299)
T 3t7c_A          184 G------------AENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLL  230 (299)
T ss_dssp             C------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTS
T ss_pred             C------------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCcccc
Confidence            1            1235789999999987764       35899999999999998753

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.90  E-value=1.5e-23  Score=174.86  Aligned_cols=153  Identities=15%  Similarity=0.160  Sum_probs=121.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+.        ..++.++.+|++| .+++.+++..      ++|
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~iD   76 (264)
T 2dtx_A            6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------EAKYDHIECDVTN-PDQVKASIDHIFKEYGSIS   76 (264)
T ss_dssp             GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------SCSSEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------CCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            568999999999999999999999999999999997643        2468899999999 7777666541      399


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||||+....        +++..+++|+.|+.++++++.    +.+.++||++||...+..            .....
T Consensus        77 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~~  144 (264)
T 2dtx_A           77 VLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASII------------TKNAS  144 (264)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSC------------CTTBH
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccC------------CCCch
Confidence            999999975421        244567899999998888874    345689999999865422            12357


Q ss_pred             HHHHHHHHHHHHHHH----cC--CcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIRK----SG--INYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~~----~g--i~~~~lrPg~i~~~~  237 (252)
                      .|+.+|++.+.+.+.    .+  +++++|+||.+.++.
T Consensus       145 ~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~  182 (264)
T 2dtx_A          145 AYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPL  182 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcc
Confidence            899999999877642    22  999999999998864

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.90  E-value=2.9e-23  Score=174.94  Aligned_cols=164  Identities=21%  Similarity=0.193  Sum_probs=125.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC----------------chhhhh---ccccCCCCeEEEEeeCCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD----------------LDKAKT---TLSKDNPSLQIVKADVTE  123 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~----------------~~~~~~---~~~~~~~~~~~i~~Dl~d  123 (252)
                      .+++|+++||||+|+||++++++|+++|++|++++|+                .+..++   .+.....++.++++|++|
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~   87 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD   87 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence            3568999999999999999999999999999999887                222222   122234679999999999


Q ss_pred             ChHHHHHHHc------CCCcEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccc
Q 025456          124 GSAKLSEAIG------DDSEAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSI  183 (252)
Q Consensus       124 ~~~~~~~~~~------~~~d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~  183 (252)
                       .++++++++      +++|+||||||+....         +|+..+++|+.|++++++++.    +.+ .++||++||.
T Consensus        88 -~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (286)
T 3uve_A           88 -YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV  166 (286)
T ss_dssp             -HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence             777766654      1499999999975422         244568999999999988873    333 4699999998


Q ss_pred             eeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          184 LVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       184 ~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..+..            ......|+.+|++.+.+.+       ..|+++++|+||.+.+++..
T Consensus       167 ~~~~~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~  217 (286)
T 3uve_A          167 GGLKA------------YPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLH  217 (286)
T ss_dssp             GGTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTS
T ss_pred             hhccC------------CCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCccc
Confidence            64321            1235789999999987764       36899999999999998753

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.90  E-value=1.3e-24  Score=174.23  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=123.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc---CCCcEEEEcC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG---DDSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~---~~~d~vi~~a  143 (252)
                      |+++||||+||||++++++|+++  +|++++|+++..+....... . +++.+|++| .+++.+++.   + +|+|||||
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~-~-~~~~~D~~~-~~~~~~~~~~~~~-id~vi~~a   74 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG-A-RALPADLAD-ELEAKALLEEAGP-LDLLVHAV   74 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT-C-EECCCCTTS-HHHHHHHHHHHCS-EEEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc-C-cEEEeeCCC-HHHHHHHHHhcCC-CCEEEECC
Confidence            58999999999999999999998  99999998876554322111 2 888999999 888888887   6 99999999


Q ss_pred             CCCCC--------CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHH
Q 025456          144 GFQPG--------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (252)
Q Consensus       144 g~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (252)
                      |....        .+++..+++|+.++.++++++++.+.++||++||..+|..            ..+...|+.+|.+.|
T Consensus        75 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~------------~~~~~~Y~~sK~a~~  142 (207)
T 2yut_A           75 GKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQ------------VPGFAAYAAAKGALE  142 (207)
T ss_dssp             CCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHS------------STTBHHHHHHHHHHH
T ss_pred             CcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccC------------CCCcchHHHHHHHHH
Confidence            97542        2334567899999999999997777789999999866532            234578999999998


Q ss_pred             HHHHH-------cCCcEEEEeCCcccCCC
Q 025456          216 QYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       216 ~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                      .+++.       .|++++++|||.++++.
T Consensus       143 ~~~~~~~~~~~~~gi~v~~v~pg~v~t~~  171 (207)
T 2yut_A          143 AYLEAARKELLREGVHLVLVRLPAVATGL  171 (207)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECCCCBCSGG
T ss_pred             HHHHHHHHHHhhhCCEEEEEecCcccCCC
Confidence            87652       58999999999999875

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.90  E-value=2.5e-23  Score=175.06  Aligned_cols=162  Identities=14%  Similarity=0.156  Sum_probs=124.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++.......++.++.+|++| .+++.++++.      ++
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   80 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRS-LQDQKRAAERCLAAFGKI   80 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcCCC
Confidence            3568999999999999999999999999999999999877665443344679999999999 6666655431      49


Q ss_pred             cEEEEcCCCCCCC-------------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          137 EAVVCATGFQPGW-------------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       137 d~vi~~ag~~~~~-------------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                      |+||||||+....             +|+..+++|+.++.++++++.    +.+ +++|++||...+..           
T Consensus        81 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~-----------  148 (281)
T 3zv4_A           81 DTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYP-----------  148 (281)
T ss_dssp             CEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSS-----------
T ss_pred             CEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CeEEEEecchhccC-----------
Confidence            9999999975321             134467899999999988873    334 69999999854321           


Q ss_pred             ccchhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                       ......|+.+|++.+.+.+.      ..+++++|.||.+.++..
T Consensus       149 -~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~  192 (281)
T 3zv4_A          149 -NGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLR  192 (281)
T ss_dssp             -SSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--C
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcc
Confidence             12346799999999877652      249999999999999864

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.90  E-value=1.7e-23  Score=180.70  Aligned_cols=152  Identities=22%  Similarity=0.236  Sum_probs=121.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc----hhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--CCCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL----DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~----~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--~~~d  137 (252)
                      |++++|+||||||+||++|+++|+++|++|++++|++    ++..........+++++.+|++| .+++.+++.  + +|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d-~~~l~~~~~~~~-~d   85 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE-QEAMEKILKEHE-ID   85 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTC-HHHHHHHHHHTT-CC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCC-HHHHHHHHhhCC-CC
Confidence            4467999999999999999999999999999999986    22221111013579999999999 899999999  8 99


Q ss_pred             EEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHH
Q 025456          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQ  216 (252)
Q Consensus       138 ~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~  216 (252)
                      +|||++|.           .|+.++.+++++|++.+ +++||+ |+   ||...    ++ ..+..+...|+.+|..+|+
T Consensus        86 ~Vi~~a~~-----------~n~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~----~e-~~~~~p~~~y~~sK~~~e~  145 (346)
T 3i6i_A           86 IVVSTVGG-----------ESILDQIALVKAMKAVGTIKRFLP-SE---FGHDV----NR-ADPVEPGLNMYREKRRVRQ  145 (346)
T ss_dssp             EEEECCCG-----------GGGGGHHHHHHHHHHHCCCSEEEC-SC---CSSCT----TT-CCCCTTHHHHHHHHHHHHH
T ss_pred             EEEECCch-----------hhHHHHHHHHHHHHHcCCceEEee-cc---cCCCC----Cc-cCcCCCcchHHHHHHHHHH
Confidence            99999985           28889999999999999 999886 43   34221    11 1223556889999999999


Q ss_pred             HHHHcCCcEEEEeCCcccCCC
Q 025456          217 YIRKSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       217 ~~~~~gi~~~~lrPg~i~~~~  237 (252)
                      ++++.|++++++|||.+++..
T Consensus       146 ~l~~~g~~~tivrpg~~~g~~  166 (346)
T 3i6i_A          146 LVEESGIPFTYICCNSIASWP  166 (346)
T ss_dssp             HHHHTTCCBEEEECCEESSCC
T ss_pred             HHHHcCCCEEEEEeccccccc
Confidence            999999999999999998865

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.90  E-value=9.8e-24  Score=177.09  Aligned_cols=163  Identities=20%  Similarity=0.215  Sum_probs=125.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-------------chhhhhc---cccCCCCeEEEEeeCCCChH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-------------LDKAKTT---LSKDNPSLQIVKADVTEGSA  126 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-------------~~~~~~~---~~~~~~~~~~i~~Dl~d~~~  126 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+             .+..++.   +.....++.++.+|++| .+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~   86 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD-FD   86 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HH
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HH
Confidence            3568999999999999999999999999999999883             3333221   12234678999999999 77


Q ss_pred             HHHHHHcC------CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcC-CCEEEEEccceeec
Q 025456          127 KLSEAIGD------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNG  187 (252)
Q Consensus       127 ~~~~~~~~------~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~-~~~~v~~SS~~v~~  187 (252)
                      ++.+++..      ++|+||||||+....        +++..+++|+.|++++++++    ++.+ .++||++||...+.
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  166 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK  166 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence            76665542      499999999976432        34456899999999998885    3333 46999999986432


Q ss_pred             cCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .            ......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       167 ~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~  212 (277)
T 3tsc_A          167 M------------QPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMG  212 (277)
T ss_dssp             C------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGG
T ss_pred             C------------CCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcc
Confidence            1            1235779999999987765       3589999999999999864

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.90  E-value=4.7e-24  Score=178.17  Aligned_cols=161  Identities=23%  Similarity=0.271  Sum_probs=125.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-----CCCCeEEEEeeCCCChHHHHHHHcC--C
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD--D  135 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~i~~Dl~d~~~~~~~~~~~--~  135 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..++....     ....+..+.+|++| .+++.++++.  +
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~g~   85 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT-EQGCQDVIEKYPK   85 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS-HHHHHHHHHHCCC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC-HHHHHHHHHhcCC
Confidence            45689999999999999999999999999999999998765432211     13467889999999 7777776652  4


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||||.....        +|+..+++|+.++.++++++    ++.+.++||++||...+..            ...
T Consensus        86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~  153 (267)
T 3t4x_A           86 VDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMP------------SQE  153 (267)
T ss_dssp             CSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSC------------CTT
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccC------------CCc
Confidence            99999999975422        34455899999987776665    4556679999999864421            223


Q ss_pred             hhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCC
Q 025456          204 FGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNE  236 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~  236 (252)
                      ...|+.+|++.+.+.+.       .|+++++|+||.+.++
T Consensus       154 ~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~  193 (267)
T 3t4x_A          154 MAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTE  193 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCc
Confidence            57899999999987652       4799999999999886

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.90  E-value=1.2e-23  Score=174.87  Aligned_cols=171  Identities=17%  Similarity=0.199  Sum_probs=126.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.+...+...    ....++.++.+|++| .+++.+++..   
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~   88 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDA   88 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC-HHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999997554322111    113578999999999 7776665532   


Q ss_pred             ---CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cC-CCEEEEEccceeeccCCCCCCCcch
Q 025456          135 ---DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~-~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                         ++|+||||||.....        +++..+++|+.++.++++++..    .+ .++||++||..++.....     ..
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-----~~  163 (265)
T 1h5q_A           89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS-----SL  163 (265)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE-----ET
T ss_pred             hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc-----cc
Confidence               499999999975422        2334578999999999998743    23 379999999865422110     01


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..+...|+.+|++.+.+++       +.|+++++++||.+.++..
T Consensus       164 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  210 (265)
T 1h5q_A          164 NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQT  210 (265)
T ss_dssp             TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGG
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccc
Confidence            122346789999999987764       2489999999999998753

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.90  E-value=1.5e-23  Score=173.62  Aligned_cols=162  Identities=19%  Similarity=0.189  Sum_probs=124.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEEEeeC--CCChHHHHHHHc---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADV--TEGSAKLSEAIG---  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl--~d~~~~~~~~~~---  133 (252)
                      .+++|+++||||+|+||++++++|+++|++|++++|+.+..++....    ...++.++.+|+  +| .+++.+++.   
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~   87 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCT-SENCQQLAQRIA   87 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCC-HHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCC-HHHHHHHHHHHH
Confidence            45789999999999999999999999999999999998765543211    223788999999  88 666665554   


Q ss_pred             ---CCCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          134 ---DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       134 ---~~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                         +++|+||||||+...         .+|+..+++|+.|+.++++++    ++.+.++||++||...+..         
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~---------  158 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQG---------  158 (252)
T ss_dssp             HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSC---------
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccC---------
Confidence               149999999997421         123456899999999999887    5566689999999854321         


Q ss_pred             hhccchhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~  237 (252)
                         ......|+.+|++.+.+.+.      ..+++++|.||.+.++.
T Consensus       159 ---~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~  201 (252)
T 3f1l_A          159 ---RANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM  201 (252)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH
T ss_pred             ---CCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch
Confidence               12357899999999877652      23999999999998864

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.90  E-value=7.2e-24  Score=179.76  Aligned_cols=163  Identities=17%  Similarity=0.210  Sum_probs=125.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc---C-CCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D-NPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~-~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+.+..++....   . ..++.++.+|++| .+++.+++..   
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~  100 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIK  100 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999998765432211   1 4578999999999 7777665542   


Q ss_pred             ---CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH-----hcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~-----~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                         ++|+||||||....        .+++..+++|+.++.++++++.     +.+.++||++||..++..          
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~----------  170 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG----------  170 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC----------
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccC----------
Confidence               37999999996432        1244567899999999988874     234579999999865432          


Q ss_pred             hccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                        ..+...|+.+|++.+.+.+.       .|+++++++||.+.++.
T Consensus       171 --~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~  214 (302)
T 1w6u_A          171 --SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKG  214 (302)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred             --CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcc
Confidence              12357899999999977642       68999999999998873

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.2e-23  Score=174.45  Aligned_cols=160  Identities=20%  Similarity=0.250  Sum_probs=125.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      +|+++||||+||||++++++|+++|  +.|++.+|+.+..++.......++.++.+|++| .++++++++.      ++|
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id   80 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITE-DSVLKQLVNAAVKGHGKID   80 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHhcCCcc
Confidence            6899999999999999999999985  789989999876654433223578999999999 7776666541      499


Q ss_pred             EEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          138 AVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       138 ~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      +||||||+...         .+|+..+++|+.|+.++++++    ++.+ ++||++||...+..            ....
T Consensus        81 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~------------~~~~  147 (254)
T 3kzv_A           81 SLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMY------------FSSW  147 (254)
T ss_dssp             EEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCS------------SCCS
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccC------------CCCc
Confidence            99999997432         123456899999999998887    5556 79999999865432            1235


Q ss_pred             hHHHHHHHHHHHHHHH-----cCCcEEEEeCCcccCCCCC
Q 025456          205 GLTLIAKLQAEQYIRK-----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~~-----~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..|+.+|++.+.+.+.     .++++++|+||.+.++...
T Consensus       148 ~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~  187 (254)
T 3kzv_A          148 GAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQV  187 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSC
T ss_pred             chHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHH
Confidence            7899999999887652     4899999999999998753

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.90  E-value=1.4e-23  Score=175.28  Aligned_cols=161  Identities=20%  Similarity=0.266  Sum_probs=125.9

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHc----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~----  133 (252)
                      .++++|+|+||||+||||++++++|+++|++|++++| +.+..++.   +.....++.++.+|++| .+++.+++.    
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~   95 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVS   95 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999999 55544322   22134578899999999 777776665    


Q ss_pred             ---CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceee-ccCCCCCCCcch
Q 025456          134 ---DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVN-GAAMGQILNPAY  198 (252)
Q Consensus       134 ---~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~-~~~~~~~~~~~~  198 (252)
                         + +|+||||||.....        +++..+++|+.++.++++++.+.   + ++||++||..++ ...         
T Consensus        96 ~~~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~---------  164 (274)
T 1ja9_A           96 HFGG-LDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMTGI---------  164 (274)
T ss_dssp             HHSC-EEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCCSC---------
T ss_pred             HcCC-CCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccCCC---------
Confidence               5 99999999975421        23456789999999999998654   4 699999998654 211         


Q ss_pred             hccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~  237 (252)
                         .....|+.+|++.|.+++.       .|+++++++||.+.++.
T Consensus       165 ---~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~  207 (274)
T 1ja9_A          165 ---PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDM  207 (274)
T ss_dssp             ---CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHH
T ss_pred             ---CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccc
Confidence               2246799999999987652       48999999999998864

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.90  E-value=6.8e-24  Score=178.08  Aligned_cols=141  Identities=23%  Similarity=0.295  Sum_probs=115.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +|+||||+||||++++++|+++  |++|++++|++++......   .+++++.+|++| .+++.+++.+ +|+|||+||.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~D~~d-~~~~~~~~~~-~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA---QGITVRQADYGD-EAALTSALQG-VEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH---TTCEEEECCTTC-HHHHHHHTTT-CSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc---CCCeEEEcCCCC-HHHHHHHHhC-CCEEEEeCCC
Confidence            4899999999999999999998  9999999998765443222   468899999999 8999999999 9999999985


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCcE
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINY  225 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~  225 (252)
                      ..        ..|+.++.+++++|++.++++||++||..+|..               ...|+.+|.++|+++++.++++
T Consensus        76 ~~--------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~---------------~~~y~~sK~~~e~~~~~~~~~~  132 (286)
T 2zcu_A           76 EV--------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADTS---------------PLGLADEHIETEKMLADSGIVY  132 (286)
T ss_dssp             --------------CHHHHHHHHHHHHTCCEEEEEEETTTTTC---------------CSTTHHHHHHHHHHHHHHCSEE
T ss_pred             Cc--------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC---------------cchhHHHHHHHHHHHHHcCCCe
Confidence            31        247889999999999999999999999866510               1357899999999999899999


Q ss_pred             EEEeCCcccCC
Q 025456          226 TIIRPGGLRNE  236 (252)
Q Consensus       226 ~~lrPg~i~~~  236 (252)
                      +++||+.+.++
T Consensus       133 ~ilrp~~~~~~  143 (286)
T 2zcu_A          133 TLLRNGWYSEN  143 (286)
T ss_dssp             EEEEECCBHHH
T ss_pred             EEEeChHHhhh
Confidence            99999887664

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.90  E-value=1.9e-23  Score=174.79  Aligned_cols=164  Identities=15%  Similarity=0.155  Sum_probs=125.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hh---ccccCCCCeEEEEeeCCCChHHHHHHHc----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT---TLSKDNPSLQIVKADVTEGSAKLSEAIG----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~----  133 (252)
                      +++++|+|+||||+||||++++++|+++|++|++++|+.... +.   .+.....++.++++|++| .+++.++++    
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~  103 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAAS-ESDFIEAIQTIVQ  103 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999964433 21   222234679999999999 777666654    


Q ss_pred             --CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 --DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        +++|+||||||+....        +++..+++|+.++.++++++    ++.+.++||++||...+..           
T Consensus       104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  172 (271)
T 4iin_A          104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERG-----------  172 (271)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC-----------
T ss_pred             hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCC-----------
Confidence              1499999999976532        34456789999998888776    4456679999999854321           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                       ......|+.+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       173 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  217 (271)
T 4iin_A          173 -NMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMN  217 (271)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC--
T ss_pred             -CCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCch
Confidence             2235789999999987764       2589999999999998864

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.90  E-value=1.1e-23  Score=183.43  Aligned_cols=133  Identities=20%  Similarity=0.103  Sum_probs=117.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      |+|+|||||||||++|+++|+++|+ +|++++|+                      +| .+++.+++.+ +|+|||+||.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~----------------------~d-~~~l~~~~~~-~d~Vih~a~~   56 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ----------------------TK-EEELESALLK-ADFIVHLAGV   56 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT----------------------CC-HHHHHHHHHH-CSEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC----------------------CC-HHHHHHHhcc-CCEEEECCcC
Confidence            5899999999999999999999998 88876664                      55 7888888988 9999999998


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH----
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK----  220 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~----  220 (252)
                      ....++...+++|+.++.+++++|++.+++ +||++||..+|+                .+.|+.+|.++|++++.    
T Consensus        57 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~----------------~~~Y~~sK~~~E~~~~~~~~~  120 (369)
T 3st7_A           57 NRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ----------------DNPYGESKLQGEQLLREYAEE  120 (369)
T ss_dssp             BCTTCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS----------------CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC----------------CCCchHHHHHHHHHHHHHHHH
Confidence            777778888999999999999999999987 999999998765                35789999999998865    


Q ss_pred             cCCcEEEEeCCcccCCCCC
Q 025456          221 SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       221 ~gi~~~~lrPg~i~~~~~~  239 (252)
                      .+++++++||++++|+...
T Consensus       121 ~g~~~~i~R~~~v~G~~~~  139 (369)
T 3st7_A          121 YGNTVYIYRWPNLFGKWCK  139 (369)
T ss_dssp             HCCCEEEEEECEEECTTCC
T ss_pred             hCCCEEEEECCceeCCCCC
Confidence            7999999999999998654

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.90  E-value=8.7e-24  Score=174.96  Aligned_cols=162  Identities=17%  Similarity=0.133  Sum_probs=124.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+ ++..+...   .....++.++.+|++| .+++.+++.      
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT-SEACQQLVDEFVAKF   83 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999998 65543321   1124578999999999 777777665      


Q ss_pred             -CCCcEEEEcCCC-CCCC--------CCCCcceehHHHHHHHHHHHH----hcC--C---CEEEEEccceeeccCCCCCC
Q 025456          134 -DDSEAVVCATGF-QPGW--------DLFAPWKVDNFGTVNLVEACR----KRG--V---NRFILISSILVNGAAMGQIL  194 (252)
Q Consensus       134 -~~~d~vi~~ag~-~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~--~---~~~v~~SS~~v~~~~~~~~~  194 (252)
                       + +|+||||||. ....        +++..+++|+.++.++++++.    +.+  .   ++||++||...+..      
T Consensus        84 g~-id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------  156 (258)
T 3afn_B           84 GG-IDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG------  156 (258)
T ss_dssp             SS-CSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC------
T ss_pred             CC-CCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC------
Confidence             5 9999999996 3211        234567899999999888763    222  2   68999999865431      


Q ss_pred             CcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                           +..+...|+.+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       157 -----~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~  202 (258)
T 3afn_B          157 -----GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFH  202 (258)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGG
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccc
Confidence                 11235789999999988764       2489999999999998764

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.90  E-value=5.8e-24  Score=176.81  Aligned_cols=157  Identities=19%  Similarity=0.234  Sum_probs=120.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      .++++|+++||||+++||++++++|+++|++|++.+|+.++.       .....++++|++| .+++++.++.      +
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~   78 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG-------LPEELFVEADLTT-KEGCAIVAEATRQRLGG   78 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT-------SCTTTEEECCTTS-HHHHHHHHHHHHHHTSS
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC-------CCcEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence            367899999999999999999999999999999999975421       1234478899999 6665554431      4


Q ss_pred             CcEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          136 SEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       136 ~d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      +|++|||||+...          ++|+..+++|+.+++++++++    ++.+-++||++||.......           .
T Consensus        79 iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~-----------~  147 (261)
T 4h15_A           79 VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPL-----------P  147 (261)
T ss_dssp             CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------T
T ss_pred             CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCC-----------C
Confidence            9999999996431          235567899999988887776    55666799999997532110           1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|..+|++.+.+.+       ++||++++|.||.+.++.
T Consensus       148 ~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~  190 (261)
T 4h15_A          148 ESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEA  190 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcc
Confidence            124678899999887764       469999999999998864

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.90  E-value=3.7e-23  Score=177.04  Aligned_cols=163  Identities=21%  Similarity=0.195  Sum_probs=122.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ++++++|+||||+||||++++++|+++|++|++++|+.++.++...   .  ...++.++.+|++| .+++.+++..   
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~   83 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS-REGFKMAADEVEA   83 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC-HHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999999876654321   1  12378999999999 7777766541   


Q ss_pred             ---CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----c------CCCEEEEEccceeeccCCCCC
Q 025456          135 ---DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----R------GVNRFILISSILVNGAAMGQI  193 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~------~~~~~v~~SS~~v~~~~~~~~  193 (252)
                         ++|+||||||+....        +++..+++|+.|+.++++++..    .      +.++||++||...+...    
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~----  159 (319)
T 3ioy_A           84 RFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAA----  159 (319)
T ss_dssp             HTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCC----
T ss_pred             hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCC----
Confidence               389999999975422        2445689999999999888732    2      34689999998654321    


Q ss_pred             CCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                              .....|..+|++.+.+.+       +.|+++++|+||.+.|+..
T Consensus       160 --------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  203 (319)
T 3ioy_A          160 --------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIY  203 (319)
T ss_dssp             --------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC----
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcc
Confidence                    224789999997765543       3589999999999998764

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.90  E-value=1.1e-23  Score=174.43  Aligned_cols=162  Identities=16%  Similarity=0.119  Sum_probs=119.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC---CCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---~~d~vi~~  142 (252)
                      ||+++||||+||||++++++|+++|++|++++|+.++.+.         . +.+|++| .++++++++.   ++|+||||
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------~-~~~Dl~~-~~~v~~~~~~~~~~id~lv~~   69 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------D-LSTAEGR-KQAIADVLAKCSKGMDGLVLC   69 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------C-TTSHHHH-HHHHHHHHTTCTTCCSEEEEC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------c-cccCCCC-HHHHHHHHHHhCCCCCEEEEC
Confidence            4789999999999999999999999999999998654321         1 5689998 7888887753   37999999


Q ss_pred             CCCCC-CCCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcc----------------hhcc
Q 025456          143 TGFQP-GWDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPA----------------YIFL  201 (252)
Q Consensus       143 ag~~~-~~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~----------------~~~~  201 (252)
                      ||... ...++..+++|+.++.++++++.    +.+.++||++||...+......+..+.                ..+.
T Consensus        70 Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (257)
T 1fjh_A           70 AGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQ  149 (257)
T ss_dssp             CCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTT
T ss_pred             CCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhcccCC
Confidence            99876 55677889999999999988874    456689999999876621111000000                0122


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|.+.+.+.+       ..|+++++|+||.+.++..
T Consensus       150 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  193 (257)
T 1fjh_A          150 GGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLL  193 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccc
Confidence            356789999999988764       2589999999999998864

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.90  E-value=1.3e-23  Score=177.94  Aligned_cols=163  Identities=15%  Similarity=0.173  Sum_probs=125.5

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh--hh---hccccCCCCeEEEEeeCCCChHHHHHHHc---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AK---TTLSKDNPSLQIVKADVTEGSAKLSEAIG---  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--~~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~---  133 (252)
                      ..+++|+++||||+||||++++++|+++|++|++++|+.+.  .+   +.+.....++.++.+|++| .++++++++   
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~  123 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSD-ESFARSLVHKAR  123 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTS-HHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHH
Confidence            34678999999999999999999999999999998887332  21   1222234678999999999 766665553   


Q ss_pred             ---CCCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 ---DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 ---~~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                         +++|+||||||....         .+|+..+++|+.|+.++++++...-  .++||++||...+...          
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~----------  193 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPS----------  193 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCC----------
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCC----------
Confidence               139999999997431         1245668999999999999996542  2599999998654321          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       194 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~  236 (294)
T 3r3s_A          194 --PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTAL  236 (294)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHH
T ss_pred             --CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCcccc
Confidence              235779999999987764       358999999999999864

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.90  E-value=1.9e-23  Score=175.97  Aligned_cols=163  Identities=17%  Similarity=0.133  Sum_probs=123.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG------  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~------  133 (252)
                      .+++|+++||||+||||++++++|+++|++|+++.|+++..++..   .....++.++.+|++| .+++.+++.      
T Consensus        41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTEH  119 (285)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC-HHHHHHHHHHHHHhc
Confidence            456899999999999999999999999999999888876554322   2224578999999999 777777663      


Q ss_pred             CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          134 DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      +++|+||||||.....        +++..+++|+.|+.++++++.    +.+.++||++||...+...            
T Consensus       120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------------  187 (285)
T 2c07_A          120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN------------  187 (285)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC------------
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC------------
Confidence            1399999999975422        234567899999888777763    5566899999998543221            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|.+.+.+.+       ..|+++++++||.+.++..
T Consensus       188 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  231 (285)
T 2c07_A          188 VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMT  231 (285)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCch
Confidence            234679999998887654       2489999999999998754

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.90  E-value=3.2e-23  Score=171.43  Aligned_cols=157  Identities=18%  Similarity=0.269  Sum_probs=119.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ..+++|+++||||+||||++++++|+++|++|++++|+++..++.     ..+.++ +|+.+..+.+.+.+.+ +|+|||
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~-----~~~~~~-~D~~~~~~~~~~~~~~-iD~lv~   87 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-----GHRYVV-CDLRKDLDLLFEKVKE-VDILVL   87 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-----CSEEEE-CCTTTCHHHHHHHSCC-CSEEEE
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh-----CCeEEE-eeHHHHHHHHHHHhcC-CCEEEE
Confidence            456799999999999999999999999999999999987544332     256777 9994324445555556 999999


Q ss_pred             cCCCCCCC--------CCCCcceehHHHHHHHHHH----HHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          142 ATGFQPGW--------DLFAPWKVDNFGTVNLVEA----CRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       142 ~ag~~~~~--------~~~~~~~~n~~g~~~ll~~----~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                      |||.....        +++..+++|+.++.+++++    +++.+.++||++||..++...            .....|+.
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~~Y~~  155 (249)
T 1o5i_A           88 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI------------ENLYTSNS  155 (249)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------TTBHHHHH
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCC------------CCCchHHH
Confidence            99975421        2445678999997766554    456677899999998665321            23478999


Q ss_pred             HHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          210 AKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       210 sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       156 sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  190 (249)
T 1o5i_A          156 ARMALTGFLKTLSFEVAPYGITVNCVAPGWTETER  190 (249)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTT
T ss_pred             HHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCc
Confidence            9999887654       368999999999999986

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.90  E-value=1.1e-23  Score=177.27  Aligned_cols=163  Identities=15%  Similarity=0.116  Sum_probs=120.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .+++|+++||||+||||++++++|+++|++|++++|+.+..++....    ....+.++++|++| .+++.++++.    
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  108 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD-PDQVAALFAAVRAE  108 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999998765443211    12335899999999 7766665531    


Q ss_pred             --CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcC--CCEEEEEccceeeccCCCCCCCcc
Q 025456          135 --DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRG--VNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 --~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~--~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                        ++|+||||||....         .+++..+++|+.|+.++++++    ++.+  .++||++||...+..         
T Consensus       109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~---------  179 (281)
T 4dry_A          109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTP---------  179 (281)
T ss_dssp             HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCC---------
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCC---------
Confidence              39999999997532         134456899999988888776    3333  469999999854321         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         ......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       180 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~  224 (281)
T 4dry_A          180 ---RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMT  224 (281)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC---
T ss_pred             ---CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhh
Confidence               2235789999999987764       3689999999999999864

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.90  E-value=1.1e-22  Score=171.29  Aligned_cols=146  Identities=23%  Similarity=0.240  Sum_probs=116.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      |+|+||||||+||++++++|+++ |++|++++|++++...+.   ..+++++.+|++| .+++.+++.+ +|+|||++|.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~---~~~v~~~~~D~~d-~~~l~~~~~~-~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW---RGKVSVRQLDYFN-QESMVEAFKG-MDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG---BTTBEEEECCTTC-HHHHHHHTTT-CSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh---hCCCEEEEcCCCC-HHHHHHHHhC-CCEEEEeCCC
Confidence            47999999999999999999998 999999999987655432   2579999999999 8999999999 9999999986


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCcE
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINY  225 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~  225 (252)
                      ...      ...|+.++.+++++|++.++++||++||.+   .....+.        ...   ..+..+|+.+++.|+++
T Consensus        76 ~~~------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~---~~~~~~~--------~~~---~~~~~~e~~~~~~g~~~  135 (289)
T 3e48_A           76 IHP------SFKRIPEVENLVYAAKQSGVAHIIFIGYYA---DQHNNPF--------HMS---PYFGYASRLLSTSGIDY  135 (289)
T ss_dssp             CCS------HHHHHHHHHHHHHHHHHTTCCEEEEEEESC---CSTTCCS--------TTH---HHHHHHHHHHHHHCCEE
T ss_pred             Ccc------chhhHHHHHHHHHHHHHcCCCEEEEEcccC---CCCCCCC--------ccc---hhHHHHHHHHHHcCCCE
Confidence            432      245889999999999999999999999953   2111111        011   12235567777889999


Q ss_pred             EEEeCCcccCCC
Q 025456          226 TIIRPGGLRNEP  237 (252)
Q Consensus       226 ~~lrPg~i~~~~  237 (252)
                      +++|||+++++.
T Consensus       136 ~ilrp~~~~~~~  147 (289)
T 3e48_A          136 TYVRMAMYMDPL  147 (289)
T ss_dssp             EEEEECEESTTH
T ss_pred             EEEecccccccc
Confidence            999999999863

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.90  E-value=1.2e-23  Score=175.14  Aligned_cols=162  Identities=20%  Similarity=0.266  Sum_probs=123.5

Q ss_pred             cCCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCch---hhhhccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ++++|+++||||+  ||||++++++|+++|++|++++|+.+   ..++... ....+.++.+|++| .+++.++++.   
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~-~~~~~~~~~~D~~~-~~~v~~~~~~~~~   82 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAE-ALGGALLFRADVTQ-DEELDALFAGVKE   82 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHH-HTTCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH-hcCCcEEEECCCCC-HHHHHHHHHHHHH
Confidence            4568999999999  99999999999999999999999874   1222111 11247899999999 7777666541   


Q ss_pred             ---CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 ---DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                         ++|+||||||....            .+++..+++|+.++.++++++...  +.++||++||...+..         
T Consensus        83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------  153 (261)
T 2wyu_A           83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKV---------  153 (261)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSB---------
T ss_pred             HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCC---------
Confidence               39999999997531            134456889999999999999654  1259999999754321         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         ...+..|+.+|++.+.+.+       ..|+++++|+||.+.|+..
T Consensus       154 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  198 (261)
T 2wyu_A          154 ---VPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAA  198 (261)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGG
T ss_pred             ---CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchh
Confidence               1234679999999987764       2489999999999999753

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.90  E-value=6.9e-24  Score=176.57  Aligned_cols=164  Identities=21%  Similarity=0.220  Sum_probs=124.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh----ccccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.....+    .......++.++++|++| .+++.+++..     
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTK-KEDLHKIVEEAMSHF   83 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHh
Confidence            357999999999999999999999999999999887644322    222223579999999999 7777766641     


Q ss_pred             -CCcEEEEcCCCC--CC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 -DSEAVVCATGFQ--PG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 -~~d~vi~~ag~~--~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                       ++|+||||||+.  ..        .+++..+++|+.++.++++++    ++.+.++||++||...++..          
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~----------  153 (264)
T 3i4f_A           84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP----------  153 (264)
T ss_dssp             SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC----------
T ss_pred             CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC----------
Confidence             399999999942  21        124456799999999999987    56677899999987433111          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +......|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       154 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  199 (264)
T 3i4f_A          154 GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMK  199 (264)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGG
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccc
Confidence            11235789999999987664       2689999999999998764

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.90  E-value=8.7e-24  Score=176.52  Aligned_cols=153  Identities=19%  Similarity=0.171  Sum_probs=120.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHH-------cCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GDD  135 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~-------~~~  135 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+....        ...+.+|++| .+++.+++       ++ 
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~--------~~~~~~Dv~~-~~~~~~~~~~~~~~~g~-   94 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA--------DLHLPGDLRE-AAYADGLPGAVAAGLGR-   94 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC--------SEECCCCTTS-HHHHHHHHHHHHHHHSC-
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh--------hhccCcCCCC-HHHHHHHHHHHHHhcCC-
Confidence            4568999999999999999999999999999999998654322        2345789999 66555444       35 


Q ss_pred             CcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||||+...        .+++..+++|+.|+.++++++    ++.+.++||++||...+..            ...
T Consensus        95 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~  162 (266)
T 3uxy_A           95 LDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRP------------GPG  162 (266)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBC------------CTT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCC------------CCC
Confidence            9999999997642        234456789999999999987    5666789999999864421            223


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|++.+.+.+       ..|+++++|+||.+.|+.
T Consensus       163 ~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~  203 (266)
T 3uxy_A          163 HALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPM  203 (266)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchH
Confidence            5789999999987764       258999999999999874

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.90  E-value=8.2e-24  Score=176.43  Aligned_cols=151  Identities=18%  Similarity=0.195  Sum_probs=124.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      |+|+||||+||||++++++|++ |++|++++|+++..        .+   +.+|++| .+++.+++.+ ++|+||||||.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~--------~~---~~~Dl~~-~~~~~~~~~~~~~d~vi~~a~~   67 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ--------GG---YKLDLTD-FPRLEDFIIKKRPDVIINAAAM   67 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT--------TC---EECCTTS-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC--------CC---ceeccCC-HHHHHHHHHhcCCCEEEECCcc
Confidence            4799999999999999999994 89999999986421        12   7899999 8888888764 49999999997


Q ss_pred             CCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc
Q 025456          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (252)
Q Consensus       146 ~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (252)
                      ...    .+++..+++|+.++.++++++++.++ +||++||..+|+...+ +..+. .+.++...|+.+|.++|++++. 
T Consensus        68 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~-~~~e~-~~~~~~~~Y~~sK~~~e~~~~~-  143 (273)
T 2ggs_A           68 TDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKG-NYKEE-DIPNPINYYGLSKLLGETFALQ-  143 (273)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSC-SBCTT-SCCCCSSHHHHHHHHHHHHHCC-
T ss_pred             cChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCC-CcCCC-CCCCCCCHHHHHHHHHHHHHhC-
Confidence            642    35667789999999999999999886 9999999999875533 33332 2345567899999999999877 


Q ss_pred             CCcEEEEeCCcccC
Q 025456          222 GINYTIIRPGGLRN  235 (252)
Q Consensus       222 gi~~~~lrPg~i~~  235 (252)
                       ++++++||+.++|
T Consensus       144 -~~~~~iR~~~v~G  156 (273)
T 2ggs_A          144 -DDSLIIRTSGIFR  156 (273)
T ss_dssp             -TTCEEEEECCCBS
T ss_pred             -CCeEEEecccccc
Confidence             8999999999997

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.90  E-value=1.1e-22  Score=171.53  Aligned_cols=163  Identities=13%  Similarity=0.160  Sum_probs=123.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh----------ccccCCCCeEEEEeeCCCChHHHHHH
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----------TLSKDNPSLQIVKADVTEGSAKLSEA  131 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~----------~~~~~~~~~~~i~~Dl~d~~~~~~~~  131 (252)
                      +++++|+++||||+|+||++++++|+++|++|++++|+.++.++          .+.....++.++++|++| .+++.++
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~   83 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD-GDAVAAA   83 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS-HHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHH
Confidence            45678999999999999999999999999999999998763211          111124578999999999 7776666


Q ss_pred             HcC------CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCC
Q 025456          132 IGD------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQI  193 (252)
Q Consensus       132 ~~~------~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~  193 (252)
                      +..      ++|+||||||+....        +++..+++|+.|+.++++++..    .+.++||++||...+...    
T Consensus        84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----  159 (285)
T 3sc4_A           84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK----  159 (285)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG----
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC----
Confidence            541      399999999976422        2345578999999999998843    356799999997543211    


Q ss_pred             CCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCc-ccCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGG-LRNE  236 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~-i~~~  236 (252)
                             ......|+.+|++.+.+.+       ..|+++++|+||+ +.++
T Consensus       160 -------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~  203 (285)
T 3sc4_A          160 -------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA  203 (285)
T ss_dssp             -------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH
Confidence                   1224789999999987764       3689999999994 5554

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.90  E-value=2.3e-23  Score=171.99  Aligned_cols=154  Identities=19%  Similarity=0.239  Sum_probs=118.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+++..++        +..+++|++| .+++.++++.      ++
T Consensus        12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~--------~~~~~~D~~~-~~~~~~~~~~~~~~~g~i   82 (247)
T 1uzm_A           12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG--------LFGVEVDVTD-SDAVDRAFTAVEEHQGPV   82 (247)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT--------SEEEECCTTC-HHHHHHHHHHHHHHHSSC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH--------hcCeeccCCC-HHHHHHHHHHHHHHcCCC
Confidence            4568999999999999999999999999999999998754322        2248899999 7766665541      38


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |+||||||....        .+++..+++|+.++.++++++.    +.+.++||++||...+...            ...
T Consensus        83 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~  150 (247)
T 1uzm_A           83 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI------------GNQ  150 (247)
T ss_dssp             SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------CC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCC------------CCC
Confidence            999999997542        1345667899999999988773    4566899999998543211            124


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  190 (247)
T 1uzm_A          151 ANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDM  190 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccc
Confidence            679999998887664       258999999999998864

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.90  E-value=1.1e-23  Score=173.09  Aligned_cols=159  Identities=19%  Similarity=0.160  Sum_probs=122.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      +|+++||||+||||++++++|+++|++|+++ .|+.+..++..   .....++.++.+|++| .+++.+++..      +
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999999985 78766544322   1123568899999999 7777776651      3


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|+||||||.....        +++..+++|+.++.++++++.+    .+.++||++||...+..            ...
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~  147 (244)
T 1edo_A           80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIG------------NIG  147 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC------------CTT
T ss_pred             CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCC------------CCC
Confidence            99999999975421        2345678999999999888743    46689999999754321            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|.+.+.+.+       ..|+++++++||.+.++.
T Consensus       148 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  188 (244)
T 1edo_A          148 QANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDM  188 (244)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHH
T ss_pred             CccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccch
Confidence            4679999998887654       258999999999998864

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.90  E-value=2.1e-23  Score=171.52  Aligned_cols=158  Identities=18%  Similarity=0.224  Sum_probs=119.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhhhhcc---ccCCCCeEE-EEeeCCCChHHHHHHHc-------
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTL---SKDNPSLQI-VKADVTEGSAKLSEAIG-------  133 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~---~~~~~~~~~-i~~Dl~d~~~~~~~~~~-------  133 (252)
                      ||+++||||+||||++++++|+++|++|+++ .|+.+..++..   .....++.. +.+|++| .+++.+++.       
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE-AEAATALVHQAAEVLG   79 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC-HHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999999998 78876554322   112345666 8999999 777666643       


Q ss_pred             CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHH----HHHhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVE----ACRKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~----~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      + +|+||||||....        .+++..+++|+.++.++++    .+++.+.++||++||...+...            
T Consensus        80 ~-~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------  146 (245)
T 2ph3_A           80 G-LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGN------------  146 (245)
T ss_dssp             C-CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC------------
T ss_pred             C-CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCC------------
Confidence            5 9999999997542        1234567899999665555    4456677899999997543211            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|.+.+.+.+       ..|+++++++||.+.++.
T Consensus       147 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  189 (245)
T 2ph3_A          147 PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEM  189 (245)
T ss_dssp             SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcc
Confidence            124679999998887664       248999999999998864

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.90  E-value=2.4e-23  Score=178.13  Aligned_cols=162  Identities=18%  Similarity=0.213  Sum_probs=123.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC------------chhhhhc---cccCCCCeEEEEeeCCCChHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD------------LDKAKTT---LSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~------------~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+            .+..++.   +.....++.++.+|++| .++
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~  121 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD-LAS  121 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHH
Confidence            4578999999999999999999999999999999876            2222221   12234678999999999 777


Q ss_pred             HHHHHcC------CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcC-CCEEEEEccceeecc
Q 025456          128 LSEAIGD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGA  188 (252)
Q Consensus       128 ~~~~~~~------~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~-~~~~v~~SS~~v~~~  188 (252)
                      +.++++.      ++|+||||||+...        .+|+..+++|+.|++++++++.    +.+ .++||++||...+..
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~  201 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRG  201 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCC
Confidence            7666541      49999999997542        1344567999999999988873    333 468999999865421


Q ss_pred             CCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                                  ......|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       202 ------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~  245 (317)
T 3oec_A          202 ------------APGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEM  245 (317)
T ss_dssp             ------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH
T ss_pred             ------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCcc
Confidence                        1235789999999987764       258999999999998864

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.90  E-value=2.9e-23  Score=174.86  Aligned_cols=161  Identities=14%  Similarity=0.172  Sum_probs=122.8

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCch---hhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+  ||||++++++|+++|++|++++|+.+   ..+++.. ...++.++.+|++| .+++.+++..    
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~-~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~   96 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAK-GFGSDLVVKCDVSL-DEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHH-HTTCCCEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH-hcCCeEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            568999999999  99999999999999999999999874   1111111 11247889999999 7777666541    


Q ss_pred             --CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 --DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 --~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                        ++|+||||||+...            .+++..+++|+.|+.++++++...   +.++||++||...+..         
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~---------  167 (285)
T 2p91_A           97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKV---------  167 (285)
T ss_dssp             TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSB---------
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccC---------
Confidence              39999999997532            123456789999999999998653   2379999999754321         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         ...+..|+.+|++.+.+.+       ..|+++++|+||.+.|+..
T Consensus       168 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  212 (285)
T 2p91_A          168 ---VPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAA  212 (285)
T ss_dssp             ---CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC
T ss_pred             ---CCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchh
Confidence               1234679999999987764       2489999999999999864

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.90  E-value=2e-22  Score=164.86  Aligned_cols=161  Identities=19%  Similarity=0.246  Sum_probs=124.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      ||+++||||+||||++++++|+++|++|++++|+.++.++...    ....++.++.+|++| .+++.++++.      +
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK-AESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC-HHHHHHHHHHHHHhcCC
Confidence            7899999999999999999999999999999999876543221    134678999999999 7777776652      4


Q ss_pred             CcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh---cCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          136 SEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~---~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      +|+||||||+....        +++..+++|+.|+.++++++..   .+.+++|++||...+..            ....
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~------------~~~~  148 (235)
T 3l77_A           81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARL------------IPYG  148 (235)
T ss_dssp             CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSC------------CTTC
T ss_pred             CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhccc------------CCCc
Confidence            99999999975432        2345678999999999998743   22357888877643211            1124


Q ss_pred             hHHHHHHHHHHHHHHH-----cCCcEEEEeCCcccCCCCC
Q 025456          205 GLTLIAKLQAEQYIRK-----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~~-----~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..|+.+|++.+.+.+.     .++++++++||.+.++...
T Consensus       149 ~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~  188 (235)
T 3l77_A          149 GGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGG  188 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTT
T ss_pred             chHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccc
Confidence            6799999999987653     5899999999999987643

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.90  E-value=6.7e-23  Score=169.83  Aligned_cols=163  Identities=19%  Similarity=0.219  Sum_probs=122.1

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEee-cCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~-r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ...++|+|+||||+||||++++++|+++|++|++++ |+.+.....   +.....++.++.+|++| .++++++++.   
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   87 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGD-WDSTKQAFDKVKA   87 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCC-HHHHHHHHHHHHH
Confidence            345689999999999999999999999999999888 444433221   12234678999999999 7777666541   


Q ss_pred             ---CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 ---DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                         ++|+||||||+....        +++..+++|+.|+.++++++    ++.+.++||++||...+..           
T Consensus        88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  156 (256)
T 3ezl_A           88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKG-----------  156 (256)
T ss_dssp             HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGS-----------
T ss_pred             hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccC-----------
Confidence               399999999976422        23456889999988887765    5566689999999854321           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       ......|+.+|++.+.+.+       ..|+++++++||.+.++.
T Consensus       157 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  200 (256)
T 3ezl_A          157 -QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDM  200 (256)
T ss_dssp             -CSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             -CCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcc
Confidence             2235789999998887664       358999999999998864

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.90  E-value=2.4e-23  Score=170.70  Aligned_cols=149  Identities=19%  Similarity=0.162  Sum_probs=119.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc------CCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~------~~~d~v  139 (252)
                      +|+++||||+||||++++++|+++|++|++++|+.+ .        .++.++++|++| .+++.++++      + +|+|
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~--------~~~~~~~~D~~~-~~~~~~~~~~~~~~~~-~d~l   70 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G--------EDLIYVEGDVTR-EEDVRRAVARAQEEAP-LFAV   70 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S--------SSSEEEECCTTC-HHHHHHHHHHHHHHSC-EEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c--------cceEEEeCCCCC-HHHHHHHHHHHHhhCC-ceEE
Confidence            689999999999999999999999999999999865 1        346889999999 777777765      5 9999


Q ss_pred             EEcCCCCCCC------------CCCCcceehHHHHHHHHHHHHhc----C------CCEEEEEccceeeccCCCCCCCcc
Q 025456          140 VCATGFQPGW------------DLFAPWKVDNFGTVNLVEACRKR----G------VNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       140 i~~ag~~~~~------------~~~~~~~~n~~g~~~ll~~~~~~----~------~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                      |||||.....            +++..+++|+.++.++++++.+.    +      .++||++||...+...        
T Consensus        71 i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------  142 (242)
T 1uay_A           71 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ--------  142 (242)
T ss_dssp             EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC--------
T ss_pred             EEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC--------
Confidence            9999975422            33455789999999999988542    1      1399999998665421        


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                          .....|+.+|++.+.+.+       +.|+++++|+||.++|+.
T Consensus       143 ----~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~  185 (242)
T 1uay_A          143 ----IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPL  185 (242)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHH
T ss_pred             ----CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchh
Confidence                235789999999887654       248999999999999875

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.8e-23  Score=172.71  Aligned_cols=161  Identities=17%  Similarity=0.077  Sum_probs=121.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---cCCCCeEEEEeeCCCChHHHHHHHc-------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-------  133 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~i~~Dl~d~~~~~~~~~~-------  133 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+++.       
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ-ESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence            468999999999999999999999999999999999776543221   123468899999999 666655432       


Q ss_pred             CCCcEEEEcCC--CC------C-------CCCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCC
Q 025456          134 DDSEAVVCATG--FQ------P-------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQIL  194 (252)
Q Consensus       134 ~~~d~vi~~ag--~~------~-------~~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~  194 (252)
                      +++|+||||||  +.      .       ..+++..+++|+.+++++.+++    ++.+.++||++||...+..      
T Consensus        82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------  155 (260)
T 2qq5_A           82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY------  155 (260)
T ss_dssp             TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC------
T ss_pred             CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC------
Confidence            24899999994  21      1       1123456789999988777665    3556689999999854321      


Q ss_pred             CcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                             .+...|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       156 -------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  199 (260)
T 2qq5_A          156 -------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELL  199 (260)
T ss_dssp             -------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHH
Confidence                   123679999999987764       3589999999999999864

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.90  E-value=5.6e-24  Score=177.46  Aligned_cols=173  Identities=16%  Similarity=0.124  Sum_probs=127.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHH-CCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHc-------
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-------  133 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~-------  133 (252)
                      ++++|+||||+||||++++++|++ +|++|++++|+.+..++..   .....++.++.+|++| .+++.+++.       
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence            579999999999999999999999 9999999999876554322   1124578999999999 777776665       


Q ss_pred             CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCC-----------C
Q 025456          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMG-----------Q  192 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~-----------~  192 (252)
                      + +|+||||||....        .+++..+++|+.|+.++++++.+.-  .++||++||...+.....           .
T Consensus        82 ~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~  160 (276)
T 1wma_A           82 G-LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE  160 (276)
T ss_dssp             S-EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred             C-CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccc
Confidence            5 9999999997542        1233457899999999999997652  259999999876532100           0


Q ss_pred             CCCcch------------------hccchhhHHHHHHHHHHHHHH-------H----cCCcEEEEeCCcccCCCCC
Q 025456          193 ILNPAY------------------IFLNVFGLTLIAKLQAEQYIR-------K----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       193 ~~~~~~------------------~~~~~~~~y~~sK~~~e~~~~-------~----~gi~~~~lrPg~i~~~~~~  239 (252)
                      ...+..                  .+..+...|+.+|.+.+.+++       .    .|+++++|+||.+.+++..
T Consensus       161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~  236 (276)
T 1wma_A          161 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG  236 (276)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC
T ss_pred             ccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCC
Confidence            011100                  001123789999999887654       2    4899999999999998754

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.89  E-value=3.4e-23  Score=173.62  Aligned_cols=164  Identities=13%  Similarity=0.147  Sum_probs=123.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc----------cccCCCCeEEEEeeCCCChHHHHHHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT----------LSKDNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~----------~~~~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++.          +.....++.++.+|++| .+++.+++
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~   81 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE-EDQVRAAV   81 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC-HHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHH
Confidence            46789999999999999999999999999999999987542211          11124578899999999 77666655


Q ss_pred             c------CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCC
Q 025456          133 G------DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQIL  194 (252)
Q Consensus       133 ~------~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~  194 (252)
                      .      +++|+||||||+....        +++..+++|+.|+.++++++.    +.+.++||++||...+...     
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-----  156 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA-----  156 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH-----
T ss_pred             HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-----
Confidence            4      1499999999975422        344567899999999988873    4456799999997543210     


Q ss_pred             CcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCC-cccCCC
Q 025456          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPG-GLRNEP  237 (252)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg-~i~~~~  237 (252)
                           .......|+.+|++.+.+.+       ..|+++++|.|| .+.++.
T Consensus       157 -----~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~  202 (274)
T 3e03_A          157 -----WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDA  202 (274)
T ss_dssp             -----HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC--
T ss_pred             -----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccch
Confidence                 01235779999999987764       358999999999 466664

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.89  E-value=2.7e-23  Score=171.30  Aligned_cols=162  Identities=17%  Similarity=0.185  Sum_probs=123.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c-CCCCeEEEEeeC--CCChHHHHHHHc---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K-DNPSLQIVKADV--TEGSAKLSEAIG---  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~-~~~~~~~i~~Dl--~d~~~~~~~~~~---  133 (252)
                      .+++|+++||||+|+||++++++|+++|++|++++|+.+..++...   . ...+..++.+|+  +| .+++.+++.   
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~-~~~~~~~~~~~~   89 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENAT-AQQYRELAARVE   89 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCC-HHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCC-HHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999876554221   1 235678888888  77 655555443   


Q ss_pred             ---CCCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          134 ---DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       134 ---~~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                         +++|+||||||+...         .+++..+++|+.|+.++++++    ++.+.++||++||...+..         
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~---------  160 (247)
T 3i1j_A           90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKG---------  160 (247)
T ss_dssp             HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSC---------
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCC---------
Confidence               139999999997432         134456789999999999988    4455679999999754321         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------H-cCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~-~gi~~~~lrPg~i~~~~  237 (252)
                         ...+..|+.+|++.+.+.+       . .++++++|.||.+.++.
T Consensus       161 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~  205 (247)
T 3i1j_A          161 ---RANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM  205 (247)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH
T ss_pred             ---CCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc
Confidence               2235789999999987664       2 58999999999998864

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.89  E-value=2.6e-23  Score=176.58  Aligned_cols=175  Identities=19%  Similarity=0.180  Sum_probs=124.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc----ccCCCCeEEEEeeCCCCh-HHHHHHH-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----SKDNPSLQIVKADVTEGS-AKLSEAI-----  132 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~i~~Dl~d~~-~~~~~~~-----  132 (252)
                      .+++|+|+||||+||||++++++|+++|++|++++|+.++.++..    .....++.++.+|++| . +++.+++     
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~v~~~~~~~~~   87 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD-PIATMSSLADFIKT   87 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS-CHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC-cHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999999987654322    1123579999999999 5 5555444     


Q ss_pred             --cCCCcEEEEcCCCCCC--------------------------------------CCCCCcceehHHHHHHHHHHHH--
Q 025456          133 --GDDSEAVVCATGFQPG--------------------------------------WDLFAPWKVDNFGTVNLVEACR--  170 (252)
Q Consensus       133 --~~~~d~vi~~ag~~~~--------------------------------------~~~~~~~~~n~~g~~~ll~~~~--  170 (252)
                        .+ +|+||||||+...                                      .+++..+++|+.|+.++++++.  
T Consensus        88 ~~g~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~  166 (311)
T 3o26_A           88 HFGK-LDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPL  166 (311)
T ss_dssp             HHSS-CCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             hCCC-CCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHh
Confidence              35 9999999997531                                      1123447899999988888873  


Q ss_pred             --hcCCCEEEEEccceeeccCCCC-----------CCC--------------------cchhccchhhHHHHHHHHHHHH
Q 025456          171 --KRGVNRFILISSILVNGAAMGQ-----------ILN--------------------PAYIFLNVFGLTLIAKLQAEQY  217 (252)
Q Consensus       171 --~~~~~~~v~~SS~~v~~~~~~~-----------~~~--------------------~~~~~~~~~~~y~~sK~~~e~~  217 (252)
                        +.+.++||++||...+......           ...                    +..........|+.+|++.+.+
T Consensus       167 l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~  246 (311)
T 3o26_A          167 LQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAY  246 (311)
T ss_dssp             HTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHH
T ss_pred             hccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHH
Confidence              4456799999998654321100           000                    0000012347899999999987


Q ss_pred             HHH-----cCCcEEEEeCCcccCCCCC
Q 025456          218 IRK-----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       218 ~~~-----~gi~~~~lrPg~i~~~~~~  239 (252)
                      .+.     .++++++|+||.+.++...
T Consensus       247 ~~~la~e~~~i~v~~v~PG~v~T~~~~  273 (311)
T 3o26_A          247 TRVLANKIPKFQVNCVCPGLVKTEMNY  273 (311)
T ss_dssp             HHHHHHHCTTSEEEEECCCSBCSGGGT
T ss_pred             HHHHHhhcCCceEEEecCCceecCCcC
Confidence            652     3699999999999998643

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.89  E-value=2.4e-23  Score=175.99  Aligned_cols=161  Identities=20%  Similarity=0.161  Sum_probs=123.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEee-cCchhhhhccc----cCCCCeEEEEeeCCCChH------------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTTLS----KDNPSLQIVKADVTEGSA------------  126 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~------------  126 (252)
                      +++|+++||||+|+||++++++|+++|++|++++ |+.+..++...    ....++.++++|++| .+            
T Consensus         7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   85 (291)
T 1e7w_A            7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN-VATAPVSGADGSAP   85 (291)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-SCBCCCC----CCC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCC-cccccccccccccc
Confidence            4689999999999999999999999999999999 98766543221    124578999999999 56            


Q ss_pred             -----HHHHHHc------CCCcEEEEcCCCCCCC----------------------CCCCcceehHHHHHHHHHHHH---
Q 025456          127 -----KLSEAIG------DDSEAVVCATGFQPGW----------------------DLFAPWKVDNFGTVNLVEACR---  170 (252)
Q Consensus       127 -----~~~~~~~------~~~d~vi~~ag~~~~~----------------------~~~~~~~~n~~g~~~ll~~~~---  170 (252)
                           ++.+++.      +++|+||||||+....                      +++..+++|+.++.++++++.   
T Consensus        86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m  165 (291)
T 1e7w_A           86 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV  165 (291)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                 6666654      1399999999975321                      123457899999999988874   


Q ss_pred             -hcC------CCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          171 -KRG------VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       171 -~~~------~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                       +.+      .++||++||...+..            ......|..+|++.+.+.+       ..|+++++|+||.+.++
T Consensus       166 ~~~~~~~~~~~g~Iv~isS~~~~~~------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~  233 (291)
T 1e7w_A          166 AGTPAKHRGTNYSIINMVDAMTNQP------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV  233 (291)
T ss_dssp             HTSCGGGSCSCEEEEEECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCG
T ss_pred             HhcCCCCCCCCcEEEEEechhhcCC------------CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCC
Confidence             444      579999999854321            1235789999999987664       35899999999999887


Q ss_pred             C
Q 025456          237 P  237 (252)
Q Consensus       237 ~  237 (252)
                      .
T Consensus       234 ~  234 (291)
T 1e7w_A          234 D  234 (291)
T ss_dssp             G
T ss_pred             c
Confidence            6

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.89  E-value=3.9e-23  Score=175.36  Aligned_cols=161  Identities=17%  Similarity=0.191  Sum_probs=123.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c-----CCCCeEEEEeeCCCChHHHHHHHcC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K-----DNPSLQIVKADVTEGSAKLSEAIGD  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~-----~~~~~~~i~~Dl~d~~~~~~~~~~~  134 (252)
                      .+++++|+||||+||||++++++|+++|++|++++|+.+..+....   .     ...++.++.+|++| .+++.+++..
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~   93 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVKS   93 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC-HHHHHHHHHH
Confidence            4568999999999999999999999999999999999765543211   1     24578999999999 7777666542


Q ss_pred             ------CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHh----cCCCEEEEEccceeeccCCCCCCCc
Q 025456          135 ------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       135 ------~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~----~~~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                            ++|+||||||.....        +++..+++|+.|+.++++++..    .+.++||++||.. +..        
T Consensus        94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~--------  164 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAG--------  164 (303)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTC--------
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccC--------
Confidence                  399999999964321        2345578999999999999744    2346899999985 211        


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                          ......|+.+|.+.+.+.+       ..|+++++|+||+++|+.
T Consensus       165 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  208 (303)
T 1yxm_A          165 ----FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQT  208 (303)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTG
T ss_pred             ----CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccch
Confidence                1124678889988876654       248999999999999983

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.89  E-value=1.8e-22  Score=168.71  Aligned_cols=163  Identities=19%  Similarity=0.205  Sum_probs=124.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC-chhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~-~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++|+++||||+||||++++++|+++|++|++++++ .+..+..   ......++.++.+|++| .+++++++..     
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVAD-FESCERCAEKVLADF  101 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999844 3333221   12234679999999999 7766665541     


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       ++|+||||||+....        +++..+++|+.++.++++.+.    +.+.++||++||...+..            .
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~  169 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRG------------A  169 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC------------C
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccC------------C
Confidence             399999999975422        234567899999999888873    456679999999754321            2


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .....|+.+|++.+.+.+       ..|+++++++||.+.++...
T Consensus       170 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~  214 (269)
T 3gk3_A          170 FGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVE  214 (269)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTT
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhh
Confidence            235789999998887664       35899999999999998643

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.89  E-value=3.8e-23  Score=177.62  Aligned_cols=161  Identities=20%  Similarity=0.161  Sum_probs=123.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEee-cCchhhhhccc----cCCCCeEEEEeeCCCChH------------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTTLS----KDNPSLQIVKADVTEGSA------------  126 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~------------  126 (252)
                      +++|+++||||+||||++++++|+++|++|++++ |+.+..++...    ....++.++.+|++| .+            
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~  122 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN-VATAPVSGADGSAP  122 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-SCBCC-------CC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCC-chhccccccccccc
Confidence            5689999999999999999999999999999999 88765543221    123578999999999 56            


Q ss_pred             -----HHHHHHcC------CCcEEEEcCCCCCCC----------------------CCCCcceehHHHHHHHHHHHH---
Q 025456          127 -----KLSEAIGD------DSEAVVCATGFQPGW----------------------DLFAPWKVDNFGTVNLVEACR---  170 (252)
Q Consensus       127 -----~~~~~~~~------~~d~vi~~ag~~~~~----------------------~~~~~~~~n~~g~~~ll~~~~---  170 (252)
                           ++.+++..      ++|+||||||+....                      +++..+++|+.++.++++++.   
T Consensus       123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m  202 (328)
T 2qhx_A          123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV  202 (328)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 66666541      399999999975321                      122457899999999888874   


Q ss_pred             -hcC------CCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          171 -KRG------VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       171 -~~~------~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                       +.+      .++||++||...+..            ...+..|+.+|++.+.+.+       ..|+++++|+||.+.++
T Consensus       203 ~~~~~~~~~~~g~IV~isS~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~  270 (328)
T 2qhx_A          203 AGTPAKHRGTNYSIINMVDAMTNQP------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV  270 (328)
T ss_dssp             HHSCGGGSCSCEEEEEECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC
T ss_pred             HhcCCcCCCCCcEEEEECchhhccC------------CCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCC
Confidence             444      579999999854321            1235789999999987764       25899999999999998


Q ss_pred             C
Q 025456          237 P  237 (252)
Q Consensus       237 ~  237 (252)
                      .
T Consensus       271 ~  271 (328)
T 2qhx_A          271 D  271 (328)
T ss_dssp             C
T ss_pred             c
Confidence            7

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.89  E-value=2e-23  Score=174.00  Aligned_cols=161  Identities=19%  Similarity=0.309  Sum_probs=122.3

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCch---hhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+  ||||++++++|+++|++|++++|+..   ..+++.. ......++++|++| .+++.++++.    
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~-~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAA-QLGSDIVLQCDVAE-DASIDTMFAELGKV   84 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHH-HTTCCCEEECCTTC-HHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHH-hcCCcEEEEccCCC-HHHHHHHHHHHHHH
Confidence            457999999999  99999999999999999999999862   1222111 11234788999999 7777766641    


Q ss_pred             --CCcEEEEcCCCCCC-------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 --DSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 --~~d~vi~~ag~~~~-------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                        ++|+||||||+...             .+++..+++|+.++.++++++...  +.++||++||...+..         
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------  155 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA---------  155 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB---------
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccC---------
Confidence              38999999997531             124456789999999999999654  1259999999754321         


Q ss_pred             hhccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                         ...+..|+.+|++.+.+.+.       .|+++++|+||++.|+..
T Consensus       156 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  200 (265)
T 1qsg_A          156 ---IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAA  200 (265)
T ss_dssp             ---CTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTG
T ss_pred             ---CCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchh
Confidence               12346799999999887642       489999999999999863

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.89  E-value=3.5e-22  Score=164.07  Aligned_cols=155  Identities=22%  Similarity=0.264  Sum_probs=119.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChH------HHHHHHcCCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA------KLSEAIGDDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~------~~~~~~~~~~d~v  139 (252)
                      +|+++||||+|+||++++++|+++|++|++++|++++..+.+     ++.++.+|++| .+      .+.+.+++ +|+|
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~-----~~~~~~~D~~~-~~~~~~~~~~~~~~g~-id~l   74 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL-----GAVPLPTDLEK-DDPKGLVKRALEALGG-LHVL   74 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH-----TCEEEECCTTT-SCHHHHHHHHHHHHTS-CCEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhh-----CcEEEecCCch-HHHHHHHHHHHHHcCC-CCEE
Confidence            689999999999999999999999999999999987643222     27889999997 31      22233445 9999


Q ss_pred             EEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          140 VCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       140 i~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      |||||.....        +++..+++|+.++.++++++    ++.+.++||++||...+....          ......|
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------~~~~~~Y  144 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG----------PVPIPAY  144 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------TSCCHHH
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC----------CCCCccH
Confidence            9999975421        24456789999999888887    455678999999986553210          1235789


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       145 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  181 (239)
T 2ekp_A          145 TTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEF  181 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCch
Confidence            999999987664       258999999999999875

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.89  E-value=6.3e-23  Score=171.37  Aligned_cols=163  Identities=21%  Similarity=0.227  Sum_probs=119.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .+++|+++||||+||||++++++|+++|++|++.++ +.+..++.   +.....++.++.+|++| .+++.++++.    
T Consensus        24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD-PAAVRRLFATAEEA  102 (267)
T ss_dssp             ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            346899999999999999999999999999998754 44333321   22234678999999999 7777666541    


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                        ++|+||||||+....        +|+..+++|+.|+.++++++...  ..++||++||...+..            ..
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~  170 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLL------------HP  170 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHC------------CT
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccC------------CC
Confidence              399999999976422        24456789999999999988543  2258999999754321            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+..|+.+|++.+.+.+       ..|+++++|.||.+.++..
T Consensus       171 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~  213 (267)
T 3u5t_A          171 SYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLF  213 (267)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC----
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccc
Confidence            35789999999998765       2589999999999998864

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.89  E-value=4.4e-23  Score=172.15  Aligned_cols=164  Identities=22%  Similarity=0.211  Sum_probs=124.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEee-cCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~-r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      ++++|+|+||||+||||++++++|+++|++|+++. |+.+..++.   +.....++.++.+|++| .+++.+++..    
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVAN-REQCREVLEHEIAQ  101 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHH
Confidence            35689999999999999999999999999997765 544443322   22234679999999999 7777766541    


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHH-----hcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~-----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        ++|+||||||+....        +++..+++|+.++.++++++.     +.+.++||++||...+..           
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  170 (267)
T 4iiu_A          102 HGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMG-----------  170 (267)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHC-----------
T ss_pred             hCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccC-----------
Confidence              499999999976432        344567899999999998872     455679999999754321           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                       ......|+.+|++.+.+.+       ..|+++++++||.+.++...
T Consensus       171 -~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~  216 (267)
T 4iiu_A          171 -NRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIE  216 (267)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccc
Confidence             2235789999998876654       35899999999999998643

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.89  E-value=4.4e-23  Score=172.90  Aligned_cols=161  Identities=14%  Similarity=0.207  Sum_probs=122.9

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCch---hhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+  ||||++++++|+++|++|++++|+.+   ..+++.. ...++.++.+|++| .+++.++++.    
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~-~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQ-ELNSPYVYELDVSK-EEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHH-HTTCCCEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-hcCCcEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            468999999999  99999999999999999999999875   2222211 11247889999999 7777666541    


Q ss_pred             --CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 --DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 --~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                        ++|+||||||+...            .+++..+++|+.|+.++++++...  ..++||++||...+..          
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~----------  151 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKY----------  151 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB----------
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCC----------
Confidence              39999999997532            124456789999999999999654  1259999999754321          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ...+..|+.+|++.+.+.+       ..|+++++|+||.+.|+..
T Consensus       152 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  196 (275)
T 2pd4_A          152 --MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLAS  196 (275)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTG
T ss_pred             --CCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchh
Confidence              1235679999999987764       2489999999999999863

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.89  E-value=1.9e-22  Score=170.19  Aligned_cols=163  Identities=16%  Similarity=0.160  Sum_probs=120.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhhhccc----cCCCCeEEEEeeCCCC---hHHHHHHH-
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLS----KDNPSLQIVKADVTEG---SAKLSEAI-  132 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~~~~~----~~~~~~~~i~~Dl~d~---~~~~~~~~-  132 (252)
                      .++++|+++||||+||||++++++|+++|++|++++|+. +..++...    ....++.++.+|++|.   .+++.+++ 
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~   98 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIIN   98 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHH
Confidence            346789999999999999999999999999999999997 55432211    1245789999999982   23343333 


Q ss_pred             ------cCCCcEEEEcCCCCCCCC------------------CCCcceehHHHHHHHHHHHHh----cC------CCEEE
Q 025456          133 ------GDDSEAVVCATGFQPGWD------------------LFAPWKVDNFGTVNLVEACRK----RG------VNRFI  178 (252)
Q Consensus       133 ------~~~~d~vi~~ag~~~~~~------------------~~~~~~~n~~g~~~ll~~~~~----~~------~~~~v  178 (252)
                            ++ +|+||||||+.....                  ++..+++|+.++.++++++..    .+      .++||
T Consensus        99 ~~~~~~g~-iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv  177 (288)
T 2x9g_A           99 SCFRAFGR-CDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIV  177 (288)
T ss_dssp             HHHHHHSC-CCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEE
T ss_pred             HHHHhcCC-CCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEE
Confidence                  35 999999999754221                  223578999999999888743    23      46999


Q ss_pred             EEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          179 LISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       179 ~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ++||...+..            ......|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       178 ~isS~~~~~~------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~  231 (288)
T 2x9g_A          178 NLCDAMVDQP------------CMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV  231 (288)
T ss_dssp             EECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT
T ss_pred             EEecccccCC------------CCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc
Confidence            9999854321            1235789999998887664       358999999999999987

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.89  E-value=4.1e-23  Score=172.79  Aligned_cols=162  Identities=14%  Similarity=0.206  Sum_probs=119.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++++|+||||+||||++++++|+++|++|+++ .|+.+..+..   +.....++.++.+|++| .+++.++++.      
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN-AADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999887 5665544332   22234678999999999 7666665541      


Q ss_pred             CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHhc-------CCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR-------GVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~-------~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                      ++|+||||||+...         .+++..+++|+.|+.++++++...       +.++||++||...+...         
T Consensus       104 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------  174 (272)
T 4e3z_A          104 RLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS---------  174 (272)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC---------
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC---------
Confidence            39999999997542         123456899999999998887432       34689999998654221         


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ...+..|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       175 --~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  219 (272)
T 4e3z_A          175 --ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLH  219 (272)
T ss_dssp             --TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----
T ss_pred             --CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcc
Confidence              1124679999999987654       3489999999999999864

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.89  E-value=1.2e-22  Score=170.28  Aligned_cols=164  Identities=18%  Similarity=0.166  Sum_probs=123.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+..+..   +.....++.++.+|++| .+++.+++..     
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD-PKSVEETISQQEKDF  109 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC-HHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999987544322   11123578999999999 7766665532     


Q ss_pred             -CCcEEEEcCCCCCC-CC---------CCCcceehHHHH----HHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 -DSEAVVCATGFQPG-WD---------LFAPWKVDNFGT----VNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 -~~d~vi~~ag~~~~-~~---------~~~~~~~n~~g~----~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                       ++|+||||||.... ..         ++..+++|+.++    .++++.+++.+.++||++||...+...          
T Consensus       110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~----------  179 (279)
T 3ctm_A          110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN----------  179 (279)
T ss_dssp             SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC-----------
T ss_pred             CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC----------
Confidence             39999999996543 11         224578999994    566666777777899999998543210          


Q ss_pred             ccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~~~~~  238 (252)
                      .......|+.+|++.+.+++.       .+ ++++++||.+.++..
T Consensus       180 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~  224 (279)
T 3ctm_A          180 IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDIT  224 (279)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTT
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccc
Confidence            023457899999999987752       47 999999999998864

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.89  E-value=4.6e-23  Score=168.93  Aligned_cols=153  Identities=15%  Similarity=0.110  Sum_probs=119.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--------CCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--------DDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--------~~~  136 (252)
                      ++|+++||||+|+||++++++|+++|++|++++|+++...       ....++.+|++| .+++.++++        +++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~g~i   73 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------DSNILVDGNKNW-TEQEQSILEQTASSLQGSQV   73 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------SEEEECCTTSCH-HHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-------cccEEEeCCCCC-HHHHHHHHHHHHHHhCCCCC
Confidence            5789999999999999999999999999999999876432       235677899999 766665554        249


Q ss_pred             cEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          137 EAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       137 d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      |+||||||.....         +++..+++|+.++.++++++...  ..++||++||...+..            .....
T Consensus        74 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~~  141 (236)
T 1ooe_A           74 DGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP------------TPSMI  141 (236)
T ss_dssp             EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CTTBH
T ss_pred             CEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccC------------CCCcH
Confidence            9999999975421         23455789999999999998653  2259999999865421            12357


Q ss_pred             HHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      .|..+|++.+.+.+         ..|+++++|+||.+.++.
T Consensus       142 ~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~  182 (236)
T 1ooe_A          142 GYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM  182 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc
Confidence            89999999987764         235999999999998864

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.89  E-value=9.6e-23  Score=171.33  Aligned_cols=162  Identities=15%  Similarity=0.240  Sum_probs=124.2

Q ss_pred             cCCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCc--hhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDL--DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .+++|+++||||+  ++||++++++|+++|++|++++|+.  +..+++.. ...++.++.+|++| .+++.+++..    
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~-~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  100 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCA-EFNPAAVLPCDVIS-DQEIKDLFVELGKV  100 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHG-GGCCSEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHH-hcCCceEEEeecCC-HHHHHHHHHHHHHH
Confidence            3568999999999  4599999999999999999999987  33333222 22458999999999 7776666542    


Q ss_pred             --CCcEEEEcCCCCCC-------------CCCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCc
Q 025456          135 --DSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       135 --~~d~vi~~ag~~~~-------------~~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                        ++|+||||||+...             .+++..+++|+.++.++++++...   ..++||++||...+..        
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~--------  172 (280)
T 3nrc_A          101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKA--------  172 (280)
T ss_dssp             CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSC--------
T ss_pred             cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccC--------
Confidence              48999999997542             123346789999999999988532   3479999999854321        


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                          ...+..|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       173 ----~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  217 (280)
T 3nrc_A          173 ----MPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAA  217 (280)
T ss_dssp             ----CTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGG
T ss_pred             ----CCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhh
Confidence                2235789999999987764       3689999999999999763

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.89  E-value=9.1e-23  Score=171.43  Aligned_cols=162  Identities=20%  Similarity=0.188  Sum_probs=126.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-----CCc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-----DSE  137 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----~~d  137 (252)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++.......++.++++|++| .+++.++++.     ++|
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTS-EDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHTTSSEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhCCCC
Confidence            4578999999999999999999999999999999999877665443334679999999999 7777766641     489


Q ss_pred             EEEEc-CCCCCCC-------------CCCCcceehHHHHHHHHHHHH----h------cCCCEEEEEccceeeccCCCCC
Q 025456          138 AVVCA-TGFQPGW-------------DLFAPWKVDNFGTVNLVEACR----K------RGVNRFILISSILVNGAAMGQI  193 (252)
Q Consensus       138 ~vi~~-ag~~~~~-------------~~~~~~~~n~~g~~~ll~~~~----~------~~~~~~v~~SS~~v~~~~~~~~  193 (252)
                      +|||| +|.....             +++..+++|+.++.++++++.    +      .+.++||++||...+..     
T Consensus       106 ~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----  180 (281)
T 3ppi_A          106 YAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEG-----  180 (281)
T ss_dssp             EEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSC-----
T ss_pred             eEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCC-----
Confidence            99999 5543311             134567899999999998874    2      23469999999865421     


Q ss_pred             CCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                             ......|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       181 -------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~  224 (281)
T 3ppi_A          181 -------QIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPI  224 (281)
T ss_dssp             -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             -------CCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchh
Confidence                   1235789999998887654       358999999999998864

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.89  E-value=9.5e-23  Score=169.28  Aligned_cols=163  Identities=13%  Similarity=0.179  Sum_probs=122.4

Q ss_pred             cCCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCchhhhh---cccc-CCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           63 SVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLSK-DNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      ++++|+++||||+|  +||++++++|+++|++|++.+|+.+..++   .+.+ ...++.++++|++| .+++.+.++.  
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~   81 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS-DEEVINGFEQIG   81 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC-HHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC-HHHHHHHHHHHH
Confidence            56799999999876  99999999999999999999999765543   2222 34578999999999 6666554431  


Q ss_pred             ----CCcEEEEcCCCCCCC------------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCc
Q 025456          135 ----DSEAVVCATGFQPGW------------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~~------------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                          ++|++|||||+....            +|...+++|+.++..+.+.+...  +-++||++||.....         
T Consensus        82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~---------  152 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF---------  152 (256)
T ss_dssp             HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS---------
T ss_pred             HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc---------
Confidence                499999999975311            12234578888888888877532  236999999985321         


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         +...+..|..+|++.+.+.+       ++||++++|.||.+.|+..
T Consensus       153 ---~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~  198 (256)
T 4fs3_A          153 ---AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSA  198 (256)
T ss_dssp             ---CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGG
T ss_pred             ---CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhh
Confidence               12235789999999887664       4699999999999998754

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.89  E-value=2.3e-23  Score=189.25  Aligned_cols=155  Identities=18%  Similarity=0.082  Sum_probs=118.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +|+|+||||+||||++|+++|+++|++|++++|+.....           .+.+|+.+ .  +.+.+.+ +|+|||+||.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~-----------~v~~d~~~-~--~~~~l~~-~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG-----------KRFWDPLN-P--ASDLLDG-ADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT-----------CEECCTTS-C--CTTTTTT-CSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc-----------ceeecccc-h--hHHhcCC-CCEEEECCCC
Confidence            789999999999999999999999999999999875421           25677765 2  3456677 9999999997


Q ss_pred             CCC-----CCCCCcceehHHHHHHHHHH-HHhcCCCEEEEEccceeec-cCCCCCCCcchhccchhhHHHHHHHHHHHHH
Q 025456          146 QPG-----WDLFAPWKVDNFGTVNLVEA-CRKRGVNRFILISSILVNG-AAMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (252)
Q Consensus       146 ~~~-----~~~~~~~~~n~~g~~~ll~~-~~~~~~~~~v~~SS~~v~~-~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (252)
                      ...     .++...+++|+.++.+++++ +++.++++|||+||.++|+ .....+..+....  +...|+..|...|.+.
T Consensus       212 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~--~~~~y~~~~~~~E~~~  289 (516)
T 3oh8_A          212 PIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESES--GDDFLAEVCRDWEHAT  289 (516)
T ss_dssp             -----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCC--CSSHHHHHHHHHHHTT
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCC--CcChHHHHHHHHHHHH
Confidence            532     12334678999999999999 6777889999999999998 3333333333322  4566788888777543


Q ss_pred             ---HHcCCcEEEEeCCcccCCC
Q 025456          219 ---RKSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       219 ---~~~gi~~~~lrPg~i~~~~  237 (252)
                         +..|++++++|||+++|+.
T Consensus       290 ~~~~~~gi~~~ilRp~~v~Gp~  311 (516)
T 3oh8_A          290 APASDAGKRVAFIRTGVALSGR  311 (516)
T ss_dssp             HHHHHTTCEEEEEEECEEEBTT
T ss_pred             HHHHhCCCCEEEEEeeEEECCC
Confidence               4579999999999999975

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.89  E-value=1.9e-23  Score=174.05  Aligned_cols=163  Identities=15%  Similarity=0.209  Sum_probs=119.9

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch---hhhh---ccccCCCCeEEEEeeCCCChHHHHHHHc--
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD---KAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIG--  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~---~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--  133 (252)
                      .++++|+++||||+|+||++++++|+++|++|++++|...   ..++   .+.....++.++++|++| .+++.++++  
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~   85 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN-EEEVAKLFDFA   85 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS-HHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHH
Confidence            3567899999999999999999999999999999877542   2222   122234578999999999 777776654  


Q ss_pred             ----CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 ----DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 ----~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                          +++|+||||||+....        +++..+++|+.|+.++++++...  +.++||++||...+...          
T Consensus        86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~----------  155 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYT----------  155 (262)
T ss_dssp             HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHH----------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCC----------
Confidence                1499999999975422        34456789999999999999764  34699999997654321          


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        .....|+.+|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       156 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~  198 (262)
T 3ksu_A          156 --GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSF  198 (262)
T ss_dssp             --CCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHH
T ss_pred             --CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcc
Confidence              224568899999887764       258999999999998864

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=7e-23  Score=170.31  Aligned_cols=164  Identities=18%  Similarity=0.097  Sum_probs=121.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      ++++|+++||||+||||++++++|+++|++|+++++ +.+..+.   .+.....++.++.+|++| .++++++++.    
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~   83 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN-AAEVEAAISAAADK   83 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            456899999999999999999999999999998844 4443332   122234678999999999 7777666541    


Q ss_pred             --CCcEEEEcCCCC-CCC--------CCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 --DSEAVVCATGFQ-PGW--------DLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 --~~d~vi~~ag~~-~~~--------~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                        ++|+||||||.. ...        +|+..+++|+.|+.++++++...-  .++||++||...+..           +.
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~~  152 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG-----------GG  152 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC-----------CS
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC-----------CC
Confidence              399999999865 211        234568999999999999996542  248999999865411           11


Q ss_pred             chhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          202 NVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                      .....|+.+|++.+.+.+.      .++++++|.||.+.++..
T Consensus       153 ~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~  195 (259)
T 3edm_A          153 PGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFH  195 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC---
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccc
Confidence            2357899999999877642      249999999999998754

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.89  E-value=3.8e-23  Score=177.17  Aligned_cols=162  Identities=17%  Similarity=0.112  Sum_probs=122.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC----------chhhhhc---cccCCCCeEEEEeeCCCChHHHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD----------LDKAKTT---LSKDNPSLQIVKADVTEGSAKLS  129 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~----------~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~  129 (252)
                      .+++|+++||||+||||++++++|+++|++|++++|+          .+..++.   +.....++.++.+|++| .+++.
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~  102 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVAD-WDQAA  102 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTS-HHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHH
Confidence            3568999999999999999999999999999999987          3333221   22234578899999999 77776


Q ss_pred             HHHcC------CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc----C------CCEEEEEcccee
Q 025456          130 EAIGD------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR----G------VNRFILISSILV  185 (252)
Q Consensus       130 ~~~~~------~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~----~------~~~~v~~SS~~v  185 (252)
                      +++..      ++|+||||||+....        +++..+++|+.|+.++++++...    +      -++||++||...
T Consensus       103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~  182 (322)
T 3qlj_A          103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG  182 (322)
T ss_dssp             HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHH
Confidence            66541      399999999976432        34456899999999999887322    1      159999999865


Q ss_pred             eccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +..            ......|+.+|++.+.+.+       ..|+++++|+|| +.++..
T Consensus       183 ~~~------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~  229 (322)
T 3qlj_A          183 LQG------------SVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMT  229 (322)
T ss_dssp             HHC------------BTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCS
T ss_pred             ccC------------CCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccc
Confidence            421            2235789999999987764       268999999999 777654

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.89  E-value=5e-23  Score=169.63  Aligned_cols=153  Identities=16%  Similarity=0.152  Sum_probs=121.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHH-CCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC----CCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----DSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----~~d~v  139 (252)
                      ++|+++||||+||||++++++|++ .|++|++.+|+.+.       ....+.++++|++| .+++.+++..    ++|+|
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~-------~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~id~l   74 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF-------SAENLKFIKADLTK-QQDITNVLDIIKNVSFDGI   74 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC-------CCTTEEEEECCTTC-HHHHHHHHHHTTTCCEEEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc-------ccccceEEecCcCC-HHHHHHHHHHHHhCCCCEE
Confidence            579999999999999999999999 78999988887542       12467899999999 7888777641    39999


Q ss_pred             EEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          140 VCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       140 i~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                      |||||+....        +++..+++|+.|+.++++++...-  .++||++||...+..            ......|+.
T Consensus        75 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------~~~~~~Y~a  142 (244)
T 4e4y_A           75 FLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIA------------KPNSFAYTL  142 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCC------------CTTBHHHHH
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccC------------CCCCchhHH
Confidence            9999975421        244568999999999999986542  158999999865421            123478999


Q ss_pred             HHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          210 AKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       210 sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +|++.+.+.+       ..|+++++|+||.+.++.
T Consensus       143 sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~  177 (244)
T 4e4y_A          143 SKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDL  177 (244)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchh
Confidence            9999987764       368999999999998874

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.88  E-value=2.2e-22  Score=174.50  Aligned_cols=147  Identities=22%  Similarity=0.306  Sum_probs=118.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh-hccccCCCCeEEEEee-CCCChHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-TTLSKDNPSLQIVKAD-VTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~i~~D-l~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++|+|+|||||||||++++++|+++|++|++++|+++... +.+. ...+++++.+| ++| .+++.+++.+ +|+||||
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~-~~~~v~~v~~D~l~d-~~~l~~~~~~-~d~Vi~~   80 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ-AIPNVTLFQGPLLNN-VPLMDTLFEG-AHLAFIN   80 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHH-TSTTEEEEESCCTTC-HHHHHHHHTT-CSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHh-hcCCcEEEECCccCC-HHHHHHHHhc-CCEEEEc
Confidence            3689999999999999999999999999999999876541 1111 22478999999 999 8999999999 9999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccce--eeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSIL--VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~--v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (252)
                      ++...       .+.|..+ .+++++|++.+ +++||++||..  .|+.             .+...|+.+|.++|++++
T Consensus        81 a~~~~-------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~-------------~~~~~y~~sK~~~E~~~~  139 (352)
T 1xgk_A           81 TTSQA-------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP-------------WPAVPMWAPKFTVENYVR  139 (352)
T ss_dssp             CCSTT-------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS-------------CCCCTTTHHHHHHHHHHH
T ss_pred             CCCCC-------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC-------------CCCccHHHHHHHHHHHHH
Confidence            87431       1457776 99999999999 99999999975  2211             112457799999999999


Q ss_pred             HcCCcEEEEeCCcccCC
Q 025456          220 KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       220 ~~gi~~~~lrPg~i~~~  236 (252)
                      ..+++++++||+. +++
T Consensus       140 ~~gi~~~ivrpg~-~g~  155 (352)
T 1xgk_A          140 QLGLPSTFVYAGI-YNN  155 (352)
T ss_dssp             TSSSCEEEEEECE-EGG
T ss_pred             HcCCCEEEEecce-ecC
Confidence            9999999999985 444

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.88  E-value=1.1e-22  Score=167.31  Aligned_cols=153  Identities=17%  Similarity=0.149  Sum_probs=119.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc--------CCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--------DDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~--------~~~  136 (252)
                      ++|+++||||+|+||++++++|+++|++|++++|+++...       ....++.+|++| .+++.++++        +++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~g~i   77 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------SASVIVKMTDSF-TEQADQVTAEVGKLLGDQKV   77 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------SEEEECCCCSCH-HHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-------CCcEEEEcCCCC-HHHHHHHHHHHHHHhCCCCC
Confidence            5789999999999999999999999999999999875432       235678899999 776666554        249


Q ss_pred             cEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          137 EAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       137 d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      |+||||||.....         +++..+++|+.++.++++++...  ..++||++||...+..            .....
T Consensus        78 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~~  145 (241)
T 1dhr_A           78 DAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDG------------TPGMI  145 (241)
T ss_dssp             EEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CTTBH
T ss_pred             CEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccC------------CCCch
Confidence            9999999975421         23455789999999999998653  1259999999865421            12357


Q ss_pred             HHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      .|..+|++.+.+.+         ..|+++++|+||.+.++.
T Consensus       146 ~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~  186 (241)
T 1dhr_A          146 GYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM  186 (241)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc
Confidence            89999999998764         246999999999998864

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.88  E-value=5.5e-23  Score=171.78  Aligned_cols=159  Identities=17%  Similarity=0.214  Sum_probs=122.7

Q ss_pred             CCCcEEEEEcC--CChHHHHHHHHHHHCCCeEEEeecCchhh-hhccccCCCCeEEEEeeCCCChHHHHHHHc-------
Q 025456           64 VKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------  133 (252)
Q Consensus        64 ~~~~~vlVtGa--tG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------  133 (252)
                      +++|+++||||  +|+||++++++|+++|++|++++|+.++. ++.......++.++.+|++| .+++++++.       
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   83 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN-EEHLASLAGRVTEAIG   83 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC-HHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            46899999999  99999999999999999999999987653 33322223468899999999 776666554       


Q ss_pred             ---CCCcEEEEcCCCCCC-------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCC
Q 025456          134 ---DDSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       134 ---~~~d~vi~~ag~~~~-------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                         + +|+||||||+...             .+++..+++|+.++.++++++...  ..++||++||...++        
T Consensus        84 ~~~~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~--------  154 (269)
T 2h7i_A           84 AGNK-LDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA--------  154 (269)
T ss_dssp             TTCC-EEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC--------
T ss_pred             CCCC-ceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc--------
Confidence               5 9999999997541             123455789999999999998643  125999999874321        


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                           ...+..|+.+|++.+.+.+       +.|+++++|+||.+.++.
T Consensus       155 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~  198 (269)
T 2h7i_A          155 -----MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLA  198 (269)
T ss_dssp             -----CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHH
T ss_pred             -----cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchh
Confidence                 1235789999999987664       258999999999998863

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.88  E-value=1.2e-22  Score=172.17  Aligned_cols=164  Identities=15%  Similarity=0.143  Sum_probs=125.8

Q ss_pred             ccCCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCchhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           62 VSVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      ..+++|+++||||+|  +||++++++|+++|++|++++|+.+..+.   ... ....+.++++|++| .++++++++.  
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dv~d-~~~v~~~~~~~~  103 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAE-SLGVKLTVPCDVSD-AESVDNMFKVLA  103 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHH-HHTCCEEEECCTTC-HHHHHHHHHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH-hcCCeEEEEcCCCC-HHHHHHHHHHHH
Confidence            446789999999997  99999999999999999999998643322   111 12347899999999 7777666541  


Q ss_pred             ----CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCc
Q 025456          135 ----DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                          ++|+||||||+...            .+|+..+++|+.++.++++++...-  .++||++||...+..        
T Consensus       104 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~--------  175 (296)
T 3k31_A          104 EEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKV--------  175 (296)
T ss_dssp             HHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC--------
T ss_pred             HHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccC--------
Confidence                49999999997531            1345668999999999999986532  359999999854321        


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                          ...+..|+.+|++.+.+.+       ..|+++++|+||.+.++...
T Consensus       176 ----~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~  221 (296)
T 3k31_A          176 ----VPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASS  221 (296)
T ss_dssp             ----CTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCC
T ss_pred             ----CCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhh
Confidence                1235789999999987764       25899999999999998643

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.88  E-value=2.2e-22  Score=170.59  Aligned_cols=148  Identities=22%  Similarity=0.308  Sum_probs=115.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-------hhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-------DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-------~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      |++|+||||||+||++++++|+++|++|++++|++       ++..........+++++.+|++| .+++.+++.+ +|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d-~~~l~~~~~~-~d~   79 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND-HETLVKAIKQ-VDI   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC-HHHHHHHHTT-CSE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC-HHHHHHHHhC-CCE
Confidence            67899999999999999999999999999999986       33221110012468999999999 8999999999 999


Q ss_pred             EEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCCCCCCcchhccch-hhHHHHHHHHHHH
Q 025456          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTLIAKLQAEQ  216 (252)
Q Consensus       139 vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~-~~~y~~sK~~~e~  216 (252)
                      |||++|...           +.++.+++++|++.+ +++||+ |+   ||....    +. .+..+ ...| .+|..+|+
T Consensus        80 vi~~a~~~~-----------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~----~~-~~~~p~~~~y-~sK~~~e~  138 (307)
T 2gas_A           80 VICAAGRLL-----------IEDQVKIIKAIKEAGNVKKFFP-SE---FGLDVD----RH-DAVEPVRQVF-EEKASIRR  138 (307)
T ss_dssp             EEECSSSSC-----------GGGHHHHHHHHHHHCCCSEEEC-SC---CSSCTT----SC-CCCTTHHHHH-HHHHHHHH
T ss_pred             EEECCcccc-----------cccHHHHHHHHHhcCCceEEee-cc---cccCcc----cc-cCCCcchhHH-HHHHHHHH
Confidence            999998642           456889999999998 999984 33   342211    10 11122 4578 99999999


Q ss_pred             HHHHcCCcEEEEeCCcccCC
Q 025456          217 YIRKSGINYTIIRPGGLRNE  236 (252)
Q Consensus       217 ~~~~~gi~~~~lrPg~i~~~  236 (252)
                      ++++.+++++++|||.+++.
T Consensus       139 ~~~~~~i~~~~lrp~~~~~~  158 (307)
T 2gas_A          139 VIEAEGVPYTYLCCHAFTGY  158 (307)
T ss_dssp             HHHHHTCCBEEEECCEETTT
T ss_pred             HHHHcCCCeEEEEcceeecc
Confidence            99999999999999988875

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.88  E-value=1.4e-22  Score=172.30  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=117.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch-----hhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-----KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      +++|+||||||+||++++++|+++|++|++++|+.+     +..........+++++.+|++| .+++.+++.+ +|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~l~~~~~~-~d~vi   81 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD-HQRLVDALKQ-VDVVI   81 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSC-HHHHHHHHTT-CSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCC-HHHHHHHHhC-CCEEE
Confidence            578999999999999999999999999999999843     2211110013578999999999 8999999999 99999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCCCCCCcchhccch-hhHHHHHHHHHHHHH
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTLIAKLQAEQYI  218 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~-~~~y~~sK~~~e~~~  218 (252)
                      |+++....       ..|+.++.+++++|++.+ +++||+ |+   ||.....+.    .+..+ ...| .+|..+|+++
T Consensus        82 ~~a~~~~~-------~~~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~~~~----~~~~p~~~~y-~sK~~~e~~~  145 (313)
T 1qyd_A           82 SALAGGVL-------SHHILEQLKLVEAIKEAGNIKRFLP-SE---FGMDPDIME----HALQPGSITF-IDKRKVRRAI  145 (313)
T ss_dssp             ECCCCSSS-------STTTTTHHHHHHHHHHSCCCSEEEC-SC---CSSCTTSCC----CCCSSTTHHH-HHHHHHHHHH
T ss_pred             ECCccccc-------hhhHHHHHHHHHHHHhcCCCceEEe-cC---CcCCccccc----cCCCCCcchH-HHHHHHHHHH
Confidence            99986532       236778999999999998 999985 43   443221110    11122 3567 9999999999


Q ss_pred             HHcCCcEEEEeCCcccC
Q 025456          219 RKSGINYTIIRPGGLRN  235 (252)
Q Consensus       219 ~~~gi~~~~lrPg~i~~  235 (252)
                      ++.|++++++||+.+++
T Consensus       146 ~~~g~~~~ilrp~~~~~  162 (313)
T 1qyd_A          146 EAASIPYTYVSSNMFAG  162 (313)
T ss_dssp             HHTTCCBCEEECCEEHH
T ss_pred             HhcCCCeEEEEeceecc
Confidence            99999999999998765

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.88  E-value=1.3e-22  Score=162.07  Aligned_cols=142  Identities=22%  Similarity=0.237  Sum_probs=114.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi~~ag  144 (252)
                      |+++||||+||||++++++|+ +|++|++++|+.+              .+.+|++| .+++++++++  ++|+||||||
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------~~~~D~~~-~~~~~~~~~~~~~~d~vi~~ag   67 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------DVTVDITN-IDSIKKMYEQVGKVDAIVSATG   67 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------SEECCTTC-HHHHHHHHHHHCCEEEEEECCC
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------ceeeecCC-HHHHHHHHHHhCCCCEEEECCC
Confidence            479999999999999999999 9999999998753              46799999 7777777654  4899999999


Q ss_pred             CCCCC--------CCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHH
Q 025456          145 FQPGW--------DLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ  213 (252)
Q Consensus       145 ~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~  213 (252)
                      .....        ++...+++|+.++.++++++.+.   + ++||++||...+..            ......|+.+|.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~------------~~~~~~Y~~sK~~  134 (202)
T 3d7l_A           68 SATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDP------------IVQGASAAMANGA  134 (202)
T ss_dssp             CCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSC------------CTTCHHHHHHHHH
T ss_pred             CCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCC------------CCccHHHHHHHHH
Confidence            65422        12345689999999999999765   4 69999999854321            1235789999999


Q ss_pred             HHHHHHH------cCCcEEEEeCCcccCCC
Q 025456          214 AEQYIRK------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       214 ~e~~~~~------~gi~~~~lrPg~i~~~~  237 (252)
                      .|.+++.      .|++++++|||.++++.
T Consensus       135 ~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~  164 (202)
T 3d7l_A          135 VTAFAKSAAIEMPRGIRINTVSPNVLEESW  164 (202)
T ss_dssp             HHHHHHHHTTSCSTTCEEEEEEECCBGGGH
T ss_pred             HHHHHHHHHHHccCCeEEEEEecCccCCch
Confidence            9988763      38999999999999874

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.88  E-value=8.7e-22  Score=170.23  Aligned_cols=164  Identities=18%  Similarity=0.193  Sum_probs=125.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh----------ccccCCCCeEEEEeeCCCChHHHHHH
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----------TLSKDNPSLQIVKADVTEGSAKLSEA  131 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~----------~~~~~~~~~~~i~~Dl~d~~~~~~~~  131 (252)
                      .++++|+++||||+|+||++++++|+++|++|++++|+.+..++          .+.....++.++.+|++| .+++.++
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~  119 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD-EQQISAA  119 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHH
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHH
Confidence            45679999999999999999999999999999999998764221          112234578899999999 7776666


Q ss_pred             Hc------CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCC
Q 025456          132 IG------DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQI  193 (252)
Q Consensus       132 ~~------~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~  193 (252)
                      ++      +++|+||||||+....        +++..+++|+.|++++++++    ++.+.++||++||...+...    
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~----  195 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV----  195 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG----
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC----
Confidence            54      1399999999975422        23456899999999999988    44566799999998654321    


Q ss_pred             CCcchhccchhhHHHHHHHHHHHHHH----H--cCCcEEEEeCCc-ccCC
Q 025456          194 LNPAYIFLNVFGLTLIAKLQAEQYIR----K--SGINYTIIRPGG-LRNE  236 (252)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~----~--~gi~~~~lrPg~-i~~~  236 (252)
                            ....+..|..+|++.+.+.+    +  .|+++++|.||. +.++
T Consensus       196 ------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~  239 (346)
T 3kvo_A          196 ------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA  239 (346)
T ss_dssp             ------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH
Confidence                  01235789999999887664    2  489999999996 5553

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.88  E-value=1.3e-22  Score=171.66  Aligned_cols=163  Identities=12%  Similarity=0.161  Sum_probs=122.8

Q ss_pred             cCCCcEEEEEcCCCh--HHHHHHHHHHHCCCeEEEeecCchhhhhc--cccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           63 SVKQKKIFVAGATGS--SGKRIVEQLLAKGFAVKAGVRDLDKAKTT--LSKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~--iG~~l~~~L~~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .+++|+++||||+|+  ||++++++|+++|++|++++|+....+..  +.....++.++.+|++| .++++++++     
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  106 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD-AASIDAVFETLEKK  106 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHh
Confidence            467899999999976  99999999999999999999985432211  11122468899999999 777776654     


Q ss_pred             -CCCcEEEEcCCCCC----C--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcch
Q 025456          134 -DDSEAVVCATGFQP----G--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       134 -~~~d~vi~~ag~~~----~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                       +++|+||||||+..    .        .+++..+++|+.++.++++++...  ..++||++||...+..          
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~----------  176 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKV----------  176 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSB----------
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccC----------
Confidence             14999999999763    1        134456899999999999998653  2359999999864421          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ...+..|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       177 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~  221 (293)
T 3grk_A          177 --MPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAA  221 (293)
T ss_dssp             --CTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC---
T ss_pred             --CCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhh
Confidence              1235789999999987764       3589999999999999764

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.88  E-value=5.7e-23  Score=176.50  Aligned_cols=160  Identities=19%  Similarity=0.237  Sum_probs=122.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh---ccc------cCCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLS------KDNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~------~~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      +|+|+||||+||||++++++|+++|++|++++|+....+.   .+.      ....++.++.+|++| .+++.+++..  
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERVT   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCC-HHHHHHHHHHHh
Confidence            6899999999999999999999999999888876543321   111      113578999999999 8888887763  


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||||+....        +++..+++|+.|+.++++++    ++.+.++||++||...+..            
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~------------  148 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG------------  148 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSC------------
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccC------------
Confidence              499999999975321        24456889999999999885    4556789999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ......|..+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       149 ~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~  193 (327)
T 1jtv_A          149 LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFM  193 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC---
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHH
Confidence            1124689999999987764       3699999999999999864

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.88  E-value=2.7e-22  Score=167.15  Aligned_cols=163  Identities=15%  Similarity=0.172  Sum_probs=123.4

Q ss_pred             cCCCcEEEEEcCCCh--HHHHHHHHHHHCCCeEEEeecCchhhh---hccccC-CCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           63 SVKQKKIFVAGATGS--SGKRIVEQLLAKGFAVKAGVRDLDKAK---TTLSKD-NPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~--iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~~~~-~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      ++++|+++||||+|+  ||++++++|+++|++|++++|+....+   +..... ..++.++.+|++| .++++++++.  
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~   82 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN-DAEIETCFASIK   82 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS-SHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC-HHHHHHHHHHHH
Confidence            456899999999976  999999999999999999999864322   222212 2379999999999 6666655541  


Q ss_pred             ----CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCc
Q 025456          135 ----DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                          ++|+||||||....            .++...+++|+.++.++++++...-  .++||++||...+..        
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~--------  154 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELV--------  154 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC--------
T ss_pred             HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccccc--------
Confidence                49999999997541            1233457899999999999986542  258999999854321        


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                          ...+..|+.+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       155 ----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  199 (266)
T 3oig_A          155 ----MPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSA  199 (266)
T ss_dssp             ----CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGG
T ss_pred             ----CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccc
Confidence                2235789999999987764       3589999999999998653

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.88  E-value=2.3e-22  Score=169.39  Aligned_cols=162  Identities=14%  Similarity=0.175  Sum_probs=122.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .+++++++||||+||||++++++|+++|++|++++|+.+..+.....    ...++.++.+|++| .+++.+++.     
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED-MTFAEQFVAQAGKL  103 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC-HHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999998765442211    12368899999999 766666554     


Q ss_pred             -CCCcEEEEc-CCCCCCC-------CCCCcceehHHHHHHHHHHHHhc---CCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          134 -DDSEAVVCA-TGFQPGW-------DLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       134 -~~~d~vi~~-ag~~~~~-------~~~~~~~~n~~g~~~ll~~~~~~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                       +++|+|||| +|.....       +++..+++|+.|+.++++++...   +.++||++||...+..            .
T Consensus       104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~------------~  171 (286)
T 1xu9_A          104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVA------------Y  171 (286)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSC------------C
T ss_pred             cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccC------------C
Confidence             139999999 5654321       12345789999999998887431   2369999999854321            1


Q ss_pred             chhhHHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|+.+|++.+.+.+         ..++++++++||.+.++.
T Consensus       172 ~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~  216 (286)
T 1xu9_A          172 PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET  216 (286)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh
Confidence            235789999999887653         248999999999998864

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.88  E-value=1.5e-22  Score=166.76  Aligned_cols=159  Identities=19%  Similarity=0.200  Sum_probs=107.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHH---HHHHHcC--CCc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK---LSEAIGD--DSE  137 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~---~~~~~~~--~~d  137 (252)
                      ++++|+++||||+||||++++++|++ |++|++++|+.+..+....  ..++.++.+|+++ .+.   +.+.+..  ++|
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~--~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~id   77 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE--IEGVEPIESDIVK-EVLEEGGVDKLKNLDHVD   77 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT--STTEEEEECCHHH-HHHTSSSCGGGTTCSCCS
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh--hcCCcceecccch-HHHHHHHHHHHHhcCCCC
Confidence            34689999999999999999999988 9999999999877655432  3568999999988 432   1122221  499


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      +||||||+....        +++..+++|+.++.++++++    ++.+ ++||++||...+...            ....
T Consensus        78 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~------------~~~~  144 (245)
T 3e9n_A           78 TLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPH------------PGNT  144 (245)
T ss_dssp             EEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC----------------------CH
T ss_pred             EEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCC------------CCch
Confidence            999999975432        24456789999988887776    3445 799999998765421            2357


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|++.+.+.+       ..|+++++++||.+.++..
T Consensus       145 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~  184 (245)
T 3e9n_A          145 IYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPML  184 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchh
Confidence            89999999987764       3689999999999999864

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.88  E-value=1.2e-22  Score=169.56  Aligned_cols=164  Identities=15%  Similarity=0.189  Sum_probs=121.3

Q ss_pred             ccCCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCchhhh---hccccCCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           62 VSVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKAK---TTLSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        62 ~~~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      ...++|+|+||||+  ||||++++++|+++|++|++++|+....+   +... ...++.++.+|++| .+++.++++.  
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dv~~-~~~v~~~~~~~~   87 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAA-EFGSELVFPCDVAD-DAQIDALFASLK   87 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHH-HTTCCCEEECCTTC-HHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHH-HcCCcEEEECCCCC-HHHHHHHHHHHH
Confidence            45678999999999  99999999999999999999999853322   1111 22458899999999 7777766642  


Q ss_pred             ----CCcEEEEcCCCCCC----C---------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCC
Q 025456          135 ----DSEAVVCATGFQPG----W---------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~----~---------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                          ++|+||||||+...    .         +++..+++|+.++.++++++...  ..++||++||...+..       
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------  160 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERA-------  160 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-------
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccC-------
Confidence                48999999997542    1         23345789999999999998654  2358999999854321       


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                           ...+..|+.+|++.+.+.+       ..|+++++|+||.+.++...
T Consensus       161 -----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~  206 (271)
T 3ek2_A          161 -----IPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAAS  206 (271)
T ss_dssp             -----CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----C
T ss_pred             -----CCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhh
Confidence                 2235789999999987764       35899999999999997643

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.88  E-value=1.2e-22  Score=168.81  Aligned_cols=162  Identities=14%  Similarity=0.162  Sum_probs=123.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHH---CCCeEEEeecCchhhhhcccc-----CCCCeEEEEeeCCCChHHHHHHHcC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLA---KGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~i~~Dl~d~~~~~~~~~~~  134 (252)
                      ++++|+++||||+|+||++++++|++   +|++|++++|+.+..++....     ...++.++.+|++| .+++.+++..
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~   81 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT-EAGVQRLLSA   81 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS-HHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC-HHHHHHHHHH
Confidence            35689999999999999999999999   899999999998765443211     13468899999999 7766655421


Q ss_pred             --------CCc--EEEEcCCCCCC-----------CCCCCcceehHHHHHHHHHHHHhc------CCCEEEEEccceeec
Q 025456          135 --------DSE--AVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEACRKR------GVNRFILISSILVNG  187 (252)
Q Consensus       135 --------~~d--~vi~~ag~~~~-----------~~~~~~~~~n~~g~~~ll~~~~~~------~~~~~v~~SS~~v~~  187 (252)
                              ++|  +||||||+...           .+++..+++|+.|+.++++++...      +.++||++||...+.
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~  161 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence                    378  99999997431           123456789999999999998532      336899999986542


Q ss_pred             cCCCCCCCcchhccchhhHHHHHHHHHHHHHHH-----cCCcEEEEeCCcccCCC
Q 025456          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-----SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-----~gi~~~~lrPg~i~~~~  237 (252)
                      .            ......|+.+|++.+.+.+.     .++++++|.||.+.++.
T Consensus       162 ~------------~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~  204 (259)
T 1oaa_A          162 P------------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDM  204 (259)
T ss_dssp             C------------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHH
T ss_pred             C------------CCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcch
Confidence            1            12357899999999987652     25999999999998864

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.87  E-value=2.4e-22  Score=166.22  Aligned_cols=163  Identities=20%  Similarity=0.204  Sum_probs=123.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-ecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++|+++||||+|+||++++++|+++|++|+++ .|+.+..++.   +.....++.++.+|++| .+++++.+..     
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   83 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES-LHGVEALYSSLDNEL   83 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCC-HHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999886 4555444332   22234578899999999 6666555431     


Q ss_pred             -------CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 -------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 -------~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                             ++|+||||||+....        +++..+++|+.++.++++++...  +.++||++||...+..         
T Consensus        84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~---------  154 (255)
T 3icc_A           84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRIS---------  154 (255)
T ss_dssp             HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSC---------
T ss_pred             cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccC---------
Confidence                   399999999975422        23455789999999999998654  3358999999854321         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                         ...+..|+.+|++.+.+.+       ..|+++++++||.+.++...
T Consensus       155 ---~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~  200 (255)
T 3icc_A          155 ---LPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNA  200 (255)
T ss_dssp             ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSST
T ss_pred             ---CCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchh
Confidence               1235789999999987664       35899999999999998643

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.87  E-value=5.3e-22  Score=164.20  Aligned_cols=152  Identities=15%  Similarity=0.119  Sum_probs=118.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      .++|+|+||||+|+||++++++|+++|++|++++|+.+...         ...+.+|++| .+++.++++.      ++|
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~---------~~~~~~d~~d-~~~v~~~~~~~~~~~g~iD   89 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA---------DHSFTIKDSG-EEEIKSVIEKINSKSIKVD   89 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS---------SEEEECSCSS-HHHHHHHHHHHHTTTCCEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc---------ccceEEEeCC-HHHHHHHHHHHHHHcCCCC
Confidence            35799999999999999999999999999999999875432         2456789999 7776665542      489


Q ss_pred             EEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          138 AVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       138 ~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      +||||||+....         +++..+++|+.|+.++++++...-  .++||++||...+..            ......
T Consensus        90 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~~~  157 (251)
T 3orf_A           90 TFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNR------------TSGMIA  157 (251)
T ss_dssp             EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CTTBHH
T ss_pred             EEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccC------------CCCCch
Confidence            999999974321         234567899999999999986531  258999999865421            233578


Q ss_pred             HHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          207 TLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       207 y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      |+.+|++.+.+.+         ..|+++++|+||.+.++.
T Consensus       158 Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~  197 (251)
T 3orf_A          158 YGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT  197 (251)
T ss_dssp             HHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc
Confidence            9999999998764         257999999999998864

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.87  E-value=5.5e-22  Score=168.20  Aligned_cols=147  Identities=24%  Similarity=0.326  Sum_probs=113.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh------hhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK------AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      +++|+||||||+||++++++|+++|++|++++|+...      ..........+++++.+|++| .+++.+++.+ +|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d-~~~l~~~~~~-~d~v   81 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDD-HASLVEAVKN-VDVV   81 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTC-HHHHHHHHHT-CSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCC-HHHHHHHHcC-CCEE
Confidence            6789999999999999999999999999999998532      111100013578999999999 8999999999 9999


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCCCCCCcchhccch-hhHHHHHHHHHHHH
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTLIAKLQAEQY  217 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~-~~~y~~sK~~~e~~  217 (252)
                      ||+++...           +.++.+++++|++++ +++||+ |+   ||....    + ..+..+ ...| .+|..+|++
T Consensus        82 i~~a~~~~-----------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~----~-~~~~~p~~~~y-~sK~~~e~~  140 (308)
T 1qyc_A           82 ISTVGSLQ-----------IESQVNIIKAIKEVGTVKRFFP-SE---FGNDVD----N-VHAVEPAKSVF-EVKAKVRRA  140 (308)
T ss_dssp             EECCCGGG-----------SGGGHHHHHHHHHHCCCSEEEC-SC---CSSCTT----S-CCCCTTHHHHH-HHHHHHHHH
T ss_pred             EECCcchh-----------hhhHHHHHHHHHhcCCCceEee-cc---cccCcc----c-cccCCcchhHH-HHHHHHHHH
Confidence            99998531           345789999999998 999984 43   342211    1 011122 3567 999999999


Q ss_pred             HHHcCCcEEEEeCCcccC
Q 025456          218 IRKSGINYTIIRPGGLRN  235 (252)
Q Consensus       218 ~~~~gi~~~~lrPg~i~~  235 (252)
                      +++.+++++++||+.+++
T Consensus       141 ~~~~~~~~~~~r~~~~~~  158 (308)
T 1qyc_A          141 IEAEGIPYTYVSSNCFAG  158 (308)
T ss_dssp             HHHHTCCBEEEECCEEHH
T ss_pred             HHhcCCCeEEEEeceecc
Confidence            999999999999998765

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.86  E-value=2.1e-21  Score=161.74  Aligned_cols=166  Identities=18%  Similarity=0.152  Sum_probs=125.5

Q ss_pred             ccCCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCchhh-hh----ccccCCCCeEEEEeeCCCChHHHHHHHcC
Q 025456           62 VSVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD  134 (252)
Q Consensus        62 ~~~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~----~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~  134 (252)
                      .++++|+++||||+  |+||++++++|+++|++|++++|+.... ++    +......++.++++|++| .++++++++.
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~   94 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDS-YESCEKLVKD   94 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTC-HHHHHHHHHH
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCC-HHHHHHHHHH
Confidence            45678999999999  9999999999999999999998876433 21    111124678999999999 7766665542


Q ss_pred             ------CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCc
Q 025456          135 ------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       135 ------~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                            ++|+||||||+....        +++..+++|+.++.++++++    ++.+.++||++||...+....      
T Consensus        95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------  168 (267)
T 3gdg_A           95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANF------  168 (267)
T ss_dssp             HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCS------
T ss_pred             HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCC------
Confidence                  489999999976432        23456799999999998887    555667999999975432110      


Q ss_pred             chhccchhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                          ......|+.+|++.+.+.+.      ..++++++.||.+.++..
T Consensus       169 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~  212 (267)
T 3gdg_A          169 ----PQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLS  212 (267)
T ss_dssp             ----SSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCG
T ss_pred             ----CCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchh
Confidence                12357899999999877652      238999999999988753

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.86  E-value=9.6e-22  Score=167.86  Aligned_cols=147  Identities=19%  Similarity=0.242  Sum_probs=114.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-h-----hhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-D-----KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~-----~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      +++|+||||||+||++++++|+++|++|++++|++ +     +..........+++++.+|++| .+++.+++.+ +|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d-~~~l~~a~~~-~d~v   81 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEE-HEKMVSVLKQ-VDIV   81 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTC-HHHHHHHHTT-CSEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCC-HHHHHHHHcC-CCEE
Confidence            67899999999999999999999999999999986 2     2111100012468999999999 8999999999 9999


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCCCCCCcchhccch-hhHHHHHHHHHHHH
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTLIAKLQAEQY  217 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~-~~~y~~sK~~~e~~  217 (252)
                      ||+++...           +.++.+++++|++.+ +++||+ |+   ||....    + ..+..+ ...| .+|..+|++
T Consensus        82 i~~a~~~~-----------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~----~-~~~~~p~~~~y-~sK~~~e~~  140 (321)
T 3c1o_A           82 ISALPFPM-----------ISSQIHIINAIKAAGNIKRFLP-SD---FGCEED----R-IKPLPPFESVL-EKKRIIRRA  140 (321)
T ss_dssp             EECCCGGG-----------SGGGHHHHHHHHHHCCCCEEEC-SC---CSSCGG----G-CCCCHHHHHHH-HHHHHHHHH
T ss_pred             EECCCccc-----------hhhHHHHHHHHHHhCCccEEec-cc---cccCcc----c-cccCCCcchHH-HHHHHHHHH
Confidence            99998532           456789999999998 999983 33   342111    1 011122 4578 999999999


Q ss_pred             HHHcCCcEEEEeCCcccC
Q 025456          218 IRKSGINYTIIRPGGLRN  235 (252)
Q Consensus       218 ~~~~gi~~~~lrPg~i~~  235 (252)
                      +++.++++++|||+.+++
T Consensus       141 ~~~~~~~~~~lrp~~~~~  158 (321)
T 3c1o_A          141 IEAAALPYTYVSANCFGA  158 (321)
T ss_dssp             HHHHTCCBEEEECCEEHH
T ss_pred             HHHcCCCeEEEEeceecc
Confidence            999999999999998765

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.86  E-value=1.1e-21  Score=161.61  Aligned_cols=156  Identities=17%  Similarity=0.159  Sum_probs=112.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEe-e--cCchhhhhccccCCCCeEEEEeeCCCChHHH-HHH---HcCCCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-V--RDLDKAKTTLSKDNPSLQIVKADVTEGSAKL-SEA---IGDDSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~-~--r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~-~~~---~~~~~d~  138 (252)
                      +|+++||||+|+||++++++|+++|++|+++ +  |+++..++..... .+.++.  |..+ .+.+ +++   +.+ +|+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~-~~~~~~--~~~~-v~~~~~~~~~~~g~-iD~   75 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN-PGTIAL--AEQK-PERLVDATLQHGEA-IDT   75 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS-TTEEEC--CCCC-GGGHHHHHGGGSSC-EEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh-CCCccc--CHHH-HHHHHHHHHHHcCC-CCE
Confidence            4799999999999999999999999999999 6  9877665433212 223322  3333 2222 222   234 999


Q ss_pred             EEEcCCCCCC---C--------CCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          139 VVCATGFQPG---W--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       139 vi~~ag~~~~---~--------~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      ||||||+...   .        +++..+++|+.++.++++++.    +.+.++||++||...+..            ...
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~  143 (244)
T 1zmo_A           76 IVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKP------------LAY  143 (244)
T ss_dssp             EEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC------------CTT
T ss_pred             EEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCC------------CCC
Confidence            9999997543   1        234567899999999888773    556679999999865422            122


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|..+|++.+.+.+       ..|+++++|+||.+.++..
T Consensus       144 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  185 (244)
T 1zmo_A          144 NPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTY  185 (244)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcc
Confidence            4679999999987764       3589999999999998864

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.86  E-value=1.4e-21  Score=161.95  Aligned_cols=155  Identities=19%  Similarity=0.191  Sum_probs=111.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc--cccCCCCeEEEEeeCCCChH----HHHHHHcCCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT--LSKDNPSLQIVKADVTEGSA----KLSEAIGDDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~i~~Dl~d~~~----~~~~~~~~~~d~v  139 (252)
                      ||+++||||+|+||++++++|+++|++|++++|+.++.+..  +.....++..+  |..+ .+    .+.+.+.+ +|+|
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~--d~~~-v~~~~~~~~~~~g~-iD~l   76 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPM--SEQE-PAELIEAVTSAYGQ-VDVL   76 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEEC--CCCS-HHHHHHHHHHHHSC-CCEE
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEE--CHHH-HHHHHHHHHHHhCC-CCEE
Confidence            47899999999999999999999999999999987654332  11112344443  4433 22    22233445 9999


Q ss_pred             EEcCCCC-CC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          140 VCATGFQ-PG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       140 i~~ag~~-~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      |||||+. ..        .+++..+++|+.++.++++++    ++.+.++||++||...+..            ......
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~~~  144 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGP------------WKELST  144 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSC------------CTTCHH
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccC------------CCCchH
Confidence            9999976 32        124456889999999988887    3456679999999854321            123578


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                      |..+|.+.+.+.+       ..|+++++|+||.+.++
T Consensus       145 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~  181 (254)
T 1zmt_A          145 YTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSE  181 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCB
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccc
Confidence            9999999987664       35899999999999544

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.86  E-value=5.8e-22  Score=161.08  Aligned_cols=145  Identities=14%  Similarity=0.147  Sum_probs=114.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi~  141 (252)
                      +++|+++||||+||||++++++|+++|++|++++|+.+                 +|++| .++++++++.  ++|+|||
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----------------~D~~~-~~~v~~~~~~~g~id~lv~   65 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-----------------LDISD-EKSVYHYFETIGAFDHLIV   65 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-----------------CCTTC-HHHHHHHHHHHCSEEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-----------------cCCCC-HHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999999999999988643                 79999 7777776652  4999999


Q ss_pred             cCCCCC-C--------CCCCCcceehHHHHHHHHHHHHhcC--CCEEEEEccceeeccCCCCCCCcchhccchhhHHHHH
Q 025456          142 ATGFQP-G--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       142 ~ag~~~-~--------~~~~~~~~~n~~g~~~ll~~~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~s  210 (252)
                      |||... .        .+++..+++|+.++.++++++...-  .++||++||...+..            ......|+.+
T Consensus        66 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------~~~~~~Y~as  133 (223)
T 3uce_A           66 TAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKV------------VANTYVKAAI  133 (223)
T ss_dssp             CCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSC------------CTTCHHHHHH
T ss_pred             CCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccC------------CCCchHHHHH
Confidence            999752 1        1234557899999999999986541  258999999864422            2235789999


Q ss_pred             HHHHHHHHH----Hc-CCcEEEEeCCcccCCCC
Q 025456          211 KLQAEQYIR----KS-GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       211 K~~~e~~~~----~~-gi~~~~lrPg~i~~~~~  238 (252)
                      |++.+.+.+    +. .+++++++||.+.++..
T Consensus       134 K~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~  166 (223)
T 3uce_A          134 NAAIEATTKVLAKELAPIRVNAISPGLTKTEAY  166 (223)
T ss_dssp             HHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGG
T ss_pred             HHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhh
Confidence            999987764    22 39999999999998754

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.86  E-value=1.1e-21  Score=175.17  Aligned_cols=162  Identities=19%  Similarity=0.111  Sum_probs=122.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh--hhccccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA--KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ..+++++++||||+|+||++++++|+++|++|++++|+....  .+...  ..++.++.+|++| .+++.+++..     
T Consensus       209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~--~~~~~~~~~Dvtd-~~~v~~~~~~~~~~~  285 (454)
T 3u0b_A          209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVAD--KVGGTALTLDVTA-DDAVDKITAHVTEHH  285 (454)
T ss_dssp             STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHH--HHTCEEEECCTTS-TTHHHHHHHHHHHHS
T ss_pred             cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHH--HcCCeEEEEecCC-HHHHHHHHHHHHHHc
Confidence            345789999999999999999999999999999999864322  12111  1246789999999 6666665531     


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc----CCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR----GVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~----~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|+||||||+....        +++..+++|+.|+.++.+++...    +.++||++||...+..            
T Consensus       286 g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g------------  353 (454)
T 3u0b_A          286 GGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAG------------  353 (454)
T ss_dssp             TTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHC------------
T ss_pred             CCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCC------------
Confidence              399999999986532        34456889999999999999765    5679999999864322            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ......|+.+|.+.+.+.+       ..|+++++|.||.+.+++.
T Consensus       354 ~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~  398 (454)
T 3u0b_A          354 NRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMT  398 (454)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC---
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhh
Confidence            1235789999998776654       3589999999999998864

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.86  E-value=1.1e-21  Score=167.85  Aligned_cols=159  Identities=18%  Similarity=0.156  Sum_probs=114.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec---------CchhhhhccccC-CCCeEEEEeeCCCChHHHHHH
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR---------DLDKAKTTLSKD-NPSLQIVKADVTEGSAKLSEA  131 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r---------~~~~~~~~~~~~-~~~~~~i~~Dl~d~~~~~~~~  131 (252)
                      .++++|+++||||+||||++++++|+++|++|++.+|         +.++.++..... .... ...+|++| .+++.+.
T Consensus         5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~-~~~~~~~   82 (319)
T 1gz6_A            5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDS-VEAGEKL   82 (319)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCC-GGGHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCC-HHHHHHH
Confidence            3467899999999999999999999999999999654         444333211110 0111 23579998 5554443


Q ss_pred             H-------cCCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEcccee-eccCCC
Q 025456          132 I-------GDDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILV-NGAAMG  191 (252)
Q Consensus       132 ~-------~~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v-~~~~~~  191 (252)
                      +       .+ +|+||||||+....        +++..+++|+.|++++++++    ++.+.++||++||... ++.   
T Consensus        83 ~~~~~~~~g~-iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~---  158 (319)
T 1gz6_A           83 VKTALDTFGR-IDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN---  158 (319)
T ss_dssp             HHHHHHHTSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC---
T ss_pred             HHHHHHHcCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC---
Confidence            3       34 99999999975432        24456889999998888887    4556679999999743 221   


Q ss_pred             CCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          192 QILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                                ..+..|+.+|++.+.+.+       ..|+++++|+||.+ ++.
T Consensus       159 ----------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~  200 (319)
T 1gz6_A          159 ----------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRM  200 (319)
T ss_dssp             ----------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STT
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccc
Confidence                      125789999999987664       25899999999987 543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.86  E-value=1.6e-21  Score=166.36  Aligned_cols=147  Identities=24%  Similarity=0.307  Sum_probs=113.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc-cCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +++|+||||||+||++++++|+++|++|++++|+++.....+. ....+++++.+|++| .+++.+++.+ +|+|||+++
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d-~~~l~~a~~~-~d~vi~~a~   88 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDE-HEKLVELMKK-VDVVISALA   88 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTC-HHHHHHHHTT-CSEEEECCC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCC-HHHHHHHHcC-CCEEEECCc
Confidence            4689999999999999999999999999999998752111110 012468999999999 8999999999 999999998


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCCCCCCcchhccch-hhHHHHHHHHHHHHHHHcC
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTLIAKLQAEQYIRKSG  222 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~-~~~y~~sK~~~e~~~~~~g  222 (252)
                      ...           +.++.+++++|++.+ +++||+ |+   ||....    + ..+..+ ...| .+|..+|+++++.+
T Consensus        89 ~~~-----------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~----~-~~~~~p~~~~y-~sK~~~e~~~~~~~  147 (318)
T 2r6j_A           89 FPQ-----------ILDQFKILEAIKVAGNIKRFLP-SD---FGVEED----R-INALPPFEALI-ERKRMIRRAIEEAN  147 (318)
T ss_dssp             GGG-----------STTHHHHHHHHHHHCCCCEEEC-SC---CSSCTT----T-CCCCHHHHHHH-HHHHHHHHHHHHTT
T ss_pred             hhh-----------hHHHHHHHHHHHhcCCCCEEEe-ec---cccCcc----c-ccCCCCcchhH-HHHHHHHHHHHhcC
Confidence            531           346789999999998 999985 43   342211    1 011122 3567 99999999999999


Q ss_pred             CcEEEEeCCcccC
Q 025456          223 INYTIIRPGGLRN  235 (252)
Q Consensus       223 i~~~~lrPg~i~~  235 (252)
                      ++++++||+.+++
T Consensus       148 ~~~~~lr~~~~~~  160 (318)
T 2r6j_A          148 IPYTYVSANCFAS  160 (318)
T ss_dssp             CCBEEEECCEEHH
T ss_pred             CCeEEEEcceehh
Confidence            9999999987655

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.85  E-value=3.3e-21  Score=163.03  Aligned_cols=153  Identities=15%  Similarity=0.099  Sum_probs=111.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                      |+|||||||||||++|+++|+++||+|++++|++...         .   +..|     +...+.+.+ +|+|||+|+..
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~---------~---~~~~-----~~~~~~l~~-~d~vihla~~~   62 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG---------R---ITWD-----ELAASGLPS-CDAAVNLAGEN   62 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT---------E---EEHH-----HHHHHCCCS-CSEEEECCCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC---------e---eecc-----hhhHhhccC-CCEEEEeccCc
Confidence            6799999999999999999999999999999976421         1   1112     223345677 99999999743


Q ss_pred             CC---CCC-----CCcceehHHHHHHHHHHHHhcCC--CEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHH
Q 025456          147 PG---WDL-----FAPWKVDNFGTVNLVEACRKRGV--NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQ  216 (252)
Q Consensus       147 ~~---~~~-----~~~~~~n~~g~~~ll~~~~~~~~--~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~  216 (252)
                      ..   ..|     ...++.|+.++.++++++++.+.  .+||++||.++|+.....+..++. +..+...|...+...|.
T Consensus        63 i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~-p~~~~~~~~~~~~~~e~  141 (298)
T 4b4o_A           63 ILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDS-PGGDFDFFSNLVTKWEA  141 (298)
T ss_dssp             SSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTC-CCSCSSHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccC-CccccchhHHHHHHHHH
Confidence            21   111     23467899999999999988765  458899999999987665555433 33444555555555554


Q ss_pred             HH--HHcCCcEEEEeCCcccCCCC
Q 025456          217 YI--RKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       217 ~~--~~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..  ...+++++++||+.++|+..
T Consensus       142 ~~~~~~~~~~~~~~r~~~v~g~~~  165 (298)
T 4b4o_A          142 AARLPGDSTRQVVVRSGVVLGRGG  165 (298)
T ss_dssp             HHCCSSSSSEEEEEEECEEECTTS
T ss_pred             HHHhhccCCceeeeeeeeEEcCCC
Confidence            33  35689999999999999863

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.84  E-value=1.1e-20  Score=170.25  Aligned_cols=159  Identities=21%  Similarity=0.214  Sum_probs=123.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCchhh---h---hccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKA---K---TTLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~---~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .+++|+||||+|+||.+++++|+++|++ |++++|+....   +   +.+.....++.++.+|++| .+++.+++..   
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~i~~  303 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLGGIGD  303 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTSCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHHHHHh
Confidence            4789999999999999999999999985 99999986421   1   1122234578999999999 8888888765   


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                        ++|+||||||+....        ++...+++|+.|+.++.+++++.+.++||++||...+...            ...
T Consensus       304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~------------~g~  371 (486)
T 2fr1_A          304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGA------------PGL  371 (486)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCC------------TTC
T ss_pred             cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCC------------CCC
Confidence              369999999976432        2334578999999999999998888999999997543211            123


Q ss_pred             hHHHHHHHHHHHHHH---HcCCcEEEEeCCcccCC
Q 025456          205 GLTLIAKLQAEQYIR---KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~---~~gi~~~~lrPg~i~~~  236 (252)
                      ..|+.+|...+.+.+   ..|+++++|+||.+.+.
T Consensus       372 ~~Yaaaka~l~~la~~~~~~gi~v~~i~pG~~~~~  406 (486)
T 2fr1_A          372 GGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGS  406 (486)
T ss_dssp             TTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC--
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeEEEEECCeeCCC
Confidence            668899998886653   56999999999998875

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.83  E-value=3.3e-20  Score=167.88  Aligned_cols=159  Identities=19%  Similarity=0.207  Sum_probs=124.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhh---h---hccccCCCCeEEEEeeCCCChHHHHHHHcC-CC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKA---K---TTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~---~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~  136 (252)
                      .+++|+||||+|+||.+++++|+++|+ +|++++|+....   .   +.+.....++.++.+|++| .+++.+++.+ ++
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~~~l  336 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE-RDALAALVTAYPP  336 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC-HHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHhcCCC
Confidence            478999999999999999999999998 588889986421   1   1222234578999999999 8888888753 59


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc-CCCEEEEEcccee-eccCCCCCCCcchhccchhhH
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILV-NGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v-~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      |+||||||+....        +++..+++|+.|+.++.++++.. +.++||++||... ++.             .....
T Consensus       337 d~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~-------------~g~~~  403 (511)
T 2z5l_A          337 NAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGN-------------AGQGA  403 (511)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCC-------------TTBHH
T ss_pred             cEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCC-------------CCCHH
Confidence            9999999976532        23345789999999999998876 7789999999743 221             12478


Q ss_pred             HHHHHHHHHHHHH---HcCCcEEEEeCCcc-cCCC
Q 025456          207 TLIAKLQAEQYIR---KSGINYTIIRPGGL-RNEP  237 (252)
Q Consensus       207 y~~sK~~~e~~~~---~~gi~~~~lrPg~i-~~~~  237 (252)
                      |+.+|...+.+.+   ..|+++++|+||.+ .+++
T Consensus       404 YaaaKa~ld~la~~~~~~gi~v~sv~pG~~~~tgm  438 (511)
T 2z5l_A          404 YAAANAALDALAERRRAAGLPATSVAWGLWGGGGM  438 (511)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCEEEEECCBCSTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEECCcccCCcc
Confidence            9999999998765   46999999999988 4443

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.82  E-value=1.4e-19  Score=162.83  Aligned_cols=160  Identities=18%  Similarity=0.161  Sum_probs=125.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhh---h---hccccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKA---K---TTLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~---~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      ++++++||||+|+||.+++++|+++|+ +|+++.|+....   +   +.+.....++.++.+|++| .+++.+++..   
T Consensus       238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~i~~  316 (496)
T 3mje_A          238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAAD-REALAALLAELPE  316 (496)
T ss_dssp             CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTCCT
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence            358999999999999999999999998 788888874321   1   1222245679999999999 8888888753   


Q ss_pred             --CCcEEEEcCCCC-CCC--------CCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          135 --DSEAVVCATGFQ-PGW--------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       135 --~~d~vi~~ag~~-~~~--------~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                        ++|+||||||+. ...        +++..+++|+.|+.++.++++..+.++||++||...+-..            ..
T Consensus       317 ~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~------------~g  384 (496)
T 3mje_A          317 DAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGS------------GG  384 (496)
T ss_dssp             TSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTC------------TT
T ss_pred             hCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCC------------CC
Confidence              489999999986 321        2335578999999999999998888899999997543211            23


Q ss_pred             hhHHHHHHHHHHHHHH---HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR---KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~---~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|+.+|...+.+.+   ..|+++++|.||.+.+.+
T Consensus       385 ~~~YaAaKa~ldala~~~~~~Gi~v~sV~pG~w~~~g  421 (496)
T 3mje_A          385 QPGYAAANAYLDALAEHRRSLGLTASSVAWGTWGEVG  421 (496)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCCEEEEECEESSSC
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCeEEEEECCcccCCc
Confidence            4789999999987764   479999999999886644

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.80  E-value=5.1e-19  Score=160.63  Aligned_cols=161  Identities=12%  Similarity=0.075  Sum_probs=123.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEe-ecCchh-------------hhh---ccccCCCCeEEEEeeCCCChH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAG-VRDLDK-------------AKT---TLSKDNPSLQIVKADVTEGSA  126 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~-~r~~~~-------------~~~---~~~~~~~~~~~i~~Dl~d~~~  126 (252)
                      .+++++||||+|+||.+++++|+++|++ |+++ .|+...             .++   .+.....++.++.+|++| .+
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd-~~  328 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD-AE  328 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS-HH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC-HH
Confidence            5799999999999999999999999987 6666 787421             111   122234578999999999 88


Q ss_pred             HHHHHHcC-----CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhcC-----CCEEEEEccceeecc
Q 025456          127 KLSEAIGD-----DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRG-----VNRFILISSILVNGA  188 (252)
Q Consensus       127 ~~~~~~~~-----~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~~-----~~~~v~~SS~~v~~~  188 (252)
                      ++.+++..     ++|+||||||+....        +++..+++|+.|+.++.+++....     .++||++||...+-.
T Consensus       329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g  408 (525)
T 3qp9_A          329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG  408 (525)
T ss_dssp             HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC
T ss_pred             HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC
Confidence            88887753     489999999986532        233557899999999999997654     689999999854321


Q ss_pred             CCCCCCCcchhccchhhHHHHHHHHHHHHHH---HcCCcEEEEeCCcccCCCC
Q 025456          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIR---KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~---~~gi~~~~lrPg~i~~~~~  238 (252)
                      .            .....|+.+|...+.+.+   ..|+++++|.||.+.+++.
T Consensus       409 ~------------~g~~~YaaaKa~l~~lA~~~~~~gi~v~sI~pG~~~tgm~  449 (525)
T 3qp9_A          409 G------------AGQGAYAAGTAFLDALAGQHRADGPTVTSVAWSPWEGSRV  449 (525)
T ss_dssp             C------------TTCHHHHHHHHHHHHHHTSCCSSCCEEEEEEECCBTTSGG
T ss_pred             C------------CCCHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccccc
Confidence            1            235789999999998875   3589999999999966553

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.80  E-value=2e-19  Score=166.32  Aligned_cols=158  Identities=16%  Similarity=0.100  Sum_probs=109.8

Q ss_pred             hcccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec---------Cchhhhhc---cccCCCCeEEEEeeCCCChHH
Q 025456           60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR---------DLDKAKTT---LSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        60 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r---------~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      ...++++|+++||||+|+||++++++|+++|++|++++|         +.+..+..   +......   +.+|++| .++
T Consensus        13 ~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~D~~d-~~~   88 (613)
T 3oml_A           13 GKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE---AVADYNS-VID   88 (613)
T ss_dssp             --CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCC---EEECCCC-GGG
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe---EEEEeCC-HHH
Confidence            335678999999999999999999999999999999987         33322221   1111222   2479998 666


Q ss_pred             HHHHHcC------CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccC
Q 025456          128 LSEAIGD------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAA  189 (252)
Q Consensus       128 ~~~~~~~------~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~  189 (252)
                      +.+++..      ++|+||||||+....        +|+..+++|+.|++++++++    ++.+.++||++||...+.. 
T Consensus        89 ~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~-  167 (613)
T 3oml_A           89 GAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYG-  167 (613)
T ss_dssp             HHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHC-
T ss_pred             HHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC-
Confidence            6666542      499999999976432        34456889999999998887    5566679999999754321 


Q ss_pred             CCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcc
Q 025456          190 MGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGL  233 (252)
Q Consensus       190 ~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i  233 (252)
                                 ......|+.+|++.+.+.+       +.||++++|.||.+
T Consensus       168 -----------~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~  207 (613)
T 3oml_A          168 -----------NFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA  207 (613)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--
T ss_pred             -----------CCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC
Confidence                       1235789999999987664       35899999999975

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.79  E-value=2.5e-19  Score=156.76  Aligned_cols=161  Identities=14%  Similarity=0.050  Sum_probs=113.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHH-CCCeEEEeecCchhhh---------------hccccCCCCeEEEEeeCCCChHHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAK---------------TTLSKDNPSLQIVKADVTEGSAKL  128 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~~~~---------------~~~~~~~~~~~~i~~Dl~d~~~~~  128 (252)
                      .+|++|||||+++||+++++.|++ +|++|++++|+.+..+               +.+......+..+.+|++| .+++
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd-~~~v  138 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFS-DAAR  138 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS-HHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCC-HHHH
Confidence            489999999999999999999999 9999999998765432               1122234568889999999 6554


Q ss_pred             HHHHc-------CCCcEEEEcCCCC-------------CCC-----------------------------CCCCcceehH
Q 025456          129 SEAIG-------DDSEAVVCATGFQ-------------PGW-----------------------------DLFAPWKVDN  159 (252)
Q Consensus       129 ~~~~~-------~~~d~vi~~ag~~-------------~~~-----------------------------~~~~~~~~n~  159 (252)
                      .+++.       +++|+||||||..             ...                             +|+..+++|.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~  218 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG  218 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence            44331       3499999999862             100                             1112344555


Q ss_pred             HHHH-HHHHHHHhcC----CCEEEEEccceeeccCCCCCCCcchhccchh--hHHHHHHHHHHHHHH-------HcCCcE
Q 025456          160 FGTV-NLVEACRKRG----VNRFILISSILVNGAAMGQILNPAYIFLNVF--GLTLIAKLQAEQYIR-------KSGINY  225 (252)
Q Consensus       160 ~g~~-~ll~~~~~~~----~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~--~~y~~sK~~~e~~~~-------~~gi~~  225 (252)
                      .+.+ .+++++....    -+++|++||.....            +...+  ..|+.+|++.+.+.+       ..||++
T Consensus       219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~------------~~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRV  286 (422)
T 3s8m_A          219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEI------------TWPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGA  286 (422)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGG------------GHHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhc------------cCCCccchHHHHHHHHHHHHHHHHHHHhCccCEEE
Confidence            5554 6666654322    25899999984321            11123  789999999987764       369999


Q ss_pred             EEEeCCcccCCCC
Q 025456          226 TIIRPGGLRNEPP  238 (252)
Q Consensus       226 ~~lrPg~i~~~~~  238 (252)
                      ++|.||.+.|+..
T Consensus       287 NaVaPG~i~T~~~  299 (422)
T 3s8m_A          287 NVAVLKSVVTQAS  299 (422)
T ss_dssp             EEEEECCCCCTTG
T ss_pred             EEEEcCCCcChhh
Confidence            9999999999864

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.79  E-value=6.4e-19  Score=149.06  Aligned_cols=163  Identities=18%  Similarity=0.193  Sum_probs=110.7

Q ss_pred             cCCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCch-----------hhhhccccC-CC----CeEEEEeeC---
Q 025456           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD-----------KAKTTLSKD-NP----SLQIVKADV---  121 (252)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~-----------~~~~~~~~~-~~----~~~~i~~Dl---  121 (252)
                      ++++|+++||||+  ||||++++++|+++|++|++++|+++           +.++. ... ..    ....+.+|+   
T Consensus         5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   83 (297)
T 1d7o_A            5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTTCC
T ss_pred             ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhh-hhhccccccccccccccceecc
Confidence            4568999999999  99999999999999999999886531           11111 101 01    124445543   


Q ss_pred             -----C----C-------ChHHHH-------HHHcCCCcEEEEcCCCCC--C--------CCCCCcceehHHHHHHHHHH
Q 025456          122 -----T----E-------GSAKLS-------EAIGDDSEAVVCATGFQP--G--------WDLFAPWKVDNFGTVNLVEA  168 (252)
Q Consensus       122 -----~----d-------~~~~~~-------~~~~~~~d~vi~~ag~~~--~--------~~~~~~~~~n~~g~~~ll~~  168 (252)
                           +    |       ..++++       +.+++ +|+||||||+..  .        .+++..+++|+.|+.+++++
T Consensus        84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~  162 (297)
T 1d7o_A           84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGS-IDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH  162 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSC-EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCC-CCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence                 1    1       011222       23345 999999998632  1        12445688999999999999


Q ss_pred             HHhc--CCCEEEEEccceeeccCCCCCCCcchhccchh-hHHHHHHHHHHHHHH--------HcCCcEEEEeCCcccCCC
Q 025456          169 CRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVF-GLTLIAKLQAEQYIR--------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       169 ~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~-~~y~~sK~~~e~~~~--------~~gi~~~~lrPg~i~~~~  237 (252)
                      +...  ..++||++||...+...            ..+ ..|+.+|++.+.+.+        +.|+++++|+||++.|+.
T Consensus       163 ~~~~m~~~g~iv~isS~~~~~~~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~  230 (297)
T 1d7o_A          163 FLPIMNPGGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRA  230 (297)
T ss_dssp             HGGGEEEEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCC
T ss_pred             HHHHhccCceEEEEeccccccCC------------CCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccch
Confidence            9653  12699999997543211            112 469999999887653        269999999999999987


Q ss_pred             CC
Q 025456          238 PT  239 (252)
Q Consensus       238 ~~  239 (252)
                      ..
T Consensus       231 ~~  232 (297)
T 1d7o_A          231 AK  232 (297)
T ss_dssp             SS
T ss_pred             hh
Confidence            43

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.78  E-value=6.3e-19  Score=152.95  Aligned_cols=161  Identities=11%  Similarity=0.018  Sum_probs=114.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHH-CCCeEEEeecCchhhh---------------hccccCCCCeEEEEeeCCCChHH
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAK---------------TTLSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~~~~---------------~~~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      ..+|+++||||+++||+++++.|++ +|++|++++|+.+...               +.+......+..+.+|++| .++
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd-~~~  123 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFS-DEI  123 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS-HHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCC-HHH
Confidence            3589999999999999999999999 9999999988754321               1122234568889999999 665


Q ss_pred             HHHHHc------CCCcEEEEcCCCCC---------------C---------------------------CCCCCcceehH
Q 025456          128 LSEAIG------DDSEAVVCATGFQP---------------G---------------------------WDLFAPWKVDN  159 (252)
Q Consensus       128 ~~~~~~------~~~d~vi~~ag~~~---------------~---------------------------~~~~~~~~~n~  159 (252)
                      +.+++.      +++|++|||||...               .                           .+|+..+++|.
T Consensus       124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~  203 (405)
T 3zu3_A          124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG  203 (405)
T ss_dssp             HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence            555443      14999999998631               0                           11233456777


Q ss_pred             HHHH-HHHHHHHhcC----CCEEEEEccceeeccCCCCCCCcchhccchh--hHHHHHHHHHHHHHH-------Hc-CCc
Q 025456          160 FGTV-NLVEACRKRG----VNRFILISSILVNGAAMGQILNPAYIFLNVF--GLTLIAKLQAEQYIR-------KS-GIN  224 (252)
Q Consensus       160 ~g~~-~ll~~~~~~~----~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~--~~y~~sK~~~e~~~~-------~~-gi~  224 (252)
                      .+.+ .+++++....    -+++|++||......            ...+  ..|+.+|.+.+.+.+       .. |++
T Consensus       204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~------------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIR  271 (405)
T 3zu3_A          204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT------------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGD  271 (405)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCE
T ss_pred             hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc------------CCCccchHHHHHHHHHHHHHHHHHHHhCcccCeE
Confidence            7766 5666554221    258999999853211            1123  789999999987664       36 999


Q ss_pred             EEEEeCCcccCCC
Q 025456          225 YTIIRPGGLRNEP  237 (252)
Q Consensus       225 ~~~lrPg~i~~~~  237 (252)
                      ++++.||.+.|+.
T Consensus       272 VNaVaPG~i~T~~  284 (405)
T 3zu3_A          272 ARVSVLKAVVSQA  284 (405)
T ss_dssp             EEEEECCCCCCHH
T ss_pred             EEEEEeCCCcCch
Confidence            9999999998874

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.78  E-value=5.9e-19  Score=162.70  Aligned_cols=160  Identities=19%  Similarity=0.137  Sum_probs=116.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhhhccccCCCCeEEEEeeC-CCChHH----HHHHHcCCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLSKDNPSLQIVKADV-TEGSAK----LSEAIGDDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~i~~Dl-~d~~~~----~~~~~~~~~  136 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+. +...+.+.....++..+.+|+ .+ .+.    +.+.++. +
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~-~~~~~~~~~~~~G~-i  396 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKD-SEAIIKNVIDKYGT-I  396 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHH-HHHHHHHHHHHHSC-C
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHH-HHHHHHHHHHhcCC-C
Confidence            56789999999999999999999999999999988632 222222222234566777888 55 332    2333455 9


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |++|||||+...        .+|+..+++|+.|++++.+++    ++.+-++||++||......            ....
T Consensus       397 DiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~------------~~~~  464 (604)
T 2et6_A          397 DILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYG------------NFGQ  464 (604)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSC------------CTTB
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccC------------CCCC
Confidence            999999997542        235567899999998888776    4455579999999753211            1124


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|+.+|++...+.+       ++||++++|.||. .+++
T Consensus       465 ~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m  503 (604)
T 2et6_A          465 ANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAM  503 (604)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCcc
Confidence            789999998887654       4699999999994 6654

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.77  E-value=5.3e-19  Score=151.81  Aligned_cols=158  Identities=14%  Similarity=0.170  Sum_probs=113.3

Q ss_pred             CcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCc---------hhhhh---cccc---CCCCeEEEEeeCCCCh--H
Q 025456           66 QKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDL---------DKAKT---TLSK---DNPSLQIVKADVTEGS--A  126 (252)
Q Consensus        66 ~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~---------~~~~~---~~~~---~~~~~~~i~~Dl~d~~--~  126 (252)
                      +|+++||||++  +||++++++|+++|++|++.+|++         ++.+.   ....   ....+.++.+|+++ .  +
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~   80 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF-DTAN   80 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTC-SSGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccc-cchh
Confidence            68999999975  999999999999999999776554         22211   1111   12347889999987 4  4


Q ss_pred             ------------------HHHHHHc------CCCcEEEEcCCCCC--C--------CCCCCcceehHHHHHHHHHHHHhc
Q 025456          127 ------------------KLSEAIG------DDSEAVVCATGFQP--G--------WDLFAPWKVDNFGTVNLVEACRKR  172 (252)
Q Consensus       127 ------------------~~~~~~~------~~~d~vi~~ag~~~--~--------~~~~~~~~~n~~g~~~ll~~~~~~  172 (252)
                                        ++.+++.      +++|+||||||+..  .        .+++..+++|+.|+.++++++...
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                              4444332      14999999999632  1        134566899999999999998532


Q ss_pred             ---CCCEEEEEccceeeccCCCCCCCcchhccchhh-HHHHHHHHHHHHHH-------H-cCCcEEEEeCCcccCCC
Q 025456          173 ---GVNRFILISSILVNGAAMGQILNPAYIFLNVFG-LTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       173 ---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~-~y~~sK~~~e~~~~-------~-~gi~~~~lrPg~i~~~~  237 (252)
                         + ++||++||...+..            ...+. .|..+|++.+.+.+       . .|+++++|.||.+.+++
T Consensus       161 m~~~-g~Iv~isS~~~~~~------------~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~~  224 (329)
T 3lt0_A          161 MKPQ-SSIISLTYHASQKV------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRA  224 (329)
T ss_dssp             EEEE-EEEEEEECGGGTSC------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHH
T ss_pred             HhhC-CeEEEEeCccccCC------------CCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeechh
Confidence               2 69999999853321            11233 79999998886653       4 69999999999998875

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.76  E-value=7.6e-19  Score=149.92  Aligned_cols=162  Identities=18%  Similarity=0.231  Sum_probs=109.0

Q ss_pred             cCCCcEEEEEcC--CChHHHHHHHHHHHCCCeEEEeecCch-----------hhhh--ccccCC--CCeEEEEeeC----
Q 025456           63 SVKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDLD-----------KAKT--TLSKDN--PSLQIVKADV----  121 (252)
Q Consensus        63 ~~~~~~vlVtGa--tG~iG~~l~~~L~~~G~~V~~~~r~~~-----------~~~~--~~~~~~--~~~~~i~~Dl----  121 (252)
                      ++++|+++||||  +||||++++++|+++|++|++++|++.           ..+.  .+....  ..+.++.+|+    
T Consensus         6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (315)
T 2o2s_A            6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK   85 (315)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred             cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence            356899999999  899999999999999999999987531           1111  111000  0134444443    


Q ss_pred             --------CC-------ChHHHHH-------HHcCCCcEEEEcCCCCC--C--------CCCCCcceehHHHHHHHHHHH
Q 025456          122 --------TE-------GSAKLSE-------AIGDDSEAVVCATGFQP--G--------WDLFAPWKVDNFGTVNLVEAC  169 (252)
Q Consensus       122 --------~d-------~~~~~~~-------~~~~~~d~vi~~ag~~~--~--------~~~~~~~~~n~~g~~~ll~~~  169 (252)
                              +|       ..+++.+       .+++ +|+||||||+..  .        .+|+..+++|+.|++++++++
T Consensus        86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~-iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~  164 (315)
T 2o2s_A           86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGN-IDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHF  164 (315)
T ss_dssp             TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCS-EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCC-CCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHH
Confidence                    32       0122332       2345 999999999642  1        124456789999999999998


Q ss_pred             Hhc--CCCEEEEEccceeeccCCCCCCCcchhccchh-hHHHHHHHHHHHHHH-------H-cCCcEEEEeCCcccCCC
Q 025456          170 RKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVF-GLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       170 ~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~-~~y~~sK~~~e~~~~-------~-~gi~~~~lrPg~i~~~~  237 (252)
                      ...  ..++||++||...+...            ..+ ..|+.+|++.+.+.+       . .|+++++|+||.+.++.
T Consensus       165 ~~~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~  231 (315)
T 2o2s_A          165 GPIMNEGGSAVTLSYLAAERVV------------PGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRA  231 (315)
T ss_dssp             STTEEEEEEEEEEEEGGGTSCC------------TTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHH
T ss_pred             HHHHhcCCEEEEEecccccccC------------CCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchh
Confidence            543  11699999997543211            112 468999998887653       2 68999999999998864

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.75  E-value=9.3e-19  Score=149.60  Aligned_cols=163  Identities=20%  Similarity=0.220  Sum_probs=96.2

Q ss_pred             cCCCcEEEEEcC--CChHHHHHHHHHHHCCCeEEEeecCc-----------hhhhh--------------ccccCC---C
Q 025456           63 SVKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDL-----------DKAKT--------------TLSKDN---P  112 (252)
Q Consensus        63 ~~~~~~vlVtGa--tG~iG~~l~~~L~~~G~~V~~~~r~~-----------~~~~~--------------~~~~~~---~  112 (252)
                      ++++|+++||||  ++|||++++++|+++|++|++++|++           ++.+.              .+....   .
T Consensus         6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (319)
T 2ptg_A            6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV   85 (319)
T ss_dssp             CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------C
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence            356899999999  89999999999999999999998753           11110              000000   0


Q ss_pred             CeEEEEeeC------------CCC-------hHHHHH-------HHcCCCcEEEEcCCCCC--C--------CCCCCcce
Q 025456          113 SLQIVKADV------------TEG-------SAKLSE-------AIGDDSEAVVCATGFQP--G--------WDLFAPWK  156 (252)
Q Consensus       113 ~~~~i~~Dl------------~d~-------~~~~~~-------~~~~~~d~vi~~ag~~~--~--------~~~~~~~~  156 (252)
                      ...++.+|+            +|.       .+++.+       .+.. +|+||||||+..  .        .+|+..++
T Consensus        86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~-iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~  164 (319)
T 2ptg_A           86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQ-IDILVHSLANGPEVTKPLLQTSRKGYLAAVS  164 (319)
T ss_dssp             CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSC-EEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred             ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCC-CCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence            135555543            220       112332       2345 999999998642  1        12445678


Q ss_pred             ehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchh-hHHHHHHHHHHHHHH-------H-cCCcE
Q 025456          157 VDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVF-GLTLIAKLQAEQYIR-------K-SGINY  225 (252)
Q Consensus       157 ~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~-~~y~~sK~~~e~~~~-------~-~gi~~  225 (252)
                      +|+.|+.++++++...  .-++||++||...+...            ..+ ..|+.+|++.+.+.+       . +|+++
T Consensus       165 vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrv  232 (319)
T 2ptg_A          165 SSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVI------------PGYGGGMSSAKAALESDCRTLAFEAGRARAVRV  232 (319)
T ss_dssp             HHTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------THHHHHHHHHHHHHHHCCEE
T ss_pred             HhhHHHHHHHHHHHHHHhcCceEEEEecccccccc------------CccchhhHHHHHHHHHHHHHHHHHhccccCeeE
Confidence            9999999999998643  11699999998643211            112 468889987776543       2 69999


Q ss_pred             EEEeCCcccCCCC
Q 025456          226 TIIRPGGLRNEPP  238 (252)
Q Consensus       226 ~~lrPg~i~~~~~  238 (252)
                      ++|+||.+.++..
T Consensus       233 n~v~PG~v~T~~~  245 (319)
T 2ptg_A          233 NCISAGPLKSRAA  245 (319)
T ss_dssp             EEEEECCCC----
T ss_pred             EEEeeCCccChhh
Confidence            9999999998753

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.74  E-value=1.5e-18  Score=159.98  Aligned_cols=156  Identities=19%  Similarity=0.124  Sum_probs=109.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc---------hhhhh---ccccCCCCeEEEEeeCCCChHH---
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL---------DKAKT---TLSKDNPSLQIVKADVTEGSAK---  127 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~---------~~~~~---~~~~~~~~~~~i~~Dl~d~~~~---  127 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+.         +..++   .+.....  .. .+|++| .++   
T Consensus         5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~--~~-~~d~~d-~~~~~~   80 (604)
T 2et6_A            5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGG--VA-VADYNN-VLDGDK   80 (604)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTC--EE-EEECCC-TTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCC--eE-EEEcCC-HHHHHH
Confidence            35689999999999999999999999999999988754         22222   1111122  22 357777 322   


Q ss_pred             ----HHHHHcCCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCC
Q 025456          128 ----LSEAIGDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMG  191 (252)
Q Consensus       128 ----~~~~~~~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~  191 (252)
                          +.+.++. +|++|||||+...        .+|+..+++|+.|++++++++    ++.+.++||++||......   
T Consensus        81 ~v~~~~~~~G~-iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~---  156 (604)
T 2et6_A           81 IVETAVKNFGT-VHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYG---  156 (604)
T ss_dssp             HHHHHHHHHSC-CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC---
T ss_pred             HHHHHHHHcCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC---
Confidence                2233445 9999999997542        235567899999998888776    4555579999999753211   


Q ss_pred             CCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          192 QILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                               ......|..+|++...+.+       ++||++++|.|| +.++
T Consensus       157 ---------~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~  198 (604)
T 2et6_A          157 ---------NFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSR  198 (604)
T ss_dssp             ---------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCH
T ss_pred             ---------CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCc
Confidence                     1124689999999887654       469999999997 4443

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.74  E-value=6.9e-18  Score=148.44  Aligned_cols=161  Identities=15%  Similarity=0.034  Sum_probs=111.4

Q ss_pred             CCCcEEEEEcCCChHHHH--HHHHHHHCCCeEEEeecCchhh---------------hhccccCCCCeEEEEeeCCCChH
Q 025456           64 VKQKKIFVAGATGSSGKR--IVEQLLAKGFAVKAGVRDLDKA---------------KTTLSKDNPSLQIVKADVTEGSA  126 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~--l~~~L~~~G~~V~~~~r~~~~~---------------~~~~~~~~~~~~~i~~Dl~d~~~  126 (252)
                      ..+|+++||||+++||++  +++.|+++|++|++++|+....               .+.......++..+.+|++| .+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd-~~  136 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFS-NE  136 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTC-HH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCC-HH
Confidence            468999999999999999  9999999999999999865321               11222234568899999999 66


Q ss_pred             HHHHHHc------CCCcEEEEcCCCCC-------------CC-----------------------------CCCCcceeh
Q 025456          127 KLSEAIG------DDSEAVVCATGFQP-------------GW-----------------------------DLFAPWKVD  158 (252)
Q Consensus       127 ~~~~~~~------~~~d~vi~~ag~~~-------------~~-----------------------------~~~~~~~~n  158 (252)
                      ++.++++      +++|++|||||...             ..                             +++..+++|
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn  216 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM  216 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence            6655543      14999999998741             00                             111223444


Q ss_pred             HHHHH-HHHHHHHhcC----CCEEEEEccceeeccCCCCCCCcchhccchh--hHHHHHHHHHHHHHH-------H-cCC
Q 025456          159 NFGTV-NLVEACRKRG----VNRFILISSILVNGAAMGQILNPAYIFLNVF--GLTLIAKLQAEQYIR-------K-SGI  223 (252)
Q Consensus       159 ~~g~~-~ll~~~~~~~----~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~--~~y~~sK~~~e~~~~-------~-~gi  223 (252)
                      ..+.. .+++++....    -+++|++||.+...            +...+  ..|+.+|++.+.+.+       . .|+
T Consensus       217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~------------~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GI  284 (418)
T 4eue_A          217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPR------------TYKIYREGTIGIAKKDLEDKAKLINEKLNRVIGG  284 (418)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG------------GTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcC------------CCCccccHHHHHHHHHHHHHHHHHHHHhCCccCe
Confidence            44444 5555554332    25899999974321            11124  789999998887653       5 699


Q ss_pred             cEEEEeCCcccCCC
Q 025456          224 NYTIIRPGGLRNEP  237 (252)
Q Consensus       224 ~~~~lrPg~i~~~~  237 (252)
                      +++++.||.+.|+.
T Consensus       285 rVN~V~PG~v~T~~  298 (418)
T 4eue_A          285 RAFVSVNKALVTKA  298 (418)
T ss_dssp             EEEEEECCCCCCHH
T ss_pred             EEEEEECCcCcChh
Confidence            99999999999874

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.71  E-value=2.6e-17  Score=156.07  Aligned_cols=158  Identities=20%  Similarity=0.204  Sum_probs=122.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHH-HCCC-eEEEeecCchh---hhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLL-AKGF-AVKAGVRDLDK---AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~-~~G~-~V~~~~r~~~~---~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      .+++++||||+|+||+++++.|+ ++|+ +|++++|+...   .++.   +...+.++.++.+|++| .+++.+++..  
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd-~~~v~~~~~~~~  607 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVAD-RETLAKVLASIP  607 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTSC
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHH
Confidence            57999999999999999999999 7898 58999998432   2221   22245678999999999 8888887754  


Q ss_pred             ---CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          135 ---DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                         ++|+||||||+....        +|+..+++|+.|++++.+++. ... +||++||...+-..            ..
T Consensus       608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~-~~l-~iV~~SS~ag~~g~------------~g  673 (795)
T 3slk_A          608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELID-PDV-ALVLFSSVSGVLGS------------GG  673 (795)
T ss_dssp             TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSC-TTS-EEEEEEETHHHHTC------------SS
T ss_pred             HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHh-hCC-EEEEEccHHhcCCC------------CC
Confidence               489999999986532        345668999999999999883 334 89999998543211            23


Q ss_pred             hhHHHHHHHHHHHHHH---HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR---KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~---~~gi~~~~lrPg~i~~~~  237 (252)
                      +..|+.+|...+.+.+   ..|+++++|.||.+.+.+
T Consensus       674 ~~~YaAaka~~~alA~~~~~~Gi~v~sI~pG~v~t~g  710 (795)
T 3slk_A          674 QGNYAAANSFLDALAQQRQSRGLPTRSLAWGPWAEHG  710 (795)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCeEEEEECCeECcch
Confidence            5789999988876654   479999999999988764

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.70  E-value=4.4e-17  Score=162.72  Aligned_cols=161  Identities=16%  Similarity=0.097  Sum_probs=118.3

Q ss_pred             ccCCCcEEEEEcCCCh-HHHHHHHHHHHCCCeEEEe-ecCchhhhhc-------cccCCCCeEEEEeeCCCChHHHHHHH
Q 025456           62 VSVKQKKIFVAGATGS-SGKRIVEQLLAKGFAVKAG-VRDLDKAKTT-------LSKDNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~-iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~-------~~~~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      .++++|+++||||+++ ||+++++.|+++|++|+++ .|+.+..++.       +.....++.++.+|++| .+++.+++
T Consensus       671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd-~~sV~alv  749 (1887)
T 2uv8_A          671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGS-KQDVEALI  749 (1887)
T ss_dssp             BCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTC-HHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC-HHHHHHHH
Confidence            3567899999999998 9999999999999999998 4666544321       11123568899999999 77666554


Q ss_pred             c-----------C-CCcEEEEcCCCCCCC-----------CCCCcceehHHHHHHHHHHHHhcC------CCEEEEEccc
Q 025456          133 G-----------D-DSEAVVCATGFQPGW-----------DLFAPWKVDNFGTVNLVEACRKRG------VNRFILISSI  183 (252)
Q Consensus       133 ~-----------~-~~d~vi~~ag~~~~~-----------~~~~~~~~n~~g~~~ll~~~~~~~------~~~~v~~SS~  183 (252)
                      .           + ++|+||||||+....           +++..+++|+.++.+++++++...      .++||++||.
T Consensus       750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~  829 (1887)
T 2uv8_A          750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPN  829 (1887)
T ss_dssp             HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSC
T ss_pred             HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcCh
Confidence            2           1 399999999975432           134567899999999999885332      2589999997


Q ss_pred             eeeccCCCCCCCcchhccchhhHHHHHHHHHHHH-HH----Hc--CCcEEEEeCCccc-CCC
Q 025456          184 LVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY-IR----KS--GINYTIIRPGGLR-NEP  237 (252)
Q Consensus       184 ~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~-~~----~~--gi~~~~lrPg~i~-~~~  237 (252)
                      ..+..              ....|+.+|++.+.+ .+    +.  .|++++|.||++. +++
T Consensus       830 ag~~g--------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m  877 (1887)
T 2uv8_A          830 HGTFG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGL  877 (1887)
T ss_dssp             TTCSS--------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC--
T ss_pred             HhccC--------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccc
Confidence            43211              236799999998887 22    11  2999999999998 554

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.69  E-value=2.6e-18  Score=147.39  Aligned_cols=165  Identities=13%  Similarity=0.128  Sum_probs=114.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecCch--hhhh---ccccCCCCeEEEEeeCCCChHHHHHHHc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLD--KAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIG  133 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~  133 (252)
                      .++|+||||+||||++++..|+++|+       +|+++++...  ....   .+.  +..+.++ .|+.+ .+++.+++.
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~--~~~~~~~-~di~~-~~~~~~a~~   79 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELE--DCAFPLL-AGLEA-TDDPKVAFK   79 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH--TTTCTTE-EEEEE-ESCHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhh--ccccccc-CCeEe-ccChHHHhC
Confidence            46899999999999999999999986       8999888642  1111   111  1112233 67776 566778888


Q ss_pred             CCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcC-CC-EEEEEccce-eeccCCCCCCCcchh-ccchhhHH
Q 025456          134 DDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG-VN-RFILISSIL-VNGAAMGQILNPAYI-FLNVFGLT  207 (252)
Q Consensus       134 ~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~-~~-~~v~~SS~~-v~~~~~~~~~~~~~~-~~~~~~~y  207 (252)
                      + +|+|||+||...  ..++.+.++.|+.++.++++++++.+ .+ +++++|+.. +...     ...... ...+...|
T Consensus        80 ~-~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~-----~~~~~~~~~~p~~~y  153 (327)
T 1y7t_A           80 D-ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNAL-----IAYKNAPGLNPRNFT  153 (327)
T ss_dssp             T-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH-----HHHHTCTTSCGGGEE
T ss_pred             C-CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHH-----HHHHHcCCCChhhee
Confidence            8 999999999754  23345678899999999999999875 54 777777642 0000     000000 12233457


Q ss_pred             HHHHHHHHHHH----HHcCCcEEEEeCCcccCCCCCC
Q 025456          208 LIAKLQAEQYI----RKSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       208 ~~sK~~~e~~~----~~~gi~~~~lrPg~i~~~~~~~  240 (252)
                      +.+|...|++.    +..|++++.+||++++|+....
T Consensus       154 g~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~  190 (327)
T 1y7t_A          154 AMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSST  190 (327)
T ss_dssp             ECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTT
T ss_pred             ccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCCe
Confidence            78898887754    3569999999999999987543

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.68  E-value=6.2e-17  Score=161.35  Aligned_cols=162  Identities=15%  Similarity=0.102  Sum_probs=118.5

Q ss_pred             ccCCCcEEEEEcCCCh-HHHHHHHHHHHCCCeEEEee-cCchhhhh----c---cccCCCCeEEEEeeCCCChHHHHHHH
Q 025456           62 VSVKQKKIFVAGATGS-SGKRIVEQLLAKGFAVKAGV-RDLDKAKT----T---LSKDNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~-iG~~l~~~L~~~G~~V~~~~-r~~~~~~~----~---~~~~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      +++++++++||||+|+ ||++++++|+++|++|++++ |+.+....    +   +.....++.++.+|++| .+++.+++
T Consensus       648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd-~esV~alv  726 (1878)
T 2uv9_A          648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGS-KQDVEALV  726 (1878)
T ss_dssp             BCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTC-HHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCC-HHHHHHHH
Confidence            4567899999999999 99999999999999999885 55544321    1   11124568899999999 77776655


Q ss_pred             c---------C-CCcEEEEcCCCCCCC-----------CCCCcceehHHHHHHHHHHHHh------cCCCEEEEEcccee
Q 025456          133 G---------D-DSEAVVCATGFQPGW-----------DLFAPWKVDNFGTVNLVEACRK------RGVNRFILISSILV  185 (252)
Q Consensus       133 ~---------~-~~d~vi~~ag~~~~~-----------~~~~~~~~n~~g~~~ll~~~~~------~~~~~~v~~SS~~v  185 (252)
                      .         + ++|+||||||+....           +++..+++|+.|+.++++.++.      .+.++||++||...
T Consensus       727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag  806 (1878)
T 2uv9_A          727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHG  806 (1878)
T ss_dssp             HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSS
T ss_pred             HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhh
Confidence            2         1 499999999975322           1345678999999998877432      12358999999753


Q ss_pred             eccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH-------cCCcEEEEeCCccc-CCCC
Q 025456          186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLR-NEPP  238 (252)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~~lrPg~i~-~~~~  238 (252)
                      +..              ....|+.+|++.+.+.+.       .++++++|.||++. +++.
T Consensus       807 ~~g--------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~  853 (1878)
T 2uv9_A          807 TFG--------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLM  853 (1878)
T ss_dssp             SSS--------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSC
T ss_pred             ccC--------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccc
Confidence            211              135799999998876431       13999999999998 7653

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.1e-17  Score=162.54  Aligned_cols=160  Identities=16%  Similarity=0.120  Sum_probs=116.9

Q ss_pred             cCCCcEEEEEcCCCh-HHHHHHHHHHHCCCeEEEe-ecCchhhhhc---c-cc---CCCCeEEEEeeCCCChHHHHHHHc
Q 025456           63 SVKQKKIFVAGATGS-SGKRIVEQLLAKGFAVKAG-VRDLDKAKTT---L-SK---DNPSLQIVKADVTEGSAKLSEAIG  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~-iG~~l~~~L~~~G~~V~~~-~r~~~~~~~~---~-~~---~~~~~~~i~~Dl~d~~~~~~~~~~  133 (252)
                      ++++|+++||||+|+ ||++++++|+++|++|+++ .|+.+...+.   + ..   ...++.++.+|++| .+++.+++.
T Consensus       473 sL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD-~esVeaLVe  551 (1688)
T 2pff_A          473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGS-KQDVEALIE  551 (1688)
T ss_dssp             CCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSS-TTHHHHHHH
T ss_pred             ccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCC-HHHHHHHHH
Confidence            467899999999998 9999999999999999988 5665443321   1 11   13468899999999 666665542


Q ss_pred             -----------C-CCcEEEEcCCCCCCC-----------CCCCcceehHHHHHHHHHHHHhc------CCCEEEEEccce
Q 025456          134 -----------D-DSEAVVCATGFQPGW-----------DLFAPWKVDNFGTVNLVEACRKR------GVNRFILISSIL  184 (252)
Q Consensus       134 -----------~-~~d~vi~~ag~~~~~-----------~~~~~~~~n~~g~~~ll~~~~~~------~~~~~v~~SS~~  184 (252)
                                 + ++|+||||||+....           +++..+++|+.++.+++++++..      +.++||++||..
T Consensus       552 ~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiA  631 (1688)
T 2pff_A          552 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH  631 (1688)
T ss_dssp             HHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCT
T ss_pred             HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChH
Confidence                       1 399999999975322           12456789999999999987332      225899999974


Q ss_pred             eeccCCCCCCCcchhccchhhHHHHHHHHHHHHH-H----H--cCCcEEEEeCCccc-CCC
Q 025456          185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-R----K--SGINYTIIRPGGLR-NEP  237 (252)
Q Consensus       185 v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-~----~--~gi~~~~lrPg~i~-~~~  237 (252)
                      ....              ....|+.+|++.+.++ +    +  ..|++++|.||++. +++
T Consensus       632 G~~G--------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M  678 (1688)
T 2pff_A          632 GTFG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGL  678 (1688)
T ss_dssp             TTSS--------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSS
T ss_pred             hccC--------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcc
Confidence            3211              2367999999999873 2    1  13899999999998 443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.55  E-value=3.5e-14  Score=147.79  Aligned_cols=158  Identities=14%  Similarity=0.113  Sum_probs=115.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCchhhh---h---ccccCCCCeEEEEeeCCCChHHHHHHHc----
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAK---T---TLSKDNPSLQIVKADVTEGSAKLSEAIG----  133 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~---~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~----  133 (252)
                      .+++++||||+|+||+++++.|+++|++ |++++|+..+.+   +   .+...+.++.++.+|++| .+++.+++.    
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd-~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASS-LDGARSLITEATQ 1961 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCC-HHHHHHHHHHHHh
Confidence            5799999999999999999999999997 777888754321   1   111134568889999999 766665543    


Q ss_pred             -CCCcEEEEcCCCCC--------CCCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          134 -DDSEAVVCATGFQP--------GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       134 -~~~d~vi~~ag~~~--------~~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                       +++|+||||||+..        ..+|+..+++|+.|+.++.+++...  ..++||++||.......            .
T Consensus      1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~------------~ 2029 (2512)
T 2vz8_A         1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGN------------A 2029 (2512)
T ss_dssp             HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTC------------T
T ss_pred             cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCC------------C
Confidence             14999999999743        2467788999999999998887653  34799999998542211            1


Q ss_pred             hhhHHHHHHHHHHHHHH---HcCCcEEEEeCCcccC
Q 025456          203 VFGLTLIAKLQAEQYIR---KSGINYTIIRPGGLRN  235 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~---~~gi~~~~lrPg~i~~  235 (252)
                      ....|+.+|.+.+.+.+   ..|++...+..|.+-+
T Consensus      2030 g~~~Y~aaKaal~~l~~~rr~~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A         2030 GQANYGFANSAMERICEKRRHDGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCBCT
T ss_pred             CcHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            24789999999998775   4689988888876543

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.48  E-value=3.1e-13  Score=141.00  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=110.0

Q ss_pred             ccCCCcEEEEEcCCCh-HHHHHHHHHHHCCCeEEEeecCchh-----hhhc---cccCCCCeEEEEeeCCCChHHHHHHH
Q 025456           62 VSVKQKKIFVAGATGS-SGKRIVEQLLAKGFAVKAGVRDLDK-----AKTT---LSKDNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~-iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      ..+++|+++||||+++ ||+++++.|+++|++|++++|+.+.     .++.   +.....++..+.+|++| .+++++++
T Consensus      2132 ~~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd-~~~v~~lv 2210 (3089)
T 3zen_D         2132 XXXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMAS-YSDIDKLV 2210 (3089)
T ss_dssp             CCCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTC-HHHHHHHH
T ss_pred             ccCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHH
Confidence            3478999999999999 9999999999999999999998765     2222   22233467889999999 76666553


Q ss_pred             ----c------CCCcEEEEcCCCC----C---------CCCCCCc----ceehHHHHHHHHHHHH----hcCCC---EEE
Q 025456          133 ----G------DDSEAVVCATGFQ----P---------GWDLFAP----WKVDNFGTVNLVEACR----KRGVN---RFI  178 (252)
Q Consensus       133 ----~------~~~d~vi~~ag~~----~---------~~~~~~~----~~~n~~g~~~ll~~~~----~~~~~---~~v  178 (252)
                          .      +++|++|||||+.    .         ..+|+..    +++|+.+++.++..+.    +.+.+   .++
T Consensus      2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii 2290 (3089)
T 3zen_D         2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVV 2290 (3089)
T ss_dssp             HHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             HHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence                2      2499999999971    1         1234444    6788888888877763    33322   122


Q ss_pred             E-EccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH----H----cCCcEEEEeCCcccC
Q 025456          179 L-ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR----K----SGINYTIIRPGGLRN  235 (252)
Q Consensus       179 ~-~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~----~gi~~~~lrPg~i~~  235 (252)
                      . .|+..  +.            ......|+.+|++.+.+.+    +    .+++++.+.||++.+
T Consensus      2291 ~~~ss~~--g~------------~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~t 2342 (3089)
T 3zen_D         2291 LPGSPNR--GM------------FGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKG 2342 (3089)
T ss_dssp             EEECSST--TS------------CSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEEC
T ss_pred             EECCccc--cc------------CCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCC
Confidence            2 22210  00            0112469999998887654    2    258999999999983

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.43  E-value=1e-12  Score=95.15  Aligned_cols=96  Identities=26%  Similarity=0.335  Sum_probs=79.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ++++|+|+|+ |++|+++++.|++.| ++|++++|++++.+...   ..++.++.+|+.+ .+.+.+.+.+ +|+|||++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~---~~~~~~~~~d~~~-~~~~~~~~~~-~d~vi~~~   77 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN---RMGVATKQVDAKD-EAGLAKALGG-FDAVISAA   77 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH---TTTCEEEECCTTC-HHHHHHHTTT-CSEEEECS
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHcC-CCEEEECC
Confidence            4689999999 999999999999999 99999999987765543   2467889999999 8889999988 99999999


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEE
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~  180 (252)
                      +..              ....+++++.+.+++++.+.
T Consensus        78 ~~~--------------~~~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           78 PFF--------------LTPIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             CGG--------------GHHHHHHHHHHTTCEEECCC
T ss_pred             Cch--------------hhHHHHHHHHHhCCCEEEec
Confidence            632              14688899999998555443

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.21  E-value=1.8e-10  Score=99.27  Aligned_cols=163  Identities=16%  Similarity=0.058  Sum_probs=102.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHH-HCCCeEEEeecCchhhhh---------------ccccCCCCeEEEEeeCCCChHH
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLL-AKGFAVKAGVRDLDKAKT---------------TLSKDNPSLQIVKADVTEGSAK  127 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~-~~G~~V~~~~r~~~~~~~---------------~~~~~~~~~~~i~~Dl~d~~~~  127 (252)
                      ...|++|||||++++|.+.+..|+ +.|..|+++.+..+..++               .....+.....+.+|+++ .++
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d-~e~  126 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFS-DEI  126 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTS-HHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCC-HHH
Confidence            357999999999999999999998 679999998886543221               112234578899999999 655


Q ss_pred             HHHHHcC------CCcEEEEcCCCCCCCCCC--------------------------Ccc--------eehHHHHHH---
Q 025456          128 LSEAIGD------DSEAVVCATGFQPGWDLF--------------------------APW--------KVDNFGTVN---  164 (252)
Q Consensus       128 ~~~~~~~------~~d~vi~~ag~~~~~~~~--------------------------~~~--------~~n~~g~~~---  164 (252)
                      +++.++.      ++|+|||+++.....+++                          ...        +-++.++..   
T Consensus       127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg  206 (401)
T 4ggo_A          127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG  206 (401)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence            5555431      499999999865311110                          000        011223322   


Q ss_pred             ------HHHHHHhcCC----CEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH-----cCCcEEEEe
Q 025456          165 ------LVEACRKRGV----NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-----SGINYTIIR  229 (252)
Q Consensus       165 ------ll~~~~~~~~----~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-----~gi~~~~lr  229 (252)
                            ...+....++    .++|..|+.+.   .       ...|....+.++.+|+..|...+.     .+++++++.
T Consensus       207 ~s~~s~w~~al~~a~lla~G~siva~SYiGs---e-------~t~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~v~v  276 (401)
T 4ggo_A          207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGP---E-------ATQALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSV  276 (401)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEEEEEECCCC---G-------GGHHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             hhHHHHHHHHHHhhhcccCCceEEEEeccCc---c-------eeecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                  2233333332    47888877631   1       011111124678999999976542     357899999


Q ss_pred             CCcccCCC
Q 025456          230 PGGLRNEP  237 (252)
Q Consensus       230 Pg~i~~~~  237 (252)
                      ++.+.|.-
T Consensus       277 ~~a~vT~A  284 (401)
T 4ggo_A          277 NKGLVTRA  284 (401)
T ss_dssp             CCCCCCTT
T ss_pred             cCccccch
Confidence            99888864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.19  E-value=2.5e-11  Score=101.98  Aligned_cols=81  Identities=30%  Similarity=0.329  Sum_probs=67.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccC--CCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ++++++++||||+|++|+++++.|+++|++|++++|+.++.++.....  ..++.++.+|++| .+++.+.+.+ +|+||
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~-~DvlV  193 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD-DASRAEAVKG-AHFVF  193 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS-HHHHHHHTTT-CSEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC-HHHHHHHHHh-CCEEE
Confidence            457899999999999999999999999999999999977655432210  0246778899999 8889999988 99999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      ||+|.
T Consensus       194 n~ag~  198 (287)
T 1lu9_A          194 TAGAI  198 (287)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            99975

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=99.11  E-value=3.9e-10  Score=96.30  Aligned_cols=114  Identities=14%  Similarity=0.113  Sum_probs=82.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhh-ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKT-TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~-~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .++|+|+||+|++|..++..|+++|  ++|++++++++.... .+........+ .+ +.+ .+++.+++.+ +|+|||+
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v-~~-~~~-t~d~~~al~g-aDvVi~~   83 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV-RG-FLG-QQQLEAALTG-MDLIIVP   83 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEE-EE-EES-HHHHHHHHTT-CSEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceE-EE-EeC-CCCHHHHcCC-CCEEEEc
Confidence            5799999999999999999999998  789998877652211 11111111122 22 233 4567788999 9999999


Q ss_pred             CCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +|...  ..+..+.+..|+.++.++++++++.+.+.+|+++|.
T Consensus        84 ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN  126 (326)
T 1smk_A           84 AGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN  126 (326)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence            99654  223455678999999999999999887777777764

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=99.08  E-value=7.3e-11  Score=101.03  Aligned_cols=112  Identities=12%  Similarity=0.064  Sum_probs=81.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecC----chhhhh---ccccCCCCeEEEEeeCCCChHHHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRD----LDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEA  131 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~----~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~  131 (252)
                      .++|+||||+|++|++++..|+.+|.       +|++++++    .++.+.   .+.+....+   ..|+.. ..+..++
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~---~~~i~~-~~~~~~a   80 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL---LAGMTA-HADPMTA   80 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT---EEEEEE-ESSHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc---cCcEEE-ecCcHHH
Confidence            47999999999999999999999885       79988887    432321   111111112   245554 4557788


Q ss_pred             HcCCCcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcC-CC-EEEEEcc
Q 025456          132 IGDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRG-VN-RFILISS  182 (252)
Q Consensus       132 ~~~~~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~-~~-~~v~~SS  182 (252)
                      +.+ +|+|||+||....  .+..+.+..|+.++.++++++++.+ .. +||++|.
T Consensus        81 l~~-aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           81 FKD-ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             TTT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             hCC-CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            999 9999999997542  2334567899999999999999874 54 8888886

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=99.05  E-value=2.5e-09  Score=79.72  Aligned_cols=101  Identities=24%  Similarity=0.208  Sum_probs=75.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~a  143 (252)
                      ++++|+|+|+ |.+|+.+++.|.+.|++|++++|+++..+....   .+..++.+|.++ .+.+.++ +.+ +|+||+++
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~---~~~~~~~~d~~~-~~~l~~~~~~~-~d~vi~~~   78 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS---YATHAVIANATE-ENELLSLGIRN-FEYVIVAI   78 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT---TCSEEEECCTTC-HHHHHTTTGGG-CSEEEECC
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hCCEEEEeCCCC-HHHHHhcCCCC-CCEEEECC
Confidence            4678999998 999999999999999999999998776554322   245678899988 7777665 666 99999998


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +..        .+.|    ..+.+.+++.+.+++|..++.
T Consensus        79 ~~~--------~~~~----~~~~~~~~~~~~~~ii~~~~~  106 (144)
T 2hmt_A           79 GAN--------IQAS----TLTTLLLKELDIPNIWVKAQN  106 (144)
T ss_dssp             CSC--------HHHH----HHHHHHHHHTTCSEEEEECCS
T ss_pred             CCc--------hHHH----HHHHHHHHHcCCCeEEEEeCC
Confidence            731        1222    346677788887777776654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=99.03  E-value=1.3e-09  Score=97.06  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=79.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ++++|+|+| +|++|+++++.|++.|++|++++|+.++.++... ...++..+.+|++| .+++.+++.+ +|+||||++
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~-~~~~~~~~~~Dv~d-~~~l~~~l~~-~DvVIn~a~   77 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA-GVQHSTPISLDVND-DAALDAEVAK-HDLVISLIP   77 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTT-TCTTEEEEECCTTC-HHHHHHHHTT-SSEEEECCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHH-hcCCceEEEeecCC-HHHHHHHHcC-CcEEEECCc
Confidence            478999998 7999999999999999999999999877655432 22347788999999 7888888988 999999998


Q ss_pred             CCCCCC-------C-CCccee--hHHHHHHHHHHHHhcCC
Q 025456          145 FQPGWD-------L-FAPWKV--DNFGTVNLVEACRKRGV  174 (252)
Q Consensus       145 ~~~~~~-------~-~~~~~~--n~~g~~~ll~~~~~~~~  174 (252)
                      ......       . ..+++.  ....+..++++++++|+
T Consensus        78 ~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv  117 (450)
T 1ff9_A           78 YTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI  117 (450)
T ss_dssp             --CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred             cccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence            642100       0 111111  13467889999999987

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.98  E-value=4.9e-09  Score=78.26  Aligned_cols=97  Identities=20%  Similarity=0.158  Sum_probs=72.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~a  143 (252)
                      ++++++|+|+ |.+|+++++.|.++|++|++++++++..+....   .++.++.+|.++ ++.+.++ +.+ +|+||.+.
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~---~~~~~~~gd~~~-~~~l~~~~~~~-~d~vi~~~   78 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED---EGFDAVIADPTD-ESFYRSLDLEG-VSAVLITG   78 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---TTCEEEECCTTC-HHHHHHSCCTT-CSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH---CCCcEEECCCCC-HHHHHhCCccc-CCEEEEec
Confidence            4678999998 999999999999999999999999887655433   357889999999 7777765 345 99999887


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEE
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~  180 (252)
                      +-             ......++..+++.+..+++..
T Consensus        79 ~~-------------~~~n~~~~~~a~~~~~~~iia~  102 (141)
T 3llv_A           79 SD-------------DEFNLKILKALRSVSDVYAIVR  102 (141)
T ss_dssp             SC-------------HHHHHHHHHHHHHHCCCCEEEE
T ss_pred             CC-------------HHHHHHHHHHHHHhCCceEEEE
Confidence            61             1223355666776665455543

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.93  E-value=5.1e-09  Score=88.94  Aligned_cols=110  Identities=15%  Similarity=0.134  Sum_probs=77.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeec--Cchhhhh----cc---ccCCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVR--DLDKAKT----TL---SKDNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r--~~~~~~~----~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      ++|+||||+|++|++++..|+.+|.  ++.++++  +.++.+.    +.   ......+++...|     +++.+++.+ 
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~-----d~l~~al~g-   74 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES-----DENLRIIDE-   74 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE-----TTCGGGGTT-
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC-----cchHHHhCC-
Confidence            4899999999999999999998874  6777777  4432221    10   1011223333221     234567888 


Q ss_pred             CcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       136 ~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +|+|||+||....  .+..+.+..|+.++.++++++++.+ +.+|+++|.
T Consensus        75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SN  123 (313)
T 1hye_A           75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITN  123 (313)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSS
T ss_pred             CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecC
Confidence            9999999997542  2334567899999999999999988 888888774

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.90  E-value=1.5e-09  Score=91.83  Aligned_cols=108  Identities=14%  Similarity=0.076  Sum_probs=76.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeec--Cchhhhh---cccc---CCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVR--DLDKAKT---TLSK---DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r--~~~~~~~---~~~~---~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      ++|+||||+|++|..++..|+.+|.  +++++++  +.++.+.   .+.+   ...++.+.. |  +     .+++.+ +
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~-----~~a~~~-a   71 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G-----YEDTAG-S   71 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C-----GGGGTT-C
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C-----HHHhCC-C
Confidence            4899999999999999999998875  6887777  5443321   0100   112334333 1  1     235778 9


Q ss_pred             cEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          137 EAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       137 d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |+|||+||....  .+..+.+..|+.++.++++++++.+.+.+|+++|.
T Consensus        72 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN  120 (303)
T 1o6z_A           72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (303)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            999999997542  22335578999999999999999987778887764

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.87  E-value=4e-09  Score=92.71  Aligned_cols=93  Identities=19%  Similarity=0.315  Sum_probs=72.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC---CeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHcC-CCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD-DSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d  137 (252)
                      |++|+|+|| |++|+++++.|+++|   .+|++.+|+.++.++....    ...++..+.+|++| .+++.+++.+ ++|
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d-~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS-IEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC-HHHHHHHHHHHCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC-HHHHHHHHHhhCCC
Confidence            468999999 999999999999998   3899999998876543321    12368899999999 8888888865 489


Q ss_pred             EEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCC
Q 025456          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       138 ~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      +||||++...              ...++++|.+.++
T Consensus        79 vVin~ag~~~--------------~~~v~~a~l~~g~  101 (405)
T 4ina_A           79 IVLNIALPYQ--------------DLTIMEACLRTGV  101 (405)
T ss_dssp             EEEECSCGGG--------------HHHHHHHHHHHTC
T ss_pred             EEEECCCccc--------------ChHHHHHHHHhCC
Confidence            9999997421              1456777777776

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.87  E-value=4.7e-09  Score=93.69  Aligned_cols=107  Identities=17%  Similarity=0.229  Sum_probs=78.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ++++++|+|+|+ |++|+++++.|++. |++|++++|+.++.+++...  .++..+.+|+.| .+++.+++.+ +|+|||
T Consensus        20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~--~~~~~~~~D~~d-~~~l~~~l~~-~DvVIn   94 (467)
T 2axq_A           20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP--SGSKAISLDVTD-DSALDKVLAD-NDVVIS   94 (467)
T ss_dssp             ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG--GTCEEEECCTTC-HHHHHHHHHT-SSEEEE
T ss_pred             CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh--cCCcEEEEecCC-HHHHHHHHcC-CCEEEE
Confidence            345789999997 99999999999998 78999999998776654432  357778899998 7888888888 999999


Q ss_pred             cCCCCCCC--------CCCCcceehH--HHHHHHHHHHHhcCC
Q 025456          142 ATGFQPGW--------DLFAPWKVDN--FGTVNLVEACRKRGV  174 (252)
Q Consensus       142 ~ag~~~~~--------~~~~~~~~n~--~g~~~ll~~~~~~~~  174 (252)
                      |++.....        ....+++++.  ..+..+++.++++|+
T Consensus        95 ~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv  137 (467)
T 2axq_A           95 LIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI  137 (467)
T ss_dssp             CSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred             CCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence            99864210        0112233333  345778888888876

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.85  E-value=4.8e-08  Score=72.29  Aligned_cols=98  Identities=23%  Similarity=0.307  Sum_probs=71.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag  144 (252)
                      +++|+|+|+ |.+|..+++.|.+.|++|++++|+++..+....  ..++.++.+|.++ .+.+.+. +.+ +|+||++.+
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~--~~~~~~~~~d~~~-~~~l~~~~~~~-~d~vi~~~~   78 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA--EIDALVINGDCTK-IKTLEDAGIED-ADMYIAVTG   78 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--HCSSEEEESCTTS-HHHHHHTTTTT-CSEEEECCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH--hcCcEEEEcCCCC-HHHHHHcCccc-CCEEEEeeC
Confidence            578999987 999999999999999999999998876554322  1256778889888 6666544 556 999999975


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      ..         ..|    ..+.+.+++.+.+++|..+
T Consensus        79 ~~---------~~~----~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           79 KE---------EVN----LMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             CH---------HHH----HHHHHHHHHTTCCCEEEEC
T ss_pred             Cc---------hHH----HHHHHHHHHcCCCEEEEEe
Confidence            21         122    3556677777777777644

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.84  E-value=1.1e-08  Score=82.43  Aligned_cols=75  Identities=13%  Similarity=0.260  Sum_probs=56.0

Q ss_pred             cCCCcEEEEEcC----------------CChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChH
Q 025456           63 SVKQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA  126 (252)
Q Consensus        63 ~~~~~~vlVtGa----------------tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~  126 (252)
                      .+++|+|+||||                ||++|.++++.|+++|++|+++.++.. ..     ...+++  ..|+.+ .+
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-----~~~g~~--~~dv~~-~~   75 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-----TPPFVK--RVDVMT-AL   75 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-----CCTTEE--EEECCS-HH
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-----cCCCCe--EEccCc-HH
Confidence            357999999999                799999999999999999999887642 11     112343  467777 43


Q ss_pred             HH----HHHHcCCCcEEEEcCCCCC
Q 025456          127 KL----SEAIGDDSEAVVCATGFQP  147 (252)
Q Consensus       127 ~~----~~~~~~~~d~vi~~ag~~~  147 (252)
                      ++    .+.+++ +|++|||||+..
T Consensus        76 ~~~~~v~~~~~~-~Dili~~Aav~d   99 (226)
T 1u7z_A           76 EMEAAVNASVQQ-QNIFIGCAAVAD   99 (226)
T ss_dssp             HHHHHHHHHGGG-CSEEEECCBCCS
T ss_pred             HHHHHHHHhcCC-CCEEEECCcccC
Confidence            33    334556 999999999754

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.83  E-value=1.1e-08  Score=82.43  Aligned_cols=78  Identities=24%  Similarity=0.316  Sum_probs=55.4

Q ss_pred             CCcEEEEEcC----------------CChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC-ChHH
Q 025456           65 KQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-GSAK  127 (252)
Q Consensus        65 ~~~~vlVtGa----------------tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d-~~~~  127 (252)
                      +||+|+||||                ||++|.++++.|+++|++|+++.|+.... ..   ...++.++..+-.+ ..+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~-~~---~~~~~~~~~v~s~~em~~~   77 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALK-PE---PHPNLSIREITNTKDLLIE   77 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCC-CC---CCTTEEEEECCSHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-cc---CCCCeEEEEHhHHHHHHHH
Confidence            4899999999                99999999999999999999999875321 10   12355555433211 1244


Q ss_pred             HHHHHcCCCcEEEEcCCCCC
Q 025456          128 LSEAIGDDSEAVVCATGFQP  147 (252)
Q Consensus       128 ~~~~~~~~~d~vi~~ag~~~  147 (252)
                      +.+.+++ +|++|||||+..
T Consensus        78 v~~~~~~-~Dili~aAAvsD   96 (232)
T 2gk4_A           78 MQERVQD-YQVLIHSMAVSD   96 (232)
T ss_dssp             HHHHGGG-CSEEEECSBCCS
T ss_pred             HHHhcCC-CCEEEEcCcccc
Confidence            5555666 999999999754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.79  E-value=5e-08  Score=73.86  Aligned_cols=99  Identities=16%  Similarity=0.162  Sum_probs=70.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~  142 (252)
                      ..++++|+|+ |.+|+.+++.|.+.|++|+++++++ +..+........++.++.+|.++ .+.+.++ +.+ .|+||.+
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~-~~~l~~a~i~~-ad~vi~~   78 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSND-SSVLKKAGIDR-CRAILAL   78 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS-HHHHHHHTTTT-CSEEEEC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCC-HHHHHHcChhh-CCEEEEe
Confidence            3578999996 9999999999999999999999974 32222111112468999999999 7878776 777 9999988


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhc-CCCEEEE
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFIL  179 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~  179 (252)
                      .+.         -..|    ..+...+++. +..++|.
T Consensus        79 ~~~---------d~~n----~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           79 SDN---------DADN----AFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             SSC---------HHHH----HHHHHHHHHHTSSSCEEE
T ss_pred             cCC---------hHHH----HHHHHHHHHHCCCCEEEE
Confidence            752         1223    3455556665 5445555

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.76  E-value=5.2e-08  Score=84.39  Aligned_cols=94  Identities=23%  Similarity=0.257  Sum_probs=73.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +.|+|+|.|| |++|+.+++.|.+ .++|.+.+|+..+.++..    ..+..+.+|+.| .+++.+.+.+ .|+||++++
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~----~~~~~~~~d~~d-~~~l~~~~~~-~DvVi~~~p   86 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK----EFATPLKVDASN-FDKLVEVMKE-FELVIGALP   86 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT----TTSEEEECCTTC-HHHHHHHHTT-CSEEEECCC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh----ccCCcEEEecCC-HHHHHHHHhC-CCEEEEecC
Confidence            3568999998 9999999998865 579999999887766533    456788999999 8999999998 999999987


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      ..        +      ...++++|.++|+ ++|=+|
T Consensus        87 ~~--------~------~~~v~~~~~~~g~-~yvD~s  108 (365)
T 3abi_A           87 GF--------L------GFKSIKAAIKSKV-DMVDVS  108 (365)
T ss_dssp             GG--------G------HHHHHHHHHHHTC-EEEECC
T ss_pred             Cc--------c------cchHHHHHHhcCc-ceEeee
Confidence            42        1      2367778887775 555544

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.76  E-value=2.4e-07  Score=70.25  Aligned_cols=100  Identities=21%  Similarity=0.119  Sum_probs=73.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~a  143 (252)
                      .+++|+|+|+ |.+|..+++.|.+.|++|++++|+++..+....  ..++.++.+|..+ .+.+.++ +.+ +|+||.+.
T Consensus        18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~--~~g~~~~~~d~~~-~~~l~~~~~~~-ad~Vi~~~   92 (155)
T 2g1u_A           18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS--EFSGFTVVGDAAE-FETLKECGMEK-ADMVFAFT   92 (155)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT--TCCSEEEESCTTS-HHHHHTTTGGG-CSEEEECS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh--cCCCcEEEecCCC-HHHHHHcCccc-CCEEEEEe
Confidence            4689999996 999999999999999999999999877654321  2356778889887 6666655 666 99999987


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHh-cCCCEEEEEcc
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRK-RGVNRFILISS  182 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~-~~~~~~v~~SS  182 (252)
                      +..             .....+++.++. .+..+++...+
T Consensus        93 ~~~-------------~~~~~~~~~~~~~~~~~~iv~~~~  119 (155)
T 2g1u_A           93 NDD-------------STNFFISMNARYMFNVENVIARVY  119 (155)
T ss_dssp             SCH-------------HHHHHHHHHHHHTSCCSEEEEECS
T ss_pred             CCc-------------HHHHHHHHHHHHHCCCCeEEEEEC
Confidence            621             123455566666 56556666554

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.56  E-value=1.6e-07  Score=80.22  Aligned_cols=111  Identities=15%  Similarity=0.085  Sum_probs=77.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC--e-----EEEeecCch--hhh---hccccCC-CCeEEEEeeCCCChHHHHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF--A-----VKAGVRDLD--KAK---TTLSKDN-PSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~--~-----V~~~~r~~~--~~~---~~~~~~~-~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      -++|+||||+|+||++++..|+..|.  +     ++++++++.  ..+   ..+.+.. +-.    .++.. .+...+.+
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~----~~~~~-~~~~~~~~   77 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL----KDVIA-TDKEEIAF   77 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE----EEEEE-ESCHHHHT
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhccc----CCEEE-cCCcHHHh
Confidence            37899999999999999999998774  4     888888642  221   1111111 112    12221 22355678


Q ss_pred             cCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC--EEEEEcc
Q 025456          133 GDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN--RFILISS  182 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~--~~v~~SS  182 (252)
                      .+ .|+||++||...  ..++.+.++.|...+..+++++++.+.+  +++.+|-
T Consensus        78 ~d-aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN  130 (333)
T 5mdh_A           78 KD-LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN  130 (333)
T ss_dssp             TT-CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CC-CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            88 999999999753  3466777899999999999999988764  5777664

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.56  E-value=5.2e-07  Score=70.19  Aligned_cols=97  Identities=16%  Similarity=0.215  Sum_probs=71.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH--HcCCCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA--IGDDSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~--~~~~~d~vi  140 (252)
                      +.+++|+|+|+ |.+|..+++.|.+. |++|+++++++++.+....   .++.++.+|.++ .+.+.++  +.+ +|+||
T Consensus        37 ~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~---~g~~~~~gd~~~-~~~l~~~~~~~~-ad~vi  110 (183)
T 3c85_A           37 PGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS---EGRNVISGDATD-PDFWERILDTGH-VKLVL  110 (183)
T ss_dssp             CTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH---TTCCEEECCTTC-HHHHHTBCSCCC-CCEEE
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH---CCCCEEEcCCCC-HHHHHhccCCCC-CCEEE
Confidence            34678999985 99999999999999 9999999999877655332   356778899988 7767766  666 99999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcC-CCEEEE
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFIL  179 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~v~  179 (252)
                      .+.+.             ......++..+++.+ ..+++.
T Consensus       111 ~~~~~-------------~~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          111 LAMPH-------------HQGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             ECCSS-------------HHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EeCCC-------------hHHHHHHHHHHHHHCCCCEEEE
Confidence            87652             122345566677766 335544

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.48  E-value=2.6e-07  Score=72.78  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=66.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChH---HHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA---KLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~---~~~~~~~~-~~d~vi  140 (252)
                      .+++|+|+||+|+||..+++.+...|++|++++|++++.+.... .  +... ..|..+ .+   .+.+...+ .+|+||
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~--g~~~-~~d~~~-~~~~~~~~~~~~~~~~D~vi  112 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR-L--GVEY-VGDSRS-VDFADEILELTDGYGVDVVL  112 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT-T--CCSE-EEETTC-STHHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--CCCE-EeeCCc-HHHHHHHHHHhCCCCCeEEE
Confidence            47899999999999999999999999999999998776543322 1  1221 247766 33   33333322 399999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      +|+|..              .....++.++..  +++|.+++..
T Consensus       113 ~~~g~~--------------~~~~~~~~l~~~--G~~v~~g~~~  140 (198)
T 1pqw_A          113 NSLAGE--------------AIQRGVQILAPG--GRFIELGKKD  140 (198)
T ss_dssp             ECCCTH--------------HHHHHHHTEEEE--EEEEECSCGG
T ss_pred             ECCchH--------------HHHHHHHHhccC--CEEEEEcCCC
Confidence            998721              123344444443  4899988753

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.46  E-value=4.7e-07  Score=76.79  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=75.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhh-hccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAK-TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~-~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ++|.|+||+|++|..++..|+..|  .+|+++++++.... ..+.+......+... . . .++..+++.+ .|+||+++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~-~-~-t~d~~~a~~~-aDvVvi~a   76 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGY-L-G-PEQLPDCLKG-CDVVVIPA   76 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEE-E-S-GGGHHHHHTT-CSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEe-c-C-CCCHHHHhCC-CCEEEECC
Confidence            489999999999999999999888  78999999872221 111111111111110 0 0 1346677888 99999999


Q ss_pred             CCCC--CCCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          144 GFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       144 g~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      |...  ..+..+.+..|+.....+++.+++... .++|++|
T Consensus        77 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s  117 (314)
T 1mld_A           77 GVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS  117 (314)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            8754  233445678899999999999987654 3677765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.46  E-value=1e-06  Score=70.53  Aligned_cols=96  Identities=18%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag~  145 (252)
                      |+|+|+|+ |.+|+++++.|.++|++|++++++++..+....  ..++.++.+|.++ .+.+.++ +.+ .|+||.+.+.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~--~~~~~~i~gd~~~-~~~l~~a~i~~-ad~vi~~~~~   75 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAK--KLKATIIHGDGSH-KEILRDAEVSK-NDVVVILTPR   75 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--HSSSEEEESCTTS-HHHHHHHTCCT-TCEEEECCSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH--HcCCeEEEcCCCC-HHHHHhcCccc-CCEEEEecCC
Confidence            47999997 999999999999999999999999887654322  1357899999999 7777776 566 9999977642


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHh-cCCCEEEEE
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRK-RGVNRFILI  180 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~-~~~~~~v~~  180 (252)
                      .         ..|    ..+...+++ .+..++|.-
T Consensus        76 d---------~~n----~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           76 D---------EVN----LFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             H---------HHH----HHHHHHHHHTSCCCEEEEC
T ss_pred             c---------HHH----HHHHHHHHHHcCCCeEEEE
Confidence            1         122    345555565 566666543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.38  E-value=1.2e-06  Score=65.21  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag  144 (252)
                      .++|+|.|+ |.+|..+++.|.+.|++|++++++++..+....   .++.++.+|.++ .+.+.++ +.+ .|+||.+.+
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~---~g~~~i~gd~~~-~~~l~~a~i~~-ad~vi~~~~   80 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE---RGVRAVLGNAAN-EEIMQLAHLEC-AKWLILTIP   80 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---TTCEEEESCTTS-HHHHHHTTGGG-CSEEEECCS
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---cCCCEEECCCCC-HHHHHhcCccc-CCEEEEECC
Confidence            468999997 999999999999999999999999887765432   468889999999 7766654 455 899998765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.33  E-value=1.5e-06  Score=75.39  Aligned_cols=106  Identities=12%  Similarity=0.101  Sum_probs=70.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      +++++|+|+|+ |.+|+.+++.|...|++|++++|++++.+.........   +..|..+ .+++.+.+.+ +|+||+++
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~---~~~~~~~-~~~l~~~~~~-~DvVi~~~  237 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGR---VITLTAT-EANIKKSVQH-ADLLIGAV  237 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS---EEEEECC-HHHHHHHHHH-CSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCce---EEEecCC-HHHHHHHHhC-CCEEEECC
Confidence            56799999999 99999999999999999999999987654432211122   4567777 7778888888 99999999


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      +......+. .  +    +...++.++. + +.+|.+|+..
T Consensus       238 g~~~~~~~~-l--i----~~~~l~~mk~-g-g~iV~v~~~~  269 (369)
T 2eez_A          238 LVPGAKAPK-L--V----TRDMLSLMKE-G-AVIVDVAVDQ  269 (369)
T ss_dssp             C-------C-C--S----CHHHHTTSCT-T-CEEEECC---
T ss_pred             CCCccccch-h--H----HHHHHHhhcC-C-CEEEEEecCC
Confidence            854311111 1  1    1233444442 3 4788888753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.28  E-value=3.2e-06  Score=68.32  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=58.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag  144 (252)
                      .++++|+|+ |.+|+.+++.|.++|+ |++++++++..+...    .++.++.+|.+| .+.+.++ +.+ .|.||.+.+
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~----~~~~~i~gd~~~-~~~l~~a~i~~-ad~vi~~~~   80 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR----SGANFVHGDPTR-VSDLEKANVRG-ARAVIVDLE   80 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH----TTCEEEESCTTC-HHHHHHTTCTT-CSEEEECCS
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh----cCCeEEEcCCCC-HHHHHhcCcch-hcEEEEcCC
Confidence            468999997 9999999999999999 999999887655432    458899999999 7777766 667 999998764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.27  E-value=2.9e-06  Score=71.73  Aligned_cols=80  Identities=24%  Similarity=0.319  Sum_probs=60.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecC---chhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRD---LDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~---~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      ++++++++|+|+ |++|++++..|++.|. +|+++.|+   .++.+++...  ...+..+...++.+ .+++.+.+.+ .
T Consensus       151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~-~~~l~~~l~~-a  227 (315)
T 3tnl_A          151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED-HEQLRKEIAE-S  227 (315)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHHT-C
T ss_pred             CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch-HHHHHhhhcC-C
Confidence            467899999997 8999999999999998 89999999   6555443221  01123444567766 6678888888 9


Q ss_pred             cEEEEcCCC
Q 025456          137 EAVVCATGF  145 (252)
Q Consensus       137 d~vi~~ag~  145 (252)
                      |+|||+...
T Consensus       228 DiIINaTp~  236 (315)
T 3tnl_A          228 VIFTNATGV  236 (315)
T ss_dssp             SEEEECSST
T ss_pred             CEEEECccC
Confidence            999998753

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.25  E-value=2e-06  Score=73.24  Aligned_cols=76  Identities=16%  Similarity=0.133  Sum_probs=54.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC-C--hHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-G--SAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d-~--~~~~~~~~~~~~d~vi~  141 (252)
                      .+++|+|+||+|+||..+++.+...|++|++++|++++.+.... ....   ...|.++ .  .+.+.+...+.+|+||+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~~---~~~d~~~~~~~~~~~~~~~~~~~d~vi~  220 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGFD---AAFNYKTVNSLEEALKKASPDGYDCYFD  220 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCS---EEEETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCCc---EEEecCCHHHHHHHHHHHhCCCCeEEEE
Confidence            57999999999999999999999999999999998776554321 2221   2347765 1  12233332224999999


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      |+|
T Consensus       221 ~~g  223 (333)
T 1v3u_A          221 NVG  223 (333)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            998

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.22  E-value=1.6e-06  Score=71.84  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=53.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+++++++|+|+ |++|++++..|++.|++|++..|+.++.+++.........   .|..+ .+++.+  .+ +|+||+|
T Consensus       116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~---~~~~~-~~~~~~--~~-~DivVn~  187 (271)
T 1nyt_A          116 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGS---IQALS-MDELEG--HE-FDLIINA  187 (271)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSS---EEECC-SGGGTT--CC-CSEEEEC
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCC---eeEec-HHHhcc--CC-CCEEEEC
Confidence            456899999998 8999999999999999999999998766543321111001   12233 232322  46 9999999


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      ++..
T Consensus       188 t~~~  191 (271)
T 1nyt_A          188 TSSG  191 (271)
T ss_dssp             CSCG
T ss_pred             CCCC
Confidence            9854

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.19  E-value=4.7e-07  Score=77.51  Aligned_cols=109  Identities=15%  Similarity=0.091  Sum_probs=73.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhh----ccccC--CCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKT----TLSKD--NPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~----~~~~~--~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      +++++|.|+|++|++|+.++..++..|  .+|++++++.++.+.    +....  ..++.+        ..+..+++.+ 
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~--------t~d~~~al~d-   76 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF--------TSDIKEALTD-   76 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE--------ESCHHHHHTT-
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE--------cCCHHHHhCC-
Confidence            457899999999999999999999988  489999988765432    11101  111211        1234567888 


Q ss_pred             CcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCE--EEEEc
Q 025456          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNR--FILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~--~v~~S  181 (252)
                      .|+||.++|...  ..+..+.+..|......+.+.+++...+-  ++.+|
T Consensus        77 ADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs  126 (343)
T 3fi9_A           77 AKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF  126 (343)
T ss_dssp             EEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred             CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence            999999999753  22334457789888999999998776433  45555

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.19  E-value=3.6e-06  Score=72.11  Aligned_cols=77  Identities=19%  Similarity=0.128  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCCh---HHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS---AKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~---~~~~~~~~~~~d~vi~  141 (252)
                      .+++|+|+||+|++|..+++.+...|++|++++|++++.+.... ..  .. ...|+.+..   +.+.+...+.+|+||+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~-~g--~~-~~~d~~~~~~~~~~~~~~~~~~~D~vi~  244 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS-IG--GE-VFIDFTKEKDIVGAVLKATDGGAHGVIN  244 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH-TT--CC-EEEETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH-cC--Cc-eEEecCccHhHHHHHHHHhCCCCCEEEE
Confidence            57899999999999999999999999999999998776543222 21  22 234877411   2233333223999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      ++|.
T Consensus       245 ~~g~  248 (347)
T 2hcy_A          245 VSVS  248 (347)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            9983

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.13  E-value=4.4e-06  Score=70.96  Aligned_cols=99  Identities=16%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++|+|+||+|+||..+++.+...|++|++++|++++.+.... ..  .+ ...|..+.  .+.+.+...+ .+|+||+
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~g--~~-~~~~~~~~~~~~~~~~~~~~~~~D~vi~  215 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-AG--AW-QVINYREEDLVERLKEITGGKKVRVVYD  215 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HT--CS-EEEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC--CC-EEEECCCccHHHHHHHHhCCCCceEEEE
Confidence            47999999999999999999999999999999998766543322 11  11 12476652  1233333332 4999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |+|..       .       ....++.++..  ++++.+++.
T Consensus       216 ~~g~~-------~-------~~~~~~~l~~~--G~iv~~g~~  241 (327)
T 1qor_A          216 SVGRD-------T-------WERSLDCLQRR--GLMVSFGNS  241 (327)
T ss_dssp             CSCGG-------G-------HHHHHHTEEEE--EEEEECCCT
T ss_pred             CCchH-------H-------HHHHHHHhcCC--CEEEEEecC
Confidence            99821       1       23344444433  488888764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.13  E-value=3.8e-06  Score=71.58  Aligned_cols=101  Identities=15%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+++|+|+||+|+||..+++.+...|++|++++|++++.+........  + ...|..+.  .+.+.+...+.+|+||+|
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~  225 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF--D-GAIDYKNEDLAAGLKRECPKGIDVFFDN  225 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC--S-EEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC--C-EEEECCCHHHHHHHHHhcCCCceEEEEC
Confidence            579999999999999999999999999999999988776544121222  1 12466551  133333332249999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      +|..              .....++.++..  +++|.++...
T Consensus       226 ~g~~--------------~~~~~~~~l~~~--G~iv~~G~~~  251 (336)
T 4b7c_A          226 VGGE--------------ILDTVLTRIAFK--ARIVLCGAIS  251 (336)
T ss_dssp             SCHH--------------HHHHHHTTEEEE--EEEEECCCGG
T ss_pred             CCcc--------------hHHHHHHHHhhC--CEEEEEeecc
Confidence            9831              122333333333  4888887654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.13  E-value=4.8e-06  Score=71.23  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC---hHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG---SAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~---~~~~~~~~~~~~d~vi~  141 (252)
                      .+++|+|+||+|++|..+++.+...|++|+++++++++.+.........   ...|..+.   .+.+.+...+.+|+||+
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~---~~~d~~~~~~~~~~~~~~~~~~~d~vi~  231 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFD---DAFNYKEESDLTAALKRCFPNGIDIYFE  231 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCS---EEEETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCc---eEEecCCHHHHHHHHHHHhCCCCcEEEE
Confidence            4789999999999999999999999999999999877665432112111   12476541   12333332223999999


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      |+|
T Consensus       232 ~~g  234 (345)
T 2j3h_A          232 NVG  234 (345)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            987

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.11  E-value=7.8e-06  Score=70.28  Aligned_cols=100  Identities=16%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             CC--cEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEE
Q 025456           65 KQ--KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~--~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~v  139 (252)
                      .+  ++|+|+||+|+||..+++.+...|+ +|+++++++++.+.......  .+ ...|..+.  .+.+.+...+.+|+|
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g--~~-~~~d~~~~~~~~~~~~~~~~~~d~v  234 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELG--FD-AAINYKKDNVAEQLRESCPAGVDVY  234 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC--CS-EEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC--Cc-eEEecCchHHHHHHHHhcCCCCCEE
Confidence            46  8999999999999999999999999 99999998766554322111  11 23576651  123333332239999


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |+|+|.              ......++.++..  +++|.++..
T Consensus       235 i~~~G~--------------~~~~~~~~~l~~~--G~iv~~G~~  262 (357)
T 2zb4_A          235 FDNVGG--------------NISDTVISQMNEN--SHIILCGQI  262 (357)
T ss_dssp             EESCCH--------------HHHHHHHHTEEEE--EEEEECCCG
T ss_pred             EECCCH--------------HHHHHHHHHhccC--cEEEEECCc
Confidence            999982              1123334434433  488888764

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.10  E-value=5.7e-06  Score=70.46  Aligned_cols=99  Identities=16%  Similarity=0.137  Sum_probs=65.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++|+|+||+|+||..+++.+...|++|++++|++++.+.... ....   ...|..+.  .+.+.+...+ .+|+||+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g~~---~~~d~~~~~~~~~i~~~~~~~~~d~vi~  220 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-LGCH---HTINYSTQDFAEVVREITGGKGVDVVYD  220 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCS---EEEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCC---EEEECCCHHHHHHHHHHhCCCCCeEEEE
Confidence            57899999999999999999999999999999998766543322 1111   12476652  1334444432 4999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |+|..              .....++.++..  ++++.++..
T Consensus       221 ~~g~~--------------~~~~~~~~l~~~--G~iv~~g~~  246 (333)
T 1wly_A          221 SIGKD--------------TLQKSLDCLRPR--GMCAAYGHA  246 (333)
T ss_dssp             CSCTT--------------THHHHHHTEEEE--EEEEECCCT
T ss_pred             CCcHH--------------HHHHHHHhhccC--CEEEEEecC
Confidence            99841              122334444433  488888754

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.09  E-value=9.3e-06  Score=69.75  Aligned_cols=76  Identities=16%  Similarity=0.227  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++|+|+||+|++|..+++.+...|++|++++|++++.+.... ..  .. ...|..+.  .+.+.+...+ .+|+||+
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~g--a~-~~~d~~~~~~~~~~~~~~~~~~~D~vi~  245 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ-NG--AH-EVFNHREVNYIDKIKKYVGEKGIDIIIE  245 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TT--CS-EEEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH-cC--CC-EEEeCCCchHHHHHHHHcCCCCcEEEEE
Confidence            47899999999999999999999999999999998776653221 21  21 12466652  1334444442 4999999


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      |+|
T Consensus       246 ~~G  248 (351)
T 1yb5_A          246 MLA  248 (351)
T ss_dssp             SCH
T ss_pred             CCC
Confidence            998

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.08  E-value=1.8e-05  Score=69.54  Aligned_cols=90  Identities=20%  Similarity=0.209  Sum_probs=69.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag  144 (252)
                      +++|+|.|+ |.+|+.+++.|.+.|++|++++++++..+....   .++.++.+|.++ .+.+.++ +.+ .|+||.+.+
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~---~g~~vi~GDat~-~~~L~~agi~~-A~~viv~~~   77 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK---FGMKVFYGDATR-MDLLESAGAAK-AEVLINAID   77 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH---TTCCCEESCTTC-HHHHHHTTTTT-CSEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh---CCCeEEEcCCCC-HHHHHhcCCCc-cCEEEECCC
Confidence            467999997 999999999999999999999999987665432   467889999999 7877766 555 999998764


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCC
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      -             -.....++..+++.+.
T Consensus        78 ~-------------~~~n~~i~~~ar~~~p   94 (413)
T 3l9w_A           78 D-------------PQTNLQLTEMVKEHFP   94 (413)
T ss_dssp             S-------------HHHHHHHHHHHHHHCT
T ss_pred             C-------------hHHHHHHHHHHHHhCC
Confidence            1             2234456666666654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.07  E-value=8.5e-06  Score=70.03  Aligned_cols=99  Identities=8%  Similarity=0.016  Sum_probs=65.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++|+|+||+|+||..+++.+...|++|++++|++++.+.... ....   ...|..+.  .+.+.+...+ .+|+||+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~  237 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK-LGAA---AGFNYKKEDFSEATLKFTKGAGVNLILD  237 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTCS---EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCc---EEEecCChHHHHHHHHHhcCCCceEEEE
Confidence            47899999999999999999999999999999998776554321 1111   23466552  1334444432 3999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |+|..              .....++.++..  ++++.++..
T Consensus       238 ~~G~~--------------~~~~~~~~l~~~--G~iv~~G~~  263 (354)
T 2j8z_A          238 CIGGS--------------YWEKNVNCLALD--GRWVLYGLM  263 (354)
T ss_dssp             SSCGG--------------GHHHHHHHEEEE--EEEEECCCT
T ss_pred             CCCch--------------HHHHHHHhccCC--CEEEEEecc
Confidence            99841              022334444433  478887754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=98.05  E-value=1.4e-05  Score=65.33  Aligned_cols=103  Identities=21%  Similarity=0.291  Sum_probs=67.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc-------------------hhhhhc---cccCCCC--eEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL-------------------DKAKTT---LSKDNPS--LQIV  117 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~-------------------~~~~~~---~~~~~~~--~~~i  117 (252)
                      .+++++|+|.|+ |++|.++++.|++.|. ++++++++.                   .+.+..   +....+.  ++.+
T Consensus        28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            345789999996 8999999999999996 899888876                   232211   1111223  3444


Q ss_pred             EeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       118 ~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      ..++.  .+.+.+.+.+ +|+||.+..             |...-..+.++|++.++ .+|+.+..
T Consensus       107 ~~~~~--~~~~~~~~~~-~DvVi~~~d-------------~~~~~~~l~~~~~~~~~-p~i~~~~~  155 (249)
T 1jw9_B          107 NALLD--DAELAALIAE-HDLVLDCTD-------------NVAVRNQLNAGCFAAKV-PLVSGAAI  155 (249)
T ss_dssp             CSCCC--HHHHHHHHHT-SSEEEECCS-------------SHHHHHHHHHHHHHHTC-CEEEEEEE
T ss_pred             eccCC--HhHHHHHHhC-CCEEEEeCC-------------CHHHHHHHHHHHHHcCC-CEEEeeec
Confidence            44454  3456777888 999998864             12234566777887776 45565443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.03  E-value=3.4e-05  Score=65.51  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=66.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---cccC---CCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSKD---NPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      ..+++|.|+|+ |.+|..++..|+..|.  +|+++++++++.+..   +.+.   ...+.+...|        .+.+.+ 
T Consensus         7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~--------~~a~~~-   76 (326)
T 3vku_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE--------YSDAKD-   76 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC--------GGGGTT-
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc--------HHHhcC-
Confidence            35789999996 9999999999999886  899999987655411   1111   1234433222        135777 


Q ss_pred             CcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .|+||+++|...  ..+..+.++.|..-...+.+.+++.... .++.+|
T Consensus        77 aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt  125 (326)
T 3vku_A           77 ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             CSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred             CCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            999999999753  3345566788888888999998876543 455554

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.01  E-value=4.1e-05  Score=65.03  Aligned_cols=107  Identities=15%  Similarity=0.121  Sum_probs=73.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhh----cc---ccCCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKT----TL---SKDNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~----~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      +.++|.|+|+ |.+|..++..|+..|.  +|+++++++++.+.    +.   +-...++.+...|    .    +.+.+ 
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~----~----~a~~~-   73 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT----Y----EDCKD-   73 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC----G----GGGTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc----H----HHhCC-
Confidence            3679999996 9999999999999886  89999998765432    11   1011234443322    1    35677 


Q ss_pred             CcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .|+||.++|....  .+..+.+..|......+.+.+.+.... .++.+|
T Consensus        74 aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt  122 (326)
T 3pqe_A           74 ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT  122 (326)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence            9999999997542  223345678888888899988876543 455555

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.01  E-value=1.1e-06  Score=73.45  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=53.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCC----CeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP----SLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      ++++++++|+|++ ++|+++++.|+++| +|++..|+.++.++.......    .. .+.+|+.+ .   .+.+.+ +|+
T Consensus       125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~-~~~~d~~~-~---~~~~~~-~Di  196 (287)
T 1nvt_A          125 RVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-GEEVKFSG-L---DVDLDG-VDI  196 (287)
T ss_dssp             CCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-HHHEEEEC-T---TCCCTT-CCE
T ss_pred             CcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhccccc-ceeEEEee-H---HHhhCC-CCE
Confidence            4578999999985 99999999999999 999999988765543211000    00 12245544 1   234556 999


Q ss_pred             EEEcCCCCC
Q 025456          139 VVCATGFQP  147 (252)
Q Consensus       139 vi~~ag~~~  147 (252)
                      ||||+|...
T Consensus       197 lVn~ag~~~  205 (287)
T 1nvt_A          197 IINATPIGM  205 (287)
T ss_dssp             EEECSCTTC
T ss_pred             EEECCCCCC
Confidence            999998643

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.99  E-value=1.3e-05  Score=67.33  Aligned_cols=77  Identities=18%  Similarity=0.302  Sum_probs=55.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      .+++++++|+|+ |++|++++..|++.|. +|++..|+.++.+++.........    ++.+ .+++.+.+.+ +|+||+
T Consensus       138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~----~~~~-~~~~~~~~~~-aDivIn  210 (297)
T 2egg_A          138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS----AYFS-LAEAETRLAE-YDIIIN  210 (297)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC----CEEC-HHHHHHTGGG-CSEEEE
T ss_pred             CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC----ceee-HHHHHhhhcc-CCEEEE
Confidence            456899999997 8999999999999997 999999998776554321111110    1122 3456667777 999999


Q ss_pred             cCCCC
Q 025456          142 ATGFQ  146 (252)
Q Consensus       142 ~ag~~  146 (252)
                      +.+..
T Consensus       211 ~t~~~  215 (297)
T 2egg_A          211 TTSVG  215 (297)
T ss_dssp             CSCTT
T ss_pred             CCCCC
Confidence            98754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.97  E-value=1.4e-05  Score=66.71  Aligned_cols=77  Identities=21%  Similarity=0.314  Sum_probs=55.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhcccc---CCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~---~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      ..++++++|+|+ |++|++++..|++.|. +|+++.|+.++.+++...   ....+.+...++    +++.+.+.+ .|+
T Consensus       124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~----~~l~~~l~~-~Di  197 (283)
T 3jyo_A          124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA----RGIEDVIAA-ADG  197 (283)
T ss_dssp             TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS----TTHHHHHHH-SSE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH----HHHHHHHhc-CCE
Confidence            467899999998 9999999999999998 799999998876543221   111233333343    235566777 999


Q ss_pred             EEEcCCC
Q 025456          139 VVCATGF  145 (252)
Q Consensus       139 vi~~ag~  145 (252)
                      |||+...
T Consensus       198 VInaTp~  204 (283)
T 3jyo_A          198 VVNATPM  204 (283)
T ss_dssp             EEECSST
T ss_pred             EEECCCC
Confidence            9998753

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.96  E-value=2.4e-05  Score=66.07  Aligned_cols=80  Identities=20%  Similarity=0.339  Sum_probs=57.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecC---chhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRD---LDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~---~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      ..++++++|+|+ |+.|++++..|++.|. +|++..|+   .++.+++...  ...+..+...++.+ .+.+.+.+.+ .
T Consensus       145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~-l~~~~~~l~~-~  221 (312)
T 3t4e_A          145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD-QHAFTEALAS-A  221 (312)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHHH-C
T ss_pred             CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh-hhhhHhhccC-c
Confidence            457899999997 9999999999999998 89999999   6555443221  01123444456655 4445666777 9


Q ss_pred             cEEEEcCCC
Q 025456          137 EAVVCATGF  145 (252)
Q Consensus       137 d~vi~~ag~  145 (252)
                      |+|||+...
T Consensus       222 DiIINaTp~  230 (312)
T 3t4e_A          222 DILTNGTKV  230 (312)
T ss_dssp             SEEEECSST
T ss_pred             eEEEECCcC
Confidence            999998654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.95  E-value=1.6e-05  Score=68.03  Aligned_cols=99  Identities=15%  Similarity=0.128  Sum_probs=66.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++|+|+||+|++|..+++.+...|++|+++++++++.+.... ..  .+. ..|..+.  .+.+.+...+ .+|+||+
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g--a~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~  241 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA-LG--ADE-TVNYTHPDWPKEVRRLTGGKGADKVVD  241 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HT--CSE-EEETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cC--CCE-EEcCCcccHHHHHHHHhCCCCceEEEE
Confidence            57899999999999999999999999999999998776654322 11  111 2477652  1334444432 4999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      ++| ..      .       ....++.++..  ++++.+++.
T Consensus       242 ~~g-~~------~-------~~~~~~~l~~~--G~~v~~g~~  267 (343)
T 2eih_A          242 HTG-AL------Y-------FEGVIKATANG--GRIAIAGAS  267 (343)
T ss_dssp             SSC-SS------S-------HHHHHHHEEEE--EEEEESSCC
T ss_pred             CCC-HH------H-------HHHHHHhhccC--CEEEEEecC
Confidence            998 21      1       23444555444  488888765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.93  E-value=1.5e-05  Score=67.89  Aligned_cols=99  Identities=14%  Similarity=0.114  Sum_probs=66.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++|+|+||+|++|..+++.+...|++|+++++++++.+.... .... .  ..|..+.  .+.+.+...+ .+|+||+
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~ga~-~--~~~~~~~~~~~~~~~~~~~~g~D~vid  223 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE-YGAE-Y--LINASKEDILRQVLKFTNGKGVDASFD  223 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCS-E--EEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCc-E--EEeCCCchHHHHHHHHhCCCCceEEEE
Confidence            57999999999999999999999999999999998776653322 2221 1  2355441  2344444433 4999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |+|..              .....++.++..  +++|.++..
T Consensus       224 ~~g~~--------------~~~~~~~~l~~~--G~iv~~G~~  249 (334)
T 3qwb_A          224 SVGKD--------------TFEISLAALKRK--GVFVSFGNA  249 (334)
T ss_dssp             CCGGG--------------GHHHHHHHEEEE--EEEEECCCT
T ss_pred             CCChH--------------HHHHHHHHhccC--CEEEEEcCC
Confidence            99841              123344444443  488888754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.88  E-value=1.8e-05  Score=67.97  Aligned_cols=77  Identities=14%  Similarity=0.190  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+++|+|+||+|++|..+++.+...|++|+++++++++.+.... .... .  ..|..+.  .+.+.+...+.+|+||+|
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lGa~-~--~~~~~~~~~~~~~~~~~~~g~Dvvid~  242 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER-LGAK-R--GINYRSEDFAAVIKAETGQGVDIILDM  242 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCS-E--EEETTTSCHHHHHHHHHSSCEEEEEES
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCC-E--EEeCCchHHHHHHHHHhCCCceEEEEC
Confidence            47899999999999999999999999999999998877654322 1111 1  2455441  233444443249999999


Q ss_pred             CCC
Q 025456          143 TGF  145 (252)
Q Consensus       143 ag~  145 (252)
                      +|.
T Consensus       243 ~g~  245 (353)
T 4dup_A          243 IGA  245 (353)
T ss_dssp             CCG
T ss_pred             CCH
Confidence            984

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.88  E-value=2.4e-05  Score=66.90  Aligned_cols=100  Identities=18%  Similarity=0.198  Sum_probs=62.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~a  143 (252)
                      .+++|+|+||+|++|..+++.+...|++|+++++++++.+.... .... .++..+ .+..+.+.+...+ .+|+||+|+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~ga~-~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~  235 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS-VGAD-IVLPLE-EGWAKAVREATGGAGVDMVVDPI  235 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HTCS-EEEESS-TTHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCc-EEecCc-hhHHHHHHHHhCCCCceEEEECC
Confidence            47899999999999999999999999999999998876643322 1111 222222 2213445555543 499999999


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |..       .       ....++.++..  ++++.++..
T Consensus       236 g~~-------~-------~~~~~~~l~~~--G~iv~~G~~  259 (342)
T 4eye_A          236 GGP-------A-------FDDAVRTLASE--GRLLVVGFA  259 (342)
T ss_dssp             C---------C-------HHHHHHTEEEE--EEEEEC---
T ss_pred             chh-------H-------HHHHHHhhcCC--CEEEEEEcc
Confidence            842       0       22334434433  478887754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.87  E-value=1.5e-05  Score=67.62  Aligned_cols=77  Identities=17%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++|+|+||+|++|..+++.+...|++|+++++++++.+.... .... .  ..|..+.  .+.+.+...+ .+|+||+
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~Ga~-~--~~~~~~~~~~~~~~~~~~~~g~Dvvid  215 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA-LGAW-E--TIDYSHEDVAKRVLELTDGKKCPVVYD  215 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTCS-E--EEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCC-E--EEeCCCccHHHHHHHHhCCCCceEEEE
Confidence            47999999999999999999998899999999998876654322 1111 1  2455441  2344444442 4999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      |+|.
T Consensus       216 ~~g~  219 (325)
T 3jyn_A          216 GVGQ  219 (325)
T ss_dssp             SSCG
T ss_pred             CCCh
Confidence            9984

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.86  E-value=1.8e-05  Score=68.34  Aligned_cols=77  Identities=16%  Similarity=0.222  Sum_probs=56.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      .++++|+|+|+ |++|+.+++.|...|.+|++++|++++.+.........+..   +..+ .+.+.+.+.+ +|+||+++
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~DvVI~~~  238 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVEL---LYSN-SAEIETAVAE-ADLLIGAV  238 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEE---EECC-HHHHHHHHHT-CSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEe---eeCC-HHHHHHHHcC-CCEEEECC
Confidence            35689999999 99999999999999999999999987765432111112222   2234 4567777778 99999999


Q ss_pred             CCC
Q 025456          144 GFQ  146 (252)
Q Consensus       144 g~~  146 (252)
                      +..
T Consensus       239 ~~~  241 (361)
T 1pjc_A          239 LVP  241 (361)
T ss_dssp             CCT
T ss_pred             CcC
Confidence            764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.86  E-value=1.9e-05  Score=67.59  Aligned_cols=77  Identities=16%  Similarity=0.139  Sum_probs=54.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHc-CCCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIG-DDSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~-~~~d~vi  140 (252)
                      .+++|+|+||+|++|..+++.+... |++|+++++++++.+.... ....   ...|..+.  .+.+.+... +.+|+||
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi  245 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-AGAD---YVINASMQDPLAEIRRITESKGVDAVI  245 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-HTCS---EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCC---EEecCCCccHHHHHHHHhcCCCceEEE
Confidence            5789999999999999999999998 9999999998776543321 1111   12466551  123455543 2399999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      +++|.
T Consensus       246 ~~~g~  250 (347)
T 1jvb_A          246 DLNNS  250 (347)
T ss_dssp             ESCCC
T ss_pred             ECCCC
Confidence            99984

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=97.86  E-value=8.6e-06  Score=73.77  Aligned_cols=102  Identities=18%  Similarity=0.182  Sum_probs=60.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHH-HHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSE-AIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~-~~~~~~d~vi~  141 (252)
                      .+++++++|||| |++|++++..|++.|++|+++.|+.++.++........+    .++.|    +.+ .... +|+|||
T Consensus       361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~~----~~~~d----l~~~~~~~-~DilVN  430 (523)
T 2o7s_A          361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKA----LSLTD----LDNYHPED-GMVLAN  430 (523)
T ss_dssp             -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC-C----EETTT----TTTC--CC-SEEEEE
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCce----eeHHH----hhhccccC-ceEEEE
Confidence            356789999999 799999999999999999999999877655432221111    12323    111 1234 899999


Q ss_pred             cCCCCCC-----C--------CCCCcceehHHHH-HHHHHHHHhcCC
Q 025456          142 ATGFQPG-----W--------DLFAPWKVDNFGT-VNLVEACRKRGV  174 (252)
Q Consensus       142 ~ag~~~~-----~--------~~~~~~~~n~~g~-~~ll~~~~~~~~  174 (252)
                      |+|....     .        ++...+++|+.+. ..+++.+++.|.
T Consensus       431 ~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G~  477 (523)
T 2o7s_A          431 TTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGA  477 (523)
T ss_dssp             CSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTTC
T ss_pred             CCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCCC
Confidence            9986321     0        1223457777552 245566666664

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.85  E-value=1.3e-05  Score=68.78  Aligned_cols=96  Identities=19%  Similarity=0.170  Sum_probs=60.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCC-----C-eEEEeecCchh---hhhccccCC--CCeEEEEeeCCCChHHHHHHH
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKG-----F-AVKAGVRDLDK---AKTTLSKDN--PSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G-----~-~V~~~~r~~~~---~~~~~~~~~--~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      |++++|+|.||||.+|+.+++.|++++     + +|+.+.+..+.   .....+...  ..+.+  .|+ + .    +.+
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~--~~~-~-~----~~~   78 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVV--EPT-E-A----AVL   78 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBC--EEC-C-H----HHH
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeee--ccC-C-H----HHh
Confidence            346899999999999999999999987     4 67776543221   111111000  11222  122 2 2    235


Q ss_pred             cCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          133 GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      .+ +|+||.|.|...              +..+++.+ +.|+ ++|-.|+..
T Consensus        79 ~~-~DvVf~alg~~~--------------s~~~~~~~-~~G~-~vIDlSa~~  113 (352)
T 2nqt_A           79 GG-HDAVFLALPHGH--------------SAVLAQQL-SPET-LIIDCGADF  113 (352)
T ss_dssp             TT-CSEEEECCTTSC--------------CHHHHHHS-CTTS-EEEECSSTT
T ss_pred             cC-CCEEEECCCCcc--------------hHHHHHHH-hCCC-EEEEECCCc
Confidence            57 999999987432              34566777 7785 788888764

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=97.84  E-value=3.4e-05  Score=66.03  Aligned_cols=98  Identities=16%  Similarity=0.139  Sum_probs=64.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~~  142 (252)
                      +++++|+||+|++|...++.+...|++|+++++++++.+.... ..  .+. ..|..+.  .+.+.+...+ .+|+||+|
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-~G--a~~-~~~~~~~~~~~~v~~~~~~~g~D~vid~  240 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD-IG--AAH-VLNEKAPDFEATLREVMKAEQPRIFLDA  240 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH-HT--CSE-EEETTSTTHHHHHHHHHHHHCCCEEEES
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC--CCE-EEECCcHHHHHHHHHHhcCCCCcEEEEC
Confidence            4899999999999999999888899999999998876654322 11  111 2354441  2344444432 39999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +|..              .....++.++..  ++++.+++.
T Consensus       241 ~g~~--------------~~~~~~~~l~~~--G~iv~~G~~  265 (349)
T 3pi7_A          241 VTGP--------------LASAIFNAMPKR--ARWIIYGRL  265 (349)
T ss_dssp             SCHH--------------HHHHHHHHSCTT--CEEEECCCS
T ss_pred             CCCh--------------hHHHHHhhhcCC--CEEEEEecc
Confidence            9831              123444544433  589988754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.83  E-value=8.2e-06  Score=60.84  Aligned_cols=71  Identities=18%  Similarity=0.310  Sum_probs=52.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +++|+|+|+ |.+|+.+++.|.+.|++|++.+|++++.+++.....  ....  +.    +++.+.+.+ +|+||.+.+.
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~--~~~~--~~----~~~~~~~~~-~Divi~at~~   90 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE--YEYV--LI----NDIDSLIKN-NDVIITATSS   90 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT--CEEE--EC----SCHHHHHHT-CSEEEECSCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC--CceE--ee----cCHHHHhcC-CCEEEEeCCC
Confidence            789999996 999999999999999999999999887654332111  2221  22    235566777 9999999875


Q ss_pred             C
Q 025456          146 Q  146 (252)
Q Consensus       146 ~  146 (252)
                      .
T Consensus        91 ~   91 (144)
T 3oj0_A           91 K   91 (144)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.83  E-value=1.5e-05  Score=63.15  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=48.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ++|+|+||+|.+|+++++.|++.|++|++.+|++++.+.........+.  ..|+.  .+++.+.+.+ +|+||++..
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~-~D~Vi~~~~   73 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAG--DASIT--GMKNEDAAEA-CDIAVLTIP   73 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHS--SCCEE--EEEHHHHHHH-CSEEEECSC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccc--cCCCC--hhhHHHHHhc-CCEEEEeCC
Confidence            4799999999999999999999999999999987765443211000000  01111  1123445667 899999875

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.82  E-value=5.9e-05  Score=64.25  Aligned_cols=71  Identities=17%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag  144 (252)
                      .++++|.|+ |.+|+.++++|.++|+ |++++++++..+ ...   .++.++.+|.+| ++.++++ +.+ .|.||.+.+
T Consensus       115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~---~~~~~i~gd~~~-~~~L~~a~i~~-a~~vi~~~~  186 (336)
T 1lnq_A          115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLR---SGANFVHGDPTR-VSDLEKANVRG-ARAVIVDLE  186 (336)
T ss_dssp             -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH---TTCEEEESCTTS-HHHHHHTCSTT-EEEEEECCS
T ss_pred             cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh---CCcEEEEeCCCC-HHHHHhcChhh-ccEEEEcCC
Confidence            358999997 9999999999999999 999999887766 322   578999999999 7878776 666 999997764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.82  E-value=1.7e-05  Score=65.65  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCC--CCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ..++++++|+|+ |++|++++..|++.|++|++..|+.++.+++.....  ..+.  ..|+.+    +.+  .+ +|+||
T Consensus       116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~--~~~~~~----~~~--~~-~DivI  185 (272)
T 1p77_A          116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQ--AVSMDS----IPL--QT-YDLVI  185 (272)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEE--EEEGGG----CCC--SC-CSEEE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeE--EeeHHH----hcc--CC-CCEEE
Confidence            456899999998 899999999999999999999999877654432111  1222  234322    111  35 99999


Q ss_pred             EcCCCCC
Q 025456          141 CATGFQP  147 (252)
Q Consensus       141 ~~ag~~~  147 (252)
                      ++++...
T Consensus       186 n~t~~~~  192 (272)
T 1p77_A          186 NATSAGL  192 (272)
T ss_dssp             ECCCC--
T ss_pred             ECCCCCC
Confidence            9987643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.81  E-value=2.3e-05  Score=66.92  Aligned_cols=77  Identities=13%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+++|+|+||+|++|..+++.+...|++|+++++++++.+.... .....   ..|..+.  .+.+.+...+ .+|+||+
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lga~~---~~~~~~~~~~~~~~~~~~~~g~Dvvid  219 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-LGAAY---VIDTSTAPLYETVMELTNGIGADAAID  219 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTCSE---EEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-CCCcE---EEeCCcccHHHHHHHHhCCCCCcEEEE
Confidence            47899999999999999999888889999999998876553322 11111   2355441  2334444433 4999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      |+|.
T Consensus       220 ~~g~  223 (340)
T 3gms_A          220 SIGG  223 (340)
T ss_dssp             SSCH
T ss_pred             CCCC
Confidence            9983

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.80  E-value=4.5e-05  Score=63.94  Aligned_cols=74  Identities=23%  Similarity=0.214  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|+||+|++|..+++.+...|++|+++++++++.+.... .  +.+. ..|..+ .+++.+.+.+ +|+||+ +|
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~--ga~~-~~~~~~-~~~~~~~~~~-~d~vid-~g  197 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-L--GAEE-AATYAE-VPERAKAWGG-LDLVLE-VR  197 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-T--TCSE-EEEGGG-HHHHHHHTTS-EEEEEE-CS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-c--CCCE-EEECCc-chhHHHHhcC-ceEEEE-CC
Confidence            47899999999999999999998899999999998776543322 1  1221 135432 1344445567 999999 87


Q ss_pred             C
Q 025456          145 F  145 (252)
Q Consensus       145 ~  145 (252)
                      .
T Consensus       198 ~  198 (302)
T 1iz0_A          198 G  198 (302)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.79  E-value=7e-05  Score=64.98  Aligned_cols=105  Identities=17%  Similarity=0.165  Sum_probs=69.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+++|+|+|+ |.||+.+++.+...|.+|++.+|++++.+.........+   ..+..+ .+.+.+.+.+ +|+||++
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~---~~~~~~-~~~l~~~l~~-aDvVi~~  238 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRI---HTRYSS-AYELEGAVKR-ADLVIGA  238 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSS---EEEECC-HHHHHHHHHH-CSEEEEC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCee---EeccCC-HHHHHHHHcC-CCEEEEC
Confidence            356899999998 999999999999999999999999876543221112222   233444 5567777888 9999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      ++.... +....+      ....++.++. + ..+|.+|+
T Consensus       239 ~~~p~~-~t~~li------~~~~l~~mk~-g-~~iV~va~  269 (377)
T 2vhw_A          239 VLVPGA-KAPKLV------SNSLVAHMKP-G-AVLVDIAI  269 (377)
T ss_dssp             CCCTTS-CCCCCB------CHHHHTTSCT-T-CEEEEGGG
T ss_pred             CCcCCC-CCccee------cHHHHhcCCC-C-cEEEEEec
Confidence            875432 111111      1233344443 2 47888885

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.77  E-value=0.00013  Score=61.86  Aligned_cols=110  Identities=16%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc---ccc----CCCCeEEEEeeCCCChHHHHHHHcC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT---LSK----DNPSLQIVKADVTEGSAKLSEAIGD  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~---~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~  134 (252)
                      .|++++|.|+|+ |.+|..++..|+..|+ +|+++++++++.+..   +.+    ......+...  .|    . +++.+
T Consensus         4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t--~d----~-~a~~~   75 (324)
T 3gvi_A            4 SMARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA--ND----Y-AAIEG   75 (324)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SS----G-GGGTT
T ss_pred             CCcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe--CC----H-HHHCC
Confidence            456789999998 9999999999999998 999999988664311   110    0012222211  12    1 46778


Q ss_pred             CCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          135 DSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       135 ~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                       .|+||.++|...  ..+..+.+..|..-...+.+.+.+.... .++.+|
T Consensus        76 -aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt  124 (324)
T 3gvi_A           76 -ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT  124 (324)
T ss_dssp             -CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             -CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence             999999998654  2234455677888888888888776533 555555

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.76  E-value=9.4e-05  Score=65.48  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=36.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~  106 (252)
                      .+++|+|+||+|+||...++.+...|.+|+++++++++.+..
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~  261 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV  261 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            579999999999999999999988999999999887766543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.75  E-value=7.3e-05  Score=63.06  Aligned_cols=108  Identities=17%  Similarity=0.121  Sum_probs=68.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhcc---ccC----CCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTL---SKD----NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~---~~~----~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      +++|.|+|| |.+|..++..|+..|+ +|+++++++++.+...   ...    .....+...  +|    . +.+.+ .|
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~-~a~~~-aD   72 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NN----Y-ADTAN-SD   72 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC----G-GGGTT-CS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CC----H-HHHCC-CC
Confidence            368999998 9999999999999996 8988888876543211   100    111222110  12    2 35778 99


Q ss_pred             EEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       138 ~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +||.++|....  .+..+....|......+.+.+.+.....+|.+.|
T Consensus        73 ~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  119 (309)
T 1ur5_A           73 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  119 (309)
T ss_dssp             EEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence            99999987542  2223344667777788888888776555555444

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.74  E-value=0.00012  Score=63.01  Aligned_cols=98  Identities=16%  Similarity=0.152  Sum_probs=67.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|+|+ |.+|..+++.+...|++|+++++++++.+.......  .+. ..|..+ .+.+.+...+ +|+||+++|
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lG--a~~-v~~~~~-~~~~~~~~~~-~D~vid~~g  260 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFG--ADS-FLVSRD-QEQMQAAAGT-LDGIIDTVS  260 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSC--CSE-EEETTC-HHHHHHTTTC-EEEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcC--Cce-EEeccC-HHHHHHhhCC-CCEEEECCC
Confidence            5889999996 999999999988899999999998876654321122  211 246666 6667766666 999999998


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      ....             ....++.++..  +++|.+++.
T Consensus       261 ~~~~-------------~~~~~~~l~~~--G~iv~~g~~  284 (366)
T 1yqd_A          261 AVHP-------------LLPLFGLLKSH--GKLILVGAP  284 (366)
T ss_dssp             SCCC-------------SHHHHHHEEEE--EEEEECCCC
T ss_pred             cHHH-------------HHHHHHHHhcC--CEEEEEccC
Confidence            5310             12334444443  488888764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.73  E-value=4e-05  Score=66.04  Aligned_cols=100  Identities=18%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+++|+|+||+|++|..+++.+...|++|+++++++++.+.... ..  .+. ..|..+.  .+.+.+...+.+|+||+|
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~G--a~~-~~~~~~~~~~~~~~~~~~~g~D~vid~  238 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LG--CDR-PINYKTEPVGTVLKQEYPEGVDVVYES  238 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TT--CSE-EEETTTSCHHHHHHHHCTTCEEEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-cC--CcE-EEecCChhHHHHHHHhcCCCCCEEEEC
Confidence            57899999999999999999999999999999998766543322 21  221 2354441  123333322239999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      +|.              ......++.++..  +++|.+++..
T Consensus       239 ~g~--------------~~~~~~~~~l~~~--G~iv~~g~~~  264 (362)
T 2c0c_A          239 VGG--------------AMFDLAVDALATK--GRLIVIGFIS  264 (362)
T ss_dssp             SCT--------------HHHHHHHHHEEEE--EEEEECCCGG
T ss_pred             CCH--------------HHHHHHHHHHhcC--CEEEEEeCCC
Confidence            982              1233445555544  4898888753

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.72  E-value=0.00015  Score=61.01  Aligned_cols=37  Identities=30%  Similarity=0.492  Sum_probs=31.9

Q ss_pred             CCCcE-EEEE-cCC-----------------ChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           64 VKQKK-IFVA-GAT-----------------GSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        64 ~~~~~-vlVt-Gat-----------------G~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      +.|++ |+|| |||                 |-.|.++++.++++|++|+++.+..
T Consensus        34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~   89 (313)
T 1p9o_A           34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR   89 (313)
T ss_dssp             HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCC
Confidence            45777 9998 556                 8899999999999999999998864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.72  E-value=4.9e-05  Score=63.09  Aligned_cols=71  Identities=13%  Similarity=0.227  Sum_probs=53.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      +.++++++|+|+ |++|++++..|++.|. +|++..|+.++.+++..    .+..+     . .+++.+.+.+ .|+||+
T Consensus       114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~----~~~~~-----~-~~~~~~~~~~-aDiVIn  181 (277)
T 3don_A          114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWSL----NINKI-----N-LSHAESHLDE-FDIIIN  181 (277)
T ss_dssp             TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS----CCEEE-----C-HHHHHHTGGG-CSEEEE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH----hcccc-----c-HhhHHHHhcC-CCEEEE
Confidence            356899999997 8999999999999998 89999999887665432    22221     2 3446666777 999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      +...
T Consensus       182 aTp~  185 (277)
T 3don_A          182 TTPA  185 (277)
T ss_dssp             CCC-
T ss_pred             CccC
Confidence            8643

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.71  E-value=0.00028  Score=60.30  Aligned_cols=112  Identities=16%  Similarity=0.140  Sum_probs=72.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecCchhh--h---hccccC-CCC-eEEEEeeCCCChHHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDKA--K---TTLSKD-NPS-LQIVKADVTEGSAKL  128 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~--~---~~~~~~-~~~-~~~i~~Dl~d~~~~~  128 (252)
                      +++..||.|+||+|+||+.++-.|+....       ++.+++..+...  +   ..+... .+. ..++.   ++   ..
T Consensus        21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~---~~---~~   94 (345)
T 4h7p_A           21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV---TA---DP   94 (345)
T ss_dssp             -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE---ES---CH
T ss_pred             CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE---cC---Ch
Confidence            44567999999999999999988877532       688887765321  1   111111 111 12222   22   13


Q ss_pred             HHHHcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcC-CC-EEEEEc
Q 025456          129 SEAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG-VN-RFILIS  181 (252)
Q Consensus       129 ~~~~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~-~~-~~v~~S  181 (252)
                      .+++.+ .|+||-.||...  ..+..+.++.|..-...+.+.+.+.. .. +++.+|
T Consensus        95 ~~a~~~-advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvs  150 (345)
T 4h7p_A           95 RVAFDG-VAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVG  150 (345)
T ss_dssp             HHHTTT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             HHHhCC-CCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeC
Confidence            567888 999999999754  34555668889988888998887643 22 455555

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.69  E-value=0.00051  Score=58.45  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=69.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhcc---cc------CCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTL---SK------DNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~---~~------~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      .++|.|+|| |.+|..++..|+..|+ +|++.+++++..+...   ..      ...++..     +   .++.+++.+ 
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-----t---~d~~ea~~~-   78 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-----E---YSYEAALTG-   78 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-----E---CSHHHHHTT-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-----e---CCHHHHhCC-
Confidence            479999998 9999999999999998 9999999876554311   00      0111211     1   224456788 


Q ss_pred             CcEEEEcCCCCCCC-------CCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          136 SEAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       136 ~d~vi~~ag~~~~~-------~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      .|+||.++|.....       +.......|..-...+.+.+.+....-++.+.|
T Consensus        79 aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  132 (331)
T 1pzg_A           79 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  132 (331)
T ss_dssp             CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence            99999999865422       223334566666777888887765333443333

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.68  E-value=0.0001  Score=63.02  Aligned_cols=96  Identities=14%  Similarity=0.082  Sum_probs=62.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+|+|+||+|.+|..+++.+...|++|+++ +++++.+....   -+.+.  .| .+.  .+.+.+...+ .+|+||+
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~---lGa~~--i~-~~~~~~~~~~~~~~~~g~D~vid  222 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRD---LGATP--ID-ASREPEDYAAEHTAGQGFDLVYD  222 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHH---HTSEE--EE-TTSCHHHHHHHHHTTSCEEEEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHH---cCCCE--ec-cCCCHHHHHHHHhcCCCceEEEE
Confidence            47899999999999999999999999999988 77665543221   12333  44 331  2344444442 4999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      ++|..              .....++.++..  +++|.++..
T Consensus       223 ~~g~~--------------~~~~~~~~l~~~--G~iv~~g~~  248 (343)
T 3gaz_A          223 TLGGP--------------VLDASFSAVKRF--GHVVSCLGW  248 (343)
T ss_dssp             SSCTH--------------HHHHHHHHEEEE--EEEEESCCC
T ss_pred             CCCcH--------------HHHHHHHHHhcC--CeEEEEccc
Confidence            99831              123344444433  478877654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.67  E-value=0.00011  Score=62.61  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=65.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+++|+|+|| |++|..+++.+...|++|+++++++++.+.... .  +++. ..|..+.  .+.+.+...+ +|+||++
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l--Ga~~-~~d~~~~~~~~~~~~~~~~-~d~vid~  237 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-L--GADL-VVNPLKEDAAKFMKEKVGG-VHAAVVT  237 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-T--TCSE-EECTTTSCHHHHHHHHHSS-EEEEEES
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-C--CCCE-EecCCCccHHHHHHHHhCC-CCEEEEC
Confidence            5789999999 789999999998899999999998876654322 1  1221 2466541  1334444456 9999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +|..             ......++.++..  ++++.+++.
T Consensus       238 ~g~~-------------~~~~~~~~~l~~~--G~~v~~g~~  263 (339)
T 1rjw_A          238 AVSK-------------PAFQSAYNSIRRG--GACVLVGLP  263 (339)
T ss_dssp             SCCH-------------HHHHHHHHHEEEE--EEEEECCCC
T ss_pred             CCCH-------------HHHHHHHHHhhcC--CEEEEeccc
Confidence            9831             1233444444443  478887654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.67  E-value=0.00029  Score=59.87  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=74.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---cccC---CCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSKD---NPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      ..++|.|+|+ |.+|..++..|+.+|.  +|++++++.++.+..   +.+.   .....++..  .| .    +.+.+ .
T Consensus        18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d-~----~~~~~-a   88 (331)
T 4aj2_A           18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KD-Y----SVTAN-S   88 (331)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SS-G----GGGTT-E
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CC-H----HHhCC-C
Confidence            4789999997 9999999999999886  899999987654321   1101   111222222  12 2    24777 9


Q ss_pred             cEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          137 EAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       137 d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      |+||.++|...  ..+..+.+..|..-...+.+.+++... ..++.+|
T Consensus        89 DiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt  136 (331)
T 4aj2_A           89 KLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS  136 (331)
T ss_dssp             EEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            99999999754  345567788898888888888877653 3555555

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=97.67  E-value=2.1e-05  Score=59.62  Aligned_cols=68  Identities=9%  Similarity=0.106  Sum_probs=48.4

Q ss_pred             ChHHHHHHHHHHHCCCeEEEeecCchhhh------hccccCCCCeEEEEeeCCCCh--HHHHHHHc------CCCcEEEE
Q 025456           76 GSSGKRIVEQLLAKGFAVKAGVRDLDKAK------TTLSKDNPSLQIVKADVTEGS--AKLSEAIG------DDSEAVVC  141 (252)
Q Consensus        76 G~iG~~l~~~L~~~G~~V~~~~r~~~~~~------~~~~~~~~~~~~i~~Dl~d~~--~~~~~~~~------~~~d~vi~  141 (252)
                      |.++.++++.|+++|++|++..|+.....      +.....+.++..+.+|+++ +  +++.+++.      ++ |++||
T Consensus        26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~-~~~~~v~~~~~~i~~~~G~-dVLVn  103 (157)
T 3gxh_A           26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQN-PKVEDVEAFFAAMDQHKGK-DVLVH  103 (157)
T ss_dssp             BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTS-CCHHHHHHHHHHHHHTTTS-CEEEE
T ss_pred             CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCC-CCHHHHHHHHHHHHhcCCC-CEEEE
Confidence            57889999999999999998877654321      1122233456777899998 5  66665543      34 99999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      |+|.
T Consensus       104 nAgg  107 (157)
T 3gxh_A          104 CLAN  107 (157)
T ss_dssp             CSBS
T ss_pred             CCCC
Confidence            9985

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.65  E-value=0.00044  Score=57.66  Aligned_cols=102  Identities=17%  Similarity=0.255  Sum_probs=66.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc------------------hhhh---hccccCCC--CeEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL------------------DKAK---TTLSKDNP--SLQIVK  118 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~------------------~~~~---~~~~~~~~--~~~~i~  118 (252)
                      .+++.+|+|.|+ |++|.++++.|++.|. ++++++++.                  .+.+   +.+....+  +++.+.
T Consensus        33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~  111 (292)
T 3h8v_A           33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHN  111 (292)
T ss_dssp             GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEec
Confidence            456789999997 9999999999999985 788887764                  1111   11111123  344455


Q ss_pred             eeCCCChHHHHHHH-----------cCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          119 ADVTEGSAKLSEAI-----------GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       119 ~Dl~d~~~~~~~~~-----------~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      .++++ .+.+.+.+           .+ +|+||.+..             |...-..+-++|.+.++ .+|+.+
T Consensus       112 ~~l~~-~~~~~~~~~~~~~~~l~~~~~-~DlVid~~D-------------n~~~R~~in~~c~~~~~-Pli~~g  169 (292)
T 3h8v_A          112 YNITT-VENFQHFMDRISNGGLEEGKP-VDLVLSCVD-------------NFEARMTINTACNELGQ-TWMESG  169 (292)
T ss_dssp             CCTTS-HHHHHHHHHHHHHBSSSTTBC-CSEEEECCS-------------SHHHHHHHHHHHHHHTC-CEEEEE
T ss_pred             ccCCc-HHHHHHHhhhhcccccccCCC-CCEEEECCc-------------chhhhhHHHHHHHHhCC-CEEEee
Confidence            56655 45555554           45 899997753             34444567778888886 466543

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.65  E-value=0.00019  Score=60.59  Aligned_cols=110  Identities=19%  Similarity=0.184  Sum_probs=72.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc--hhhhh----cccc---CCCCeEEEEeeCCCChHHHHHHH
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL--DKAKT----TLSK---DNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~--~~~~~----~~~~---~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      +++.++|.|+|+ |.+|..++..|+..|+ +|+++++++  +..+.    +...   ......+...+  |     .+.+
T Consensus         5 ~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~--d-----~~a~   76 (315)
T 3tl2_A            5 TIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTS--D-----YADT   76 (315)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEES--C-----GGGG
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcC--C-----HHHh
Confidence            345679999997 9999999999999999 999999983  33221    1100   00111222111  1     1356


Q ss_pred             cCCCcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          133 GDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .+ .|+||.++|....  .+..+.+..|..-...+.+.+.+.+.. .++.+|
T Consensus        77 ~~-aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs  127 (315)
T 3tl2_A           77 AD-SDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT  127 (315)
T ss_dssp             TT-CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CC-CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence            77 9999999997542  233455677888888888888776543 555555

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.64  E-value=7.2e-05  Score=66.62  Aligned_cols=73  Identities=25%  Similarity=0.377  Sum_probs=59.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~a  143 (252)
                      .|+|+|.|+ |-+|+++++.|.++|++|++++++++..+....  .-++.++.+|-++ ++.++++ ++. .|++|-+.
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~--~~~~~~i~Gd~~~-~~~L~~Agi~~-ad~~ia~t   76 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQD--KYDLRVVNGHASH-PDVLHEAGAQD-ADMLVAVT   76 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHH--HSSCEEEESCTTC-HHHHHHHTTTT-CSEEEECC
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--hcCcEEEEEcCCC-HHHHHhcCCCc-CCEEEEEc
Confidence            578999998 999999999999999999999999887765432  1357899999999 7877776 444 99988544

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.64  E-value=9.1e-05  Score=61.30  Aligned_cols=73  Identities=22%  Similarity=0.303  Sum_probs=51.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCC-CCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDN-PSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      +.++++++|+|+ |++|++++..|++.|. +|++..|+.++.+++..... ..+..+  ++.+    +..  .+ .|+||
T Consensus       117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~--~~~~----l~~--~~-~DivI  186 (272)
T 3pwz_A          117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRIS--RYEA----LEG--QS-FDIVV  186 (272)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEE--CSGG----GTT--CC-CSEEE
T ss_pred             CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEe--eHHH----hcc--cC-CCEEE
Confidence            457899999997 8999999999999995 99999999887665432111 123332  2222    222  45 99999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      |+...
T Consensus       187 naTp~  191 (272)
T 3pwz_A          187 NATSA  191 (272)
T ss_dssp             ECSSG
T ss_pred             ECCCC
Confidence            98643

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.63  E-value=0.00022  Score=60.44  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh---ccccC----CCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT---TLSKD----NPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~---~~~~~----~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      |++++|.|+|+ |.+|..++..|+..|. +|+++++++++.+.   .+.+.    .....+...  .|     .+++.+ 
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d-----~~a~~~-   73 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--ND-----YKDLEN-   73 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC-----GGGGTT-
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CC-----HHHHCC-
Confidence            34689999995 9999999999999887 99999998866431   11110    112222211  12     146778 


Q ss_pred             CcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .|+||.++|....  .+..+.+..|......+.+.+.+.... .++.+|
T Consensus        74 aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt  122 (321)
T 3p7m_A           74 SDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT  122 (321)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence            9999999987542  223344567888888888888776533 555554

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.63  E-value=7.1e-05  Score=62.26  Aligned_cols=72  Identities=17%  Similarity=0.263  Sum_probs=51.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCC--CCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      ++++++++|+|+ |++|++++..|++.|. +|++..|+.++.+++.....  ..+..+  ++.+    +.   .+ .|+|
T Consensus       123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~--~~~~----l~---~~-aDiI  191 (281)
T 3o8q_A          123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQ--AFEQ----LK---QS-YDVI  191 (281)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEE--EGGG----CC---SC-EEEE
T ss_pred             CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEe--eHHH----hc---CC-CCEE
Confidence            457899999997 8999999999999996 99999999877654332111  123332  3322    11   45 9999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |++...
T Consensus       192 InaTp~  197 (281)
T 3o8q_A          192 INSTSA  197 (281)
T ss_dssp             EECSCC
T ss_pred             EEcCcC
Confidence            998754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.62  E-value=0.00031  Score=57.36  Aligned_cols=104  Identities=19%  Similarity=0.301  Sum_probs=65.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCch-------------------hhhh---ccccCCCCeEE--E
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD-------------------KAKT---TLSKDNPSLQI--V  117 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~-------------------~~~~---~~~~~~~~~~~--i  117 (252)
                      .+++.+|+|.|+ |++|.++++.|+..|. ++++++++.=                   +.+.   .+....+.+++  +
T Consensus        25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            345789999997 8899999999999996 6777766531                   1110   01111233333  3


Q ss_pred             EeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       118 ~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      ..++.  .+.+.+.+.+ +|+||.+..             |...-..+-++|++.++ .+|+.+..+
T Consensus       104 ~~~~~--~~~~~~~~~~-~DvVi~~~d-------------~~~~r~~l~~~~~~~~~-p~i~~~~~g  153 (251)
T 1zud_1          104 QQRLT--GEALKDAVAR-ADVVLDCTD-------------NMATRQEINAACVALNT-PLITASAVG  153 (251)
T ss_dssp             CSCCC--HHHHHHHHHH-CSEEEECCS-------------SHHHHHHHHHHHHHTTC-CEEEEEEEB
T ss_pred             eccCC--HHHHHHHHhc-CCEEEECCC-------------CHHHHHHHHHHHHHhCC-CEEEEeccc
Confidence            33343  3567777888 999998853             22334566677788776 466665443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.61  E-value=0.00031  Score=58.73  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=71.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhh---cccc----CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKT---TLSK----DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~---~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      |+|.|+|+ |.+|..++..|+..|.  +|+++++++++.+.   .+..    ......+...  +|     .+++.+ .|
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d-----~~a~~~-aD   71 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD-----YSLLKG-SE   71 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC-----GGGGTT-CS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC-----HHHhCC-CC
Confidence            58999999 9999999999999887  89999999876531   0100    1122233221  11     346778 99


Q ss_pred             EEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      +||.++|....  .+..+.+..|..-...+.+.+.+.+. ..++.+|
T Consensus        72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs  118 (294)
T 1oju_A           72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            99999997542  23334567788778888888887654 3555555

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.60  E-value=0.00015  Score=62.52  Aligned_cols=72  Identities=21%  Similarity=0.300  Sum_probs=51.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc---hhhhhccccCCCCeEEEEeeCCC-ChHHHHHHHcCCCcEEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL---DKAKTTLSKDNPSLQIVKADVTE-GSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~i~~Dl~d-~~~~~~~~~~~~~d~vi~  141 (252)
                      +++|+|+|| |++|..+++.+...|++|+++++++   ++.+....   -+++.+  | .+ ..+.+.+.-.+ +|+||+
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~---~ga~~v--~-~~~~~~~~~~~~~~-~d~vid  252 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEE---TKTNYY--N-SSNGYDKLKDSVGK-FDVIID  252 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHH---HTCEEE--E-CTTCSHHHHHHHCC-EEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHH---hCCcee--c-hHHHHHHHHHhCCC-CCEEEE
Confidence            899999999 9999999999888999999999987   65532211   134444  5 32 12344442245 999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      ++|.
T Consensus       253 ~~g~  256 (366)
T 2cdc_A          253 ATGA  256 (366)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.60  E-value=0.00026  Score=59.75  Aligned_cols=106  Identities=13%  Similarity=0.148  Sum_probs=70.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---ccc----CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSK----DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      |+|.|+|+ |.+|..++..|+..|.  +|+++++++++.+..   +.+    ......+...|  +     .+.+.+ .|
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~-----~~a~~~-aD   71 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D-----YGPTED-SD   71 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S-----SGGGTT-CS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C-----HHHhCC-CC
Confidence            57999997 9999999999999886  899999988654311   110    01223333222  1     135777 99


Q ss_pred             EEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      +||.++|...  ..+..+.+..|..-...+.+.+.+.... .++.+|
T Consensus        72 vVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt  118 (314)
T 3nep_X           72 VCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA  118 (314)
T ss_dssp             EEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred             EEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence            9999999754  2344556778888888889988877543 455555

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.57  E-value=0.00046  Score=58.19  Aligned_cols=109  Identities=19%  Similarity=0.164  Sum_probs=71.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC-C--CeEEEeecCchhhh---hccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK-G--FAVKAGVRDLDKAK---TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~-G--~~V~~~~r~~~~~~---~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ++|.|+||+|.+|..++..|..+ +  .+++++++++ +.+   ..+.+......+....-++    ..+.+.+ .|+||
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~----~~~~~~~-aDivi   74 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGED----ATPALEG-ADVVL   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSC----CHHHHTT-CSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCC----cHHHhCC-CCEEE
Confidence            58999999999999999998875 5  5789888875 221   1111111222222110012    2456788 99999


Q ss_pred             EcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          141 CATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       141 ~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .++|...  ..+..+.++.|..-...+.+.+.+.... .++.+|
T Consensus        75 i~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt  118 (312)
T 3hhp_A           75 ISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT  118 (312)
T ss_dssp             ECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence            9999754  2344456778888888888888776533 555555

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.57  E-value=0.0002  Score=61.36  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=59.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEE-EEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQI-VKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      +++|.|.||+|.+|+.+++.|.+++. +++.+.+..+...+ +......+.- ...++.+ .+   + +.+ +|+||.|+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~-~~~~~~~~~g~~~~~~~~-~~---~-~~~-vDvV~~a~   76 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP-VHFVHPNLRGRTNLKFVP-PE---K-LEP-ADILVLAL   76 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB-GGGTCGGGTTTCCCBCBC-GG---G-CCC-CSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch-hHHhCchhcCcccccccc-hh---H-hcC-CCEEEEcC
Confidence            57999999999999999999998764 77777664332211 1110000000 0112223 22   2 467 99999998


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |..              ....+++.+.++|+ ++|-.|+.
T Consensus        77 g~~--------------~s~~~a~~~~~aG~-~VId~Sa~  101 (345)
T 2ozp_A           77 PHG--------------VFAREFDRYSALAP-VLVDLSAD  101 (345)
T ss_dssp             CTT--------------HHHHTHHHHHTTCS-EEEECSST
T ss_pred             CcH--------------HHHHHHHHHHHCCC-EEEEcCcc
Confidence            743              14556666777886 78888874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.57  E-value=0.00013  Score=62.41  Aligned_cols=76  Identities=13%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC-hHHHHHHHcCCCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~~~~~~~~~~~~d~vi~~a  143 (252)
                      .+.+|+|+||+|.+|...++.+...|++|+++++++++.+.... .... .+  .|..++ .+.+.+.-.+.+|+||+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~-~v--i~~~~~~~~~~~~~~~~g~Dvv~d~~  225 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK-MGAD-IV--LNHKESLLNQFKTQGIELVDYVFCTF  225 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH-HTCS-EE--ECTTSCHHHHHHHHTCCCEEEEEESS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCc-EE--EECCccHHHHHHHhCCCCccEEEECC
Confidence            48999999999999999999888899999999998776554322 1111 11  233221 2344444221499999998


Q ss_pred             C
Q 025456          144 G  144 (252)
Q Consensus       144 g  144 (252)
                      |
T Consensus       226 g  226 (346)
T 3fbg_A          226 N  226 (346)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.56  E-value=0.00057  Score=58.41  Aligned_cols=98  Identities=17%  Similarity=0.150  Sum_probs=63.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC---ChHHHHHHHc----CCCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE---GSAKLSEAIG----DDSE  137 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d---~~~~~~~~~~----~~~d  137 (252)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++++.+.... .... .+  .|..+   ..+.+.+...    +.+|
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~-~~--~~~~~~~~~~~~i~~~~~~~~g~g~D  242 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-CGAD-VT--LVVDPAKEEESSIIERIRSAIGDLPN  242 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCS-EE--EECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-hCCC-EE--EcCcccccHHHHHHHHhccccCCCCC
Confidence            5789999997 999999999888899999998888776553322 2222 22  34432   1345665553    2399


Q ss_pred             EEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       138 ~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +||+++|...             .....++.++..  +++|.++.
T Consensus       243 ~vid~~g~~~-------------~~~~~~~~l~~~--G~iv~~G~  272 (352)
T 1e3j_A          243 VTIDCSGNEK-------------CITIGINITRTG--GTLMLVGM  272 (352)
T ss_dssp             EEEECSCCHH-------------HHHHHHHHSCTT--CEEEECSC
T ss_pred             EEEECCCCHH-------------HHHHHHHHHhcC--CEEEEEec
Confidence            9999987310             123334444433  48888764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.54  E-value=0.00048  Score=57.86  Aligned_cols=105  Identities=17%  Similarity=0.215  Sum_probs=65.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---cccC---CCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSKD---NPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      ++|.|+|+ |.+|..++..|+..|+  +|+++++++++.+..   +...   .....+.. +  + .    +.+.+ .|+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~--~-~----~a~~~-aDv   70 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-G--G-H----SELAD-AQV   70 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-E--C-G----GGGTT-CSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-C--C-H----HHhCC-CCE
Confidence            47999998 9999999999999998  999999987654321   1101   11233322 1  2 2    34677 999


Q ss_pred             EEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          139 VVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       139 vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      ||.+++...  ..+..+.+..|+.....+.+.+.+.... .++.+|
T Consensus        71 VIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t  116 (304)
T 2v6b_A           71 VILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS  116 (304)
T ss_dssp             EEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred             EEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            999997543  2334456677888888888888776433 444433

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.53  E-value=0.00099  Score=56.50  Aligned_cols=107  Identities=20%  Similarity=0.046  Sum_probs=73.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc----ccc--CCCCeEEEE-eeCCCChHHHHHHHcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT----LSK--DNPSLQIVK-ADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~----~~~--~~~~~~~i~-~Dl~d~~~~~~~~~~~~  135 (252)
                      ..++|.|+|+ |.+|..++..|+..|.  +|++++++.++.+..    ...  ......+.. .|..        .+.+ 
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--------~~~d-   89 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--------VSAG-   89 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--------SCSS-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--------HhCC-
Confidence            3689999998 9999999999999886  899999987654321    100  111223322 2322        2667 


Q ss_pred             CcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      .|+||.++|...  ..+..+.+..|..-...+.+.+.+.+. ..++.+|
T Consensus        90 aDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt  138 (330)
T 3ldh_A           90 SKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP  138 (330)
T ss_dssp             CSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence            999999999754  345567778888888888888877653 3455555

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.50  E-value=0.00042  Score=57.26  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=29.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEe-ecCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAG-VRDL  100 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~-~r~~  100 (252)
                      |++++|.|.|++|.+|+.+++.+.+. +.+++.+ +|+.
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~   43 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTG   43 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTT
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecC
Confidence            56789999999999999999999876 6777764 5553

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.48  E-value=0.00057  Score=58.68  Aligned_cols=101  Identities=17%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCchhhhhccccCCCCeEEEEeeCCCCh---HHHHHHHcC-CCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS---AKLSEAIGD-DSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~---~~~~~~~~~-~~d~v  139 (252)
                      .+.+|+|+|+ |.+|...++.+...|.+ |+++++++++.+..... ...+..+..|-.+..   +.+.+...+ .+|+|
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvv  256 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVA  256 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEE
Confidence            5789999998 99999999888888987 88888887766543221 223333333332311   233344332 49999


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      |.++|..             ......++.++..  ++++.++.
T Consensus       257 id~~g~~-------------~~~~~~~~~l~~~--G~iv~~G~  284 (363)
T 3m6i_A          257 LECTGVE-------------SSIAAAIWAVKFG--GKVFVIGV  284 (363)
T ss_dssp             EECSCCH-------------HHHHHHHHHSCTT--CEEEECCC
T ss_pred             EECCCCh-------------HHHHHHHHHhcCC--CEEEEEcc
Confidence            9998731             1123334444433  58888764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.48  E-value=0.00011  Score=62.34  Aligned_cols=105  Identities=11%  Similarity=0.082  Sum_probs=65.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhh---ccccC---CCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKT---TLSKD---NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~---~~~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      .++|.|+|+ |.+|..++-.|+..|.  +|++++.++++.+.   .+.+.   ...+++..   .+     .+++.+ .|
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~-----~~a~~~-aD   76 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA---GD-----YSDVKD-CD   76 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C-----GGGGTT-CS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE---CC-----HHHhCC-CC
Confidence            478999998 9999999999999886  89999988755432   11111   11233321   12     235778 99


Q ss_pred             EEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEE
Q 025456          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILI  180 (252)
Q Consensus       138 ~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~  180 (252)
                      +||.++|....  .+..+.+..|+.....+.+.+.+.... .++.+
T Consensus        77 vVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  122 (318)
T 1y6j_A           77 VIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV  122 (318)
T ss_dssp             EEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred             EEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence            99999987542  222344567777788888888775443 44443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.48  E-value=0.00034  Score=55.70  Aligned_cols=65  Identities=22%  Similarity=0.376  Sum_probs=48.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +++|.|+| +|.+|..+++.|++.|++|++.+|++++.+....   .++...     +    ..+.+.+ +|+||.+..
T Consensus        28 ~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~---~g~~~~-----~----~~~~~~~-~DvVi~av~   92 (215)
T 2vns_A           28 APKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTARLFP---SAAQVT-----F----QEEAVSS-PEVIFVAVF   92 (215)
T ss_dssp             -CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSB---TTSEEE-----E----HHHHTTS-CSEEEECSC
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---cCCcee-----c----HHHHHhC-CCEEEECCC
Confidence            57899999 7999999999999999999999999876655432   134331     2    3345667 999998875

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.47  E-value=0.00048  Score=57.52  Aligned_cols=106  Identities=15%  Similarity=0.109  Sum_probs=72.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhh---cccc----CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKT---TLSK----DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~---~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      |||.|+|+ |+||+.++-.|+.++  .++.+++.+++..+-   .+.+    ......+...+  | .    +.+.+ .|
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d-~----~~~~~-aD   71 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--D-Y----SLLKG-SE   71 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--C-G----GGGTT-CS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--C-H----HHhCC-CC
Confidence            58999995 999999999998876  379999988754321   1110    11223333321  2 1    24677 99


Q ss_pred             EEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      +||..||...  ..+..+.++.|..-...+.+.+.+...+ .++.+|
T Consensus        72 vVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs  118 (294)
T 2x0j_A           72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             EEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             EEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            9999999754  3455667889999999999999887654 444444

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.47  E-value=0.00025  Score=62.99  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      .+.+|+|+||+|.+|...++.+...|.+|+++++++++.+.
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~  268 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEI  268 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHH
Confidence            57899999999999999999888899999999988776553

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.47  E-value=0.00058  Score=58.30  Aligned_cols=93  Identities=20%  Similarity=0.212  Sum_probs=55.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +++|+|.||+|.+|+.+++.|+++++   +++.+.......+. +. . .+.++...|+ + .+    .+.+ +|+||.|
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~-~~-~-~g~~i~~~~~-~-~~----~~~~-~DvV~~a   75 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR-MG-F-AESSLRVGDV-D-SF----DFSS-VGLAFFA   75 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE-EE-E-TTEEEECEEG-G-GC----CGGG-CSEEEEC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCc-cc-c-CCcceEEecC-C-HH----HhcC-CCEEEEc
Confidence            36899999999999999999997654   45555422111110 10 0 1111111122 1 11    2467 9999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .|..              .+..+++.+.+.|+ ++|-+|+.
T Consensus        76 ~g~~--------------~s~~~a~~~~~aG~-kvId~Sa~  101 (340)
T 2hjs_A           76 AAAE--------------VSRAHAERARAAGC-SVIDLSGA  101 (340)
T ss_dssp             SCHH--------------HHHHHHHHHHHTTC-EEEETTCT
T ss_pred             CCcH--------------HHHHHHHHHHHCCC-EEEEeCCC
Confidence            8731              24566777778887 57777765

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.46  E-value=4.6e-05  Score=63.15  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=28.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHH-CCCeEEEeec
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVR   98 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r   98 (252)
                      ++++|+|+|++|.+|+.+++.+++ .|++++++.+
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d   38 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALE   38 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEEC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            457999999999999999999885 4788775443

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.43  E-value=0.00068  Score=57.31  Aligned_cols=107  Identities=15%  Similarity=0.138  Sum_probs=69.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhc---c----ccCCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTT---L----SKDNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~---~----~~~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      +.++|.|+|| |.+|..++..|+.+|  .+|+++++++++.+..   +    +.....+++.. |  +     .+++.+ 
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~-----~~a~~~-   74 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E-----YSDCHD-   74 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C-----GGGGTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C-----HHHhCC-
Confidence            4579999998 999999999999887  4899998887544321   1    10112333332 2  2     235778 


Q ss_pred             CcEEEEcCCCCCCC--CCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          136 SEAVVCATGFQPGW--DLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~~~--~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .|+||.++|.....  +....+..|..-...+.+.+++.... .++.+|
T Consensus        75 aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (317)
T 3d0o_A           75 ADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT  123 (317)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            99999999875422  22233466777777788888776543 444433

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.42  E-value=0.00074  Score=58.26  Aligned_cols=75  Identities=16%  Similarity=0.131  Sum_probs=50.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHH--cCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI--GDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~--~~~~d~vi~~  142 (252)
                      .+.+|+|+||+|.+|..+++.+...|++|++++ ++++.+.. ....  .+. ..|..+ .+..++..  .+ +|+||++
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~-~~lG--a~~-v~~~~~-~~~~~~~~~~~g-~D~vid~  255 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV-RKLG--ADD-VIDYKS-GSVEEQLKSLKP-FDFILDN  255 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-HHTT--CSE-EEETTS-SCHHHHHHTSCC-BSEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH-HHcC--CCE-EEECCc-hHHHHHHhhcCC-CCEEEEC
Confidence            578999999999999999998888999999887 44443322 2122  221 235554 32222222  35 9999999


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      +|..
T Consensus       256 ~g~~  259 (375)
T 2vn8_A          256 VGGS  259 (375)
T ss_dssp             SCTT
T ss_pred             CCCh
Confidence            9843

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.39  E-value=0.00032  Score=61.33  Aligned_cols=72  Identities=26%  Similarity=0.389  Sum_probs=53.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ..+++|+|+|+ |.+|+.+++.|...|. +|++.+|++++.++.....  +.+.  .   + .+++.+.+.+ +|+||.+
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~--g~~~--~---~-~~~l~~~l~~-aDvVi~a  234 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL--GGEA--V---R-FDELVDHLAR-SDVVVSA  234 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH--TCEE--C---C-GGGHHHHHHT-CSEEEEC
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc--CCce--e---c-HHhHHHHhcC-CCEEEEc
Confidence            56899999998 9999999999999998 8999999887653322111  1222  1   2 2345666777 9999999


Q ss_pred             CCC
Q 025456          143 TGF  145 (252)
Q Consensus       143 ag~  145 (252)
                      .+.
T Consensus       235 t~~  237 (404)
T 1gpj_A          235 TAA  237 (404)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            764

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.39  E-value=0.00099  Score=56.77  Aligned_cols=93  Identities=18%  Similarity=0.200  Sum_probs=57.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC---CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +++|.|.||+|.+|+.+++.|.+++   .+++.+....+..+. +.-....+.+  .|+ + ++    .+.+ +|+||.|
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~-~~~~~~~i~~--~~~-~-~~----~~~~-vDvVf~a   72 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKT-YRFNGKTVRV--QNV-E-EF----DWSQ-VHIALFS   72 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCE-EEETTEEEEE--EEG-G-GC----CGGG-CSEEEEC
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCc-eeecCceeEE--ecC-C-hH----HhcC-CCEEEEC
Confidence            6899999999999999999999873   466666532211111 1101112222  232 1 11    2356 9999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .|..              .+....+.+.+.|+ ++|-.|+.
T Consensus        73 ~g~~--------------~s~~~a~~~~~~G~-~vId~s~~   98 (336)
T 2r00_A           73 AGGE--------------LSAKWAPIAAEAGV-VVIDNTSH   98 (336)
T ss_dssp             SCHH--------------HHHHHHHHHHHTTC-EEEECSST
T ss_pred             CCch--------------HHHHHHHHHHHcCC-EEEEcCCc
Confidence            8731              24566677778887 77777775

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.38  E-value=0.00056  Score=58.66  Aligned_cols=75  Identities=19%  Similarity=0.077  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|+|+ |.+|...++.+...|.+|+++++++++.+.........  . ..|..+ .+.+.+...+ +|+||.++|
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~--~-vi~~~~-~~~~~~~~~g-~D~vid~~g  253 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGAD--D-YVIGSD-QAKMSELADS-LDYVIDTVP  253 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCS--C-EEETTC-HHHHHHSTTT-EEEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCc--e-eecccc-HHHHHHhcCC-CCEEEECCC
Confidence            5789999995 99999999888888999999999877655433112111  1 235555 5666666566 999999998


Q ss_pred             C
Q 025456          145 F  145 (252)
Q Consensus       145 ~  145 (252)
                      .
T Consensus       254 ~  254 (357)
T 2cf5_A          254 V  254 (357)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.38  E-value=0.00019  Score=60.82  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=47.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC-hHHHHHHHcCCCcEEEEcCCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +|+|+||+|.+|...++.+...|++|+++++++++.+.... .... .+  .|..+. .+.+.+...+.+|+||+++|.
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-lGa~-~~--i~~~~~~~~~~~~~~~~~~d~vid~~g~  226 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-LGAK-EV--LAREDVMAERIRPLDKQRWAAAVDPVGG  226 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-TTCS-EE--EECC---------CCSCCEEEEEECSTT
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-cCCc-EE--EecCCcHHHHHHHhcCCcccEEEECCcH
Confidence            89999999999999999888899999999998766543322 2111 11  344441 111222222249999999884

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.37  E-value=0.00066  Score=56.35  Aligned_cols=69  Identities=14%  Similarity=0.291  Sum_probs=51.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ..++++++|+|+ |+.|++++..|.+.|. +|+++.|+.++.+++..    .+..+  ++    +++.+ + + .|+|||
T Consensus       119 ~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~----~~~~~--~~----~~l~~-l-~-~DivIn  184 (282)
T 3fbt_A          119 EIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG----EFKVI--SY----DELSN-L-K-GDVIIN  184 (282)
T ss_dssp             CCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT----TSEEE--EH----HHHTT-C-C-CSEEEE
T ss_pred             CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hcCcc--cH----HHHHh-c-c-CCEEEE
Confidence            456899999997 8999999999999998 89999999988766543    23222  22    23334 4 6 999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      +...
T Consensus       185 aTp~  188 (282)
T 3fbt_A          185 CTPK  188 (282)
T ss_dssp             CSST
T ss_pred             CCcc
Confidence            8743

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.36  E-value=0.0013  Score=55.91  Aligned_cols=96  Identities=17%  Similarity=0.172  Sum_probs=59.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCc---hhhh---hcccc-CC-CCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDL---DKAK---TTLSK-DN-PSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~---~~~~---~~~~~-~~-~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      |++|.|.||||.+|+.+++.|.++ .+++..+..+.   ...+   +..+. .. .++.+...  .+ .+   +...+ +
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~--~~-~~---~~~~~-~   76 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM--SD-IS---EFSPG-V   76 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE--SS-GG---GTCTT-C
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEecc--CC-HH---HHhcC-C
Confidence            689999999999999999999985 45777765443   2211   11111 11 12333222  02 11   22256 9


Q ss_pred             cEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          137 EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       137 d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |+||.|.+.              ..+..+.+.+.+.|+ ++|-.|+.
T Consensus        77 Dvvf~a~p~--------------~~s~~~~~~~~~~g~-~vIDlSa~  108 (337)
T 3dr3_A           77 DVVFLATAH--------------EVSHDLAPQFLEAGC-VVFDLSGA  108 (337)
T ss_dssp             SEEEECSCH--------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred             CEEEECCCh--------------HHHHHHHHHHHHCCC-EEEEcCCc
Confidence            999988762              124566666677887 77777875

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.36  E-value=0.00024  Score=60.66  Aligned_cols=99  Identities=13%  Similarity=0.081  Sum_probs=64.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi  140 (252)
                      .+.+|+|+|+ |.+|..+++.+...|+ +|+++++++++.+.... .  +++. ..|..++  .+.+.+...+ .+|+||
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-~--Ga~~-~~~~~~~~~~~~v~~~~~g~g~D~vi  241 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK-V--GADY-VINPFEEDVVKEVMDITDGNGVDVFL  241 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH-H--TCSE-EECTTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h--CCCE-EECCCCcCHHHHHHHHcCCCCCCEEE
Confidence            5789999999 9999999999888999 99999998776543221 1  1111 1354441  1334444332 399999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +++|..             ......++.++..  ++++.+++.
T Consensus       242 d~~g~~-------------~~~~~~~~~l~~~--G~iv~~g~~  269 (348)
T 2d8a_A          242 EFSGAP-------------KALEQGLQAVTPA--GRVSLLGLY  269 (348)
T ss_dssp             ECSCCH-------------HHHHHHHHHEEEE--EEEEECCCC
T ss_pred             ECCCCH-------------HHHHHHHHHHhcC--CEEEEEccC
Confidence            999831             1223444444443  488888764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.34  E-value=0.0018  Score=54.69  Aligned_cols=107  Identities=18%  Similarity=0.173  Sum_probs=68.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc----ccc---CCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT----LSK---DNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~----~~~---~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      +.++|.|+|+ |.+|..++..|+..|.  +|++++++++..+..    ...   ....+.+.. |  + .    +++.+ 
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~-~----~al~~-   74 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--D-Y----DDCRD-   74 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--C-G----GGTTT-
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--c-H----HHhCC-
Confidence            3579999998 9999999999988774  899999987644321    110   111344432 2  2 1    34777 


Q ss_pred             CcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .|+||.++++...  .+..+.+..|..-...+.+.+++.... .++.+|
T Consensus        75 aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t  123 (316)
T 1ldn_A           75 ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (316)
T ss_dssp             CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence            9999999987542  233344556666677777777766533 344443

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.34  E-value=0.002  Score=55.48  Aligned_cols=93  Identities=19%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +++|.|.||||++|..|++.|.++++   ++..+.-.....+. +.-.  +.+...-++..  +    .+.+ +|+||.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~-~~~~--~~~~~~~~~~~--~----~~~~-~Dvvf~a   71 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS-LKFK--DQDITIEETTE--T----AFEG-VDIALFS   71 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCE-EEET--TEEEEEEECCT--T----TTTT-CSEEEEC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCc-ceec--CCCceEeeCCH--H----HhcC-CCEEEEC
Confidence            47999999999999999999888765   34444322211111 1101  11221122221  1    2456 9999998


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +|.              ..+......+.+.|+ ++|-.|+.
T Consensus        72 ~~~--------------~~s~~~a~~~~~~G~-~vIDlSa~   97 (366)
T 3pwk_A           72 AGS--------------STSAKYAPYAVKAGV-VVVDNTSY   97 (366)
T ss_dssp             SCH--------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred             CCh--------------HhHHHHHHHHHHCCC-EEEEcCCc
Confidence            862              124455566667776 67777764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.34  E-value=0.00083  Score=56.46  Aligned_cols=104  Identities=21%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhcccc-------CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~-------~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      ++|.|+| +|.+|..++..|++.|  ++|++++|++++.+.....       ....+.+..   +|    . +.+.+ .|
T Consensus         2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~d----~-~~~~~-aD   71 (309)
T 1hyh_A            2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI---ND----W-AALAD-AD   71 (309)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE---SC----G-GGGTT-CS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe---CC----H-HHhCC-CC
Confidence            6899999 6999999999999999  7999999987665432110       011233322   23    2 34667 99


Q ss_pred             EEEEcCCCCC------CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEE
Q 025456          138 AVVCATGFQP------GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILI  180 (252)
Q Consensus       138 ~vi~~ag~~~------~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~  180 (252)
                      +||.+++...      ..+..+.+..|+.....+++.+++.... .+|.+
T Consensus        72 vViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~  121 (309)
T 1hyh_A           72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI  121 (309)
T ss_dssp             EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             EEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            9999987532      2233344566777777788887765433 34443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.33  E-value=0.00045  Score=59.61  Aligned_cols=74  Identities=15%  Similarity=0.104  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++++.+.... .  +.+. ..|..+ .+.+.+...+ +|+||.++|
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-l--Ga~~-vi~~~~-~~~~~~~~~g-~Dvvid~~g  266 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-L--GADE-VVNSRN-ADEMAAHLKS-FDFILNTVA  266 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H--TCSE-EEETTC-HHHHHTTTTC-EEEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c--CCcE-Eecccc-HHHHHHhhcC-CCEEEECCC
Confidence            4789999998 899999999888899999999988776553322 1  1111 245555 4444444456 999999998


Q ss_pred             C
Q 025456          145 F  145 (252)
Q Consensus       145 ~  145 (252)
                      .
T Consensus       267 ~  267 (369)
T 1uuf_A          267 A  267 (369)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.33  E-value=0.0019  Score=57.37  Aligned_cols=100  Identities=16%  Similarity=0.315  Sum_probs=72.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~a  143 (252)
                      .-++|+|.|| |-+|..+++.| +++++|.++.++.++.+.+.. ..++..++.+|.+| .+-+.+. +.. .|++|-+.
T Consensus       234 ~~~~v~I~Gg-G~ig~~lA~~L-~~~~~v~iIE~d~~r~~~la~-~l~~~~Vi~GD~td-~~~L~ee~i~~-~D~~ia~T  308 (461)
T 4g65_A          234 PYRRIMIVGG-GNIGASLAKRL-EQTYSVKLIERNLQRAEKLSE-ELENTIVFCGDAAD-QELLTEENIDQ-VDVFIALT  308 (461)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-TTTSEEEEEESCHHHHHHHHH-HCTTSEEEESCTTC-HHHHHHTTGGG-CSEEEECC
T ss_pred             cccEEEEEcc-hHHHHHHHHHh-hhcCceEEEecCHHHHHHHHH-HCCCceEEeccccc-hhhHhhcCchh-hcEEEEcc
Confidence            3579999997 89999999987 456899999999877665433 33578999999999 6666654 455 99998665


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +-         -+.|+.    +.-.|++.|+++.|-.=.
T Consensus       309 ~~---------De~Ni~----~~llAk~~gv~kvIa~vn  334 (461)
T 4g65_A          309 NE---------DETNIM----SAMLAKRMGAKKVMVLIQ  334 (461)
T ss_dssp             SC---------HHHHHH----HHHHHHHTTCSEEEEECS
T ss_pred             cC---------cHHHHH----HHHHHHHcCCcccccccc
Confidence            41         134554    334468889988776543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.33  E-value=0.00049  Score=56.26  Aligned_cols=68  Identities=24%  Similarity=0.384  Sum_probs=52.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .++ +++|.|+ |+.|++++..|++.|. +|++..|++++.+++..    .+..  .+    .+++.+.+.+ .|+||++
T Consensus       107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~----~~~~--~~----~~~~~~~~~~-aDiVIna  173 (253)
T 3u62_A          107 VKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDF----PVKI--FS----LDQLDEVVKK-AKSLFNT  173 (253)
T ss_dssp             CCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS----SCEE--EE----GGGHHHHHHT-CSEEEEC
T ss_pred             CCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----Hccc--CC----HHHHHhhhcC-CCEEEEC
Confidence            457 9999997 9999999999999998 89999999887766442    2222  12    2345566777 9999998


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      ..
T Consensus       174 tp  175 (253)
T 3u62_A          174 TS  175 (253)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.32  E-value=0.0014  Score=55.41  Aligned_cols=106  Identities=17%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---ccc---CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSK---DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~---~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      .++|.|+|| |.+|..++-.|+..+.  +|+++++++++.+..   +.+   ....+++.. |  +     .+++.+ .|
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~-----~~a~~~-aD   74 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E-----YSDCKD-AD   74 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C-----GGGGTT-CS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C-----HHHhCC-CC
Confidence            479999998 9999999999998875  899999987655421   110   112344432 2  1     234778 99


Q ss_pred             EEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      +||.++|...  ..+..+.+..|......+.+.+++.+. ..++.+|
T Consensus        75 vVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  121 (318)
T 1ez4_A           75 LVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (318)
T ss_dssp             EEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            9999998754  233445667888888888888887754 3555554

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.31  E-value=0.0011  Score=56.22  Aligned_cols=107  Identities=14%  Similarity=0.173  Sum_probs=67.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc---ccc----CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT---LSK----DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~---~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      +++|.|+|| |.+|..++..|+..|+ +|+++++++++.+..   +..    ......+...  +|    . +++.+ .|
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d----~-~al~~-aD   74 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS--NT----Y-DDLAG-AD   74 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE--CC----G-GGGTT-CS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC--CC----H-HHhCC-CC
Confidence            478999998 9999999999999998 899999887655421   110    0111122110  12    2 45778 99


Q ss_pred             EEEEcCCCCCCCC-------CCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          138 AVVCATGFQPGWD-------LFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~~~~-------~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      +||.++|.....+       ..+....|..-...+.+.+.+.... .+|.+|
T Consensus        75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  126 (322)
T 1t2d_A           75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  126 (322)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999998653221       2233445666667777777665433 444443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.30  E-value=0.00053  Score=60.98  Aligned_cols=40  Identities=30%  Similarity=0.204  Sum_probs=35.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA  103 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~  103 (252)
                      .+.+++++|||+ |+||+.+++.|.+.|.+|++.++++...
T Consensus       262 ~L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~~~~~a  301 (488)
T 3ond_A          262 MIAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEIDPICA  301 (488)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence            467999999998 5999999999999999999999987654

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.29  E-value=0.00017  Score=62.10  Aligned_cols=96  Identities=17%  Similarity=0.234  Sum_probs=59.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ++++|.|.||+|.+|+.+++.|.+++. +++.+.+..+...+   ..+.....+   ..|+.- .+  .+.+.+ +|+||
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v---~~dl~~-~~--~~~~~~-vDvVf   87 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQK---LPTLVS-VK--DADFST-VDAVF   87 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSC---CCCCBC-GG--GCCGGG-CSEEE
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcc---ccccee-cc--hhHhcC-CCEEE
Confidence            457999999999999999999998764 77777654322211   111001111   134332 22  334556 99999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      .|+|...              +......+ +.|+ ++|-.|+.
T Consensus        88 ~atp~~~--------------s~~~a~~~-~aG~-~VId~sa~  114 (359)
T 1xyg_A           88 CCLPHGT--------------TQEIIKEL-PTAL-KIVDLSAD  114 (359)
T ss_dssp             ECCCTTT--------------HHHHHHTS-CTTC-EEEECSST
T ss_pred             EcCCchh--------------HHHHHHHH-hCCC-EEEECCcc
Confidence            9987432              34455566 6776 67777774

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=97.29  E-value=0.00079  Score=58.05  Aligned_cols=100  Identities=11%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~  141 (252)
                      ..+.+|+|.||+|.+|...++.+...|++|+++. ++++.+.... .+  .+. ..|..+.  .+.+.+...+++|+||.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~-lG--a~~-vi~~~~~~~~~~v~~~t~g~~d~v~d  237 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS-RG--AEE-VFDYRAPNLAQTIRTYTKNNLRYALD  237 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH-TT--CSE-EEETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH-cC--CcE-EEECCCchHHHHHHHHccCCccEEEE
Confidence            3589999999999999999998888999998876 5554432221 22  211 2354441  23445544445999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      ++|..             ......++.+.+.+ ++++.++.
T Consensus       238 ~~g~~-------------~~~~~~~~~l~~~~-G~iv~~g~  264 (371)
T 3gqv_A          238 CITNV-------------ESTTFCFAAIGRAG-GHYVSLNP  264 (371)
T ss_dssp             SSCSH-------------HHHHHHHHHSCTTC-EEEEESSC
T ss_pred             CCCch-------------HHHHHHHHHhhcCC-CEEEEEec
Confidence            99831             11223344442223 58888874

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.27  E-value=0.0012  Score=55.14  Aligned_cols=72  Identities=21%  Similarity=0.286  Sum_probs=53.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+++++|.|+ |.+|+.+++.|...|.+|++.+|++++.+....   .+++.+  +    .+++.+.+.+ .|+||.+
T Consensus       154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~---~g~~~~--~----~~~l~~~l~~-aDvVi~~  222 (300)
T 2rir_A          154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARITE---MGLVPF--H----TDELKEHVKD-IDICINT  222 (300)
T ss_dssp             CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TTCEEE--E----GGGHHHHSTT-CSEEEEC
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---CCCeEE--c----hhhHHHHhhC-CCEEEEC
Confidence            567899999996 999999999999999999999998865443221   123322  1    2346667777 9999998


Q ss_pred             CCC
Q 025456          143 TGF  145 (252)
Q Consensus       143 ag~  145 (252)
                      ...
T Consensus       223 ~p~  225 (300)
T 2rir_A          223 IPS  225 (300)
T ss_dssp             CSS
T ss_pred             CCh
Confidence            764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.27  E-value=0.00054  Score=56.86  Aligned_cols=41  Identities=20%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~  106 (252)
                      +++|.|.|++|.+|..+++.|++.|++|++.+|+++..+..
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~   51 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRL   51 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            47999999999999999999999999999999988766543

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.27  E-value=0.0013  Score=56.33  Aligned_cols=102  Identities=17%  Similarity=0.259  Sum_probs=65.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCC--CeEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNP--SLQIV  117 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~--~~~~i  117 (252)
                      .+++.+|+|.|+ |++|.++++.|+..|. ++++++++.-....                      .+....+  +++.+
T Consensus       115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~  193 (353)
T 3h5n_A          115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEI  193 (353)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEe
Confidence            456789999997 9999999999999995 78888876311111                      0111122  35556


Q ss_pred             EeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       118 ~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      ..++.+ ...+.+ +.+ +|+||.+...     ...       .-..+-++|++.++ .+|+.+
T Consensus       194 ~~~i~~-~~~~~~-~~~-~DlVvd~~Dn-----~~~-------~r~~ln~~c~~~~~-p~i~~~  241 (353)
T 3h5n_A          194 ALNIND-YTDLHK-VPE-ADIWVVSADH-----PFN-------LINWVNKYCVRANQ-PYINAG  241 (353)
T ss_dssp             ECCCCS-GGGGGG-SCC-CSEEEECCCC-----STT-------HHHHHHHHHHHTTC-CEEEEE
T ss_pred             ecccCc-hhhhhH-hcc-CCEEEEecCC-----hHH-------HHHHHHHHHHHhCC-CEEEEE
Confidence            666665 444555 777 9999987531     110       12345577888886 466554

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.26  E-value=0.0004  Score=59.60  Aligned_cols=74  Identities=15%  Similarity=0.030  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCCh-HHHHHHHcCCCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS-AKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~-~~~~~~~~~~~d~vi~~a  143 (252)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++++.+.... ..  .+. ..|..+ . +..++...+ +|+||.++
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-lG--a~~-v~~~~~-~~~~~~~~~~~-~D~vid~~  251 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MG--ADH-YIATLE-EGDWGEKYFDT-FDLIVVCA  251 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HT--CSE-EEEGGG-TSCHHHHSCSC-EEEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cC--CCE-EEcCcC-chHHHHHhhcC-CCEEEECC
Confidence            5789999999 999999998888889999999988776543222 11  111 135544 3 323333346 99999999


Q ss_pred             CC
Q 025456          144 GF  145 (252)
Q Consensus       144 g~  145 (252)
                      |.
T Consensus       252 g~  253 (360)
T 1piw_A          252 SS  253 (360)
T ss_dssp             SC
T ss_pred             CC
Confidence            85

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.25  E-value=0.00036  Score=58.35  Aligned_cols=39  Identities=28%  Similarity=0.220  Sum_probs=34.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      +++|.|.|+ |.+|..++..|++.|++|++++|+++..+.
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~   41 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWPAHIEA   41 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence            478999996 999999999999999999999998876554

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.25  E-value=0.00062  Score=56.09  Aligned_cols=66  Identities=17%  Similarity=0.136  Sum_probs=49.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      +++++|+|+ |+.|++++..|++.|.+|++..|+.++.+++. ..  ++..+  ++.+    +    .+ .|+|||+...
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~--~~~~~--~~~~----l----~~-~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL--GCDCF--MEPP----K----SA-FDLIINATSA  182 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH--TCEEE--SSCC----S----SC-CSEEEECCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC--CCeEe--cHHH----h----cc-CCEEEEcccC
Confidence            789999997 99999999999999999999999988776543 11  12222  2322    1    25 8999998754


Q ss_pred             C
Q 025456          146 Q  146 (252)
Q Consensus       146 ~  146 (252)
                      .
T Consensus       183 G  183 (269)
T 3phh_A          183 S  183 (269)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.24  E-value=0.00076  Score=57.96  Aligned_cols=97  Identities=14%  Similarity=0.137  Sum_probs=63.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC---ChHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE---GSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d---~~~~~~~~~~~-~~d~vi  140 (252)
                      .+.+|+|+| +|.+|...++.+...|++|+++++++++.+.... .... .+  .| .+   ..+.+.+...+ .+|+||
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~-~v--i~-~~~~~~~~~v~~~~~g~g~D~vi  262 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA-LGAD-HG--IN-RLEEDWVERVYALTGDRGADHIL  262 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTCS-EE--EE-TTTSCHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH-cCCC-EE--Ec-CCcccHHHHHHHHhCCCCceEEE
Confidence            478999999 8999999999888899999999998776654322 1111 12  24 22   12445555543 499999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +++|..       .       ....++.++..  ++++.++..
T Consensus       263 d~~g~~-------~-------~~~~~~~l~~~--G~iv~~G~~  289 (363)
T 3uog_A          263 EIAGGA-------G-------LGQSLKAVAPD--GRISVIGVL  289 (363)
T ss_dssp             EETTSS-------C-------HHHHHHHEEEE--EEEEEECCC
T ss_pred             ECCChH-------H-------HHHHHHHhhcC--CEEEEEecC
Confidence            999821       1       22344444443  488888754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.23  E-value=0.0012  Score=54.99  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=53.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+++++|.|+ |.+|+.+++.|...|.+|++.+|++++.+....   .+++.+  +    .+++.+.+.+ .|+|+.+
T Consensus       152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~---~g~~~~--~----~~~l~~~l~~-aDvVi~~  220 (293)
T 3d4o_A          152 TIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLARIAE---MGMEPF--H----ISKAAQELRD-VDVCINT  220 (293)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TTSEEE--E----GGGHHHHTTT-CSEEEEC
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH---CCCeec--C----hhhHHHHhcC-CCEEEEC
Confidence            567899999995 999999999999999999999998765433221   123332  2    2346667777 9999998


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      ..
T Consensus       221 ~p  222 (293)
T 3d4o_A          221 IP  222 (293)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=97.22  E-value=0.00082  Score=57.64  Aligned_cols=75  Identities=16%  Similarity=0.060  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCCh--HHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS--AKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~--~~~~~~~~~-~~d~vi  140 (252)
                      .+.+|+|+|| |.+|...++.+... |++|+++++++++.+.... ..  .+. ..|..+ .  +.+.+...+ .+|+||
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~-lG--a~~-vi~~~~-~~~~~v~~~~~g~g~Dvvi  259 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-LG--ADH-VVDARR-DPVKQVMELTRGRGVNVAM  259 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-TT--CSE-EEETTS-CHHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hC--CCE-EEeccc-hHHHHHHHHhCCCCCcEEE
Confidence            5789999999 99999999888888 9999999998776554322 22  211 135554 3  444444433 499999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      .++|.
T Consensus       260 d~~G~  264 (359)
T 1h2b_A          260 DFVGS  264 (359)
T ss_dssp             ESSCC
T ss_pred             ECCCC
Confidence            99884

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.22  E-value=0.00043  Score=61.13  Aligned_cols=40  Identities=23%  Similarity=0.134  Sum_probs=34.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~  107 (252)
                      |+|.|.| .|.+|..++..|++.|++|++++|++++.+.+.
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~   40 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHh
Confidence            4789998 599999999999999999999999988766543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.22  E-value=0.0036  Score=55.44  Aligned_cols=98  Identities=18%  Similarity=0.211  Sum_probs=60.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCC----CCeE-EE-----EeeCCCChHHHHHHHcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN----PSLQ-IV-----KADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~-~i-----~~Dl~d~~~~~~~~~~~~~  136 (252)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|++++.+.+..+..    +++. .+     ...+.- ..+..+++.+ .
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~~~-a   79 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAVPE-A   79 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHGGG-C
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHHhc-C
Confidence            68999986 999999999999999999999999887665432110    0100 00     000100 1224456677 9


Q ss_pred             cEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHh
Q 025456          137 EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK  171 (252)
Q Consensus       137 d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~  171 (252)
                      |+||.+.+.....+    -..|+.....+++.+.+
T Consensus        80 DvViiaVptp~~~~----~~~dl~~v~~v~~~i~~  110 (450)
T 3gg2_A           80 DIIFIAVGTPAGED----GSADMSYVLDAARSIGR  110 (450)
T ss_dssp             SEEEECCCCCBCTT----SSBCCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCcccC----CCcChHHHHHHHHHHHh
Confidence            99999987543221    13344455555555543

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.20  E-value=0.00089  Score=59.02  Aligned_cols=114  Identities=17%  Similarity=0.132  Sum_probs=67.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC------------hHHHHHHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG------------SAKLSEAI  132 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~------------~~~~~~~~  132 (252)
                      ++.+|.|.| .|++|.-++..|++.|++|++++.++++.+.+..+..   .+.+-++.+.            ..+..+++
T Consensus        20 ~m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~---pi~Epgl~ell~~~~~~g~l~~tt~~~~ai   95 (444)
T 3vtf_A           20 HMASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRP---HIYEPGLEEALGRALSSGRLSFAESAEEAV   95 (444)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCC---SSCCTTHHHHHHHHHHTTCEEECSSHHHHH
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCC---CCCCCCHHHHHHHHHHcCCeeEEcCHHHHH
Confidence            578999998 5999999999999999999999999888766543211   1111000000            11234455


Q ss_pred             cCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEccc
Q 025456          133 GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSI  183 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~SS~  183 (252)
                      .. .|++|-|.++....+....+.--..+...+.+.++..+.+ -+|+=||+
T Consensus        96 ~~-ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTV  146 (444)
T 3vtf_A           96 AA-TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTV  146 (444)
T ss_dssp             HT-SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCC
T ss_pred             hc-CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            66 8999999886543332211111122344455555543323 44555654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.19  E-value=0.00046  Score=58.25  Aligned_cols=73  Identities=15%  Similarity=0.135  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|+||+|.+|...++.+...|.+|+++++.. +.+. .....  ++. ..|..+ .+.+.+.+.+ +|+||.++|
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~~~~-~~~lG--a~~-~i~~~~-~~~~~~~~~g-~D~v~d~~g  224 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-NHAF-LKALG--AEQ-CINYHE-EDFLLAISTP-VDAVIDLVG  224 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-HHHH-HHHHT--CSE-EEETTT-SCHHHHCCSC-EEEEEESSC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-hHHH-HHHcC--CCE-EEeCCC-cchhhhhccC-CCEEEECCC
Confidence            578999999999999999999888999999887543 3322 21111  211 245555 3435666677 999999987

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.19  E-value=0.00069  Score=56.01  Aligned_cols=72  Identities=29%  Similarity=0.354  Sum_probs=52.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ..++++++|.|+ |.+|++++..|++.|++|++.+|++++.+++....  ++.     +.+   ++.+.+.+ +|+||++
T Consensus       126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~--g~~-----~~~---~~~~~~~~-aDiVi~a  193 (275)
T 2hk9_A          126 EVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF--PLE-----VVN---SPEEVIDK-VQVIVNT  193 (275)
T ss_dssp             TGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS--CEE-----ECS---CGGGTGGG-CSEEEEC
T ss_pred             CcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc--CCe-----eeh---hHHhhhcC-CCEEEEe
Confidence            346789999996 89999999999999999999999987765543211  222     221   12334566 9999999


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      ....
T Consensus       194 tp~~  197 (275)
T 2hk9_A          194 TSVG  197 (275)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            8654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.17  E-value=0.00097  Score=56.75  Aligned_cols=97  Identities=12%  Similarity=0.068  Sum_probs=62.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~  141 (252)
                      .+.+|+|+|| |.+|..+++.+...|+ +|+++++++++.+.... .   .+. ..|..++  .+.+.+...+.+|+||+
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l---a~~-v~~~~~~~~~~~~~~~~~~g~D~vid  237 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y---ADR-LVNPLEEDLLEVVRRVTGSGVEVLLE  237 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T---CSE-EECTTTSCHHHHHHHHHSSCEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h---HHh-ccCcCccCHHHHHHHhcCCCCCEEEE
Confidence            5789999999 9999999998888999 99999998776553322 1   111 2354431  12333333224999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      ++|..             ......++.++..  ++++.++.
T Consensus       238 ~~g~~-------------~~~~~~~~~l~~~--G~iv~~g~  263 (343)
T 2dq4_A          238 FSGNE-------------AAIHQGLMALIPG--GEARILGI  263 (343)
T ss_dssp             CSCCH-------------HHHHHHHHHEEEE--EEEEECCC
T ss_pred             CCCCH-------------HHHHHHHHHHhcC--CEEEEEec
Confidence            99831             1233444544443  47888765

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.16  E-value=0.0014  Score=56.13  Aligned_cols=95  Identities=19%  Similarity=0.142  Sum_probs=61.3

Q ss_pred             cEEEEEcCCChHHHHH-HHHH-HHCCCe-EEEeecCch---hhhhccccCCCCeEEEEeeCCCC-hHHHHHHHcCCCcEE
Q 025456           67 KKIFVAGATGSSGKRI-VEQL-LAKGFA-VKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAV  139 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l-~~~L-~~~G~~-V~~~~r~~~---~~~~~~~~~~~~~~~i~~Dl~d~-~~~~~~~~~~~~d~v  139 (252)
                      .+|+|+|| |.+|... ++.+ ...|.+ |++++++++   +.+....   -+++.+  |..+. ..++.+. .+.+|+|
T Consensus       174 ~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~---lGa~~v--~~~~~~~~~i~~~-~gg~Dvv  246 (357)
T 2b5w_A          174 SSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE---LDATYV--DSRQTPVEDVPDV-YEQMDFI  246 (357)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH---TTCEEE--ETTTSCGGGHHHH-SCCEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH---cCCccc--CCCccCHHHHHHh-CCCCCEE
Confidence            89999999 9999999 8777 667987 999999876   5543322   234555  65541 1124444 3349999


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |.++|..             ......++.++..  ++++.++..
T Consensus       247 id~~g~~-------------~~~~~~~~~l~~~--G~iv~~g~~  275 (357)
T 2b5w_A          247 YEATGFP-------------KHAIQSVQALAPN--GVGALLGVP  275 (357)
T ss_dssp             EECSCCH-------------HHHHHHHHHEEEE--EEEEECCCC
T ss_pred             EECCCCh-------------HHHHHHHHHHhcC--CEEEEEeCC
Confidence            9998731             0123344444443  478887754

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.15  E-value=0.0023  Score=54.74  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=50.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCC--CCh---HHHHHHH-cCCCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVT--EGS---AKLSEAI-GDDSE  137 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~--d~~---~~~~~~~-~~~~d  137 (252)
                      .+.+|+|+|+ |.+|...++.+...|. +|+++++++++.+.... .... .+  .|..  +..   +.+.+.. .+ +|
T Consensus       171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~-~v--i~~~~~~~~~~~~~i~~~~~~g-~D  244 (356)
T 1pl8_A          171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-IGAD-LV--LQISKESPQEIARKVEGQLGCK-PE  244 (356)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-TTCS-EE--EECSSCCHHHHHHHHHHHHTSC-CS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCCC-EE--EcCcccccchHHHHHHHHhCCC-CC
Confidence            5789999996 9999999988888898 89999988776543222 2222 22  3443  102   2333333 35 99


Q ss_pred             EEEEcCCC
Q 025456          138 AVVCATGF  145 (252)
Q Consensus       138 ~vi~~ag~  145 (252)
                      +||.++|.
T Consensus       245 ~vid~~g~  252 (356)
T 1pl8_A          245 VTIECTGA  252 (356)
T ss_dssp             EEEECSCC
T ss_pred             EEEECCCC
Confidence            99999873

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.15  E-value=0.0014  Score=55.54  Aligned_cols=107  Identities=18%  Similarity=0.208  Sum_probs=70.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---cccC---CCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSKD---NPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      +.++|.|+|| |.+|..++-.|+..+.  +|++++++.++.+..   +.+.   ..++.+.. |  +     .+++.+ .
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~-----~~a~~~-a   77 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--E-----YSDAKD-A   77 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--C-----GGGGGG-C
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--C-----HHHhCC-C
Confidence            3589999998 9999999999988775  899999987655321   1111   12334432 2  1     234778 9


Q ss_pred             cEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          137 EAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       137 d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      |+||..+|....  .+..+.+..|......+.+.+++... ..++.+|
T Consensus        78 DvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  125 (326)
T 2zqz_A           78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             SEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            999999987542  22234456677777888888877653 3555554

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.15  E-value=0.00059  Score=58.26  Aligned_cols=70  Identities=24%  Similarity=0.253  Sum_probs=50.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|+|+ |.+|...++.+...|.+|+++++++++.+.... .+... ++    .+ .+.+.+   + +|+||.++|
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~-v~----~~-~~~~~~---~-~D~vid~~g  243 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS-MGVKH-FY----TD-PKQCKE---E-LDFIISTIP  243 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH-TTCSE-EE----SS-GGGCCS---C-EEEEEECCC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh-cCCCe-ec----CC-HHHHhc---C-CCEEEECCC
Confidence            5899999997 999999999888899999999988876654332 22222 22    34 343333   6 999999988


Q ss_pred             CC
Q 025456          145 FQ  146 (252)
Q Consensus       145 ~~  146 (252)
                      ..
T Consensus       244 ~~  245 (348)
T 3two_A          244 TH  245 (348)
T ss_dssp             SC
T ss_pred             cH
Confidence            43

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.14  E-value=0.0012  Score=55.61  Aligned_cols=82  Identities=15%  Similarity=0.046  Sum_probs=56.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCe-EEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSL-QIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ++.+++++|.|++..+|+.+++.|++.|.+|+++.|+..+............ .......++ .+++.+.+.+ .|+||.
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~-~~~L~e~l~~-ADIVIs  251 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYS-EDLLKKCSLD-SDVVIT  251 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECC-HHHHHHHHHH-CSEEEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhccccccccccc-HhHHHHHhcc-CCEEEE
Confidence            5679999999998889999999999999999999887543322111111111 111111133 4678888888 999999


Q ss_pred             cCCCC
Q 025456          142 ATGFQ  146 (252)
Q Consensus       142 ~ag~~  146 (252)
                      +.|..
T Consensus       252 Atg~p  256 (320)
T 1edz_A          252 GVPSE  256 (320)
T ss_dssp             CCCCT
T ss_pred             CCCCC
Confidence            98854

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.13  E-value=0.0017  Score=55.22  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=30.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL  100 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~  100 (252)
                      +++.+|+|.|+ |++|.++++.|+..|. ++++++++.
T Consensus        32 L~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           32 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            45799999997 9999999999999996 688777653

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.12  E-value=0.0016  Score=56.69  Aligned_cols=76  Identities=20%  Similarity=0.379  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC---hHHHHHHHcC-CCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG---SAKLSEAIGD-DSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~---~~~~~~~~~~-~~d~v  139 (252)
                      .+.+|+|+|+ |.+|...++.+...|. +|+++++++++.+....   -++++  .|..+.   .+.+.+...+ .+|+|
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~---lGa~~--i~~~~~~~~~~~~~~~~~g~g~Dvv  258 (398)
T 2dph_A          185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD---AGFET--IDLRNSAPLRDQIDQILGKPEVDCG  258 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT---TTCEE--EETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH---cCCcE--EcCCCcchHHHHHHHHhCCCCCCEE
Confidence            5789999997 9999999988777898 89999998877654322   23443  455441   2344444443 49999


Q ss_pred             EEcCCCC
Q 025456          140 VCATGFQ  146 (252)
Q Consensus       140 i~~ag~~  146 (252)
                      |.++|..
T Consensus       259 id~~g~~  265 (398)
T 2dph_A          259 VDAVGFE  265 (398)
T ss_dssp             EECSCTT
T ss_pred             EECCCCc
Confidence            9999853

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.12  E-value=0.0012  Score=56.96  Aligned_cols=77  Identities=18%  Similarity=0.170  Sum_probs=55.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeC------------CC-----ChHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADV------------TE-----GSAK  127 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl------------~d-----~~~~  127 (252)
                      .+.+|+|+|+ |-+|..+++.+...|.+|++.+|++++.+....   .+.+++..|+            ++     ..+.
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~---lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~  258 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS---VGAQWLDLGIDAAGEGGYARELSEAERAQQQQA  258 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH---TTCEECCCC-------------CHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---cCCeEEeccccccccccchhhhhHHHHhhhHHH
Confidence            4689999998 999999999999999999999999876654322   1333333221            00     0245


Q ss_pred             HHHHHcCCCcEEEEcCCCC
Q 025456          128 LSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus       128 ~~~~~~~~~d~vi~~ag~~  146 (252)
                      +.+.+.+ .|+||.++.+.
T Consensus       259 l~e~l~~-aDIVI~tv~iP  276 (381)
T 3p2y_A          259 LEDAITK-FDIVITTALVP  276 (381)
T ss_dssp             HHHHHTT-CSEEEECCCCT
T ss_pred             HHHHHhc-CCEEEECCCCC
Confidence            6777888 99999987543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.10  E-value=0.00075  Score=58.01  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHH-CCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC-hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+|+|+||+|.+|...++.+.. .|.+|+++++++++.+.... .+  .+.+ .|..++ .+.+.+.-.+.+|+||.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~-lG--ad~v-i~~~~~~~~~v~~~~~~g~Dvvid~  246 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS-LG--AHHV-IDHSKPLAAEVAALGLGAPAFVFST  246 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-TT--CSEE-ECTTSCHHHHHHTTCSCCEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-cC--CCEE-EeCCCCHHHHHHHhcCCCceEEEEC
Confidence            478999999999999998877765 58999999998776554322 22  2211 233331 233333311149999999


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      +|
T Consensus       247 ~g  248 (363)
T 4dvj_A          247 TH  248 (363)
T ss_dssp             SC
T ss_pred             CC
Confidence            87

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.10  E-value=0.0026  Score=54.59  Aligned_cols=95  Identities=22%  Similarity=0.171  Sum_probs=57.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhh-h---hccccCC--------CCeEEEEeeCCCChHHHHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKA-K---TTLSKDN--------PSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~-~---~~~~~~~--------~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      +++|.|.||+|.+|+.+++.|++++ .+|+.+.++.... +   ...+...        ..+.+.  +. | .+   ++.
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~---~~~   80 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVI--PT-D-PK---HEE   80 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCE--ES-C-TT---SGG
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEE--eC-C-HH---HHh
Confidence            4799999999999999999998875 5787776532211 1   1111000        011111  11 2 12   233


Q ss_pred             c-CCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          133 G-DDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       133 ~-~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      . + +|+||.|.+..              ....+++.+.+.|+ ++|-.|+.
T Consensus        81 ~~~-~DvV~~atp~~--------------~~~~~a~~~~~aG~-~VId~s~~  116 (354)
T 1ys4_A           81 FED-VDIVFSALPSD--------------LAKKFEPEFAKEGK-LIFSNASA  116 (354)
T ss_dssp             GTT-CCEEEECCCHH--------------HHHHHHHHHHHTTC-EEEECCST
T ss_pred             cCC-CCEEEECCCch--------------HHHHHHHHHHHCCC-EEEECCch
Confidence            4 6 99999998631              24456666677786 57766664

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.09  E-value=0.0011  Score=56.44  Aligned_cols=74  Identities=20%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+|+|+|+ |.+|...++.+...|.+|+++++++++.+.... ....  . ..|..+.  .+.+.+...+ +|+||.+
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~--~-~i~~~~~~~~~~~~~~~g~-~d~vid~  239 (340)
T 3s2e_A          166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR-LGAE--V-AVNARDTDPAAWLQKEIGG-AHGVLVT  239 (340)
T ss_dssp             TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCS--E-EEETTTSCHHHHHHHHHSS-EEEEEES
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-cCCC--E-EEeCCCcCHHHHHHHhCCC-CCEEEEe
Confidence            5789999997 899999999888899999999998877654322 2221  1 1354441  2344444455 9999999


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      +|
T Consensus       240 ~g  241 (340)
T 3s2e_A          240 AV  241 (340)
T ss_dssp             SC
T ss_pred             CC
Confidence            87

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.08  E-value=0.0008  Score=53.84  Aligned_cols=73  Identities=21%  Similarity=0.326  Sum_probs=52.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .++++++|+|.|| |-+|...++.|++.|++|++++.+.... ..+..  ..+++++..+..+      +.+.+ +|.||
T Consensus        27 l~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~--~~~i~~i~~~~~~------~dL~~-adLVI   96 (223)
T 3dfz_A           27 LDLKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVSAEINEWEA--KGQLRVKRKKVGE------EDLLN-VFFIV   96 (223)
T ss_dssp             ECCTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHH--TTSCEEECSCCCG------GGSSS-CSEEE
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH--cCCcEEEECCCCH------hHhCC-CCEEE
Confidence            4567999999997 8999999999999999999988765432 22221  2457777655543      23566 89888


Q ss_pred             EcCC
Q 025456          141 CATG  144 (252)
Q Consensus       141 ~~ag  144 (252)
                      -+.+
T Consensus        97 aAT~  100 (223)
T 3dfz_A           97 VATN  100 (223)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            6543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.08  E-value=0.0014  Score=55.19  Aligned_cols=105  Identities=14%  Similarity=0.083  Sum_probs=69.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhc---cccC---CCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTT---LSKD---NPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~---~~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      ++|.|+|| |.+|..++-.|+..+  .+|++++++.++.+..   +.+.   ..++.+.. |  +     .+++.+ .|+
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~-----~~a~~~-aD~   70 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--S-----YGDLEG-ARA   70 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--C-----GGGGTT-EEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--C-----HHHhCC-CCE
Confidence            58999998 999999999999887  5899999987655421   1111   12334432 2  2     234778 999


Q ss_pred             EEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       139 vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      ||..+|....  .+..+.+..|......+.+.+++.+. ..++.+|
T Consensus        71 Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  116 (310)
T 2xxj_A           71 VVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT  116 (310)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence            9999987542  22223456677777788888877653 3555554

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=97.07  E-value=0.0037  Score=53.38  Aligned_cols=106  Identities=16%  Similarity=0.265  Sum_probs=67.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCch-------------------hhh---hccccCCCCe--EEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD-------------------KAK---TTLSKDNPSL--QIV  117 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~-------------------~~~---~~~~~~~~~~--~~i  117 (252)
                      .+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.=                   +.+   +.+....+.+  +.+
T Consensus        33 ~L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~  111 (346)
T 1y8q_A           33 RLRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD  111 (346)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence            345789999996 8999999999999996 7887754320                   110   0111122333  334


Q ss_pred             EeeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeec
Q 025456          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (252)
Q Consensus       118 ~~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~  187 (252)
                      ..++.+   ...+.+.+ +|+||.+..             |...-..+-++|++.++ .+|..++.+.+|
T Consensus       112 ~~~~~~---~~~~~~~~-~dvVv~~~d-------------~~~~r~~ln~~~~~~~i-p~i~~~~~G~~G  163 (346)
T 1y8q_A          112 TEDIEK---KPESFFTQ-FDAVCLTCC-------------SRDVIVKVDQICHKNSI-KFFTGDVFGYHG  163 (346)
T ss_dssp             CSCGGG---CCHHHHTT-CSEEEEESC-------------CHHHHHHHHHHHHHTTC-EEEEEEEEBTEE
T ss_pred             ecccCc---chHHHhcC-CCEEEEcCC-------------CHHHHHHHHHHHHHcCC-CEEEEeecccEE
Confidence            444432   23456777 999998742             34445567788888886 677776655433

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.07  E-value=0.0038  Score=52.45  Aligned_cols=108  Identities=15%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhh--hc-cccC---CCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAK--TT-LSKD---NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~--~~-~~~~---~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      +++|.|+|+ |.+|..++..|++.|+  +|++++|+++..+  .. +...   .....+...  ++ .    +.+.+ +|
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~----~~~~~-aD   77 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DD-P----EICRD-AD   77 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SC-G----GGGTT-CS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CC-H----HHhCC-CC
Confidence            579999998 9999999999999998  9999999875543  11 1100   012222221  12 2    24567 99


Q ss_pred             EEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       138 ~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +||.+++....  .+..+.+..|......+++.+++.+.+.+|...+
T Consensus        78 ~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~  124 (319)
T 1lld_A           78 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  124 (319)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            99999975431  1222233455665666777776554333443333

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.07  E-value=0.0017  Score=57.42  Aligned_cols=96  Identities=11%  Similarity=0.222  Sum_probs=62.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-C---eEEEeecCchhhhhccccCCCCeEEEEeeCCCC-h-HHHHHHHcCCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-F---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-S-AKLSEAIGDDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~-~~~~~~~~~~~d~v  139 (252)
                      .++|+|.| .|+||+.+++.|++++ .   +|++++.+.... +..+  ..++.+...+++++ . +.+.+++.+ -|+|
T Consensus        13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-~~~~--~~g~~~~~~~Vdadnv~~~l~aLl~~-~DvV   87 (480)
T 2ph5_A           13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-DVAQ--QYGVSFKLQQITPQNYLEVIGSTLEE-NDFL   87 (480)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-CHHH--HHTCEEEECCCCTTTHHHHTGGGCCT-TCEE
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-hHHh--hcCCceeEEeccchhHHHHHHHHhcC-CCEE
Confidence            36799999 5999999999999864 4   688877654432 1111  11356666676551 2 335567777 6999


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      ||++-..              ....++++|.++|+ .+|-++
T Consensus        88 IN~s~~~--------------~~l~Im~acleaGv-~YlDTa  114 (480)
T 2ph5_A           88 IDVSIGI--------------SSLALIILCNQKGA-LYINAA  114 (480)
T ss_dssp             EECCSSS--------------CHHHHHHHHHHHTC-EEEESS
T ss_pred             EECCccc--------------cCHHHHHHHHHcCC-CEEECC
Confidence            9865221              14578999999997 444443

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.07  E-value=0.004  Score=52.80  Aligned_cols=105  Identities=21%  Similarity=0.121  Sum_probs=67.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc---ccc------CCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT---LSK------DNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~---~~~------~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      .++|.|+|| |.+|..++..|+..|+ +|++.+++++..+..   +..      ...++...    +|    . +++.+ 
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t----~d----~-~al~~-   82 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE----NN----Y-EYLQN-   82 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE----SC----G-GGGTT-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC----CC----H-HHHCC-
Confidence            468999998 9999999999999998 999999987665421   110      01122211    12    2 45778 


Q ss_pred             CcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .|+||.++|....  ....+....|..-...+.+.+.+.... .++.+|
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  131 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT  131 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999999986432  122233445666677777777665433 444443

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.06  E-value=0.002  Score=55.67  Aligned_cols=70  Identities=14%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      +.+++|+|.|+ |.+|+.+++.+.+.|++|++++.+++.......     -..+..|..| .+.+.++... +|+|.-
T Consensus        10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~a-----d~~~~~~~~d-~~~l~~~~~~-~dvi~~   79 (377)
T 3orq_A           10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVA-----HEFIQAKYDD-EKALNQLGQK-CDVITY   79 (377)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGS-----SEEEECCTTC-HHHHHHHHHH-CSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhhhhC-----CEEEECCCCC-HHHHHHHHHh-CCccee
Confidence            35799999996 899999999999999999999876653322221     1456688888 8888888887 898753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.06  E-value=0.0062  Score=51.29  Aligned_cols=105  Identities=16%  Similarity=0.068  Sum_probs=65.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhcc---cc------CCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTL---SK------DNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~---~~------~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      .++|.|+|+ |.+|..++..|++.|+ +|++.+++++..+...   ..      ...++...    +|    . +.+.+ 
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d----~-~a~~~-   72 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT----DD----Y-ADISG-   72 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE----SC----G-GGGTT-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC----CC----H-HHhCC-
Confidence            468999998 9999999999999998 9999999876554310   00      01122111    12    2 35677 


Q ss_pred             CcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .|+||.++|....  ....+.+.-|......+++.+.+.... .++.+|
T Consensus        73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~s  121 (317)
T 2ewd_A           73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT  121 (317)
T ss_dssp             CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            9999999986442  122233344555566677776655333 344444

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.05  E-value=0.00031  Score=59.16  Aligned_cols=106  Identities=14%  Similarity=0.063  Sum_probs=66.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCchhhhhcc---ccC----CCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTL---SKD----NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~---~~~----~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      ++|.|+|+ |.+|..++..|++.  |++|+++++++++.+...   ...    .....+...  +|    ..+ +.+ .|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d----~~~-l~~-aD   71 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--ND----YAD-TAN-SD   71 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SC----GGG-GTT-CS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC--CC----HHH-HCC-CC
Confidence            47999998 99999999999985  789999999886554321   100    011121110  22    222 677 99


Q ss_pred             EEEEcCCCCCCC--CCCCcceehHHHHHHHHHHHHhcCC-CEEEEEc
Q 025456          138 AVVCATGFQPGW--DLFAPWKVDNFGTVNLVEACRKRGV-NRFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~~~--~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~S  181 (252)
                      +||.+++.....  ...+.+..|......+.+.+++... ..++.++
T Consensus        72 vViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t  118 (310)
T 1guz_A           72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (310)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            999999864321  1223344667777788887776643 3555553

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=97.02  E-value=0.00047  Score=58.18  Aligned_cols=72  Identities=21%  Similarity=0.161  Sum_probs=48.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +|+|+||+|.+|...++.+...|++|+++++++++.+.... .+.. .+  .|..+ .+.+++...+.+|++|.++|
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~-~v--i~~~~-~~~~~~~~~~~~d~v~d~~g  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS-LGAN-RI--LSRDE-FAESRPLEKQLWAGAIDTVG  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH-HTCS-EE--EEGGG-SSCCCSSCCCCEEEEEESSC
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCC-EE--EecCC-HHHHHhhcCCCccEEEECCC
Confidence            39999999999999999888899999999998876654322 1111 11  24333 22222222224899999886

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.02  E-value=0.003  Score=54.07  Aligned_cols=95  Identities=17%  Similarity=0.126  Sum_probs=57.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeec-Cchhhh---hccccC--------CCCeEEEEeeCCCChHHHHHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVR-DLDKAK---TTLSKD--------NPSLQIVKADVTEGSAKLSEA  131 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r-~~~~~~---~~~~~~--------~~~~~~i~~Dl~d~~~~~~~~  131 (252)
                      ++++|.|.||+|.+|+.+++.|.++. .+|+.+.. +....+   ...+..        ...+.+  .|+ | .+.    
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-d-~~~----   74 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPI--VST-N-YED----   74 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBE--ECS-S-GGG----
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEE--eeC-C-HHH----
Confidence            35799999999999999999998865 47777752 211111   111100        011111  222 2 222    


Q ss_pred             HcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          132 IGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       132 ~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +.+ +|+||.|.+..              ....+.+.+.++|+ ++|-.|+.
T Consensus        75 ~~~-vDvVf~atp~~--------------~s~~~a~~~~~aG~-~VId~s~~  110 (350)
T 2ep5_A           75 HKD-VDVVLSALPNE--------------LAESIELELVKNGK-IVVSNASP  110 (350)
T ss_dssp             GTT-CSEEEECCCHH--------------HHHHHHHHHHHTTC-EEEECSST
T ss_pred             hcC-CCEEEECCChH--------------HHHHHHHHHHHCCC-EEEECCcc
Confidence            356 99999887621              24567777778887 57776664

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.01  E-value=0.0017  Score=54.61  Aligned_cols=42  Identities=29%  Similarity=0.354  Sum_probs=36.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~  106 (252)
                      .++++|.|.|. |.+|..+++.|++.|++|++.+|++++.+..
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l   60 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKCDEL   60 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHH
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            35789999985 9999999999999999999999998876554

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=97.01  E-value=0.003  Score=54.08  Aligned_cols=70  Identities=19%  Similarity=0.097  Sum_probs=51.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ||+|+|+|| |..|..++..+.+.|++|++++.+++.....+.     =+++..|..++.+.+.+..++ +|+|+-.
T Consensus         1 MK~I~ilGg-g~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~a-----D~~~~~~~~~d~~~~~~~~~~-~D~v~~~   70 (363)
T 4ffl_A            1 MKTICLVGG-KLQGFEAAYLSKKAGMKVVLVDKNPQALIRNYA-----DEFYCFDVIKEPEKLLELSKR-VDAVLPV   70 (363)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTTTTS-----SEEEECCTTTCHHHHHHHHTS-SSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCChhHhhC-----CEEEECCCCcCHHHHHHHhcC-CCEEEEC
Confidence            689999996 899999999999999999999887654332111     145566766545666666666 9988743

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=97.01  E-value=0.00062  Score=58.90  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=53.3

Q ss_pred             CCcEEEEEc-CCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAG-ATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtG-atG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi  140 (252)
                      .+.+|+|.| |+|.+|...++.+...|++|+++++++++.+.... ..... +  .|..+.  .+.+.+...+ .+|+||
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~-~--~~~~~~~~~~~v~~~t~~~g~d~v~  245 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA-QGAVH-V--CNAASPTFMQDLTEALVSTGATIAF  245 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHH-TTCSC-E--EETTSTTHHHHHHHHHHHHCCCEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-CCCcE-E--EeCCChHHHHHHHHHhcCCCceEEE
Confidence            578999997 99999999998888889999999998877654332 21111 1  344431  2344444432 399999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      .++|.
T Consensus       246 d~~g~  250 (379)
T 3iup_A          246 DATGG  250 (379)
T ss_dssp             ESCEE
T ss_pred             ECCCc
Confidence            99984

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.00  E-value=0.0013  Score=55.50  Aligned_cols=104  Identities=18%  Similarity=0.154  Sum_probs=64.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhcccc------CCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~------~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      ++|.|+|+ |.+|..++..|++.|+  +|++++++++..+.....      ......+..   +| .    +.+.+ .|+
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~d-~----~~~~~-aDv   70 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---GD-Y----ADLKG-SDV   70 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---CC-G----GGGTT-CSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---CC-H----HHhCC-CCE
Confidence            47999998 9999999999999998  999999987655432110      001122221   23 2    24567 999


Q ss_pred             EEEcCCCCCCC--CCCCcceehHHHHHHHHHHHHhcCCC-EEEEE
Q 025456          139 VVCATGFQPGW--DLFAPWKVDNFGTVNLVEACRKRGVN-RFILI  180 (252)
Q Consensus       139 vi~~ag~~~~~--~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~  180 (252)
                      ||.+++.....  ...+....|......+++.+.+.... .+|.+
T Consensus        71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~  115 (319)
T 1a5z_A           71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVV  115 (319)
T ss_dssp             EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99998864321  11223344555566777777654333 44444

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.00  E-value=0.0062  Score=49.38  Aligned_cols=99  Identities=19%  Similarity=0.217  Sum_probs=59.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH----HcCCCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA----IGDDSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~----~~~~~d~vi~  141 (252)
                      ++|+|.|++|.+|+.+++.+.+. +++++++....+..+..+.   .+.+ +..|.+. ++.+.+.    +...+++|+-
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~---~~~D-vvIDfT~-p~a~~~~~~~a~~~g~~~Vig   75 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD---GNTE-VVIDFTH-PDVVMGNLEFLIDNGIHAVVG   75 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH---TTCC-EEEECSC-TTTHHHHHHHHHHTTCEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc---cCCc-EEEEccC-hHHHHHHHHHHHHcCCCEEEc
Confidence            47999999999999999999875 8998876654433333222   1233 5678887 4444332    3223788875


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~  183 (252)
                      ..|...            .-...+.+++++. ++ .+++.+..
T Consensus        76 TTG~~~------------e~~~~l~~aa~~~~~~-~vv~a~N~  105 (245)
T 1p9l_A           76 TTGFTA------------ERFQQVESWLVAKPNT-SVLIAPNF  105 (245)
T ss_dssp             CCCCCH------------HHHHHHHHHHHTSTTC-EEEECSCC
T ss_pred             CCCCCH------------HHHHHHHHHHHhCCCC-CEEEECCc
Confidence            554221            1123445555655 44 56665553

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=96.98  E-value=0.0034  Score=57.69  Aligned_cols=104  Identities=16%  Similarity=0.187  Sum_probs=66.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCch---hhhh-------------------ccccCCC--CeEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD---KAKT-------------------TLSKDNP--SLQIVK  118 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~---~~~~-------------------~~~~~~~--~~~~i~  118 (252)
                      +++.+|+|.|+ |++|.++++.|+..|. ++++++.+.=   .+..                   .+....+  +++.+.
T Consensus        15 L~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~   93 (640)
T 1y8q_B           15 VAGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYH   93 (640)
T ss_dssp             HHHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEE
T ss_pred             HhcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEe
Confidence            34689999997 9999999999999996 7888876531   1110                   0111222  345555


Q ss_pred             eeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          119 ADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       119 ~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      .++++ .....+.+.+ +|+||.+..             |...-..+-+.|.+.++ .+|..++.+
T Consensus        94 ~~i~~-~~~~~~~~~~-~DlVvda~D-------------n~~aR~~ln~~c~~~~i-PlI~~g~~G  143 (640)
T 1y8q_B           94 DSIMN-PDYNVEFFRQ-FILVMNALD-------------NRAARNHVNRMCLAADV-PLIESGTAG  143 (640)
T ss_dssp             SCTTS-TTSCHHHHTT-CSEEEECCS-------------CHHHHHHHHHHHHHHTC-CEEEEEEET
T ss_pred             cccch-hhhhHhhhcC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEEec
Confidence            56654 2223456777 999998753             34455667788888886 466655443

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.98  E-value=0.0018  Score=56.13  Aligned_cols=76  Identities=13%  Similarity=0.146  Sum_probs=52.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC--------------------
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--------------------  123 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d--------------------  123 (252)
                      ..+++|+|+|+ |.+|..+++.+...|.+|++.+|++.+.+....   -+.+++..|..+                    
T Consensus       170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~---~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~  245 (384)
T 1l7d_A          170 VPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVES---LGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  245 (384)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH---TTCEECCC-----------------------C
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---cCCeEEeecccccccccccccchhhcCHHHHh
Confidence            46899999996 999999999999999999999998765543221   122222111100                    


Q ss_pred             -ChHHHHHHHcCCCcEEEEcCC
Q 025456          124 -GSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus       124 -~~~~~~~~~~~~~d~vi~~ag  144 (252)
                       ..+.+.+.+.+ .|+||+++.
T Consensus       246 ~~~~~l~~~~~~-aDvVi~~~~  266 (384)
T 1l7d_A          246 KQAEAVLKELVK-TDIAITTAL  266 (384)
T ss_dssp             CHHHHHHHHHTT-CSEEEECCC
T ss_pred             hhHHHHHHHhCC-CCEEEECCc
Confidence             02336677788 999999883

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.98  E-value=0.0049  Score=50.81  Aligned_cols=38  Identities=26%  Similarity=0.433  Sum_probs=33.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++++++|+|.|| |-+|...++.|++.|++|++++.+.
T Consensus         9 ~~l~~k~VLVVGg-G~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             ECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEcCCCEEEEECC-cHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3457899999997 8999999999999999999988654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.96  E-value=0.0042  Score=56.50  Aligned_cols=69  Identities=22%  Similarity=0.176  Sum_probs=56.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ++++|.|+ |-+|.++++.|.+.|++|++++++++..++.       ..++.+|.+| .+.++++=-++.|++|-+.+
T Consensus       349 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~-------~~~i~gD~t~-~~~L~~agi~~ad~vi~~~~  417 (565)
T 4gx0_A          349 ELIFIIGH-GRIGCAAAAFLDRKPVPFILIDRQESPVCND-------HVVVYGDATV-GQTLRQAGIDRASGIIVTTN  417 (565)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSCCSSCCS-------SCEEESCSSS-STHHHHHTTTSCSEEEECCS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECChHHHhhc-------CCEEEeCCCC-HHHHHhcCccccCEEEEECC
Confidence            78999998 9999999999999999999999998765431       1789999999 67676653224999997765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.95  E-value=0.006  Score=53.62  Aligned_cols=77  Identities=19%  Similarity=0.138  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCC----CeE-EE---EeeCCCChHHHHHHHcCCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP----SLQ-IV---KADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~-~i---~~Dl~d~~~~~~~~~~~~~  136 (252)
                      ..++|.|.|+ |.+|..++..|++ |++|++.++++++.+.+..+..+    +++ ++   ...+.- ..+..+++.+ .
T Consensus        35 ~~mkIaVIGl-G~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~-ttd~~ea~~~-a  110 (432)
T 3pid_A           35 EFMKITISGT-GYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA-TTDKHDAYRN-A  110 (432)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE-ESCHHHHHTT-C
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEE-EcCHHHHHhC-C
Confidence            4679999985 9999999999887 99999999998877654331110    000 00   000100 1224556777 9


Q ss_pred             cEEEEcCCC
Q 025456          137 EAVVCATGF  145 (252)
Q Consensus       137 d~vi~~ag~  145 (252)
                      |+||-+...
T Consensus       111 DvViiaVPt  119 (432)
T 3pid_A          111 DYVIIATPT  119 (432)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeCCC
Confidence            999988653

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.94  E-value=0.00023  Score=60.30  Aligned_cols=74  Identities=23%  Similarity=0.300  Sum_probs=47.7

Q ss_pred             Cc-EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCCh--HHHHHHHcCCCcEEEEc
Q 025456           66 QK-KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS--AKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~-~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~--~~~~~~~~~~~d~vi~~  142 (252)
                      +. +|+|+||+|++|...++.+...|++|+++++++++.+.... .... .+  .|..+ .  +.+.+...+.+|+||++
T Consensus       150 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-lGa~-~v--~~~~~-~~~~~~~~~~~~~~d~vid~  224 (330)
T 1tt7_A          150 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ-LGAS-EV--ISRED-VYDGTLKALSKQQWQGAVDP  224 (330)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH-HTCS-EE--EEHHH-HCSSCCCSSCCCCEEEEEES
T ss_pred             CCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCc-EE--EECCC-chHHHHHHhhcCCccEEEEC
Confidence            44 89999999999999999888889999999998766543221 1111 11  23222 1  11111111138999999


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      +|
T Consensus       225 ~g  226 (330)
T 1tt7_A          225 VG  226 (330)
T ss_dssp             CC
T ss_pred             Cc
Confidence            87

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.94  E-value=0.0022  Score=53.02  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=46.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ++.+++++|.|+++.+|+.++..|+++|..|++..+..                         ..+.+.+.. .|+||.+
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t-------------------------~~L~~~~~~-ADIVI~A  210 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------------------KDLSLYTRQ-ADLIIVA  210 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------------------SCHHHHHTT-CSEEEEC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-------------------------hhHHHHhhc-CCEEEEC
Confidence            56899999999999999999999999999999876532                         124456677 8999888


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      .|..
T Consensus       211 vg~p  214 (285)
T 3p2o_A          211 AGCV  214 (285)
T ss_dssp             SSCT
T ss_pred             CCCC
Confidence            8743

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.93  E-value=0.0014  Score=57.19  Aligned_cols=76  Identities=16%  Similarity=0.119  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi  140 (252)
                      .+.+|+|+|+ |.+|...++.+...|. +|+++++++++.+.... .+  ++. ..|..+.  .+.+.+...+ .+|+||
T Consensus       213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~-lG--a~~-vi~~~~~~~~~~i~~~t~g~g~D~vi  287 (404)
T 3ip1_A          213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE-LG--ADH-VIDPTKENFVEAVLDYTNGLGAKLFL  287 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HT--CSE-EECTTTSCHHHHHHHHTTTCCCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-cC--CCE-EEcCCCCCHHHHHHHHhCCCCCCEEE
Confidence            5789999998 9999999988888998 89998888776553222 11  111 1244331  2445555443 499999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      .++|.
T Consensus       288 d~~g~  292 (404)
T 3ip1_A          288 EATGV  292 (404)
T ss_dssp             ECSSC
T ss_pred             ECCCC
Confidence            99884

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.93  E-value=0.0027  Score=55.21  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=55.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEee----------------CCCC----
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKAD----------------VTEG----  124 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~D----------------l~d~----  124 (252)
                      .+.+|+|+|+ |-+|...++.+...|.+|++.++++.+.+....   .+.+++..+                ++++    
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~---~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~  264 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVAS---LGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVK  264 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH---TTCEECCCCC-----------------CHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH---cCCceeecccccccccccccchhhhcchhhhhh
Confidence            4689999998 999999999999999999999999876544322   122332221                2331    


Q ss_pred             -hHHHHHHHcCCCcEEEEcCCCC
Q 025456          125 -SAKLSEAIGDDSEAVVCATGFQ  146 (252)
Q Consensus       125 -~~~~~~~~~~~~d~vi~~ag~~  146 (252)
                       .+.+.+.+.+ .|+||.++...
T Consensus       265 ~~~~l~e~l~~-aDVVI~tvlip  286 (405)
T 4dio_A          265 QAALVAEHIAK-QDIVITTALIP  286 (405)
T ss_dssp             HHHHHHHHHHT-CSEEEECCCCS
T ss_pred             hHhHHHHHhcC-CCEEEECCcCC
Confidence             2467778888 99999987654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.91  E-value=0.0027  Score=54.70  Aligned_cols=76  Identities=13%  Similarity=-0.003  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCC----ChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE----GSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d----~~~~~~~~~~~~~d~v  139 (252)
                      .+.+|+|+|+ |.+|...++.+...|. +|+++++++++.+.... ..  ++. ..|..+    ..+.+.+...+.+|+|
T Consensus       195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lG--a~~-vi~~~~~~~~~~~~v~~~~~~g~Dvv  269 (376)
T 1e3i_A          195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-LG--ATD-CLNPRELDKPVQDVITELTAGGVDYS  269 (376)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TT--CSE-EECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hC--CcE-EEccccccchHHHHHHHHhCCCccEE
Confidence            4789999996 9999999998888898 79999888776554322 21  211 134432    0233444333249999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |.++|.
T Consensus       270 id~~G~  275 (376)
T 1e3i_A          270 LDCAGT  275 (376)
T ss_dssp             EESSCC
T ss_pred             EECCCC
Confidence            999874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.91  E-value=0.0027  Score=54.65  Aligned_cols=76  Identities=17%  Similarity=0.034  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCC----ChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE----GSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d----~~~~~~~~~~~~~d~v  139 (252)
                      .+.+|+|+|+ |.+|...++.+...|. +|+++++++++.+.... .  +++. ..|..+    ..+.+.+...+.+|+|
T Consensus       192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~-l--Ga~~-vi~~~~~~~~~~~~~~~~~~~g~D~v  266 (374)
T 1cdo_A          192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-F--GATD-FVNPNDHSEPISQVLSKMTNGGVDFS  266 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T--TCCE-EECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-h--CCce-EEeccccchhHHHHHHHHhCCCCCEE
Confidence            4789999996 9999999998888998 79998888776653322 1  2221 134432    0233444333249999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |+++|.
T Consensus       267 id~~g~  272 (374)
T 1cdo_A          267 LECVGN  272 (374)
T ss_dssp             EECSCC
T ss_pred             EECCCC
Confidence            999874

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.90  E-value=0.00048  Score=54.94  Aligned_cols=41  Identities=15%  Similarity=0.218  Sum_probs=35.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEE-eecCchhhhh
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKA-GVRDLDKAKT  105 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~-~~r~~~~~~~  105 (252)
                      +++++|.|.| +|.+|.++++.|++.|++|++ .+|++++.+.
T Consensus        21 m~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~   62 (220)
T 4huj_A           21 QSMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPASLSS   62 (220)
T ss_dssp             GGSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGGGHH
T ss_pred             hcCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHHHHH
Confidence            3468999999 699999999999999999998 8888876654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.89  E-value=0.0027  Score=53.52  Aligned_cols=42  Identities=26%  Similarity=0.368  Sum_probs=36.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~  107 (252)
                      .+++|.|.|. |.+|..+++.|++.|++|++.+|++++.+...
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~   71 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAASLA   71 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH
Confidence            4679999986 99999999999999999999999988766543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.89  E-value=0.0016  Score=56.16  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCC--C--ChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVT--E--GSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~--d--~~~~~~~~~~~~~d~v  139 (252)
                      .+.+|+|+|+ |.+|...++.+...|+ +|+++++++++.+.... .  +++. ..|..  +  ..+.+.+...+.+|+|
T Consensus       193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~-l--Ga~~-vi~~~~~~~~~~~~i~~~~~gg~D~v  267 (378)
T 3uko_A          193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK-F--GVNE-FVNPKDHDKPIQEVIVDLTDGGVDYS  267 (378)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT-T--TCCE-EECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c--CCcE-EEccccCchhHHHHHHHhcCCCCCEE
Confidence            4789999998 9999999988888898 79999988877654322 2  2221 23443  1  1234444443349999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |.++|.
T Consensus       268 id~~g~  273 (378)
T 3uko_A          268 FECIGN  273 (378)
T ss_dssp             EECSCC
T ss_pred             EECCCC
Confidence            999883

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.88  E-value=0.0022  Score=56.29  Aligned_cols=70  Identities=20%  Similarity=0.203  Sum_probs=54.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      +.+++|+|.|+ |.+|+.+++.+.+.|++|++++.+++.......     -..+..|..| .+.+.++..+ +|+|+.
T Consensus        33 ~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~a-----d~~~~~~~~d-~~~l~~~a~~-~D~V~~  102 (419)
T 4e4t_A           33 LPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVA-----DRHLRAAYDD-EAALAELAGL-CEAVST  102 (419)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHS-----SEEECCCTTC-HHHHHHHHHH-CSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchhhhC-----CEEEECCcCC-HHHHHHHHhc-CCEEEE
Confidence            45789999996 899999999999999999998766543322221     1345578888 8888888877 999883

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=96.88  E-value=0.001  Score=57.03  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=49.2

Q ss_pred             CC-cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh---hhhccccCCCCeEEEEeeCC-----CChHHHHHHH--c
Q 025456           65 KQ-KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK---AKTTLSKDNPSLQIVKADVT-----EGSAKLSEAI--G  133 (252)
Q Consensus        65 ~~-~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~i~~Dl~-----d~~~~~~~~~--~  133 (252)
                      .+ .+|+|+||+|.+|...++.+...|++|++++++.++   ..+.+...... .++  |..     +..+.+.+..  .
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~-~vi--~~~~~~~~~~~~~i~~~t~~~  242 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT-QVI--TEDQNNSREFGPTIKEWIKQS  242 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS-EEE--EHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe-EEE--ecCccchHHHHHHHHHHhhcc
Confidence            47 899999999999999998887789999988876654   11111111111 122  221     1123455444  2


Q ss_pred             C-CCcEEEEcCC
Q 025456          134 D-DSEAVVCATG  144 (252)
Q Consensus       134 ~-~~d~vi~~ag  144 (252)
                      + .+|+||.++|
T Consensus       243 ~~g~Dvvid~~G  254 (364)
T 1gu7_A          243 GGEAKLALNCVG  254 (364)
T ss_dssp             TCCEEEEEESSC
T ss_pred             CCCceEEEECCC
Confidence            2 3999999987

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.87  E-value=0.0016  Score=56.34  Aligned_cols=99  Identities=13%  Similarity=0.062  Sum_probs=62.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCC---CC--hHHHHHHHcC-CCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT---EG--SAKLSEAIGD-DSE  137 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~---d~--~~~~~~~~~~-~~d  137 (252)
                      .+.+|+|+| +|.+|...++.+...| .+|+++++++++.+.... .... .+  .|..   +.  .+.+.+...+ .+|
T Consensus       195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~-lGa~-~v--i~~~~~~~~~~~~~v~~~~~g~g~D  269 (380)
T 1vj0_A          195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE-IGAD-LT--LNRRETSVEERRKAIMDITHGRGAD  269 (380)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH-TTCS-EE--EETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH-cCCc-EE--EeccccCcchHHHHHHHHhCCCCCc
Confidence            478999999 8999999999888899 699999998876654322 2211 12  3443   20  1234444432 399


Q ss_pred             EEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       138 ~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +||+++|...             .....++.++..  +++|.++..
T Consensus       270 vvid~~g~~~-------------~~~~~~~~l~~~--G~iv~~G~~  300 (380)
T 1vj0_A          270 FILEATGDSR-------------ALLEGSELLRRG--GFYSVAGVA  300 (380)
T ss_dssp             EEEECSSCTT-------------HHHHHHHHEEEE--EEEEECCCC
T ss_pred             EEEECCCCHH-------------HHHHHHHHHhcC--CEEEEEecC
Confidence            9999998421             122344444443  478887654

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.87  E-value=0.0012  Score=56.82  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--e---EEEeecCchh----hhh---ccccCC-CCeEEEEeeCCCChHHHHHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--A---VKAGVRDLDK----AKT---TLSKDN-PSLQIVKADVTEGSAKLSEA  131 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~---V~~~~r~~~~----~~~---~~~~~~-~~~~~i~~Dl~d~~~~~~~~  131 (252)
                      +..+|.|+||+|.||.+++-.|+..+.  +   |.+.+.+.+.    .+-   .+.+.. +-..-  ..+.+   ...+.
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~--v~i~~---~~y~~  105 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLRE--VSIGI---DPYEV  105 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEE--EEEES---CHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCC--cEEec---CCHHH
Confidence            357999999999999999999988763  2   6654443322    111   111111 11111  12222   13467


Q ss_pred             HcCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhc-CC-CEEEEEcc
Q 025456          132 IGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKR-GV-NRFILISS  182 (252)
Q Consensus       132 ~~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~-~~-~~~v~~SS  182 (252)
                      +.+ .|+||..||...  ..+..+.++.|..-...+.+.+.+. +. ..++.+|-
T Consensus       106 ~~d-aDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN  159 (375)
T 7mdh_A          106 FED-VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  159 (375)
T ss_dssp             TTT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             hCC-CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            788 999999998754  3345566788888888888888764 32 35666653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.86  E-value=0.0024  Score=55.68  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=53.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCC-------------CCh-----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT-------------EGS-----  125 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~-------------d~~-----  125 (252)
                      ..+++|+|+|+ |.+|..+++.+...|.+|++.++++.+.+.... .  +.+++..|..             + .     
T Consensus       170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~-l--Ga~~~~~~~~~~~~~~~g~~~~~~-~~~~~~  244 (401)
T 1x13_A          170 VPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M--GAEFLELDFKEEAGSGDGYAKVMS-DAFIKA  244 (401)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHH-T--TCEECCC--------CCHHHHHHS-HHHHHH
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-c--CCEEEEecccccccccccchhhcc-HHHHHH
Confidence            35789999996 999999999999999999999998876554321 1  3333322221             1 1     


Q ss_pred             --HHHHHHHcCCCcEEEEcCCC
Q 025456          126 --AKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus       126 --~~~~~~~~~~~d~vi~~ag~  145 (252)
                        +.+.+.+.+ .|+||.+++.
T Consensus       245 ~~~~l~e~~~~-aDvVI~~~~~  265 (401)
T 1x13_A          245 EMELFAAQAKE-VDIIVTTALI  265 (401)
T ss_dssp             HHHHHHHHHHH-CSEEEECCCC
T ss_pred             HHHHHHHHhCC-CCEEEECCcc
Confidence              136667777 9999999754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.85  E-value=0.0021  Score=55.30  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=49.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHH---HHcCCCcE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSE---AIGDDSEA  138 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~---~~~~~~d~  138 (252)
                      .+.+|+|+|+ |.+|...++.+...|+ +|+++++++++.+.... .+  ++. ..|..+.  .+.+.+   ...+.+|+
T Consensus       182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lG--a~~-vi~~~~~~~~~~i~~~~~~~~gg~Dv  256 (370)
T 4ej6_A          182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLAEE-VG--ATA-TVDPSAGDVVEAIAGPVGLVPGGVDV  256 (370)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HT--CSE-EECTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-cC--CCE-EECCCCcCHHHHHHhhhhccCCCCCE
Confidence            5789999998 9999999988888998 88888888766543221 11  111 2344441  122332   11124999


Q ss_pred             EEEcCCC
Q 025456          139 VVCATGF  145 (252)
Q Consensus       139 vi~~ag~  145 (252)
                      ||.++|.
T Consensus       257 vid~~G~  263 (370)
T 4ej6_A          257 VIECAGV  263 (370)
T ss_dssp             EEECSCC
T ss_pred             EEECCCC
Confidence            9999873

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.85  E-value=0.0015  Score=55.63  Aligned_cols=76  Identities=20%  Similarity=0.201  Sum_probs=49.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEE------eeCCCChHHHHHHHcCCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVK------ADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~------~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      .++|.|.|+ |.+|..++..|++.|++|++++|+++..+......  ++.+..      ..+....++..+.+.+ +|+|
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~D~v   79 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG--AIIAEGPGLAGTAHPDLLTSDIGLAVKD-ADVI   79 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT--SEEEESSSCCEEECCSEEESCHHHHHTT-CSEE
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC--CeEEeccccccccccceecCCHHHHHhc-CCEE
Confidence            478999996 99999999999999999999999887655432211  111110      1110001224455667 9999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |.+...
T Consensus        80 i~~v~~   85 (359)
T 1bg6_A           80 LIVVPA   85 (359)
T ss_dssp             EECSCG
T ss_pred             EEeCCc
Confidence            988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	4e-20
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	1e-16
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	2e-15
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	3e-15
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	4e-15
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	8e-14
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	1e-13
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	5e-13
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	9e-13
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	2e-12
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	2e-11
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	6e-11
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	5e-10
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	2e-08
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	3e-08
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	5e-08
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	6e-08
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	2e-07
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	4e-07
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	6e-07
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	7e-07
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-06
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	2e-06
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	4e-06
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	6e-06
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	2e-05
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	5e-05
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	5e-05
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	5e-04
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	0.001
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	0.004

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.2 bits (204), Expect = 4e-20
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 16/178 (8%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           KKI + GATG +G   + Q +  G+ V   VRD  +                       A
Sbjct: 4   KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL-----PSEGPRPAHVVVGDVLQA 58

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
              +      +AV+   G +       P  V + G  N+V A +  GV++ +  +S  + 
Sbjct: 59  ADVDKTVAGQDAVIVLLGTRNDLS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLL 115

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIM 244
                       +            ++  + +R+SG+ Y  + P  + ++P TG   +
Sbjct: 116 WDPTKVPPRLQAVT--------DDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTV 165

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 75.6 bits (185), Expect = 1e-16
 Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 14/178 (7%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAG--VRDLDKAKTTLSKDN-------PSLQIVK 118
           ++ V G  G  G   V QLLA  +       V  LD      ++ N       P L+ V 
Sbjct: 2   RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61

Query: 119 ADVTEGSAKLSEAIGDDS--EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNR 176
            D+ +      E  G D+       +   +         + +  GT  L++     GV R
Sbjct: 62  GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121

Query: 177 FILISSILVNGAAMGQILNPAYIF--LNVFGLT-LIAKLQAEQYIRKSGINYTIIRPG 231
            + +S+  V G+        +      + +  +   + L A  Y R  G++  I R  
Sbjct: 122 VVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCC 179

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 72.8 bits (177), Expect = 2e-15
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           ++K I V GATG  G  ++    A G  V+A V  L        +  P++ + +  +   
Sbjct: 2   QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNN 61

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS 181
              +         A +  T                    +L +A ++ G  +  + S
Sbjct: 62  VPLMDTLFEGAHLAFINTTSQAGDE---------IAIGKDLADAAKRAGTIQHYIYS 109

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 3e-15
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 23/193 (11%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEG 124
           K+I + G  G  G  + ++L+  G  V          K  +     + + +++  DV E 
Sbjct: 2   KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 61

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVNRFILIS 181
                + I         A+   P   ++ P    K +  GT+N++   ++ G  R +L S
Sbjct: 62  LYIEVDQI------YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 114

Query: 182 SILVNGAAMGQILNPAYIF-------LNVFGLT-LIAKLQAEQYIRKSGINYTIIRPG-- 231
           +  V G       +  Y            +     +A+     Y+++ G+   + R    
Sbjct: 115 TSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNT 174

Query: 232 -GLRNEPPTGNII 243
            G R     G ++
Sbjct: 175 FGPRMHMNDGRVV 187

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 71.8 bits (175), Expect = 4e-15
 Identities = 37/183 (20%), Positives = 56/183 (30%), Gaps = 18/183 (9%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD--------LDKAKTTLSKDNPSLQIVK 118
           K   + G TG  G  + E LL KG+ V    R         +D         NP   +  
Sbjct: 2   KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61

Query: 119 ADVTEGSAKLSEAIGDDSEAVVCATGFQ-PGWDLFAP---WKVDNFGTVNLVEACRKRGV 174
            D+++ S           + V              +P     VD  GT+ L+EA R  G+
Sbjct: 62  GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121

Query: 175 N---RFILISSILVNGAAMGQILNPAYIF--LNVFGLT-LIAKLQAEQYIRKSGINYTII 228
               RF   S+  + G            F   + + +  L A      Y    G+     
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNG 181

Query: 229 RPG 231
              
Sbjct: 182 ILF 184

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 67.6 bits (164), Expect = 8e-14
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 20/173 (11%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           +++F+AG  G  G  I  QL  +G      +R  D+    L           ++  +   
Sbjct: 3   QRVFIAGHRGMVGSAIRRQLEQRGDVE-LVLRTRDELN--LLDSRAVHDFFASERIDQVY 59

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
             +  +G           F            +     N++ A  +  VN+ + + S  + 
Sbjct: 60  LAAAKVGGIVANNTYPADF---------IYQNMMIESNIIHAAHQNDVNKLLFLGSSCIY 110

Query: 187 GAAMGQILN-------PAYIFLNVFGLT-LIAKLQAEQYIRKSGINYTIIRPG 231
                Q +                + +  +      E Y R+ G +Y  + P 
Sbjct: 111 PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPT 163

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 67.1 bits (162), Expect = 1e-13
 Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 11/167 (6%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K+ ++ + G TG  GKRIV   ++ G       R    +     +     + + A + E 
Sbjct: 2   KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 61

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
           S              +                      + LVEA ++ G  +  L S   
Sbjct: 62  SL----DDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFG 117

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
           ++   M   L P  I         I K +  + I  + I YT +   
Sbjct: 118 MDPDIMEHALQPGSIT-------FIDKRKVRRAIEAASIPYTYVSSN 157

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 65.4 bits (158), Expect = 5e-13
 Identities = 37/210 (17%), Positives = 69/210 (32%), Gaps = 13/210 (6%)

Query: 56  EEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKA-------GVRDLDKAKT-TL 107
           EE  + +  + K   + G  G  G  ++E LL     V           R+LD+ ++   
Sbjct: 6   EELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVS 65

Query: 108 SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDN--FGTVNL 165
            K   + + ++ D+       +   G D      A G  P               G +N+
Sbjct: 66  EKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNM 125

Query: 166 VEACRKRGVNRFILISSILVNGAAMGQILNPAYIF--LNVFGL-TLIAKLQAEQYIRKSG 222
           + A R   V  F   +S    G   G       I   L+ + +   + +L A+ + R  G
Sbjct: 126 LIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYG 185

Query: 223 INYTIIRPGGLRNEPPTGNIIMETEVRAFI 252
            +   +R   +       N      +  + 
Sbjct: 186 FSTIGLRYFNVFGRRQDPNGAYAAVIPKWT 215

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 64.8 bits (157), Expect = 9e-13
 Identities = 34/197 (17%), Positives = 59/197 (29%), Gaps = 32/197 (16%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTE 123
           KI + G  G  G  +V  ++         +  L  A    S     ++       AD+ +
Sbjct: 2   KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61

Query: 124 GSAKLSEAIGDDSEAVV--CATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVN--- 175
            SA+++          V   A        +  P    + +  GT  L+E  RK       
Sbjct: 62  -SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120

Query: 176 ------RFILISSILVNGAAMGQILNPAYIFLNVFGLTL---------IAKLQAEQ---- 216
                 RF  IS+  V G           + L +F  T           +K  ++     
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRA 180

Query: 217 YIRKSGINYTIIRPGGL 233
           + R  G+   +      
Sbjct: 181 WRRTYGLPTIVTNCSNN 197

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.8 bits (154), Expect = 2e-12
 Identities = 37/186 (19%), Positives = 58/186 (31%), Gaps = 12/186 (6%)

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI 116
           E E+    +  KI + GA G     I  +L  +G  V            T         +
Sbjct: 6   EREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVI-ASDWKKNEHMTEDMFCDEFHL 64

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFG-TVNLVEACRKRGVN 175
           V   V E   K++E +           G        +    +N   + N++EA R  G+ 
Sbjct: 65  VDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK 124

Query: 176 RFILISSILVNGAAMGQILNPAYIF---------LNVFGLT-LIAKLQAEQYIRKSGINY 225
           RF   SS  +             +           + FGL  L  +   + Y +  GI  
Sbjct: 125 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIEC 184

Query: 226 TIIRPG 231
            I R  
Sbjct: 185 RIGRFH 190

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 2e-11
 Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 26/188 (13%)

Query: 67  KKI-FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---------TLSKDNPSLQI 116
           + +  + G TG  G  + E LL KG+ V   VR      T           +    ++++
Sbjct: 1   RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKL 60

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGF----QPGWDLFAPWKVDNFGTVNLVEACRKR 172
              D+T+ +  +          +                     VD  GT+ L++A +  
Sbjct: 61  HYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC 120

Query: 173 GVN---RFILISSILVNGAAMGQILNPAYIF--LNVFGLTLIAKLQAEQ----YIRKSGI 223
           G+    +F   S+  + G            F   + +G    AKL A      +     +
Sbjct: 121 GLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYG---AAKLYAYWIVVNFREAYNL 177

Query: 224 NYTIIRPG 231
                   
Sbjct: 178 FAVNGILF 185

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 59.2 bits (142), Expect = 6e-11
 Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 10/182 (5%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTE 123
           ++ V G +G  G     QLL  G  V       +  ++ L             V+ D+  
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61

Query: 124 GSAKLSEAIGDDSEAVVCATGFQPGWDLF-----APWKVDNFGTVNLVEACRKRGVNRFI 178
             A ++E + D +   V                   +  +  GT+ L+ A R   V  FI
Sbjct: 62  -EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120

Query: 179 LISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPP 238
             SS  V G         ++           +KL  EQ +              LR   P
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180

Query: 239 TG 240
            G
Sbjct: 181 VG 182

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 56.7 bits (135), Expect = 5e-10
 Identities = 28/129 (21%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKA 119
           +   + V GA G     +VEQLL  G+ V+   R   K                   V  
Sbjct: 10  EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69

Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEAC-RKRGVNRFI 178
           D+ +      E I   +     A+                 GT+N + A      V RF+
Sbjct: 70  DMLK-QGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFV 128

Query: 179 LISSILVNG 187
           L SS +   
Sbjct: 129 LTSSTVSAL 137

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.5 bits (122), Expect = 2e-08
 Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 11/197 (5%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD---NPSLQIVKADVTE 123
           +   V G TG  G  + + LL KG+ V   V           ++      +Q    D+ +
Sbjct: 1   RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD 60

Query: 124 GSAKLSEAIGDDSEAVVCATGFQPGWDLFAPW----KVDNFGTVNLVEACRKRG-VNRFI 178
             +     I    + V            +        VD  G  +L+EA R+     RF 
Sbjct: 61  ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 120

Query: 179 LISSILVNGAAMGQIL--NPAYIFLNVFGLT-LIAKLQAEQYIRKSGINYTIIRPGGLRN 235
             S+  + G    +    N  +   + +G+  L        Y    G++ +        +
Sbjct: 121 QASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHES 180

Query: 236 EPPTGNIIMETEVRAFI 252
                  +      A  
Sbjct: 181 PLRGIEFVTRKVTDAVA 197

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN------PSLQIVK 118
           + K I V G  G  G   V  +      V   V  LDK     +K N        +++V 
Sbjct: 1   QFKNIIVTGGAGFIGSNFVHYVYNNHPDVH--VTVLDKLTYAGNKANLEAILGDRVELVV 58

Query: 119 ADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVN 175
            D+ + +  + +        V  A        L  P      +  GT  L+EA RK  + 
Sbjct: 59  GDIAD-AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI- 116

Query: 176 RFILISSILVNGAAMGQILNPAYIFLNVFGLTL-----------IAKLQAEQ----YIRK 220
           RF  +S+  V G    +   P +        T              K  ++     ++R 
Sbjct: 117 RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRS 176

Query: 221 SGINYTIIRPG 231
            G+  TI    
Sbjct: 177 FGVKATISNCS 187

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 50.6 bits (119), Expect = 5e-08
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD------LDKAKTTLSKDNPSLQIVKAD 120
            +I + GATG  G+ + +  L  G      VR+       +KA+   S       IV   
Sbjct: 4   SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 63

Query: 121 V 121
           +
Sbjct: 64  I 64

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 6e-08
 Identities = 33/187 (17%), Positives = 57/187 (30%), Gaps = 18/187 (9%)

Query: 64  VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVK 118
           V  K   V GA    G+   E LL KG  V     +L+      +      +      ++
Sbjct: 1   VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 60

Query: 119 ADVT--EGSAKLSEAIGDDSEAV---VCATGFQPGWDLFAPWKVDNFGTVNLVEAC---- 169
            DV   +        + D    +   V   G     +     +++    ++         
Sbjct: 61  CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYM 120

Query: 170 RKRGVNRFILISSILVNGAAMGQILNPAYIFLN--VFGLTLIAKLQAEQYIRKSGINYTI 227
            K+      +I ++      M     P Y      + G T  A L A   +  SG+    
Sbjct: 121 SKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAAN--LMNSGVRLNA 178

Query: 228 IRPGGLR 234
           I PG + 
Sbjct: 179 ICPGFVN 185

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN-------PSLQIVKAD 120
           K+ + G  G  G  +    L++G  +       D      + DN        + + V  D
Sbjct: 2   KLLITGGCGFLGSNLASFALSQGIDLIV----FDNLSRKGATDNLHWLSSLGNFEFVHGD 57

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGW----DLFAPWKVDNFGTVNLVEACRKRGVNR 176
           +   +           ++     G         +    ++++  GT+NL+EA R+   N 
Sbjct: 58  IRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNC 117

Query: 177 FILISS 182
            I+ SS
Sbjct: 118 NIIYSS 123

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (112), Expect = 4e-07
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGS 125
           ++ + G  G  G  + E+LL +       V  LD     +S+  ++P    V+ D++  S
Sbjct: 2   RVLILGVNGFIGNHLTERLLREDHYE---VYGLDIGSDAISRFLNHPHFHFVEGDISIHS 58

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPW 155
             +   +      +       P      P 
Sbjct: 59  EWIEYHVKKCDVVLPLVAIATPIEYTRNPL 88

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-07
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 59  EENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVK 118
            E+  ++ K +F+ GA+G +G+ +++++L +G   K  V  + + K T  ++       +
Sbjct: 7   REDFRMQNKSVFILGASGETGRVLLKEILEQGLFSK--VTLIGRRKLTFDEEAYKNVNQE 64

Query: 119 ADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFI 178
               E     + A         C    +         +VD    +   E  +  G   F 
Sbjct: 65  VVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFN 124

Query: 179 LISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG---GLRN 235
           L+SS   + ++    L                     +        Y++ RPG     R 
Sbjct: 125 LLSSKGADKSSNFLYLQVKG-------------EVEAKVEELKFDRYSVFRPGVLLCDRQ 171

Query: 236 EPPTGNIIM 244
           E   G  ++
Sbjct: 172 ESRPGEWLV 180

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (111), Expect = 7e-07
 Identities = 35/193 (18%), Positives = 57/193 (29%), Gaps = 17/193 (8%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR----DLDKAKTTLSKDNPSLQIVKADVT 122
           K + V G  G  G   V +L+  G+             D            +   + D+ 
Sbjct: 2   KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLC 61

Query: 123 EGSA--KLSEAIGDDSEAVVCATGFQPGWDLFAP--WKVDNFGTVNLVEACRKRGVNRFI 178
           +     K+ +    DS                    +  +  GTV L+E  ++  V++F+
Sbjct: 62  DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFV 121

Query: 179 LISSILVNGAAMGQILNPAYIFLNVFGLTL---IAKLQAEQYIR------KSGINYTIIR 229
             SS  V G A               G T      K   E  +       K    + I+R
Sbjct: 122 FSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILR 181

Query: 230 PGGLRNEPPTGNI 242
                   P+G I
Sbjct: 182 YFNPIGAHPSGLI 194

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 19/195 (9%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAV----------KAGVRDLDKAKTTLSKDNPSLQI 116
           +K+ V G  G  G   V +LL  G+            + G    +  +        S++ 
Sbjct: 3   EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGF-QPGWDLFAPW---KVDNFGTVNLVEACRKR 172
            + D+ +  A           AV+   G    G  +  P    +V+  GT+ L+E  +  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122

Query: 173 GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-----SGINYTI 227
           GV   +  SS  V G      L+ A+           +K   E+ IR         N  +
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVL 182

Query: 228 IRPGGLRNEPPTGNI 242
           +R         +G I
Sbjct: 183 LRYFNPTGAHASGCI 197

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL--SKDNPSLQIVKADVT 122
           + K++FV G TG  G  +   L   G  VK          +    ++    +Q    D+ 
Sbjct: 7   QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 66

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 36/211 (17%), Positives = 59/211 (27%), Gaps = 26/211 (12%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---------LSKDNPSLQIV 117
           K   + G TG  G  + E LL KG+ V   +R      T           + +   +++ 
Sbjct: 2   KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61

Query: 118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGW-----DLFAPWKVDNFGTVNLVEACRKR 172
            AD+T+ ++ L   I       V     Q               V   G + L+EA R  
Sbjct: 62  YADLTD-ASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH 120

Query: 173 GVNRFILISSILVNGAAMGQILNPAYI---FLNVFGLTLIAKLQAEQYI----RKSGINY 225
            ++    +       + M     P        +       +K  A  Y        G+  
Sbjct: 121 TIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFA 180

Query: 226 TIIRP----GGLRNEPPTGNIIMETEVRAFI 252
                       R E      I     R  +
Sbjct: 181 CNGILFNHESPRRGENFVTRKITRALGRIKV 211

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 24/189 (12%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS- 125
             + V GA+G +G+ + ++L           + L ++     K      +   D+T+   
Sbjct: 4   PTVLVTGASGRTGQIVYKKLKEGSDKFV--AKGLVRSAQGKEKIGGEADVFIGDITDADS 61

Query: 126 --------------AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK 171
                               +    +            D   P +VD  G  N ++A + 
Sbjct: 62  INPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV 121

Query: 172 RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
            GV   +++ S+                 L             EQY+  SG  YTIIR G
Sbjct: 122 AGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKA-------EQYLADSGTPYTIIRAG 174

Query: 232 GLRNEPPTG 240
           GL ++    
Sbjct: 175 GLLDKEGGV 183

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 29/192 (15%)

Query: 67  KKIFVAGATGSSGKRIVEQLL---AKGFAVKAGVRDLDK------AKTTLSKDNPSLQIV 117
             + + G +   G  +  +L    ++ F V A +RDL        A   L+    SL+ +
Sbjct: 3   TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62

Query: 118 KADVTEGSA----------KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDN-FGTVNLV 166
           + DV +  +             + +  ++   +       G D  A     N  GTV ++
Sbjct: 63  QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122

Query: 167 EAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG 222
           +A     ++RG  R ++  S+   G  MG   N  Y     F L  + +  A       G
Sbjct: 123 QAFLPDMKRRGSGRVLVTGSV---GGLMGLPFNDVYCASK-FALEGLCESLAVLL-LPFG 177

Query: 223 INYTIIRPGGLR 234
           ++ ++I  G + 
Sbjct: 178 VHLSLIECGPVH 189

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.9 bits (94), Expect = 5e-05
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR 98
          K++ +AGATG +G+ +++++L++    K    
Sbjct: 3  KRVLLAGATGLTGEHLLDRILSEPTLAKVIAP 34

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 30/207 (14%), Positives = 56/207 (27%), Gaps = 39/207 (18%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVK--AGVRDLDKAKTTLSKDNPSLQIVKADVT 122
               + V GA    G  +V+QL+         A  RD++KA    S  +  + ++   VT
Sbjct: 2   SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61

Query: 123 EGSA------KLSEAIGDDS-EAVVCATGFQPGWDLFAPWKVDNF---------GTVNLV 166
              +      K+ E +G D    ++   G    +                      V L 
Sbjct: 62  CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121

Query: 167 EAC----RKRGVNRFILISSILV---------------NGAAMGQILNPAYIFLNVFGLT 207
           +      +           S+                 N +   Q    AY         
Sbjct: 122 QKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINM 181

Query: 208 LIAKLQAEQYIRKSGINYTIIRPGGLR 234
               L  +  ++   +      PG ++
Sbjct: 182 FGRTLAVD--LKDDNVLVVNFCPGWVQ 206

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAV------KAGVRDLDKAKTTLSKDNP 112
           KI + GA G  G+ I +QL  K   V         + ++       ++  P
Sbjct: 3   KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKP 53

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAV 93
           ++ V G  G  G      L  K + V
Sbjct: 2  SRVMVIGGDGYCGWATALHLSKKNYEV 28

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 18/185 (9%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           + +++ V G  G+ G R V+   A+ + V A +  ++  + + S              + 
Sbjct: 1   EARRVLVYGGRGALGSRCVQAFRARNWWV-ASIDVVENEEASASVIVKMTDSFTEQADQV 59

Query: 125 SAKLSEAIGDDS-EAVVCATGFQPGWDLFAPW---------KVDNFGTVNLVEA--CRKR 172
           +A++ + +GD   +A++C  G   G +  +           K   + +           +
Sbjct: 60  TAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLK 119

Query: 173 GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY-IRKSGINYTIIRPG 231
                 L  +        G I            +  + +  A +     SG     + P 
Sbjct: 120 EGGLLTLAGAKAALDGTPGMIGYGMAK----GAVHQLCQSLAGKNSGMPSGAAAIAVLPV 175

Query: 232 GLRNE 236
            L   
Sbjct: 176 TLDTP 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.97
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.96
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.95
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.95
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.94
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.94
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.94
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.94
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.94
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.93
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.93
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.93
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.93
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.93
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.93
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.93
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.93
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.93
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.93
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.93
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.92
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.92
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.92
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.92
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.92
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.92
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.92
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.92
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.92
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.92
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.92
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.92
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.92
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.92
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.92
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.92
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.91
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.91
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.91
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.91
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.91
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.91
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.91
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.91
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.91
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.91
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.91
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.91
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.91
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.9
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.9
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.9
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.9
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.9
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.9
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.89
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.89
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.89
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.89
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.89
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.89
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.88
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.88
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.88
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.88
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.88
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.87
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.87
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.86
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.86
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.86
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.86
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.86
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.86
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.85
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.85
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.85
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.85
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.85
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.84
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.83
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.81
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.81
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.8
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.78
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.77
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.75
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.75
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.74
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.73
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.7
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.7
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.7
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.67
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.63
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.61
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.51
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.66
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.59
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.49
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.45
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.42
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.31
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.28
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.25
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.19
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.18
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.04
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.04
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.04
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.03
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.02
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.01
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.0
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.99
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.98
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.96
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.94
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.94
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.94
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.93
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.92
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.91
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.9
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.88
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.88
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.87
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.86
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.83
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.81
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.8
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.8
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.79
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.77
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.77
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.76
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.73
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.71
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.7
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.7
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.7
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.69
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.67
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.63
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.63
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.53
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.51
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.49
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.44
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.43
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.43
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.39
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.39
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.34
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.29
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.27
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.24
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.21
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.19
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.18
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.15
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.13
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.13
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.12
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	97.11
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.07
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.05
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.0
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.94
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.93
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.9
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.86
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.84
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.82
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.8
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.75
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.74
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.7
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.64
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.59
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.58
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.57
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.54
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.54
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.42
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.37
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.37
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.36
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.34
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.33
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.25
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.24
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.22
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.22
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.19
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.19
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.19
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.18
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.17
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.16
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.15
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.14
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.09
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.06
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.05
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.04
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.04
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.03
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.99
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.94
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.93
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.87
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.78
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.78
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.71
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.68
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.66
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.66
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.64
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.64
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.63
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.61
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.57
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.56
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.5
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.49
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.49
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.45
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.4
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	95.37
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.37
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.3
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.26
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.19
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.1
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	95.06
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.98
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	94.9
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.8
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.78
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.73
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.7
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.51
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.36
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.33
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.28
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.25
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	94.2
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.19
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.18
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.98
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.98
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.77
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.66
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.5
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.35
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	93.17
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.01
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.95
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.81
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	92.69
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	92.56
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.52
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.5
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.41
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.4
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.32
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	92.22
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.2
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	92.16
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	92.04
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.04
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.01
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.88
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	91.75
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	91.71
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	91.71
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.66
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	91.33
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.27
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	90.98
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.72
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.64
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	90.62
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.62
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.46
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	90.41
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	90.19
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	90.18
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	89.88
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.8
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	89.73
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	89.55
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	89.04
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.99
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	88.55
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	88.52
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	88.46
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	88.12
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	87.91
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	87.87
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.8
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	87.62
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	87.31
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.29
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	87.17
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	86.99
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.95
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	86.82
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.58
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	86.14
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	86.06
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.89
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.85
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	85.76
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	85.56
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.56
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.56
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	85.5
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	85.5
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.22
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	85.13
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	85.08
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	84.99
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	84.89
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	84.85
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	84.26
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.91
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	83.86
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	83.56
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.44
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	83.18
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	83.05
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	82.73
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	82.65
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	82.61
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	82.57
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	82.22
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	82.15
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	82.04
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.82
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	81.69
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	81.6
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	81.11
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	80.95
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	80.74
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	80.68
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.46
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	80.17
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	80.16
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	80.15

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-29  Score=198.95  Aligned_cols=166  Identities=23%  Similarity=0.367  Sum_probs=139.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      |.|++|+||||||+||++++++|+++|++|++++|++++.+..   ...+++++.+|++| .+++.+++.+ +|+|||++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~~~~~~gD~~d-~~~l~~al~~-~d~vi~~~   75 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE---GPRPAHVVVGDVLQ-AADVDKTVAG-QDAVIVLL   75 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS---SCCCSEEEESCTTS-HHHHHHHHTT-CSEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc---cccccccccccccc-hhhHHHHhcC-CCEEEEEe
Confidence            4689999999999999999999999999999999998876543   23679999999999 8999999999 99999999


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCC
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI  223 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi  223 (252)
                      |.....   ...+++..++.++++++++++++|||++||.+++......        ......|...|..+|+++++.++
T Consensus        76 g~~~~~---~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~--------~~~~~~~~~~~~~~e~~l~~~~~  144 (205)
T d1hdoa_          76 GTRNDL---SPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV--------PPRLQAVTDDHIRMHKVLRESGL  144 (205)
T ss_dssp             CCTTCC---SCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS--------CGGGHHHHHHHHHHHHHHHHTCS
T ss_pred             ccCCch---hhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCccc--------cccccccchHHHHHHHHHHhcCC
Confidence            875433   3346788999999999999999999999998776543221        12346678899999999999999


Q ss_pred             cEEEEeCCcccCCCCCCceEee
Q 025456          224 NYTIIRPGGLRNEPPTGNIIME  245 (252)
Q Consensus       224 ~~~~lrPg~i~~~~~~~~~~~~  245 (252)
                      +|++|||+.+.+....+.+.+.
T Consensus       145 ~~tiirp~~~~~~~~~~~~~~~  166 (205)
T d1hdoa_         145 KYVAVMPPHIGDQPLTGAYTVT  166 (205)
T ss_dssp             EEEEECCSEEECCCCCSCCEEE
T ss_pred             ceEEEecceecCCCCcccEEEe
Confidence            9999999999988777665543

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=9.6e-30  Score=219.09  Aligned_cols=170  Identities=21%  Similarity=0.179  Sum_probs=135.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-----hhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC-CCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-----KTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-DSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-----~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d  137 (252)
                      |+|||||||||||++|+++|+++|++|++++|..+..     +...   .....+++++++|++| .+++.+.+.+ ++|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d   80 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSD-TSNLTRILREVQPD   80 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSC-HHHHHHHHHHHCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCC-HHHHHHHHhccCCC
Confidence            7899999999999999999999999999999965321     1111   1134689999999999 8999999986 479


Q ss_pred             EEEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCC---CEEEEEccceeeccCCCCCCCcchhccchhhHHHHH
Q 025456          138 AVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       138 ~vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~---~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~s  210 (252)
                      +|||+|+...    ..++..++++|+.||.+++++|++.++   .+|||+||..+||.....+.+|.. +.+|.+.|+.+
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~-~~~P~~~Y~~s  159 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETT-PFYPRSPYAVA  159 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTS-CCCCCSHHHHH
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCC-CCCCCChHHHH
Confidence            9999998754    234455789999999999999998765   379999999999876655665543 44677899999


Q ss_pred             HHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          211 KLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       211 K~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      |.++|++++    +++++++++||++++||..
T Consensus       160 K~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~  191 (357)
T d1db3a_         160 KLYAYWITVNYRESYGMYACNGILFNHESPRR  191 (357)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence            999998775    3689999999999999853

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-28  Score=210.70  Aligned_cols=172  Identities=20%  Similarity=0.223  Sum_probs=139.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---c-ccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---L-SKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~-~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~  141 (252)
                      |+||||||+||||++|+++|+++|++|++++|........   . .....+++++++|++| .+.+.+++.. ++|+|||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~~~~d~ViH   79 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-EALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC-HHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC-HHHHHHHHhccCCCEEEE
Confidence            5799999999999999999999999999998643221111   1 0123589999999999 8999999873 3999999


Q ss_pred             cCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHH
Q 025456          142 ATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (252)
Q Consensus       142 ~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (252)
                      +|+...    ..++...+++|+.|+.+++++|++.+++++|++||..+|+.....+..+.....++...|+.+|.++|++
T Consensus        80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~  159 (338)
T d1udca_          80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQI  159 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHHH
T ss_pred             CCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCcchHHHHHhhhhHH
Confidence            998654    1245577899999999999999999999999999999997765555445555567788999999999988


Q ss_pred             HHH-----cCCcEEEEeCCcccCCCCC
Q 025456          218 IRK-----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       218 ~~~-----~gi~~~~lrPg~i~~~~~~  239 (252)
                      +..     .+++++++||++++|+...
T Consensus       160 ~~~~~~~~~~~~~~ilR~~~v~G~~~~  186 (338)
T d1udca_         160 LTDLQKAQPDWSIALLRYFNPVGAHPS  186 (338)
T ss_dssp             HHHHHHHSTTCEEEEEEECEEECCCTT
T ss_pred             HHHHHhhccCCeEEEEeeccEEeccCC
Confidence            753     4899999999999998654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.3e-28  Score=205.73  Aligned_cols=165  Identities=17%  Similarity=0.230  Sum_probs=128.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      |+||||||+||||++|+++|+++|++|++++|......+.+..  ...++++...|+.+      .++.+ +|+|||+|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~-~d~VihlAa   74 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE------PLYIE-VDQIYHLAS   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTS------CCCCC-CSEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHH------HHHcC-CCEEEECcc
Confidence            7999999999999999999999999999998743322221111  23456666655544      34456 999999998


Q ss_pred             CCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcch----hccchhhHHHHHHHHHHH
Q 025456          145 FQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKLQAEQ  216 (252)
Q Consensus       145 ~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~----~~~~~~~~y~~sK~~~e~  216 (252)
                      ...    ..++.+.+++|+.|+.+++++|++.++ ++||+||..+|+.....+..+..    .+.++...|+.+|.++|.
T Consensus        75 ~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~  153 (312)
T d2b69a1          75 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET  153 (312)
T ss_dssp             CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHH
T ss_pred             cCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHH
Confidence            654    245566789999999999999999987 89999999999876554444322    345678899999999998


Q ss_pred             HHH----HcCCcEEEEeCCcccCCCCC
Q 025456          217 YIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       217 ~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      +++    .+|++++++||++++||...
T Consensus       154 ~~~~~~~~~~~~~~~lR~~~vyGp~~~  180 (312)
T d2b69a1         154 MCYAYMKQEGVEVRVARIFNTFGPRMH  180 (312)
T ss_dssp             HHHHHHHHHCCCEEEEEECCEECTTCC
T ss_pred             HHHHHHHHhCCcEEEEEeeeEECCCCC
Confidence            875    46999999999999998653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=1e-26  Score=200.05  Aligned_cols=172  Identities=18%  Similarity=0.088  Sum_probs=138.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      +.++|+||||||+||||++|+++|+++|++|+++++........   .....++..+|+.+ .+.+.+.+.+ +|+|||+
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~D~~~-~~~~~~~~~~-~d~Vih~   86 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE---DMFCDEFHLVDLRV-MENCLKVTEG-VDHVFNL   86 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG---GGTCSEEEECCTTS-HHHHHHHHTT-CSEEEEC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh---hcccCcEEEeechh-HHHHHHHhhc-CCeEeec
Confidence            34688999999999999999999999999999998764432111   12456888899999 8888888888 9999999


Q ss_pred             CCCCC-----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCc------chhccchhhHHHHHH
Q 025456          143 TGFQP-----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNP------AYIFLNVFGLTLIAK  211 (252)
Q Consensus       143 ag~~~-----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~------~~~~~~~~~~y~~sK  211 (252)
                      |+...     ..++...+.+|+.++.+++++|++.++++||++||..+|+.....+..+      ...+.++...|+.+|
T Consensus        87 a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK  166 (363)
T d2c5aa1          87 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEK  166 (363)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHH
Confidence            97654     2344556789999999999999999999999999999998665433222      233456678899999


Q ss_pred             HHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          212 LQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       212 ~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      .++|++++    .+|++++++||++++|+...
T Consensus       167 ~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~  198 (363)
T d2c5aa1         167 LATEELCKHYNKDFGIECRIGRFHNIYGPFGT  198 (363)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence            99998775    46999999999999998653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-27  Score=201.82  Aligned_cols=170  Identities=18%  Similarity=0.127  Sum_probs=134.5

Q ss_pred             cEE-EEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-----hhccc----cCCCCeEEEEeeCCCChHHHHHHHcC-C
Q 025456           67 KKI-FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-----KTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD-D  135 (252)
Q Consensus        67 ~~v-lVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-----~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~-~  135 (252)
                      |+| ||||||||||++|+++|+++|++|++++|..+..     +....    ....+++++.+|++| .+.+.+++.+ +
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~   79 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTD-STCLVKIINEVK   79 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTC-HHHHHHHHHHHC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCC-chhhHHHHhhcc
Confidence            467 9999999999999999999999999999975421     11111    123578999999999 8888888765 5


Q ss_pred             CcEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCC---CEEEEEccceeeccCCCCCCCcchhccchhhHHH
Q 025456          136 SEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (252)
Q Consensus       136 ~d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~---~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~  208 (252)
                      +++++|+++....    .+....+++|+.|+.+++++|++.++   .+||++||..+||.....+.+|.. +.+|.+.|+
T Consensus        80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~-~~~P~~~Yg  158 (347)
T d1t2aa_          80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETT-PFYPRSPYG  158 (347)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTS-CCCCCSHHH
T ss_pred             cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCC-CCCCCCHHH
Confidence            7899999876541    23445568999999999999998875   489999999999976666665543 457788999


Q ss_pred             HHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          209 IAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       209 ~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      .+|.++|+++.    +++++++++||+++|||..
T Consensus       159 ~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~  192 (347)
T d1t2aa_         159 AAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR  192 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCC
Confidence            99999998774    4699999999999999853

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.9e-27  Score=201.03  Aligned_cols=172  Identities=18%  Similarity=0.219  Sum_probs=134.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh----hhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA----KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~  141 (252)
                      |.|||||||||||++|+++|+++|++|+++++.....    .........+++++++|++| .+.+.+++.. ++|+|||
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~~d~Vih   80 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD-RKGLEKVFKEYKIDSVIH   80 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTC-HHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCC-HHHHHHHHhccCCCEEEE
Confidence            6799999999999999999999999999987532211    11111123578999999999 8888888763 3999999


Q ss_pred             cCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCC---cchhccchhhHHHHHHHHH
Q 025456          142 ATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILN---PAYIFLNVFGLTLIAKLQA  214 (252)
Q Consensus       142 ~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~---~~~~~~~~~~~y~~sK~~~  214 (252)
                      +|+...    ..++.....+|+.|+.+++++|++.++++||++||..+||.....+..   ++..+.++.+.|+.+|.++
T Consensus        81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~  160 (347)
T d1z45a2          81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAI  160 (347)
T ss_dssp             CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHHH
T ss_pred             ccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHHHHH
Confidence            998754    123445678999999999999999999999999999999865432211   1233456678899999999


Q ss_pred             HHHHHH------cCCcEEEEeCCcccCCCCC
Q 025456          215 EQYIRK------SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       215 e~~~~~------~gi~~~~lrPg~i~~~~~~  239 (252)
                      |++++.      .+++++++||++++|+...
T Consensus       161 E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~  191 (347)
T d1z45a2         161 ENILNDLYNSDKKSWKFAILRYFNPIGAHPS  191 (347)
T ss_dssp             HHHHHHHHHHSTTSCEEEEEEECEEECCCTT
T ss_pred             HHHHHHHHHhhccCCcEEEEeecceEeecCC
Confidence            987753      4799999999999987543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1.2e-26  Score=198.02  Aligned_cols=172  Identities=16%  Similarity=0.133  Sum_probs=140.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh----h---hhccc-cCCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----A---KTTLS-KDNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~----~---~~~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      +.|+|||||||||||++|+++|+++|++|++++|....    .   ..... ....+++++.+|+.| .......... .
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d-~~~~~~~~~~-~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRN-LDDCNNACAG-V   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTS-HHHHHHHHTT-C
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccc-cccccccccc-c
Confidence            46899999999999999999999999999999873321    1   11111 123578999999999 7777777777 9


Q ss_pred             cEEEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHH
Q 025456          137 EAVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKL  212 (252)
Q Consensus       137 d~vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~  212 (252)
                      +.++|+++...    ..++...+++|+.|+.+++++|++.++++||++||..+||.....+.+|+ .+.++.+.|+.+|.
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-~~~~p~~~Y~~sK~  171 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-TIGKPLSPYAVTKY  171 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-CCCCCCSHHHHHHH
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCC-CCCCCCCcchHHHH
Confidence            99999987643    23455678999999999999999999999999999999998766666654 45678889999999


Q ss_pred             HHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          213 QAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       213 ~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ++|++++    ..+++++++||++++|+...
T Consensus       172 ~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         172 VNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            9998775    45899999999999998653

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.94  E-value=7.4e-27  Score=201.21  Aligned_cols=171  Identities=19%  Similarity=0.156  Sum_probs=132.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh--hcccc--CCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--TTLSK--DNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~  141 (252)
                      |+||||||+||||++|+++|++.|++|++..++.....  ..+..  ...+++++++|++| .+.+.+++.+ ++|+|||
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD-SAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC-HHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCC-HHHHHHHHHhCCCCEEEE
Confidence            58999999999999999999999998655444322111  11111  34689999999999 8888888875 5899999


Q ss_pred             cCCCCC----CCCCCCcceehHHHHHHHHHHHHhcC---------CCEEEEEccceeeccCCCCCC---------Ccchh
Q 025456          142 ATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRG---------VNRFILISSILVNGAAMGQIL---------NPAYI  199 (252)
Q Consensus       142 ~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~---------~~~~v~~SS~~v~~~~~~~~~---------~~~~~  199 (252)
                      +|+...    ..++..++++|+.|+.+++++|++.+         +++||++||..+||.....+.         .....
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~  159 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT  159 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCC
Confidence            998654    23566788999999999999997754         458999999999986543221         12234


Q ss_pred             ccchhhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      +.++.+.|+.+|.++|.+++    +++++++++||++++||..
T Consensus       160 ~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~  202 (361)
T d1kewa_         160 AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH  202 (361)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCC
Confidence            45677889999999998875    4699999999999999864

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.93  E-value=2.2e-26  Score=194.93  Aligned_cols=170  Identities=18%  Similarity=0.162  Sum_probs=134.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEE------eecCchh--hhhc-cccCCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKA------GVRDLDK--AKTT-LSKDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~------~~r~~~~--~~~~-~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      |+|+|||||||||++|+++|+++|++|..      +++....  .... ......+++++.+|+.+ .......... +|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~-~d   78 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRD-AGLLARELRG-VD   78 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTC-HHHHHHHTTT-CC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEecccc-chhhhccccc-cc
Confidence            57999999999999999999999986543      3322111  1111 11134689999999999 7777777777 99


Q ss_pred             EEEEcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHH
Q 025456          138 AVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ  213 (252)
Q Consensus       138 ~vi~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~  213 (252)
                      .|+|+|+...    ..+....+++|+.|+.+++++|++.++++||++||..+|+.....+.++. .+.++.+.|+.+|.+
T Consensus        79 ~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~-~~~~p~~~Y~~sK~~  157 (322)
T d1r6da_          79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-SPLEPNSPYAASKAG  157 (322)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-SCCCCCSHHHHHHHH
T ss_pred             eEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCC-CCCCCCCHHHHHHHH
Confidence            9999997654    23456678899999999999999999999999999999998766555554 345677889999999


Q ss_pred             HHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          214 AEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       214 ~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                      +|.+++    +++++++++||+++||+...
T Consensus       158 ~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~  187 (322)
T d1r6da_         158 SDLVARAYHRTYGLDVRITRCCNNYGPYQH  187 (322)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECEEECTTCC
T ss_pred             HHHHHHHHHHHhCCCEEEEEeeeEECcCCC
Confidence            998774    46999999999999998654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.7e-26  Score=193.51  Aligned_cols=155  Identities=17%  Similarity=0.172  Sum_probs=124.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag  144 (252)
                      .|+|||||||||||++|+++|+++|+.|+++++..                 +.|++| .+.+.+.+.. ++|.|+|+|+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~d~v~~~a~   63 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------ELNLLD-SRAVHDFFASERIDQVYLAAA   63 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------TCCTTC-HHHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-----------------hccccC-HHHHHHHHhhcCCCEEEEcch
Confidence            47999999999999999999999999988765431                 158888 7888887765 5899999987


Q ss_pred             CCCC-----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchh----ccchhhHHHHHHHHHH
Q 025456          145 FQPG-----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI----FLNVFGLTLIAKLQAE  215 (252)
Q Consensus       145 ~~~~-----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~----~~~~~~~y~~sK~~~e  215 (252)
                      ....     .+..+.+++|+.|+.+++++|++.++++|||+||.++||.....+..+...    +..+...|+.+|.++|
T Consensus        64 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E  143 (315)
T d1e6ua_          64 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGI  143 (315)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHH
T ss_pred             hccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHH
Confidence            5432     234455789999999999999999999999999999998766555544321    2233467999999999


Q ss_pred             HHHH----HcCCcEEEEeCCcccCCCC
Q 025456          216 QYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       216 ~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      ++++    +.|++++++||++++||..
T Consensus       144 ~~~~~~~~~~gl~~~ilR~~~vyGp~~  170 (315)
T d1e6ua_         144 KLCESYNRQYGRDYRSVMPTNLYGPHD  170 (315)
T ss_dssp             HHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred             HHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            8775    4699999999999999864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=2e-26  Score=187.98  Aligned_cols=163  Identities=21%  Similarity=0.186  Sum_probs=130.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      .+++|+++||||+++||++++++|+++|++|++.+|++++.++...+...++.++++|++| ++++++.++.      ++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   81 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGL   81 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCC-HHHHHHHHHHHHHHhCCC
Confidence            4679999999999999999999999999999999999988766554445678999999999 7666655532      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |++|||||....        .+|++.+++|+.+++++++.+    ++.+-++||++||...+..            ...+
T Consensus        82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~------------~~~~  149 (244)
T d1nffa_          82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAG------------TVAC  149 (244)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------CTTB
T ss_pred             eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccc------------cccc
Confidence            999999997653        235567899999998888765    4555579999999854211            1235


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..|..+|++.+.+.+       ++||++++|.||.+.+++.
T Consensus       150 ~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~  190 (244)
T d1nffa_         150 HGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMT  190 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGG
T ss_pred             cchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhH
Confidence            789999999987765       4699999999999998764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.93  E-value=2.7e-26  Score=188.21  Aligned_cols=162  Identities=15%  Similarity=0.122  Sum_probs=130.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+.++.++...+...++.++++|++| +++++++++.      ++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   80 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCC-HHHHHHHHHHHHHHcCCc
Confidence            5689999999999999999999999999999999999888776555455678999999999 7666655431      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |++|||||+...        .+|+..+++|+.+++++++++    ++.+-++||++||...+..            ....
T Consensus        81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~------------~~~~  148 (254)
T d1hdca_          81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMG------------LALT  148 (254)
T ss_dssp             CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------CTTC
T ss_pred             cEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhccc------------ccch
Confidence            999999997653        235567899999998888876    4556679999999854321            1234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|..+|++.+.+.+       ++||++++|.||.+.+++
T Consensus       149 ~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~  188 (254)
T d1hdca_         149 SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM  188 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc
Confidence            789999999987765       468999999999998763

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.93  E-value=5.9e-26  Score=194.17  Aligned_cols=171  Identities=20%  Similarity=0.151  Sum_probs=132.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch--h-hhhcc-ccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--K-AKTTL-SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~--~-~~~~~-~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      +||+|||||||||||++|+++|+++|++|.+++++..  . ....+ .....+++++.+|+.| .+.+.+++.+ .|.|+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d-~~~~~~~~~~-~~~v~   78 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD-AELVDKLAAK-ADAIV   78 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTC-HHHHHHHHTT-CSEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCC-HHHHHHHHhh-hhhhh
Confidence            4799999999999999999999999987666655321  1 11111 1134689999999999 8999999998 99999


Q ss_pred             EcCCCCC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCC-----------CCCcchhccchhh
Q 025456          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ-----------ILNPAYIFLNVFG  205 (252)
Q Consensus       141 ~~ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~-----------~~~~~~~~~~~~~  205 (252)
                      |+|+...    ..++.+.+++|+.|+.++++++++.+. ++|++||..+||.....           .......+.++.+
T Consensus        79 ~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s  157 (346)
T d1oc2a_          79 HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSS  157 (346)
T ss_dssp             ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCS
T ss_pred             hhhhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCCCCCCCC
Confidence            9998654    245667889999999999999999986 89999999999753210           0111123456678


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       206 ~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      .|+.+|.++|.+++    .++++++++||++++||..
T Consensus       158 ~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         158 PYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            89999999998775    4699999999999999754

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.93  E-value=4.6e-26  Score=187.28  Aligned_cols=162  Identities=18%  Similarity=0.250  Sum_probs=129.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+.++.++...+...++..+.+|++| +++++++++.      ++
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTD-QASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCC-HHHHHHHHHHHHHHhCCc
Confidence            4679999999999999999999999999999999999887776554445688999999999 7666655532      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----Hh-cCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RK-RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~-~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |++|||||....        .+|+..+++|+.|++++++++    .+ ...++||++||...+..            ...
T Consensus        81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~------------~~~  148 (256)
T d1k2wa_          81 DILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRG------------EAL  148 (256)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------CTT
T ss_pred             cEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccc------------ccc
Confidence            999999997553        235566899999999888764    22 23469999999853211            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +..|..+|++.+.+.+       ++||++++|.||.+.+++
T Consensus       149 ~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~  189 (256)
T d1k2wa_         149 VGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEH  189 (256)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTT
T ss_pred             ccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchh
Confidence            5789999999987764       469999999999999885

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.8e-26  Score=188.26  Aligned_cols=162  Identities=19%  Similarity=0.199  Sum_probs=129.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+++..++.......+...+.+|++| .+++++.++.      ++
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTD-PASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHTCSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC-HHHhhhhhhhhhcccCCc
Confidence            3579999999999999999999999999999999999887765443334578889999999 7666655532      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |++|||||....        .+|+..+++|+.+++++++++    ++.+-++||++||......            ....
T Consensus        80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~------------~~~~  147 (243)
T d1q7ba_          80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMG------------NGGQ  147 (243)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC------------CTTC
T ss_pred             ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCC------------CCCC
Confidence            999999997653        245566899999988888876    4556679999999854321            1235


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|..+|++.+.+.+       ++||++++|.||.+.+++
T Consensus       148 ~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~  187 (243)
T d1q7ba_         148 ANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDM  187 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechh
Confidence            789999999987765       469999999999998864

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-26  Score=185.97  Aligned_cols=158  Identities=20%  Similarity=0.255  Sum_probs=130.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .|++++|+|||||||||++|+++|+++|+  +|++++|++......   ....+....+|+.+ .+++.+.+.+ +|+||
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~---~~~~i~~~~~D~~~-~~~~~~~~~~-~d~vi   85 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE---AYKNVNQEVVDFEK-LDDYASAFQG-HDVGF   85 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG---GGGGCEEEECCGGG-GGGGGGGGSS-CSEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc---ccceeeeeeecccc-cccccccccc-ccccc
Confidence            46789999999999999999999999995  899999987543322   22567888899988 7889999999 99999


Q ss_pred             EcCCCCC-CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH
Q 025456          141 CATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (252)
Q Consensus       141 ~~ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (252)
                      |++|... ..+...+.++|+.++.+++++|++.++++||++||..++..              +.+.|+.+|..+|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~--------------~~~~Y~~~K~~~E~~l~  151 (232)
T d2bkaa1          86 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS--------------SNFLYLQVKGEVEAKVE  151 (232)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------CSSHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhcccccceeeecccccCccccccCCccccccC--------------ccchhHHHHHHhhhccc
Confidence            9998653 22344567899999999999999999999999999866532              13568999999999999


Q ss_pred             HcCCc-EEEEeCCcccCCCCC
Q 025456          220 KSGIN-YTIIRPGGLRNEPPT  239 (252)
Q Consensus       220 ~~gi~-~~~lrPg~i~~~~~~  239 (252)
                      +.+++ ++++|||.++|+...
T Consensus       152 ~~~~~~~~IlRP~~i~G~~~~  172 (232)
T d2bkaa1         152 ELKFDRYSVFRPGVLLCDRQE  172 (232)
T ss_dssp             TTCCSEEEEEECCEEECTTGG
T ss_pred             cccccceEEecCceeecCCCc
Confidence            88875 999999999998543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.93  E-value=9.1e-26  Score=184.55  Aligned_cols=163  Identities=17%  Similarity=0.230  Sum_probs=124.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hhccccCCCCeEEEEeeCCCChHHHHHHHcC------C
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~  135 (252)
                      ++++|+++||||+++||+++++.|+++|++|++.+|++.+. +..+.....++..+++|++| .++++++++.      +
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999999999999986433 33333355689999999999 7666655431      4


Q ss_pred             CcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       136 ~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      +|++|||||+...        ++|+..+++|+.+++++.+++    ++.+-+++|++||......            ...
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~------------~~~  148 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLK------------IEA  148 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC------------CSS
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhccc------------Ccc
Confidence            9999999997653        246677899999988888776    5566679999999853211            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...|..+|++.+.+.+       ++||++++|.||.+.+++.
T Consensus       149 ~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~  190 (247)
T d2ew8a1         149 YTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATT  190 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-----
T ss_pred             cccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccc
Confidence            4779999999887664       4689999999999998764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=192.07  Aligned_cols=173  Identities=20%  Similarity=0.204  Sum_probs=136.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh----------hhhccccCCCCeEEEEeeCCCChHHHHHHHcC-
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----------AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~----------~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-  134 (252)
                      .|+|||||||||||++|+++|+++|++|+++++....          .+........++.++++|++| .+.+.+.+.+ 
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~~   80 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILD-QGALQRLFKKY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccc-ccccccccccc
Confidence            4799999999999999999999999999998752111          111111134679999999999 8888887765 


Q ss_pred             CCcEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHH
Q 025456          135 DSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (252)
Q Consensus       135 ~~d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~s  210 (252)
                      ++++++|+|+....    .++...+++|+.|+.++++++++.++++|+++||..+|+...............+...|+.+
T Consensus        81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~  160 (346)
T d1ek6a_          81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKS  160 (346)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHH
T ss_pred             ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccccccccCChHHHH
Confidence            47789999987542    24556789999999999999999999999999999999876544444333344556789999


Q ss_pred             HHHHHHHHHH-----cCCcEEEEeCCcccCCCCC
Q 025456          211 KLQAEQYIRK-----SGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       211 K~~~e~~~~~-----~gi~~~~lrPg~i~~~~~~  239 (252)
                      |..+|+.+++     .+++++++||+.++|+...
T Consensus       161 k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~  194 (346)
T d1ek6a_         161 KFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHAS  194 (346)
T ss_dssp             HHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTT
T ss_pred             HHHHHHHHHHHHHhccCCceEEEeecceeccCCC
Confidence            9999977653     4899999999999998643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.3e-25  Score=182.96  Aligned_cols=161  Identities=14%  Similarity=0.128  Sum_probs=129.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi  140 (252)
                      +++||+++||||+++||++++++|+++|++|++.+|+.++.++... ...++..+.+|++| .++++++++.  ++|++|
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~-~~~~~~~~~~Dv~~-~~~v~~~~~~~g~iDilV   79 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK-ECPGIEPVCVDLGD-WDATEKALGGIGPVDLLV   79 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HSTTCEEEECCTTC-HHHHHHHHTTCCCCSEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hcCCCeEEEEeCCC-HHHHHHHHHHcCCCeEEE
Confidence            4679999999999999999999999999999999999887765443 23468899999999 8888888875  699999


Q ss_pred             EcCCCCCC--------CCCCCcceehHHHHHHHHHHHH-----hcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~-----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||||+...        .+|+..+++|+.++.++.+.+.     +.+.+++|++||...+..            ......|
T Consensus        80 nnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~------------~~~~~~Y  147 (242)
T d1cyda_          80 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT------------FPNLITY  147 (242)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------CTTBHHH
T ss_pred             ECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhcccc------------CCccccc
Confidence            99997553        2355668999999999887652     223469999999853221            1235789


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+|++.+.+.+       ++||++++|.||.+.++.
T Consensus       148 ~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~  184 (242)
T d1cyda_         148 SSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDM  184 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHH
T ss_pred             cchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHH
Confidence            999999988765       368999999999998864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=2e-25  Score=182.89  Aligned_cols=164  Identities=20%  Similarity=0.277  Sum_probs=127.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc----ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+.++.++..    .....++..+++|++| +++++++++.    
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKEK   80 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999987765422    1124578899999999 6666655432    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|++|||||+...        .+|+..+++|+.+++++.+++    ++.+-+++|++||......           +
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~-----------~  149 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV-----------T  149 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC-----------C
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccc-----------c
Confidence              49999999997553        245567899999998888876    4556679999998642110           1


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...+..|..+|++.+.+.+       ++||++++|.||.+.+++.
T Consensus       150 ~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~  194 (251)
T d1vl8a_         150 MPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMT  194 (251)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTT
T ss_pred             CccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHH
Confidence            1224789999999987765       4699999999999999864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=181.69  Aligned_cols=161  Identities=15%  Similarity=0.162  Sum_probs=129.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi  140 (252)
                      .++||+++||||+++||++++++|+++|++|++.+|+.+++++... ...++..+.+|++| .++++++++.  ++|++|
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~-~~~~~~~~~~Dv~d-~~~v~~~~~~~g~iDilV   81 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR-ECPGIEPVCVDLGD-WEATERALGSVGPVDLLV   81 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HSTTCEEEECCTTC-HHHHHHHHTTCCCCCEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH-hcCCCeEEEEeCCC-HHHHHHHHHHhCCceEEE
Confidence            4689999999999999999999999999999999999887765543 23468899999999 8888888765  699999


Q ss_pred             EcCCCCCC--------CCCCCcceehHHHHHHHHHHHH-----hcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~-----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||||....        .+|+..+++|+.+++++.+.+.     +.+.+++|++||......            ......|
T Consensus        82 nnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~------------~~~~~~Y  149 (244)
T d1pr9a_          82 NNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA------------VTNHSVY  149 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------CTTBHHH
T ss_pred             eccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccc------------ccchhhh
Confidence            99997653        2455678999999888877652     334579999999853211            1234779


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+|++.+.+.+       ++||++++|.||.+.++.
T Consensus       150 ~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~  186 (244)
T d1pr9a_         150 CSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSM  186 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHH
T ss_pred             hhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChH
Confidence            999999987765       368999999999998874

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.92  E-value=3e-25  Score=182.51  Aligned_cols=161  Identities=14%  Similarity=0.163  Sum_probs=126.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc-----cCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-----KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+++||++++++|+++|++|++.+|+.++.++...     ....++..+++|++| +++++++++.    
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC-HHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999876653221     134578899999999 7666655432    


Q ss_pred             --CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 --DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 --~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        ++|++|||||+...         ++|+..+++|+.+++++.+++    ++.+-++||++||......           
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~-----------  149 (258)
T d1iy8a_          81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRG-----------  149 (258)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSB-----------
T ss_pred             hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccC-----------
Confidence              49999999996531         245567899999999888876    4556679999999853211           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       ......|..+|++.+.+.+       ++||++++|.||.+.|++
T Consensus       150 -~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~  193 (258)
T d1iy8a_         150 -IGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPM  193 (258)
T ss_dssp             -CSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHH
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHH
Confidence             1235789999999887664       469999999999998864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-25  Score=182.76  Aligned_cols=160  Identities=19%  Similarity=0.236  Sum_probs=126.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      .++||+++||||+++||++++++|+++|++|++.+|+.+..++... ...++.++.+|++| .+++++.++.      ++
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~i   80 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ-ELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRL   80 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hcCCCeEEEccCCC-HHHHHHHHHHHHHhcCCC
Confidence            4579999999999999999999999999999999999887765443 23568899999999 7666655532      49


Q ss_pred             cEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccch
Q 025456          137 EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (252)
Q Consensus       137 d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~  203 (252)
                      |++|||||....         .+|+..+++|+.+++++++++    ++.+ +++|++||......            ...
T Consensus        81 DilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~isS~~~~~~------------~~~  147 (250)
T d1ydea1          81 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIG------------QAQ  147 (250)
T ss_dssp             CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHC------------CTT
T ss_pred             CEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCccccccccccc------------ccC
Confidence            999999996431         235566899999998888876    4444 69999999854321            223


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...|..+|++.+.+.+       ++||++++|.||.+.|++
T Consensus       148 ~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~  188 (250)
T d1ydea1         148 AVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPL  188 (250)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHH
T ss_pred             cchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChh
Confidence            5789999999987764       469999999999998864

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.92  E-value=1.6e-25  Score=183.47  Aligned_cols=164  Identities=16%  Similarity=0.118  Sum_probs=127.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .++++|+++||||+++||++++++|+++|++|++.+|+.+..++.   +.....++..+.+|++| ++++.+.++.    
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~   84 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTE   84 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHh
Confidence            346799999999999999999999999999999999998776542   23344678999999999 7766665542    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|++|||||....        .+|+..+++|+.+++++++++    ++.+-++||++||......            
T Consensus        85 ~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~------------  152 (251)
T d2c07a1          85 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTG------------  152 (251)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC------------
T ss_pred             cCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCC------------
Confidence              59999999997542        245566889999988888765    5556679999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ......|..+|++.+.+.+       ++||++++|.||.+.+++.
T Consensus       153 ~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~  197 (251)
T d2c07a1         153 NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMT  197 (251)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccc
Confidence            1234789999999987765       4699999999999999864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=2.3e-25  Score=183.27  Aligned_cols=165  Identities=19%  Similarity=0.198  Sum_probs=121.3

Q ss_pred             cccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHH-----
Q 025456           61 NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAI-----  132 (252)
Q Consensus        61 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~-----  132 (252)
                      +.++++|+++||||+++||++++++|+++|++|++++|+.++.++..   .....++..+.+|++| .+++++.+     
T Consensus         3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   81 (259)
T d1xq1a_           3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSS   81 (259)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC-HHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999987765433   2244578999999999 65555433     


Q ss_pred             --cCCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       133 --~~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                        .+++|++|||||....        .+|+..+++|+.+++++++++    ++.+-++||++||......          
T Consensus        82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~----------  151 (259)
T d1xq1a_          82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS----------  151 (259)
T ss_dssp             HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------------
T ss_pred             HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccc----------
Confidence              2359999999997542        245567899999988888776    4556679999999854321          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ......|..+|.+.+.+.+       ++||++++|.||.+.+++.
T Consensus       152 --~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~  196 (259)
T d1xq1a_         152 --ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLA  196 (259)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----
T ss_pred             --ccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHh
Confidence              1224679999999987765       3699999999999988764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=1.3e-25  Score=195.03  Aligned_cols=173  Identities=16%  Similarity=0.151  Sum_probs=127.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch---h-----------------hhhccccCCCCeEEEEeeCCCCh
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD---K-----------------AKTTLSKDNPSLQIVKADVTEGS  125 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~---~-----------------~~~~~~~~~~~~~~i~~Dl~d~~  125 (252)
                      ||+|||||||||||++|+++|+++||+|++++.-..   .                 ..........+++++++||+| .
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d-~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD-F   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS-H
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCC-H
Confidence            689999999999999999999999999999862100   0                 000000023579999999999 8


Q ss_pred             HHHHHHHcC-CCcEEEEcCCCCCC----CC---CCCcceehHHHHHHHHHHHHhcCCC-EEEEEccceeeccCCCCCCC-
Q 025456          126 AKLSEAIGD-DSEAVVCATGFQPG----WD---LFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQILN-  195 (252)
Q Consensus       126 ~~~~~~~~~-~~d~vi~~ag~~~~----~~---~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~SS~~v~~~~~~~~~~-  195 (252)
                      +.+.+++.+ ++|+|||+|+....    .+   +...+++|+.|+.+++++|++.+++ ++++.||..+|+........ 
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~  159 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEG  159 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSS
T ss_pred             HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccccc
Confidence            999999876 58999999986541    11   2245689999999999999998764 67778887777643321100 


Q ss_pred             -----------cchhccchhhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCCC
Q 025456          196 -----------PAYIFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       196 -----------~~~~~~~~~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~  239 (252)
                                 ....+..+.+.|+.+|.++|.+++    +++++++++||++++|+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~  218 (393)
T d1i24a_         160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTD  218 (393)
T ss_dssp             EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCT
T ss_pred             cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCcc
Confidence                       011234566789999999998764    57999999999999998643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.92  E-value=2.4e-25  Score=183.27  Aligned_cols=163  Identities=17%  Similarity=0.146  Sum_probs=128.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHH------
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAI------  132 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~------  132 (252)
                      .++++|+++||||+++||++++++|+++|++|++.+|+.++.++..   .....++.++.+|++| ++++++++      
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANH   82 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC-HHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999988765433   2245678899999999 66665544      


Q ss_pred             -cCCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          133 -GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       133 -~~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                       .+++|++|||||....        ++|+..+++|+.+++++.+++    ++.+-++||++||......           
T Consensus        83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~-----------  151 (259)
T d2ae2a_          83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA-----------  151 (259)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSC-----------
T ss_pred             hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccc-----------
Confidence             2259999999997653        235567899999998888776    4556679999999853211           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                       ......|..+|++.+.+.+       ++||++++|.||.+.+++
T Consensus       152 -~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~  195 (259)
T d2ae2a_         152 -VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSL  195 (259)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHH
T ss_pred             -cccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHH
Confidence             1235779999999987765       368999999999998864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=3.1e-25  Score=180.75  Aligned_cols=161  Identities=17%  Similarity=0.191  Sum_probs=126.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+.++.++..+  ..+.+.+.+|++| +++++++++.      ++
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~--~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   78 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE--AVGAHPVVMDVAD-PASVERGFAEALAHLGRL   78 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--TTTCEEEECCTTC-HHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--HcCCeEEEEecCC-HHHHHHHHHHHHHhcCCc
Confidence            4679999999999999999999999999999999999887765443  2357889999999 7666655432      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH----hcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~----~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |++|||||+...        .+|+..+++|+.+++++.+++.    +.+.++++++||....+             ....
T Consensus        79 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~-------------~~~~  145 (242)
T d1ulsa_          79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG-------------NLGQ  145 (242)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC-------------CTTC
T ss_pred             eEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC-------------CCCC
Confidence            999999997653        2456678999999998888763    44555777777753211             1234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..|..+|++.+.+.+       ++||++++|.||.+.++...
T Consensus       146 ~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~  187 (242)
T d1ulsa_         146 ANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTA  187 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhh
Confidence            779999999987765       36899999999999998753

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.1e-25  Score=183.17  Aligned_cols=163  Identities=18%  Similarity=0.219  Sum_probs=127.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++++|+++||||+++||++++++|+++|++|++.+|+.++.++..   .....++.++++|++| +++++++++.    
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~-~~~~~~~~~~~~~~   85 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISK   85 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999987765432   2245678999999999 6666554431    


Q ss_pred             --CCcEEEEcCCCCCCC-------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 --DSEAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~-------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                        ++|++|||||.....       +|+..+++|+.+++++.+.+    ++.+-+++|++||......            .
T Consensus        86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~------------~  153 (255)
T d1fmca_          86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK------------N  153 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC------------C
T ss_pred             cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhcc------------c
Confidence              499999999975432       35566889999998888766    4555568999999753221            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..+..|..+|++.+.+.+       ++||++++|.||.+.++.
T Consensus       154 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~  196 (255)
T d1fmca_         154 INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA  196 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChH
Confidence            235789999999987765       368999999999998864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.2e-24  Score=185.35  Aligned_cols=168  Identities=17%  Similarity=0.249  Sum_probs=132.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      |+|||||||||||++|+++|+++| ++|+++++..+......  ..++++++++|+++..+..+..+.+ +|+|||+|+.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~--~~~~~~~i~~Di~~~~~~~~~~~~~-~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL--NHPHFHFVEGDISIHSEWIEYHVKK-CDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT--TCTTEEEEECCTTTCSHHHHHHHHH-CSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc--cCCCeEEEECccCChHHHHHHHHhC-CCcccccccc
Confidence            579999999999999999999999 58999988765544433  3468999999999833434446677 9999999997


Q ss_pred             CCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCc------chhccchhhHHHHHHHHHH
Q 025456          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNP------AYIFLNVFGLTLIAKLQAE  215 (252)
Q Consensus       146 ~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~------~~~~~~~~~~y~~sK~~~e  215 (252)
                      ...    .++...+++|+.|+.+++++|++.++ +++++||..+|+........+      ......+...|+.+|.++|
T Consensus        78 ~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E  156 (342)
T d2blla1          78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD  156 (342)
T ss_dssp             CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred             ccccccccCCccccccccccccccccccccccc-cccccccccccccccccccccccccccccccCCCcchhhhcccchh
Confidence            542    23445688999999999999999987 778899999988765433222      1233456788999999999


Q ss_pred             HHHH----HcCCcEEEEeCCcccCCCC
Q 025456          216 QYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       216 ~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      +++.    ++|++++++||+.++++..
T Consensus       157 ~~~~~~~~~~~~~~~i~r~~~~~g~~~  183 (342)
T d2blla1         157 RVIWAYGEKEGLQFTLFRPFNWMGPRL  183 (342)
T ss_dssp             HHHHHHHHHHCCCEEEEEECSEECSSC
T ss_pred             hhhhhhhcccCceeEEeeccccccccc
Confidence            8775    4699999999999999754

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1e-24  Score=184.11  Aligned_cols=170  Identities=18%  Similarity=0.132  Sum_probs=134.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh-hccc--cCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-TTLS--KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~  142 (252)
                      |+|||||||||||++|+++|+++||+|++++|..+... ..+.  ...++++++++|++| .+.+.+.+.. ..++++|+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD-ACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTC-HHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccC-hHHhhhhhccccccccccc
Confidence            68999999999999999999999999999998754321 1110  134679999999999 7878877654 47788888


Q ss_pred             CCCCC----CCCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHH
Q 025456          143 TGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (252)
Q Consensus       143 ag~~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (252)
                      ++...    ..++...++.|+.|+.+++++|++.++ ++|++.||..+|+.......+| ..+.++.+.|+.+|.++|.+
T Consensus        80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E-~~~~~p~~~Y~~sK~~~E~~  158 (321)
T d1rpna_          80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDE-NTPFYPRSPYGVAKLYGHWI  158 (321)
T ss_dssp             CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCT-TSCCCCCSHHHHHHHHHHHH
T ss_pred             cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCC-CCCccccChhHHHHHHHHHH
Confidence            87644    234456688999999999999999886 4788888888887665555444 34556778999999999987


Q ss_pred             HH----HcCCcEEEEeCCcccCCCC
Q 025456          218 IR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       218 ~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      ++    +++++++++||++++||..
T Consensus       159 ~~~~~~~~~~~~~~lr~~~vyGp~~  183 (321)
T d1rpna_         159 TVNYRESFGLHASSGILFNHESPLR  183 (321)
T ss_dssp             HHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             HHHHHhhcCCcEEEEEEecccCCCc
Confidence            75    4689999999999999864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=3.4e-25  Score=179.93  Aligned_cols=154  Identities=19%  Similarity=0.246  Sum_probs=121.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+++||++++++|+++|++|++++|+.+..        .++..+++|++| .+++++.++.      ++
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--------~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   74 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP--------KGLFGVEVDVTD-SDAVDRAFTAVEEHQGPV   74 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------TTSEEEECCTTC-HHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh--------cCceEEEEecCC-HHHHHHHHHHHHHhcCCc
Confidence            46799999999999999999999999999999999986533        457789999999 7666655432      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |++|||||....        ++|+..+++|+.+++++.+.+    ++.+.++||++||......            ....
T Consensus        75 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~------------~~~~  142 (237)
T d1uzma1          75 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWG------------IGNQ  142 (237)
T ss_dssp             SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------CC
T ss_pred             eEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccC------------Cccc
Confidence            999999997542        245667899999988777654    5667679999999854321            1234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|..+|++.+.+.+       ++||++++|.||.+.+++
T Consensus       143 ~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~  182 (237)
T d1uzma1         143 ANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDM  182 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChh
Confidence            789999999987765       369999999999998864

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=3.5e-25  Score=181.07  Aligned_cols=158  Identities=14%  Similarity=0.124  Sum_probs=123.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      ++||+++||||+++||++++++|+++|++|++.+|+.+..+.. +  ..+..++++|++| .++++++++.      ++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~-~--~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~iD   78 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVA-E--AIGGAFFQVDLED-ERERVRFVEEAAYALGRVD   78 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHH-H--HHTCEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-H--HcCCeEEEEeCCC-HHHHHHHHHHHHHhcCCCC
Confidence            5799999999999999999999999999999999987654321 1  1245788999999 6666555432      499


Q ss_pred             EEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          138 AVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       138 ~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      ++|||||+....        +|+..+++|+.+++++.+++    ++.+-++||++||...+..            .....
T Consensus        79 iLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~------------~~~~~  146 (248)
T d2d1ya1          79 VLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFA------------EQENA  146 (248)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSB------------CTTBH
T ss_pred             eEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccccc------------ccccc
Confidence            999999975432        35567899999998888876    4556679999999854321            12357


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .|..+|++.+.+.+       ++||++++|.||.+.+++
T Consensus       147 ~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~  185 (248)
T d2d1ya1         147 AYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA  185 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCch
Confidence            89999999987764       469999999999998864

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.92  E-value=5e-25  Score=181.43  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=127.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      ++++|+++||||+++||++++++|+++|++|++++|+.+..++.   +.....++..+.+|++| ++++++.++.     
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   80 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999998766543   23345678999999999 6666655432     


Q ss_pred             -CCcEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 -DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 -~~d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                       ++|++|||||....         .+|+..+++|+.+++++++++    ++.+-+++|++||...+..            
T Consensus        81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~------------  148 (260)
T d1zema1          81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG------------  148 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSC------------
T ss_pred             CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccC------------
Confidence             49999999996532         235566899999988888776    4455679999999854321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...+..|..+|++.+.+.+       ++||++++|.||.+.+++
T Consensus       149 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~  192 (260)
T d1zema1         149 PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGF  192 (260)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcc
Confidence            1235789999999987765       468999999999998864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-25  Score=180.82  Aligned_cols=164  Identities=12%  Similarity=0.080  Sum_probs=129.1

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      .+++||+++||||+++||++++++|+++|++|++.+|+.+++++..   .....++..+.+|++| .+++.+.++.    
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAE   81 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999988765432   2345679999999999 7666655431    


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|++|||||.....        +++.++++|+.|+.++++++    ++.+-++||++||...+.            +
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~------------~  149 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV------------S  149 (244)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC------------C
T ss_pred             cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC------------C
Confidence              499999999976532        34566899999988887765    566778999999985431            1


Q ss_pred             cchhhHHHHHHHHHHHHHH-------H---cCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------K---SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~---~gi~~~~lrPg~i~~~~~  238 (252)
                      ...+..|..+|++.+.+.+       +   .|+++++|.||++.++..
T Consensus       150 ~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~  197 (244)
T d1yb1a_         150 VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFI  197 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCST
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhh
Confidence            2336789999999887654       1   379999999999988754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.91  E-value=3.5e-25  Score=182.38  Aligned_cols=162  Identities=20%  Similarity=0.174  Sum_probs=123.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch-hhhhc---c-ccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTT---L-SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~~~---~-~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|+++||||+++||++++++|+++|++|++.+|+.. ..++.   + .....++.++++|++| .++++++++.    
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999753 33221   1 1134578899999999 7666665532    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        ++|++|||||+...        .+|+..+++|+.+++++++++    ++.+-++||++||......            
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~------------  148 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVA------------  148 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred             hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceec------------
Confidence              49999999997653        235567899999988877765    5566679999999854221            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ...+..|..+|++.+.+.+       ++||++++|.||.+.+++.
T Consensus       149 ~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~  193 (260)
T d1x1ta1         149 SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLV  193 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---
T ss_pred             cCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhh
Confidence            1235779999999987765       3689999999999998864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.91  E-value=5.5e-25  Score=180.26  Aligned_cols=162  Identities=15%  Similarity=0.147  Sum_probs=124.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+.+..++....  ...++.++++|++| +++++++++.      
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999999999999998776543221  34579999999999 6665554431      


Q ss_pred             CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCC-EEEEEccceeeccCCCCCCCcchhcc
Q 025456          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVN-RFILISSILVNGAAMGQILNPAYIFL  201 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~-~~v~~SS~~v~~~~~~~~~~~~~~~~  201 (252)
                      ++|++|||||.....        +|+..+++|+.+++++++++    ++.+.+ ++|++||...+..            .
T Consensus        82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~------------~  149 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG------------D  149 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC------------C
T ss_pred             CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceecc------------C
Confidence            499999999976532        35567899999999988876    344543 8999999853211            1


Q ss_pred             chhhHHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          202 NVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      .....|..+|.+.+.+.+         ++||++++|.||.+.+++
T Consensus       150 ~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~  194 (251)
T d1zk4a1         150 PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPL  194 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHH
T ss_pred             CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChh
Confidence            224779999998876543         358999999999998864

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.91  E-value=1.2e-24  Score=185.78  Aligned_cols=171  Identities=20%  Similarity=0.174  Sum_probs=129.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc-----cCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-----KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      .|++||||||+||||++|+++|+++|++|++++|+..+......     ........+.+|++| .+.+.+++.+ +|+|
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~-~~~v   87 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK-QGAYDEVIKG-AAGV   87 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS-TTTTTTTTTT-CSEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccc-hhhhhhhccc-chhh
Confidence            48999999999999999999999999999999998765443211     122344567789999 7888888988 9999


Q ss_pred             EEcCCCCC-CCCCCCcceehHHHHHHHHHHHHhc-CCCEEEEEccceeeccCCC-C---CCC---------------cch
Q 025456          140 VCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAMG-Q---ILN---------------PAY  198 (252)
Q Consensus       140 i~~ag~~~-~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~v~~SS~~v~~~~~~-~---~~~---------------~~~  198 (252)
                      +|+++... ..++...++.|+.|+.+++++|++. ++++|||+||..+++.... .   ..+               +..
T Consensus        88 ~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~  167 (342)
T d1y1pa1          88 AHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPES  167 (342)
T ss_dssp             EECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTT
T ss_pred             hhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccccccc
Confidence            99998644 3344455678999999999999886 6899999999764322111 0   001               112


Q ss_pred             hccchhhHHHHHHHHHHHHHH----Hc--CCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR----KS--GINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~----~~--gi~~~~lrPg~i~~~~  237 (252)
                      .+.++...|+.+|..+|.++.    ++  ++++++++|+.++|+.
T Consensus       168 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~  212 (342)
T d1y1pa1         168 DPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTI  212 (342)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCC
T ss_pred             CCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCC
Confidence            345667889999999997553    33  5788999999999975

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.91  E-value=1.3e-24  Score=179.68  Aligned_cols=166  Identities=14%  Similarity=0.159  Sum_probs=127.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC------
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~------  134 (252)
                      ++++|+++||||+++||++++++|+++|++|++++|+.++.++....  ....+.++.+|++| +++++++++.      
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            56899999999999999999999999999999999998776543321  33568889999999 7666665532      


Q ss_pred             CCcEEEEcCCCCCCC----------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 DSEAVVCATGFQPGW----------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 ~~d~vi~~ag~~~~~----------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      ++|++|||||.....          +|+..+++|+.|++++++++    ++.+-+++|++||...+....          
T Consensus        82 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~----------  151 (268)
T d2bgka1          82 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE----------  151 (268)
T ss_dssp             CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT----------
T ss_pred             CcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccccc----------
Confidence            499999999964321          24456789999988888776    445667999999875321111          


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~~  240 (252)
                       .....|..+|++.+.+.+       ++||++++|.||.+.|++...
T Consensus       152 -~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~  197 (268)
T d2bgka1         152 -GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTD  197 (268)
T ss_dssp             -TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTT
T ss_pred             -ccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhh
Confidence             112468899999987764       469999999999999987543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.91  E-value=1.4e-24  Score=178.65  Aligned_cols=163  Identities=16%  Similarity=0.172  Sum_probs=125.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-hhh---ccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+.+. .+.   .+.....++..+++|++| +++++++++.    
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~   82 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKE   82 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999998643 222   222244678899999999 7666655532    


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCC-CEEEEEccceeeccCCCCCCCcchh
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGV-NRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~-~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        ++|++|||||+...        .+|+..+++|+.+++++.+++    ++.+. ++||++||.....            
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------------  150 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------  150 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------------
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc------------
Confidence              49999999997653        245667899999988887775    44554 4688999975321            


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      +...+..|..+|++.+.+.+       ++||++++|.||.+.++..
T Consensus       151 ~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~  196 (261)
T d1geea_         151 PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPIN  196 (261)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGG
T ss_pred             cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhH
Confidence            11235789999999987765       4699999999999998753

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.91  E-value=1.1e-24  Score=179.15  Aligned_cols=159  Identities=18%  Similarity=0.206  Sum_probs=125.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      +|++|||||+++||++++++|+++|++|++.+|+++..++..   .....++.++++|++| +++++++++.      ++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHhCCC
Confidence            789999999999999999999999999999999987765432   2245678999999999 7666655532      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHH------hcCCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR------KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~------~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                      |++|||||....        ++|+..+++|+.+++++++++.      +.+.+++|++||...+..            ..
T Consensus        81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~------------~~  148 (257)
T d2rhca1          81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQG------------VV  148 (257)
T ss_dssp             SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSC------------CT
T ss_pred             CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccc------------cc
Confidence            999999997553        2455678999999999999873      334568999999753211            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .+..|..+|++.+.+.+       ++||++++|.||.+.|++
T Consensus       149 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~  190 (257)
T d2rhca1         149 HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM  190 (257)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHH
Confidence            35789999999988765       368999999999998764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.91  E-value=6.8e-25  Score=179.86  Aligned_cols=161  Identities=17%  Similarity=0.171  Sum_probs=125.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+++||++++++|+++|++|++.+|+.+..++...+...+..++++|++| .+++++.++.      ++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~i   81 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSS-EADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTC-HHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCC-HHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999999999999999887766544345678899999999 6555544431      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |++|||||+...        ++|+..+++|+.+++++++++    ++.+ ++||++||.....            +....
T Consensus        82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-G~Iv~isS~~~~~------------~~~~~  148 (253)
T d1hxha_          82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWL------------PIEQY  148 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTS------------CCTTB
T ss_pred             CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-Cceecccchhhhc------------Ccccc
Confidence            999999997542        235567899999988887776    3344 7999999985421            11235


Q ss_pred             hHHHHHHHHHHHHHH-------H--cCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------K--SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~--~gi~~~~lrPg~i~~~~  237 (252)
                      ..|..+|++.+.+.+       +  ++|++++|.||.+.++.
T Consensus       149 ~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~  190 (253)
T d1hxha_         149 AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPM  190 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHH
T ss_pred             ccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHh
Confidence            789999998887654       2  35999999999998763

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.91  E-value=1.6e-23  Score=172.16  Aligned_cols=165  Identities=18%  Similarity=0.152  Sum_probs=126.1

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .++++|+++||||+++||++++++|+++|++|++++|+++++++.   +......+.++.+|+++ .+++++.+.     
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~-~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHV   80 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC-HHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999998765543   23345678899999999 666655442     


Q ss_pred             --CCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          134 --DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       134 --~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                        +.+|+||||||.....        +|...+++|+.+++++.+++    ++.+.+++|++||......           
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~-----------  149 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA-----------  149 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC-----------
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccc-----------
Confidence              2589999999976532        35566899999998888765    4556679999999854211           


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                       ...+..|..+|.+.+.+.+       +.||++++|.||.+.+++..
T Consensus       150 -~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~  195 (258)
T d1ae1a_         150 -LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVE  195 (258)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-----
T ss_pred             -cccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchh
Confidence             1235789999999987765       36899999999999998643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=4.6e-24  Score=172.98  Aligned_cols=156  Identities=18%  Similarity=0.268  Sum_probs=124.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      +++|+++||||+++||++++++|+++|++|++.+|+.+..++      .+.+++.+|+++..+.+.+.+++ +|++||||
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~------~~~~~~~~Dv~~~~~~~~~~~g~-iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR------SGHRYVVCDLRKDLDLLFEKVKE-VDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH------TCSEEEECCTTTCHHHHHHHSCC-CSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh------cCCcEEEcchHHHHHHHHHHhCC-CcEEEecc
Confidence            469999999999999999999999999999999999876654      23567889999866777777777 99999999


Q ss_pred             CCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHH
Q 025456          144 GFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (252)
Q Consensus       144 g~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (252)
                      |....        .+|+..+++|+.+++++++++    ++.+.+++|++||......            ......|..+|
T Consensus        75 G~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~------------~~~~~~Y~asK  142 (234)
T d1o5ia_          75 GGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISP------------IENLYTSNSAR  142 (234)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------CTTBHHHHHHH
T ss_pred             cccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccccc------------ccccccchhHH
Confidence            97542        235566789999988877765    5566679999999743221            12346788999


Q ss_pred             HHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          212 LQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       212 ~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ++.+.+.+       ++||++++|.||++.+++.
T Consensus       143 aal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~  176 (234)
T d1o5ia_         143 MALTGFLKTLSFEVAPYGITVNCVAPGWTETERV  176 (234)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTH
T ss_pred             HHHHHHHHHHHHHhcccCeEEeecccCccchhhh
Confidence            99887664       4699999999999998753

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-24  Score=176.26  Aligned_cols=160  Identities=18%  Similarity=0.184  Sum_probs=125.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      .||+++||||+++||++++++|+++|++|++++|+.++.++...   .  ...++.++++|++| .+++++.++.     
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC-HHHHHHHHHHHHHHc
Confidence            48999999999999999999999999999999999876553221   1  23468899999999 7666655531     


Q ss_pred             -CCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHH----HhcC---CCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          135 -DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEAC----RKRG---VNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~----~~~~---~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                       ++|++|||||.....+|++.+++|+.+++++.+.+    ++.+   .++||++||...+.            +...+..
T Consensus        81 G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~------------~~~~~~~  148 (254)
T d2gdza1          81 GRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM------------PVAQQPV  148 (254)
T ss_dssp             SCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS------------CCTTCHH
T ss_pred             CCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc------------CCCCccc
Confidence             49999999999988889999999999988777666    2322   25799999985321            1123577


Q ss_pred             HHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          207 TLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       207 y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      |..+|++.+.+.+         ++||++++|.||.+.|++
T Consensus       149 Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~  188 (254)
T d2gdza1         149 YCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAI  188 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChh
Confidence            9999998876543         368999999999998864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.91  E-value=3.6e-24  Score=175.61  Aligned_cols=163  Identities=15%  Similarity=0.161  Sum_probs=125.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc---c-ccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---L-SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~-~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      ++++|+|+||||+++||.+++++|+++|++|++++|+.++.+..   . .....++.++.+|++++.+++++.++     
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999998876554321   1 11345788999999842444444332     


Q ss_pred             -CCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHH----hc---CCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          134 -DDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACR----KR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~----~~---~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                       +++|++|||||.....+|+..+++|+.|++++.+++.    +.   ..+++|++||...+..            ...+.
T Consensus        82 ~g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~------------~~~~~  149 (254)
T d1sbya1          82 LKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA------------IHQVP  149 (254)
T ss_dssp             HSCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC------------CTTSH
T ss_pred             cCCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccC------------CCCCH
Confidence             1499999999998888999999999999999888762    22   2368999999854321            22357


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      .|..+|++...+.+       ++||+++.|.||++.|+.
T Consensus       150 ~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~  188 (254)
T d1sbya1         150 VYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPL  188 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCcc
Confidence            89999998887654       469999999999998863

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.91  E-value=3.1e-24  Score=176.15  Aligned_cols=158  Identities=21%  Similarity=0.220  Sum_probs=122.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------CCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~d  137 (252)
                      |+++||||+++||++++++|+++|++|++.+|++++.++..   .....++..+++|++| .+++++.++.      ++|
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHhCCcc
Confidence            56799999999999999999999999999999987765432   2245678999999999 7666655432      499


Q ss_pred             EEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcC-CCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       138 ~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~-~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      ++|||||+...        .+|+..+++|+.|++++++++    ++.+ .+++|++||...+.            +...+
T Consensus        81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~~~~  148 (255)
T d1gega_          81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------GNPEL  148 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CCTTB
T ss_pred             EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------cCccc
Confidence            99999997652        245667899999999888775    3333 35799999975321            11235


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|..+|++.+.+.+       ++||++++|.||.+.|++
T Consensus       149 ~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~  188 (255)
T d1gega_         149 AVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM  188 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH
T ss_pred             ccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChH
Confidence            789999999987764       469999999999998763

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=2.1e-24  Score=183.35  Aligned_cols=169  Identities=18%  Similarity=0.112  Sum_probs=129.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh-----hhhccc----cCCCCeEEEEeeCCCChHHHHHHHcC-CC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~  136 (252)
                      |++||||||||||++|+++|+++||+|++++|..+.     ......    .....++++.+|+++ .+.+.+.+.. ++
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~-~~~~~~~~~~~~~   80 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTD-ASSLRRWIDVIKP   80 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTC-HHHHHHHHHHHCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccC-HHHHHHHHhhhcc
Confidence            799999999999999999999999999999996432     111111    023568899999999 8888888764 48


Q ss_pred             cEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhc-----CCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKR-----GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       137 d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~-----~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      |+|||+|+....    .++...+..|+.++.++++++++.     ...++++.||..+++... ....| ..+.++.+.|
T Consensus        81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~-~~~~E-~~~~~p~~~Y  158 (339)
T d1n7ha_          81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP-PPQSE-TTPFHPRSPY  158 (339)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC-SSBCT-TSCCCCCSHH
T ss_pred             chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC-CCCCC-CCCCCCcchh
Confidence            999999987542    345566789999999999999753     234677888877765443 22333 3356778899


Q ss_pred             HHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          208 LIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       208 ~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      +.+|.++|+++.    .++++++++||+++|||..
T Consensus       159 ~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~  193 (339)
T d1n7ha_         159 AASKCAAHWYTVNYREAYGLFACNGILFNHESPRR  193 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred             hHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCC
Confidence            999999998764    4799999999999999854

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.90  E-value=9.1e-24  Score=175.27  Aligned_cols=162  Identities=14%  Similarity=0.172  Sum_probs=124.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++|+++||||+++||++++++|+++|++|++++|+++++++.......++..+.+|+++ .+++++++..      ++
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~i   80 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRS-LEDQKQAASRCVARFGKI   80 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEeccccc-HHHHHHHHHHHHHHhCCc
Confidence            4679999999999999999999999999999999999887766544344678999999999 6666555431      49


Q ss_pred             cEEEEcCCCCCCC-------------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchh
Q 025456          137 EAVVCATGFQPGW-------------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       137 d~vi~~ag~~~~~-------------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                      |++|||||+....             +|++.+++|+.+++++++++    ++.+ +++|+++|...+..           
T Consensus        81 dilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~-----------  148 (276)
T d1bdba_          81 DTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYP-----------  148 (276)
T ss_dssp             CEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTST-----------
T ss_pred             ccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccC-----------
Confidence            9999999964311             14566889999988887776    4445 68999888743211           


Q ss_pred             ccchhhHHHHHHHHHHHHHHH------cCCcEEEEeCCcccCCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~------~gi~~~~lrPg~i~~~~~  238 (252)
                       ......|..+|++.+.+.+.      .+|++++|.||.+.++..
T Consensus       149 -~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~  192 (276)
T d1bdba_         149 -NGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLR  192 (276)
T ss_dssp             -TSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCC
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcC
Confidence             12246799999998877652      359999999999988753

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.90  E-value=5.9e-24  Score=184.00  Aligned_cols=174  Identities=20%  Similarity=0.162  Sum_probs=131.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHH-CCCeEEEeecCc------------hhhhhcc--------ccCCCCeEEEEeeCCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDL------------DKAKTTL--------SKDNPSLQIVKADVTEG  124 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~------------~~~~~~~--------~~~~~~~~~i~~Dl~d~  124 (252)
                      +|+||||||+||||++|+++|++ .|++|+++++-.            +.....+        ......+.++.+|++| 
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d-   80 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN-   80 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC-
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC-
Confidence            56999999999999999999996 689999987411            0000000        0123468899999999 


Q ss_pred             hHHHHHHHcC--CCcEEEEcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCC----
Q 025456          125 SAKLSEAIGD--DSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQIL----  194 (252)
Q Consensus       125 ~~~~~~~~~~--~~d~vi~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~----  194 (252)
                      .+.+++++..  .+|+|||+|+....    .+....+++|+.++.++++++++.++++++++||..+|+.......    
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  160 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence            8888888753  38999999986542    2344567899999999999999999999999999888765433211    


Q ss_pred             --CcchhccchhhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCCCC
Q 025456          195 --NPAYIFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       195 --~~~~~~~~~~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~~~  240 (252)
                        .....+.+|.+.|+.+|..+|++++    .+|++++++||+++||+....
T Consensus       161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~  212 (383)
T d1gy8a_         161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDG  212 (383)
T ss_dssp             CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTS
T ss_pred             cccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccc
Confidence              1122345677899999999998875    369999999999999987643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.90  E-value=8.4e-24  Score=180.77  Aligned_cols=174  Identities=20%  Similarity=0.161  Sum_probs=131.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc--cCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      .++|+|||||||||||++|++.|+++|++|++++|+.......+.  ...++++++.+|++| .+.+.+++.. ++|+|+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d-~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD-QNKLLESIREFQPEIVF   84 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccC-hHhhhhhhhhchhhhhh
Confidence            368999999999999999999999999999999998765443221  134579999999999 8888888765 589999


Q ss_pred             EcCCCCCC----CCCCCcceehHHHHHHHHHHHHhcCC-CEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHH
Q 025456          141 CATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (252)
Q Consensus       141 ~~ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (252)
                      |+|+....    .++...+++|+.|+.++++++++.+. ..+++.|+..++.........+...+..+...|+.+|...|
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~~e  164 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAE  164 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHH
T ss_pred             hhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCccccccccch
Confidence            99986542    34556788999999999999988764 45566665554443332222233334566778888898888


Q ss_pred             HHHH-------------HcCCcEEEEeCCcccCCCC
Q 025456          216 QYIR-------------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       216 ~~~~-------------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ..++             ..++.++++||++++|+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~  200 (356)
T d1rkxa_         165 LVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGD  200 (356)
T ss_dssp             HHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTC
T ss_pred             hhhhHHhhhcccchhccccCceEEeccCCCeeCCCc
Confidence            6553             3578999999999999864

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.90  E-value=4e-24  Score=173.89  Aligned_cols=159  Identities=14%  Similarity=0.192  Sum_probs=123.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCe-------EEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFA-------VKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~-------V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      +.|+||||+++||++++++|+++|++       |++.+|+.++.++..   .....++.++.+|++| .++++++++.  
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~   80 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHIV   80 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHH
Confidence            46899999999999999999999987       888999987765432   2244678899999999 6666655432  


Q ss_pred             ----CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 ----DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ----~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                          ++|++|||||....        .+|+..+++|+.|++++++++    ++.+-+++|++||...+..          
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~----------  150 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKA----------  150 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------
T ss_pred             HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCC----------
Confidence                49999999997552        245667899999988877776    5556679999999854321          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                        ...+..|..+|++.+.+.+       ++|+++++|.||.+.|++.
T Consensus       151 --~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~  195 (240)
T d2bd0a1         151 --FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMW  195 (240)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTT
T ss_pred             --CCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchh
Confidence              1235789999998887654       3689999999999999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=6e-24  Score=176.19  Aligned_cols=161  Identities=19%  Similarity=0.226  Sum_probs=122.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c---CCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K---DNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~---~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      +++|+++||||+++||++++++|+++|++|++.+|+.+++++...   .   ...++..+.+|++| +++++++++.   
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC-HHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999876654221   1   22468999999999 6666655432   


Q ss_pred             ---CCcEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 ---DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                         ++|++|||||....          ++|+..+++|+.+++++.+++    ++.+-++++++||......         
T Consensus        81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~---------  151 (274)
T d1xhla_          81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQA---------  151 (274)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSC---------
T ss_pred             HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhcccc---------
Confidence               49999999986431          135566889999998887776    4455567888887642211         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                         ...+..|..+|++.+.+.+       ++||++++|.||.+.|+.
T Consensus       152 ---~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~  195 (274)
T d1xhla_         152 ---HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGF  195 (274)
T ss_dssp             ---CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSH
T ss_pred             ---CCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCch
Confidence               1234779999999987765       369999999999998874

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=6.9e-24  Score=174.95  Aligned_cols=162  Identities=21%  Similarity=0.225  Sum_probs=119.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc------CCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      +++|+++||||+++||++++++|+++|++|++.+|+.++.++....      ...++.++.+|++| .+++++.++.   
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC-HHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999998776543211      22468999999999 7666655532   


Q ss_pred             ---CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEcccee-eccCCCCCC
Q 025456          135 ---DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILV-NGAAMGQIL  194 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v-~~~~~~~~~  194 (252)
                         ++|++|||||....            ++|+..+++|+.+++++.+++    ++.+ +++|+++|... ..       
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~S~~~~~~-------  153 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLH-------  153 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSS-------
T ss_pred             HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc-Ccceeeeeeccccc-------
Confidence               49999999986421            135566889999998888776    3334 46666665421 11       


Q ss_pred             CcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                           +...+..|..+|++.+.+.+       ++||++++|.||.+.+++..
T Consensus       154 -----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~  200 (264)
T d1spxa_         154 -----ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGS  200 (264)
T ss_dssp             -----CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--
T ss_pred             -----cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchh
Confidence                 11224679999999987765       46999999999999988643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-23  Score=176.10  Aligned_cols=163  Identities=18%  Similarity=0.195  Sum_probs=124.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc--------cCCCCeEEEEeeCCCChHHHHHHHc
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--------KDNPSLQIVKADVTEGSAKLSEAIG  133 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~i~~Dl~d~~~~~~~~~~  133 (252)
                      ..+++|+++||||+++||++++++|+++|++|++.+|+.++.++...        ....++..+.+|++| .++++++++
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~   86 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVK   86 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC-HHHHHHHHH
Confidence            45789999999999999999999999999999999999876543211        124578999999999 766665543


Q ss_pred             C------CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCC
Q 025456          134 D------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILN  195 (252)
Q Consensus       134 ~------~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~  195 (252)
                      .      ++|++|||||....        .+|+..+++|+.+++++.+++    ++.+.+++|++||....+        
T Consensus        87 ~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~--------  158 (297)
T d1yxma1          87 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAG--------  158 (297)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTC--------
T ss_pred             HHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccccccc--------
Confidence            1      49999999997542        245567899999999988876    344456788887642111        


Q ss_pred             cchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                           ......|..+|++.+.+.+       ++||++++|.||.+.+++.
T Consensus       159 -----~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~  203 (297)
T d1yxma1         159 -----FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTA  203 (297)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGG
T ss_pred             -----ccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcch
Confidence                 1124678899999987765       3689999999999998763

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.89  E-value=7.8e-24  Score=174.25  Aligned_cols=171  Identities=17%  Similarity=0.192  Sum_probs=125.7

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc----ccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----SKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      +++++|+++||||+++||++++++|+++|++|++++|+.++..+..    .....++..+++|++| ++++++.++.   
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~   83 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDA   83 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999987654322    1134578999999999 7766655532   


Q ss_pred             ---CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----H-hcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----R-KRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~-~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                         ++|++|||||....        .+|++.+++|+.|++++.+++    . +.+.++++.++|........     ...
T Consensus        84 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~-----~~~  158 (260)
T d1h5qa_          84 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ-----SSL  158 (260)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCE-----EET
T ss_pred             HhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccc-----ccc
Confidence               49999999997543        245567899999998887765    2 33445677777654321110     000


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ........|..+|++.+.+.+       ++||++++|.||.+.++..
T Consensus       159 ~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~  205 (260)
T d1h5qa_         159 NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQT  205 (260)
T ss_dssp             TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGG
T ss_pred             ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcch
Confidence            111234679999999987764       4689999999999988753

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.89  E-value=6.7e-24  Score=172.97  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=121.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeec-Cchhhhhc---cccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r-~~~~~~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      +.|+||||+++||++++++|+++|++|++.++ +.+..++.   +.....++.++++|++| .++++++++.      ++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcCCC
Confidence            58999999999999999999999999988755 44443322   22234578899999999 7666655432      59


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchh
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~  204 (252)
                      |++|||||....        .+|+..+++|+.+++++.+++    ++.+-++||++||...+..            ....
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~------------~~~~  148 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIG------------NIGQ  148 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC------------CTTC
T ss_pred             CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCC------------CCCC
Confidence            999999997653        246677899999988887776    4556679999999854321            1234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      ..|..+|++.+.+.+       ++||++++|.||.+.++.
T Consensus       149 ~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~  188 (244)
T d1edoa_         149 ANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDM  188 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHH
T ss_pred             HHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHH
Confidence            789999999987765       369999999999998864

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=2.9e-23  Score=171.91  Aligned_cols=160  Identities=19%  Similarity=0.219  Sum_probs=119.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c---CCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K---DNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~---~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      +++|+++||||+++||++++++|+++|++|++.+|+.+++++...   .   ...++..+++|++| .+++++.++.   
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC-HHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999877654221   1   22468999999999 6666655431   


Q ss_pred             ---CCcEEEEcCCCCCCC------------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEcc-ceeeccCCCCCC
Q 025456          135 ---DSEAVVCATGFQPGW------------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISS-ILVNGAAMGQIL  194 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~------------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS-~~v~~~~~~~~~  194 (252)
                         ++|++|||||.....            +|+..+++|+.+++++++++    ++.+ +.+|+++| .+...       
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~Ss~a~~~-------  153 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQ-------  153 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSS-------
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC-Cccccccchhcccc-------
Confidence               499999999975421            14455789999998888876    3333 45665555 32211       


Q ss_pred             CcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                           +...+..|..+|++.+.+.+       ++||++++|.||.+.|++
T Consensus       154 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~  198 (272)
T d1xkqa_         154 -----AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGF  198 (272)
T ss_dssp             -----CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSH
T ss_pred             -----CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchh
Confidence                 11235779999999987764       368999999999998874

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.89  E-value=7.4e-23  Score=173.14  Aligned_cols=169  Identities=19%  Similarity=0.179  Sum_probs=126.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch--hhh--hccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--KAK--TTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~--~~~--~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~  142 (252)
                      +|||||||||||++|+++|+++|++|+++++-..  ...  ..+. ...+++++.+|++| .+.+.+++.+ ++|+|||+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~-~~~~~~~i~~Di~~-~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-SLGNFEFVHGDIRN-KNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-TTCCCEEEECCTTC-HHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh-ccCCcEEEEcccCC-HHHHHHHHHhcCCceEEee
Confidence            7999999999999999999999999999864221  111  1111 34689999999999 8889998876 57999999


Q ss_pred             CCCCCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccC-CCCCCC---------------cchhccc
Q 025456          143 TGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA-MGQILN---------------PAYIFLN  202 (252)
Q Consensus       143 ag~~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~-~~~~~~---------------~~~~~~~  202 (252)
                      |+....    .++...+++|+.||.+++++|++.+++++|+.||..+++.. ...+..               ....+.+
T Consensus        80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
T d1orra_          80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD  159 (338)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCC
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCccc
Confidence            987652    24567788999999999999999998777777766544332 211100               1112345


Q ss_pred             hhhHHHHHHHHHHHHHH----HcCCcEEEEeCCcccCCCC
Q 025456          203 VFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~----~~gi~~~~lrPg~i~~~~~  238 (252)
                      +...|+.+|...|.+..    .+++....+++..++++..
T Consensus       160 ~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
T d1orra_         160 FHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQ  199 (338)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTC
T ss_pred             cccccccccchhhhhhhhhhhccCcccccccccceeeccc
Confidence            67889999999987653    5789999999998887654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.89  E-value=2.7e-23  Score=169.05  Aligned_cols=162  Identities=15%  Similarity=0.166  Sum_probs=125.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      .+++|+++||||+++||++++++|+++|++|++.+|+.++.++...+...++.++++|+++ ++++++.++.      ++
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~-~~~i~~~~~~i~~~~g~i   80 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRL   80 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCC-HHHHHHHHHHHHHHhCCc
Confidence            3579999999999999999999999999999999999988776665556788999999999 7666655432      49


Q ss_pred             cEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       137 d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      |++|||||....        .+|.+.+++|+.++.++.+++...  +-+.++++||.+..             ....+..
T Consensus        81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~-------------~~~~~~~  147 (241)
T d2a4ka1          81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-------------GAFGLAH  147 (241)
T ss_dssp             CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-------------CHHHHHH
T ss_pred             cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-------------cccCccc
Confidence            999999986542        235567899999999999887432  22455555554211             1123567


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       207 y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      |+.+|++.+.+.+       ++|+++++|.||.+.++..
T Consensus       148 Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~  186 (241)
T d2a4ka1         148 YAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMT  186 (241)
T ss_dssp             HHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGG
T ss_pred             cchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHH
Confidence            9999999998765       3589999999999988754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.4e-22  Score=162.81  Aligned_cols=163  Identities=15%  Similarity=0.201  Sum_probs=123.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++|++|||||+++||+++++.|+++|++|++.+|++++.++...   .  ...++..+++|++| +++++++++.    
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC-HHHHHHHHHHHHHh
Confidence            679999999999999999999999999999999999877654322   1  23468889999999 6666554431    


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcC--CCEEEEEccceeeccCCCCCCCcch
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRG--VNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                        ++|++|||||.....        +|+..+++|+.+++++.+.+    ++.+  -+++|++||...+...         
T Consensus        87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~---------  157 (257)
T d1xg5a_          87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL---------  157 (257)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC---------
T ss_pred             cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC---------
Confidence              499999999975432        34556789999988877765    3433  3699999998532111         


Q ss_pred             hccchhhHHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                       +......|..+|++.+.+.+         ..+|++++|.||.+.++.
T Consensus       158 -p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~  204 (257)
T d1xg5a_         158 -PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQF  204 (257)
T ss_dssp             -SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSH
T ss_pred             -CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChh
Confidence             11234679999998886653         358999999999988764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.8e-23  Score=166.73  Aligned_cols=160  Identities=16%  Similarity=0.140  Sum_probs=124.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC--CCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--~~d~vi~  141 (252)
                      +++|+++||||+++||+++++.|+++|++|++.+|+++++++...  ..+++...+|+.+ .+.++.....  .+|++||
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~--~~~~~~~~~d~~~-~~~~~~~~~~~~~id~lVn   80 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK--YPGIQTRVLDVTK-KKQIDQFANEVERLDVLFN   80 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG--STTEEEEECCTTC-HHHHHHHHHHCSCCSEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh--ccCCceeeeeccc-cccccccccccccceeEEe
Confidence            679999999999999999999999999999999999887766443  3467888889877 5555544332  4999999


Q ss_pred             cCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHH
Q 025456          142 ATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (252)
Q Consensus       142 ~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~  209 (252)
                      |+|.....        +|+..+++|+.++..+++.+    ++.+.+++|++||....           ..+...+..|+.
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~-----------~~~~~~~~~Y~~  149 (245)
T d2ag5a1          81 VAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS-----------VKGVVNRCVYST  149 (245)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT-----------TBCCTTBHHHHH
T ss_pred             cccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhc-----------cCCccchhHHHH
Confidence            99976532        35566899999998888776    34455799999986320           011234578999


Q ss_pred             HHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          210 AKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       210 sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +|++.+.+.+       ++||++++|.||.+.++.
T Consensus       150 sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~  184 (245)
T d2ag5a1         150 TKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPS  184 (245)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHH
T ss_pred             HHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechh
Confidence            9999998775       369999999999998864

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=9.8e-23  Score=166.65  Aligned_cols=170  Identities=17%  Similarity=0.148  Sum_probs=119.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHc-------C
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-------~  134 (252)
                      |+.|+||||||+++||++++++|+++|+  +|++..|+.++.+++......++.++++|++| .+++++++.       .
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~~   79 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGG
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCC-HHHHHHHHHHHHHHhCC
Confidence            3569999999999999999999999995  68888999887766554455689999999999 666655442       1


Q ss_pred             -CCcEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHH----Hhc-----------CCCEEEEEccceeeccC
Q 025456          135 -DSEAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEAC----RKR-----------GVNRFILISSILVNGAA  189 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~----~~~-----------~~~~~v~~SS~~v~~~~  189 (252)
                       .+|++|||||+....         ++++.+++|+.|+.++++.+    ++.           ..++++.+|+...+-..
T Consensus        80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~  159 (250)
T d1yo6a1          80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD  159 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred             CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccC
Confidence             399999999975321         24456899999998887775    221           12477887776432111


Q ss_pred             CCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          190 MGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       190 ~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..     ......+...|..+|++...+.+       +.|+++++|.||++.|++..
T Consensus       160 ~~-----~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~  211 (250)
T d1yo6a1         160 NT-----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG  211 (250)
T ss_dssp             CC-----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------
T ss_pred             Cc-----ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCC
Confidence            10     01112234679999999887654       46899999999999998754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=6.5e-23  Score=167.52  Aligned_cols=165  Identities=18%  Similarity=0.257  Sum_probs=121.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHH---HCCCeEEEeecCchhhhhcc--ccCCCCeEEEEeeCCCChHHHHHHHc-------
Q 025456           66 QKKIFVAGATGSSGKRIVEQLL---AKGFAVKAGVRDLDKAKTTL--SKDNPSLQIVKADVTEGSAKLSEAIG-------  133 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~---~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~i~~Dl~d~~~~~~~~~~-------  133 (252)
                      ||+||||||+++||++++++|+   ++|++|++.+|+.++.++..  .....++.++.+|++| .++++++++       
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~   80 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEGVTK   80 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHHHHG
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc-HHHHHHHHhhhHHHhh
Confidence            7899999999999999999997   46999999999987665422  1134689999999999 655554432       


Q ss_pred             -CCCcEEEEcCCCCCCC---------CCCCcceehHHHHHHHHHHH----Hhc-----------CCCEEEEEccceeecc
Q 025456          134 -DDSEAVVCATGFQPGW---------DLFAPWKVDNFGTVNLVEAC----RKR-----------GVNRFILISSILVNGA  188 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~----~~~-----------~~~~~v~~SS~~v~~~  188 (252)
                       +++|++|||||+....         +++..+++|+.|+..+++.+    ++.           +.+++|++||....- 
T Consensus        81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~-  159 (248)
T d1snya_          81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSI-  159 (248)
T ss_dssp             GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCS-
T ss_pred             cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccccccc-
Confidence             1599999999974421         24456789999988887775    221           346899999974221 


Q ss_pred             CCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCCC
Q 025456          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~~  240 (252)
                       .+.       +...+..|..+|++...+.+       +.|++++.|.||++.|++...
T Consensus       160 -~~~-------~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~~~  210 (248)
T d1snya_         160 -QGN-------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS  210 (248)
T ss_dssp             -TTC-------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT
T ss_pred             -CCC-------CCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcccc
Confidence             110       11234689999998887654       468999999999999987644

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.2e-23  Score=173.90  Aligned_cols=163  Identities=17%  Similarity=0.090  Sum_probs=120.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh---------hhccccCCCCeEEEEeeCCCChHHHHHHH
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA---------KTTLSKDNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~---------~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      +++++|+++||||+++||++++++|+++|++|++.+|+.+..         ++...........+.+|++| .+++++.+
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v   81 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLV   81 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccch-HHHHHHHH
Confidence            567899999999999999999999999999999988765422         11111111234556788888 44444333


Q ss_pred             c------CCCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCC
Q 025456          133 G------DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQIL  194 (252)
Q Consensus       133 ~------~~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~  194 (252)
                      +      +++|++|||||+...        .+|+..+++|+.|++++++++    ++++-++||++||...+..      
T Consensus        82 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~------  155 (302)
T d1gz6a_          82 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG------  155 (302)
T ss_dssp             HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC------
T ss_pred             HHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCC------
Confidence            2      149999999998653        245667899999998888775    5666689999999854321      


Q ss_pred             CcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                            ......|..+|++.+.+.+       ++||++++|.||.+.+..
T Consensus       156 ------~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~  199 (302)
T d1gz6a_         156 ------NFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMT  199 (302)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTT
T ss_pred             ------CCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcch
Confidence                  1235789999999987764       469999999999886654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=1.5e-22  Score=161.19  Aligned_cols=149  Identities=21%  Similarity=0.257  Sum_probs=113.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      .|+|+|||||||||++|+++|+++|+  +|+++.|++..       ...++.   .+..| ..++.+.+...+|+||||+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------~~~~~~---~~~~d-~~~~~~~~~~~~d~vi~~~   70 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPRLD---NPVGP-LAELLPQLDGSIDTAFCCL   70 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTTEE---CCBSC-HHHHGGGCCSCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------hccccc---ccccc-hhhhhhccccchheeeeee
Confidence            48999999999999999999999997  67777765422       112333   33444 3333334333489999999


Q ss_pred             CCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc
Q 025456          144 GFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (252)
Q Consensus       144 g~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (252)
                      |...  ..+...+.++|+.++.+++++|++.++++|+++||.++++.              ....|..+|..+|+.+++.
T Consensus        71 g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~--------------~~~~y~~~K~~~E~~l~~~  136 (212)
T d2a35a1          71 GTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK--------------SSIFYNRVKGELEQALQEQ  136 (212)
T ss_dssp             CCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------CSSHHHHHHHHHHHHHTTS
T ss_pred             eeeccccccccccccchhhhhhhcccccccccccccccccccccccc--------------cccchhHHHHHHhhhcccc
Confidence            8653  22334567899999999999999999999999999876532              2356889999999999887


Q ss_pred             CC-cEEEEeCCcccCCCCC
Q 025456          222 GI-NYTIIRPGGLRNEPPT  239 (252)
Q Consensus       222 gi-~~~~lrPg~i~~~~~~  239 (252)
                      +. +++++||+.++|+...
T Consensus       137 ~~~~~~I~Rp~~v~G~~~~  155 (212)
T d2a35a1         137 GWPQLTIARPSLLFGPREE  155 (212)
T ss_dssp             CCSEEEEEECCSEESTTSC
T ss_pred             ccccceeeCCcceeCCccc
Confidence            77 5999999999998643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.87  E-value=4.1e-22  Score=164.87  Aligned_cols=166  Identities=18%  Similarity=0.259  Sum_probs=124.2

Q ss_pred             hcccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hh---ccccCCCCeEEEEeeCCCChHHHHHHHcC-
Q 025456           60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (252)
Q Consensus        60 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-  134 (252)
                      .+.+++||+++||||+++||++++++|+++|++|++.+|+.++. ++   .+.....++.++++|++| ++++.+.++. 
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~v~~~~~~~   90 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEA   90 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCC-HHHHHHHHHHH
Confidence            34568899999999999999999999999999999998875432 22   222345679999999999 6666655432 


Q ss_pred             -----CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchh
Q 025456          135 -----DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYI  199 (252)
Q Consensus       135 -----~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~  199 (252)
                           ++|++|||+|.....        +|...+++|+.+++++++++...  .-+++++++|.....           .
T Consensus        91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~-----------~  159 (272)
T d1g0oa_          91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA-----------K  159 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC-----------S
T ss_pred             HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc-----------c
Confidence                 499999999875432        34556789999999999988532  225788887763211           0


Q ss_pred             ccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                      +...+..|..+|++.+.+.+       ++||++++|.||.+.++.
T Consensus       160 ~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~  204 (272)
T d1g0oa_         160 AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDM  204 (272)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChH
Confidence            12235678999999987765       469999999999998763

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=2.5e-22  Score=164.79  Aligned_cols=164  Identities=21%  Similarity=0.275  Sum_probs=118.5

Q ss_pred             ccCCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCchhhhhc--cccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKTT--LSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .++++|+++||||+|  +||++++++|+++|++|++.+|+.+..+..  ......+..++++|++| .+++++.++.   
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~   82 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQ-DEELDALFAGVKE   82 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCC-HHHHHHHHHHHHH
Confidence            357899999999987  899999999999999999888876433221  11123467889999999 6666655431   


Q ss_pred             ---CCcEEEEcCCCCCC------------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcc
Q 025456          135 ---DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~  197 (252)
                         ++|++|||||....            .+|...+++|+.++..+++.+...  +-+++|++||......         
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~---------  153 (256)
T d1ulua_          83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKV---------  153 (256)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSB---------
T ss_pred             hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCC---------
Confidence               49999999987531            123446789999999998887432  1258999998753211         


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                         ...+..|..+|++.+.+.+       ++||++++|.||.+.++..
T Consensus       154 ---~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~  198 (256)
T d1ulua_         154 ---VPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAA  198 (256)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----
T ss_pred             ---CCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccc
Confidence               1235789999999987765       4699999999999988754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=6.9e-21  Score=153.03  Aligned_cols=162  Identities=27%  Similarity=0.356  Sum_probs=126.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCe--EEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      +++|||||||||||+++++.|+++|++  |+.+.|++++....    ..+++++.+|+++ .+.+.+++.+ +|+|||++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~----~~~~~~~~~d~~~-~~~~~~~~~~-~d~vi~~a   76 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI----GGEADVFIGDITD-ADSINPAFQG-IDALVILT   76 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT----TCCTTEEECCTTS-HHHHHHHHTT-CSEEEECC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc----cCCcEEEEeeecc-cccccccccc-ceeeEEEE
Confidence            799999999999999999999999965  66678887765542    3578999999999 8999999999 99999998


Q ss_pred             CCCCC-----------------CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhH
Q 025456          144 GFQPG-----------------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (252)
Q Consensus       144 g~~~~-----------------~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~  206 (252)
                      +....                 .++.....+|+.++.++++.+.....+++.+.|+...+....     +  ........
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-----~--~~~~~~~~  149 (252)
T d2q46a1          77 SAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDH-----P--LNKLGNGN  149 (252)
T ss_dssp             CCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTC-----G--GGGGGGCC
T ss_pred             eeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCc-----c--cccccccc
Confidence            75431                 123344578899999999999998888999988764432211     1  11222345


Q ss_pred             HHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCC
Q 025456          207 TLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG  240 (252)
Q Consensus       207 y~~sK~~~e~~~~~~gi~~~~lrPg~i~~~~~~~  240 (252)
                      |...+...+.+.+..+++++++||++++|+....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~~  183 (252)
T d2q46a1         150 ILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGV  183 (252)
T ss_dssp             HHHHHHHHHHHHHHSSSCEEEEEECEEECSCTTS
T ss_pred             hhhhhhhhhhhhhcccccceeecceEEECCCcch
Confidence            6677777788888899999999999999987643

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3.7e-22  Score=163.98  Aligned_cols=162  Identities=14%  Similarity=0.155  Sum_probs=124.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHH---CCCeEEEeecCchhhhhcccc-----CCCCeEEEEeeCCCChHHHHHHHc-
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLA---KGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIG-  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~i~~Dl~d~~~~~~~~~~-  133 (252)
                      .+++|+++||||+++||++++++|++   +|++|++++|+.+++++....     ...++..+++|++| .++++++++ 
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~-~~~v~~l~~~   81 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT-EAGVQRLLSA   81 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS-HHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC-HHHHHHHHHH
Confidence            46799999999999999999999986   799999999998876543221     23468899999999 777666542 


Q ss_pred             ---------CCCcEEEEcCCCCCC-----------CCCCCcceehHHHHHHHHHHHHh----cC--CCEEEEEccceeec
Q 025456          134 ---------DDSEAVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEACRK----RG--VNRFILISSILVNG  187 (252)
Q Consensus       134 ---------~~~d~vi~~ag~~~~-----------~~~~~~~~~n~~g~~~ll~~~~~----~~--~~~~v~~SS~~v~~  187 (252)
                               ..+|++|||||....           .+|+..+++|+.++.++.+++..    .+  .+++|++||...+.
T Consensus        82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~  161 (259)
T d1oaaa_          82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence                     137899999986431           12456688999999999998843    22  25899999985321


Q ss_pred             cCCCCCCCcchhccchhhHHHHHHHHHHHHHH-----HcCCcEEEEeCCcccCCC
Q 025456          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-----KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-----~~gi~~~~lrPg~i~~~~  237 (252)
                                  +...+..|..+|++.+.+.+     ..|+++++|.||.+.+++
T Consensus       162 ------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~  204 (259)
T d1oaaa_         162 ------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDM  204 (259)
T ss_dssp             ------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHH
T ss_pred             ------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHH
Confidence                        12235789999999987764     368999999999998874

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.86  E-value=1e-21  Score=161.41  Aligned_cols=162  Identities=21%  Similarity=0.283  Sum_probs=119.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hh---ccccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +++||+||||||+++||++++++|+++|++|++.+|+.++. ++   .+.....++..+++|++| .+++++.+..    
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCC-HHHHHHHHHHHHHH
Confidence            56799999999999999999999999999999877654432 22   223345678999999999 6666655431    


Q ss_pred             --CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccc
Q 025456          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (252)
Q Consensus       135 --~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~  202 (252)
                        ++|++|||||.....        +|+..+++|+.+.+++++.+..+  .-++++.++|...  ...+         ..
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~--~~~~---------~~  150 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAA--VMTG---------IP  150 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGG--TCCS---------CC
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccc--cccC---------CC
Confidence              499999999976533        34466899999999988888432  1246666665421  1101         12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                      .+..|..+|++.+.+.+       ..||++++|.||++.++
T Consensus       151 ~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~  191 (259)
T d1ja9a_         151 NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTD  191 (259)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccCh
Confidence            24779999999887765       36899999999999875

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.8e-22  Score=163.87  Aligned_cols=160  Identities=19%  Similarity=0.253  Sum_probs=118.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEe---ecCchhhhh------ccccCCCCeEEEEeeCCCChHHHHHHHcC--
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG---VRDLDKAKT------TLSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~---~r~~~~~~~------~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~--  134 (252)
                      .|.|+||||++|||++++++|+++|++|+.+   .|+.+...+      .+.....++..+.+|++| .+++.+++..  
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~   80 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERVT   80 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTCT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc-hHhhhhhhhhcc
Confidence            4788999999999999999999999875544   444333221      112245679999999999 7777776643  


Q ss_pred             --CCcEEEEcCCCCCC--------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       135 --~~d~vi~~ag~~~~--------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                        .+|++|||+|....        ++|+..+++|+.|+.++++++    ++.+-++||++||.....            +
T Consensus        81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~------------~  148 (285)
T d1jtva_          81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM------------G  148 (285)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS------------C
T ss_pred             ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC------------C
Confidence              59999999987553        235566899999988887775    566668999999985321            1


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ......|..+|++.+.+.+       ++|+++++|.||.+.|+..
T Consensus       149 ~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~  193 (285)
T d1jtva_         149 LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFM  193 (285)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC---
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHH
Confidence            1235789999999887654       4699999999999999764

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.86  E-value=8.3e-23  Score=167.29  Aligned_cols=155  Identities=17%  Similarity=0.147  Sum_probs=115.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHH-------HHHHcCCCcEEE
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL-------SEAIGDDSEAVV  140 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~-------~~~~~~~~d~vi  140 (252)
                      +++||||+++||++++++|+++|++|++.+|+.+..++....   ...+..+|++| .+++       .+.+++ +|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~---~~~~~~~dv~~-~~~~~~~~~~~~~~~G~-iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAF---AETYPQLKPMS-EQEPAELIEAVTSAYGQ-VDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHH---HHHCTTSEECC-CCSHHHHHHHHHHHHSC-CCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhh---hCcEEEeccCC-HHHHHHHHHHHHHHcCC-CCEEE
Confidence            789999999999999999999999999999987665443211   11233578877 3333       334445 99999


Q ss_pred             EcCCCCCC---------CCCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          141 CATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       141 ~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||||....         ++|+..+++|+.+++++++++    ++.+-++||++||...+..            ......|
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~------------~~~~~~Y  144 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGP------------WKELSTY  144 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSC------------CTTCHHH
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccc------------ccccccc
Confidence            99986432         235566789999988887775    5556679999999853221            1234789


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       208 ~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                      ..+|.+.+.+.+       ++||++++|.||.+.+++..
T Consensus       145 ~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~  183 (252)
T d1zmta1         145 TSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSP  183 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCC
T ss_pred             ccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchh
Confidence            999999987765       46999999999999988654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.1e-22  Score=163.32  Aligned_cols=174  Identities=16%  Similarity=0.115  Sum_probs=122.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCchhhhhcc---ccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      ++++||||+++||++++++|+++ |++|++.+|+.++.++..   .....++.++++|++| .++++++++.      ++
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~-~~sv~~~~~~~~~~~g~i   82 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEYGGL   82 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHHSSE
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCC-HHHHHHHHHHHHHhcCCc
Confidence            45599999999999999999986 899999999988765432   2245678999999999 6666554431      49


Q ss_pred             cEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCC-C----------CC
Q 025456          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQ-I----------LN  195 (252)
Q Consensus       137 d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~-~----------~~  195 (252)
                      |++|||||+....        +++..+++|+.|++++++.+...  .-+++|++||.......... +          ..
T Consensus        83 DiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~~~  162 (275)
T d1wmaa1          83 DVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETIT  162 (275)
T ss_dssp             EEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSCC
T ss_pred             EEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcccccc
Confidence            9999999986532        23456789999999999998431  12589999997542111000 0          00


Q ss_pred             c------------------chhccchhhHHHHHHHHHHHHHH--------H---cCCcEEEEeCCcccCCCCCCc
Q 025456          196 P------------------AYIFLNVFGLTLIAKLQAEQYIR--------K---SGINYTIIRPGGLRNEPPTGN  241 (252)
Q Consensus       196 ~------------------~~~~~~~~~~y~~sK~~~e~~~~--------~---~gi~~~~lrPg~i~~~~~~~~  241 (252)
                      +                  ......+...|..+|++...+.+        +   .|++++++.||++.|++....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~  237 (275)
T d1wmaa1         163 EEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK  237 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTT
T ss_pred             hhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCc
Confidence            0                  00011223569999998765432        1   389999999999999875443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.85  E-value=5.2e-21  Score=159.80  Aligned_cols=164  Identities=18%  Similarity=0.203  Sum_probs=119.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc----ccCCCCeEEEEeeCCCChHHHHHHHcC---
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----SKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~i~~Dl~d~~~~~~~~~~~---  134 (252)
                      .+++||+++||||+|+||++++++|+++|++|++++|+.++.++..    ......+.++.+|++| .+++++.+..   
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~   99 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIK   99 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC-hHHHHHHhhhhhh
Confidence            5678999999999999999999999999999999999987654322    1234678899999999 7766654431   


Q ss_pred             ---CCcEEEEcCCCCCCCC--------CCCcceehHHHHHHHHHHH----H-hcCCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 ---DSEAVVCATGFQPGWD--------LFAPWKVDNFGTVNLVEAC----R-KRGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 ---~~d~vi~~ag~~~~~~--------~~~~~~~n~~g~~~ll~~~----~-~~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                         ++|++|||||......        +...+.+|..+...+...+    . ..+.+.++.++|.....           
T Consensus       100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-----------  168 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-----------  168 (294)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-----------
T ss_pred             hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh-----------
Confidence               4999999999765332        3344577777766665544    2 23345677777763221           


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                       .......|..+|.+.+.+.+       ++||++++|.||.+.++..
T Consensus       169 -~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~  214 (294)
T d1w6ua_         169 -GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGA  214 (294)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC---
T ss_pred             -cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchh
Confidence             11234679999999988765       3689999999999988764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-21  Score=159.01  Aligned_cols=164  Identities=18%  Similarity=0.115  Sum_probs=123.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC------CC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~------~~  136 (252)
                      +++||+++||||+++||++++++|+++|++|++++|+.++.++.......+......|+.+ .+.+++....      ..
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS-EKDVQTALALAKGKFGRV   80 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcccccccccc-cccccccccccccccccc
Confidence            5689999999999999999999999999999999999887765554445678888999988 5444433221      38


Q ss_pred             cEEEEcCCCCCC--------------CCCCCcceehHHHHHHHHHHHHhc----------CCCEEEEEccceeeccCCCC
Q 025456          137 EAVVCATGFQPG--------------WDLFAPWKVDNFGTVNLVEACRKR----------GVNRFILISSILVNGAAMGQ  192 (252)
Q Consensus       137 d~vi~~ag~~~~--------------~~~~~~~~~n~~g~~~ll~~~~~~----------~~~~~v~~SS~~v~~~~~~~  192 (252)
                      |.++++++....              .+|+..+++|+.+++++.+++...          +.++||++||...+..    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~----  156 (248)
T d2o23a1          81 DVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG----  156 (248)
T ss_dssp             CEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC----
T ss_pred             cccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccC----
Confidence            999988765321              134466789999999999887321          3358999999854321    


Q ss_pred             CCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                              ...+..|..+|++.+.+.+       ++||++++|.||.+.+++..
T Consensus       157 --------~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~  202 (248)
T d2o23a1         157 --------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLT  202 (248)
T ss_dssp             --------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC---
T ss_pred             --------CCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhh
Confidence                    2235789999999998765       36899999999999988643

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.85  E-value=1.9e-21  Score=160.54  Aligned_cols=151  Identities=21%  Similarity=0.247  Sum_probs=123.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      |+|||||||||||++|+++|.++|++|++++|+.                  +|++| .+++.+++.+ ++|+|||+|+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~------------------~D~~d-~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------LDITN-VLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT------------------CCTTC-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh------------------ccCCC-HHHHHHHHHHcCCCEEEeeccc
Confidence            6799999999999999999999999999988752                  48889 8888888875 58999999986


Q ss_pred             CCC----CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc
Q 025456          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (252)
Q Consensus       146 ~~~----~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (252)
                      ...    ..+......|+.....+.+.++..+. .+++.||..+|+.....+..+.. +.++...|+.+|...|+++++.
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v~~~~~~~~~~e~~-~~~~~~~~~~~k~~~e~~~~~~  140 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFD-EVNPQSAYGKTKLEGENFVKAL  140 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTS-CCCCCSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhcccccccccccccccccccc-cccccccceeeeccccccccccc-cccchhhhhhhhhHHHHHHHHh
Confidence            541    22334567788888889888887775 88888888888776555554433 3466788999999999999999


Q ss_pred             CCcEEEEeCCcccCCCC
Q 025456          222 GINYTIIRPGGLRNEPP  238 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~~  238 (252)
                      +.+++++||++++|+..
T Consensus       141 ~~~~~i~R~~~vyG~~~  157 (281)
T d1vl0a_         141 NPKYYIVRTAWLYGDGN  157 (281)
T ss_dssp             CSSEEEEEECSEESSSS
T ss_pred             CCCccccceeEEeCCCc
Confidence            99999999999999864

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-20  Score=155.87  Aligned_cols=159  Identities=14%  Similarity=0.214  Sum_probs=120.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCChHHHHH-------HH
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSE-------AI  132 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~-------~~  132 (252)
                      ++||+++||||++|||++++++|+++|++|++++|+.+++++...    .....+..+.+|+.+ .+.+..       .+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED-MTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhh-HHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999999887765332    134567888889887 443333       33


Q ss_pred             cCCCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeeccCCCCCCCcchhc
Q 025456          133 GDDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~  200 (252)
                      +. +|+++||||.....        +++..+++|+.++..+.+.+    ++.+ +++|++||...+.            +
T Consensus        91 g~-~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~-G~ii~isS~~~~~------------~  156 (269)
T d1xu9a_          91 GG-LDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKV------------A  156 (269)
T ss_dssp             TS-CSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGGTS------------C
T ss_pred             CC-ccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC-CcceEeccchhcC------------C
Confidence            44 99999999875432        23345789999988877766    3333 6999999975321            1


Q ss_pred             cchhhHHHHHHHHHHHHHH---------HcCCcEEEEeCCcccCCC
Q 025456          201 LNVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~---------~~gi~~~~lrPg~i~~~~  237 (252)
                      ...+..|..+|++.+.+.+         ..+|+++.|.||.+.|+.
T Consensus       157 ~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~  202 (269)
T d1xu9a_         157 YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET  202 (269)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcH
Confidence            2235789999999887653         246999999999999874

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.84  E-value=3.3e-21  Score=159.97  Aligned_cols=153  Identities=13%  Similarity=0.093  Sum_probs=120.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~  145 (252)
                      |+|||||||||||++|++.|.++|+.|. +.++...              +.+|++| .+.+.+.+.+ ++|+|||+||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~--------------~~~Dl~~-~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKE--------------FCGDFSN-PKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSS--------------SCCCTTC-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCcc--------------ccCcCCC-HHHHHHHHHHcCCCEEEEeccc
Confidence            5799999999999999999999986554 4443221              2369999 8889888875 58999999986


Q ss_pred             CC----CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHc
Q 025456          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (252)
Q Consensus       146 ~~----~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (252)
                      ..    ..++...+++|+.++.+++++|++.++ +++++||..+|+.....+..|.. +..+.+.|+.+|..+|++++..
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~~~~~~~E~~-~~~p~~~y~~~k~~~e~~~~~~  142 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETD-ATSPLNVYGKTKLAGEKALQDN  142 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTS-CCCCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCccccccccccccccchhhhhcccc-ccccccccccccCCCCCCCcccc-ccCCCchHhhhhhhhhhhHHhh
Confidence            54    334455678999999999999999886 88899998888766665555543 4567789999999999999887


Q ss_pred             CCcEEEEeCCcccCCC
Q 025456          222 GINYTIIRPGGLRNEP  237 (252)
Q Consensus       222 gi~~~~lrPg~i~~~~  237 (252)
                      .....+++++..+...
T Consensus       143 ~~~~~~~~~~~~~~~~  158 (298)
T d1n2sa_         143 CPKHLIFRTSWVYAGK  158 (298)
T ss_dssp             CSSEEEEEECSEECSS
T ss_pred             hcccccccccceeecc
Confidence            7778888887766543

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.83  E-value=3.2e-20  Score=152.15  Aligned_cols=158  Identities=21%  Similarity=0.210  Sum_probs=121.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhh---hhc---cccCCCCeEEEEeeCCCChHHHHHHHcC----
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKA---KTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~---~~~---~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----  134 (252)
                      +.+|+||||+|+||++++++|+++|+ +|+++.|+....   ++.   +.....++.++.+|++| .+++.+++..    
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d-~~~~~~~~~~i~~~   87 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLGGIGDD   87 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTSCTT
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch-HHHHHHhhcccccc
Confidence            57999999999999999999999998 588888874332   111   12244678999999999 7888877653    


Q ss_pred             -CCcEEEEcCCCCCCC--------CCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~--------~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                       ++|.||||+|.....        ++...+++|+.++.++.++++..+.++||++||....-..            ....
T Consensus        88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~------------~~~~  155 (259)
T d2fr1a1          88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGA------------PGLG  155 (259)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCC------------TTCT
T ss_pred             ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCC------------cccH
Confidence             489999999976532        2334578999999999999988888899999998643211            1235


Q ss_pred             HHHHHHHHHHHHHH---HcCCcEEEEeCCcccCC
Q 025456          206 LTLIAKLQAEQYIR---KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       206 ~y~~sK~~~e~~~~---~~gi~~~~lrPg~i~~~  236 (252)
                      .|+.+|...+.+.+   ..|+++++|.||.+.+.
T Consensus       156 ~YaAaka~l~~la~~~~~~Gi~v~~I~pg~~~~~  189 (259)
T d2fr1a1         156 GYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGS  189 (259)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC--
T ss_pred             HHHHHHHhHHHHHHHHHhCCCCEEECCCCcccCC
Confidence            68899998887654   47999999999988754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.7e-20  Score=151.98  Aligned_cols=153  Identities=18%  Similarity=0.176  Sum_probs=110.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHH-------HHHHcC-CC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL-------SEAIGD-DS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~-------~~~~~~-~~  136 (252)
                      ++|+|+||||+|+||++++++|+++|++|+++++......       .....+..|..+ .++.       .+.+.. ++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i   72 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------SASVIVKMTDSF-TEQADQVTAEVGKLLGDQKV   72 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------SEEEECCCCSCH-HHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-------cccceeecccCc-HHHHHHHHHHHHHHhCCCCc
Confidence            3799999999999999999999999999999988654321       122334455544 2222       222332 59


Q ss_pred             cEEEEcCCCCCC---------CCCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhh
Q 025456          137 EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (252)
Q Consensus       137 d~vi~~ag~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~  205 (252)
                      |++|||||....         .+|+..+++|+.++.++.+++...  +-++||++||......            ...+.
T Consensus        73 D~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~------------~~~~~  140 (236)
T d1dhra_          73 DAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDG------------TPGMI  140 (236)
T ss_dssp             EEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CTTBH
T ss_pred             eEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCC------------ccCCc
Confidence            999999985321         124456799999999988887432  2268999999853211            22357


Q ss_pred             HHHHHHHHHHHHHHH---------cCCcEEEEeCCcccCCC
Q 025456          206 LTLIAKLQAEQYIRK---------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       206 ~y~~sK~~~e~~~~~---------~gi~~~~lrPg~i~~~~  237 (252)
                      .|..+|++.+.+.+.         .|+++++|.||.+.+++
T Consensus       141 ~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~  181 (236)
T d1dhra_         141 GYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM  181 (236)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc
Confidence            899999999987752         47999999999998865

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.81  E-value=6.7e-20  Score=152.78  Aligned_cols=155  Identities=21%  Similarity=0.263  Sum_probs=121.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh-----hccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-----TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~-----~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .+||||||||||||++|+++|+++|++|++++|+.....     ........+++++++|+.| .+.+.+.+.+ .+++|
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d-~~~~~~~~~~-~~~~~   80 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD-HQRLVDALKQ-VDVVI   80 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSC-HHHHHHHHTT-CSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeeccc-chhhhhhccC-cchhh
Confidence            467999999999999999999999999999999754321     1111124679999999999 8999999999 99999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      ++++...       ...|..++.++++++++.+..++++.||.+++......       +..+...|...|..++++.+.
T Consensus        81 ~~~~~~~-------~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  146 (312)
T d1qyda_          81 SALAGGV-------LSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEH-------ALQPGSITFIDKRKVRRAIEA  146 (312)
T ss_dssp             ECCCCSS-------SSTTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCCC-------CCSSTTHHHHHHHHHHHHHHH
T ss_pred             hhhhhcc-------cccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCccc-------ccchhhhhhHHHHHHHHhhcc
Confidence            9987532       24466678899999998887788888887654432221       233456677889999999999


Q ss_pred             cCCcEEEEeCCcccCC
Q 025456          221 SGINYTIIRPGGLRNE  236 (252)
Q Consensus       221 ~gi~~~~lrPg~i~~~  236 (252)
                      .+++++++||+.++|+
T Consensus       147 ~~~~~~i~r~~~~~g~  162 (312)
T d1qyda_         147 ASIPYTYVSSNMFAGY  162 (312)
T ss_dssp             TTCCBCEEECCEEHHH
T ss_pred             cccceEEeccceeecC
Confidence            9999999999998874

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.80  E-value=5e-19  Score=150.82  Aligned_cols=153  Identities=20%  Similarity=0.211  Sum_probs=118.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      +.|+|+||||||+||++|+++|+++|++|+++.|++++..........+++++++|+.|..+.++.++.+ +|+++++..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~-~~~~~~~~~   80 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEG-AHLAFINTT   80 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTT-CSEEEECCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcC-CceEEeecc
Confidence            4699999999999999999999999999999999876543211113468999999999955567788888 999887754


Q ss_pred             CCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHHcCCc
Q 025456          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGIN  224 (252)
Q Consensus       145 ~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~  224 (252)
                      ..        ...|+..+.+++++++++++.++++.||.........          .....|..+|...+++.++.+++
T Consensus        81 ~~--------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~~~----------~~~~~~~~~k~~~~~~~~~~~~~  142 (350)
T d1xgka_          81 SQ--------AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGP----------WPAVPMWAPKFTVENYVRQLGLP  142 (350)
T ss_dssp             ST--------TSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSS----------CCCCTTTHHHHHHHHHHHTSSSC
T ss_pred             cc--------cchhhhhhhHHHHHHHHhCCCceEEEeeccccccCCc----------ccchhhhhhHHHHHHHHHhhccC
Confidence            21        2457888999999999999888888888643322111          11233457888899999999999


Q ss_pred             EEEEeCCcccCC
Q 025456          225 YTIIRPGGLRNE  236 (252)
Q Consensus       225 ~~~lrPg~i~~~  236 (252)
                      ++++||+.+++.
T Consensus       143 ~~~vr~~~~~~~  154 (350)
T d1xgka_         143 STFVYAGIYNNN  154 (350)
T ss_dssp             EEEEEECEEGGG
T ss_pred             ceeeeeceeecc
Confidence            999999987654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.78  E-value=4.7e-20  Score=149.17  Aligned_cols=153  Identities=15%  Similarity=0.110  Sum_probs=108.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC------hHHHHHHHc-CCCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG------SAKLSEAIG-DDSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~------~~~~~~~~~-~~~d~  138 (252)
                      ..+|+||||+++||++++++|+++|++|++++|++....       .....+.+|+.+.      .+.+.+.+. +++|+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~   74 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   74 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc-------cccceeccccCchhHHHHHHHHHHHHhcCCCeeE
Confidence            467899999999999999999999999999999865322       1223334454441      122222232 25999


Q ss_pred             EEEcCCCCCCC---------CCCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcchhccchhhHH
Q 025456          139 VVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (252)
Q Consensus       139 vi~~ag~~~~~---------~~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y  207 (252)
                      ||||||.....         +++..+++|+.++.++.+++...  +-+++|++||...+..            ...+..|
T Consensus        75 linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~------------~~~~~~Y  142 (235)
T d1ooea_          75 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP------------TPSMIGY  142 (235)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CTTBHHH
T ss_pred             EEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCC------------cccccch
Confidence            99999964311         23345789999998888887432  2268999999853321            2235789


Q ss_pred             HHHHHHHHHHHHH---------cCCcEEEEeCCcccCCC
Q 025456          208 LIAKLQAEQYIRK---------SGINYTIIRPGGLRNEP  237 (252)
Q Consensus       208 ~~sK~~~e~~~~~---------~gi~~~~lrPg~i~~~~  237 (252)
                      ..+|++.+.+.+.         .+++++.|.||.+.++.
T Consensus       143 ~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~  181 (235)
T d1ooea_         143 GMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM  181 (235)
T ss_dssp             HHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcc
Confidence            9999999987652         37899999999998864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.77  E-value=9.9e-19  Score=144.68  Aligned_cols=151  Identities=21%  Similarity=0.270  Sum_probs=116.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc-----c-ccCCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----L-SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~-----~-~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      .|+|||||||||||++++++|+++|++|++++|+.......     + .....+++++.+|+.+ ...+.+.+.+ .+.|
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~-~~~v   80 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDD-HASLVEAVKN-VDVV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTC-HHHHHHHHHT-CSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeeccc-chhhhhhhhh-ceee
Confidence            68999999999999999999999999999999986543211     0 1123578999999999 8888889988 9999


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (252)
                      ||+++..           +..++.+++++++..++.++++.||...+.....        .......+...+...+.+++
T Consensus        81 i~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  141 (307)
T d1qyca_          81 ISTVGSL-----------QIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVH--------AVEPAKSVFEVKAKVRRAIE  141 (307)
T ss_dssp             EECCCGG-----------GSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCC--------CCTTHHHHHHHHHHHHHHHH
T ss_pred             eeccccc-----------ccchhhHHHHHHHHhccccceeeecccccccccc--------ccccccccccccccccchhh
Confidence            9998642           3445678889999999888999888643322111        12233456667778888888


Q ss_pred             HcCCcEEEEeCCcccCCC
Q 025456          220 KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       220 ~~gi~~~~lrPg~i~~~~  237 (252)
                      +.+++++++||+.++|+.
T Consensus       142 ~~~~~~~i~r~~~v~g~~  159 (307)
T d1qyca_         142 AEGIPYTYVSSNCFAGYF  159 (307)
T ss_dssp             HHTCCBEEEECCEEHHHH
T ss_pred             ccCCCceecccceecCCC
Confidence            899999999999998753

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.75  E-value=7.7e-18  Score=139.36  Aligned_cols=156  Identities=21%  Similarity=0.148  Sum_probs=105.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhh-hh---ccc-cCCCCeEEE-----------------EeeCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT---TLS-KDNPSLQIV-----------------KADVTE  123 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~~---~~~-~~~~~~~~i-----------------~~Dl~d  123 (252)
                      +++++||||+++||++++++|+++|++|++.+|+.... ++   .+. ........+                 .+|+++
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence            57999999999999999999999999999888765432 21   111 122233333                 455776


Q ss_pred             ChHHHHHHHc------CCCcEEEEcCCCCCCC--------CCC--------------CcceehHHHHHHHHHHHHh----
Q 025456          124 GSAKLSEAIG------DDSEAVVCATGFQPGW--------DLF--------------APWKVDNFGTVNLVEACRK----  171 (252)
Q Consensus       124 ~~~~~~~~~~------~~~d~vi~~ag~~~~~--------~~~--------------~~~~~n~~g~~~ll~~~~~----  171 (252)
                       .+++++.++      +++|++|||||.....        +++              ..+.+|+.+++.+.+++.+    
T Consensus        82 -~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~  160 (284)
T d1e7wa_          82 -FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG  160 (284)
T ss_dssp             -HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence             555555442      1499999999975421        111              1357888888888877532    


Q ss_pred             ------cCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCccc
Q 025456          172 ------RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLR  234 (252)
Q Consensus       172 ------~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~  234 (252)
                            .+..++|+++|.....            +...+..|..+|++.+.+.+       ++||++++|.||.+.
T Consensus       161 ~~~~~~~~~~~ii~~~s~~~~~------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~  224 (284)
T d1e7wa_         161 TPAKHRGTNYSIINMVDAMTNQ------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV  224 (284)
T ss_dssp             SCGGGSCSCEEEEEECCTTTTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBC
T ss_pred             hHHHhcCCCCcccccccccccC------------CccceeeeccccccchhhhHHHHHHhCCcccccccccccccc
Confidence                  1234678887763211            11235789999999987765       469999999999754

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.4e-18  Score=142.90  Aligned_cols=161  Identities=19%  Similarity=0.208  Sum_probs=107.6

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchh--hhhccccCCCCeEEEEeeCCCChHHHHHHHcC----CCcEEEE
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK--AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----DSEAVVC  141 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~----~~d~vi~  141 (252)
                      ||||||+||||++|+++|+++|+ +|+++++-...  ......  ...     .|..+..+........    .+++|+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~   74 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNI-----ADYMDKEDFLIQIMAGEEFGDVEAIFH   74 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHT--SCC-----SEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccc--cch-----hhhccchHHHHHHhhhhcccchhhhhh
Confidence            89999999999999999999996 68887532221  111111  111     1222211222222221    3889999


Q ss_pred             cCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH
Q 025456          142 ATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (252)
Q Consensus       142 ~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (252)
                      +|+....  .+.....+.|+.++.+++++++..++ ++++.||..++........ +...+..+...|+.+|..+|.+++
T Consensus        75 ~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i-~~v~~ss~~~~~~~~~~~~-~~~~~~~~~~~Y~~~K~~~e~~~~  152 (307)
T d1eq2a_          75 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFI-ESREYEKPLNVYGYSKFLFDEYVR  152 (307)
T ss_dssp             CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBC-SSGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccccccccccccccccccccccc-ccccccccccccccccccc-ccccccccccccccccchhhhhcc
Confidence            9875442  23334567889999999999999998 4666666666554433222 222345667889999999998775


Q ss_pred             ----HcCCcEEEEeCCcccCCCC
Q 025456          220 ----KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       220 ----~~gi~~~~lrPg~i~~~~~  238 (252)
                          +++++++++||++++|+..
T Consensus       153 ~~~~~~~~~~~~~r~~~vyGp~~  175 (307)
T d1eq2a_         153 QILPEANSQIVGFRYFNVYGPRE  175 (307)
T ss_dssp             HHGGGCSSCEEEEEECEEESSSC
T ss_pred             ccccccccccccccceeEeeccc
Confidence                4689999999999999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.6e-18  Score=141.74  Aligned_cols=163  Identities=18%  Similarity=0.306  Sum_probs=114.1

Q ss_pred             CCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCchhhhhc--cccCCCCeEEEEeeCCCChHHHHHHHcC-----
Q 025456           64 VKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKTT--LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (252)
Q Consensus        64 ~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----  134 (252)
                      +++|+++||||+|  +||+++++.|+++|++|++.+|+.+..+..  +.........+..|+.+ ..++.+.+..     
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE-DASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccch-HHHHHHHHHHhhhcc
Confidence            5799999999999  899999999999999999999985533221  11123456777889888 5544444321     


Q ss_pred             -CCcEEEEcCCCCCCCC-------------CCCcceehHHHHHHHHHHHHhc--CCCEEEEEccceeeccCCCCCCCcch
Q 025456          135 -DSEAVVCATGFQPGWD-------------LFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       135 -~~d~vi~~ag~~~~~~-------------~~~~~~~n~~g~~~ll~~~~~~--~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                       ++|++|||++......             +...+.+|+.+...+++++...  +-+.+|++||.....           
T Consensus        82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~-----------  150 (258)
T d1qsga_          82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-----------  150 (258)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred             cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc-----------
Confidence             4899999998654211             1223456666777777766432  224688888874211           


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPT  239 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~~  239 (252)
                       +...+..|..+|++.+.+.+       ++||++++|+||.+.++...
T Consensus       151 -~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~  197 (258)
T d1qsga_         151 -AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAAS  197 (258)
T ss_dssp             -BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGG
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccc
Confidence             11224679999999998765       36899999999999988643

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=6.7e-18  Score=136.38  Aligned_cols=150  Identities=19%  Similarity=0.154  Sum_probs=108.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-----CCcEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-----DSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-----~~d~vi  140 (252)
                      .|+++||||+++||++++++|+++|++|++++|+.+.         .+...+++|+++ .....+....     ..+.++
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~---------~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~   70 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG---------EDLIYVEGDVTR-EEDVRRAVARAQEEAPLFAVV   70 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS---------SSSEEEECCTTC-HHHHHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc---------ccceEeeccccc-hhhhHHHHHhhhccccccchh
Confidence            3899999999999999999999999999999997642         346678899988 5444333321     255666


Q ss_pred             EcCCCCCC------------CCCCCcceehHHHHHHHHHHHHh----------cCCCEEEEEccceeeccCCCCCCCcch
Q 025456          141 CATGFQPG------------WDLFAPWKVDNFGTVNLVEACRK----------RGVNRFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       141 ~~ag~~~~------------~~~~~~~~~n~~g~~~ll~~~~~----------~~~~~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                      ++++....            ..+++.+++|+.+...++..+..          .+.++||++||...+..          
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~----------  140 (241)
T d1uaya_          71 SAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG----------  140 (241)
T ss_dssp             ECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC----------
T ss_pred             hhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccC----------
Confidence            66553221            12334578888888877776522          23468999999854321          


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~  237 (252)
                        ...+..|..+|++.+.+.+       ++||++++|.||.+.++.
T Consensus       141 --~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~  184 (241)
T d1uaya_         141 --QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPL  184 (241)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHH
T ss_pred             --CCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccc
Confidence              2235789999999987765       469999999999998864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.70  E-value=1.5e-17  Score=136.51  Aligned_cols=161  Identities=19%  Similarity=0.202  Sum_probs=105.5

Q ss_pred             cCCCcEEEEEcCC--ChHHHHHHHHHHHCCCeEEEeecCchhhhh-ccccCCCCeEEEEeeCCCChHHHH-------HHH
Q 025456           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-TLSKDNPSLQIVKADVTEGSAKLS-------EAI  132 (252)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~i~~Dl~d~~~~~~-------~~~  132 (252)
                      .+++|+++||||+  .+||++++++|+++|++|++.+|+..+..+ ..+....+...+++|+++ .+++.       +.+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~-~~~~~~~~~~v~~~~   81 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN-EEHLASLAGRVTEAI   81 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeeccc-ccccccccchhhhcc
Confidence            4679999999954  589999999999999999999998876533 223244567889999998 54333       333


Q ss_pred             cC--CCcEEEEcCCCCCCC--CCCCc-----------ceehHHHHHHHHHHHHhcC-CCEEEEEccceeeccCCCCCCCc
Q 025456          133 GD--DSEAVVCATGFQPGW--DLFAP-----------WKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNP  196 (252)
Q Consensus       133 ~~--~~d~vi~~ag~~~~~--~~~~~-----------~~~n~~g~~~ll~~~~~~~-~~~~v~~SS~~v~~~~~~~~~~~  196 (252)
                      ..  ++|+++||+|.....  .....           +.+|............... ...+++++|.....         
T Consensus        82 ~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~---------  152 (268)
T d2h7ma1          82 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR---------  152 (268)
T ss_dssp             CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---------
T ss_pred             ccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc---------
Confidence            22  489999999975411  11111           2334444444444443221 12344444432111         


Q ss_pred             chhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCC
Q 025456          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~  236 (252)
                         ....+..|+.+|.+.+.+.+       +.||++++|.||.+.++
T Consensus       153 ---~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~  196 (268)
T d2h7ma1         153 ---AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL  196 (268)
T ss_dssp             ---CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH
T ss_pred             ---cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCCh
Confidence               11234679999999988765       36899999999999875

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.70  E-value=5.2e-17  Score=133.72  Aligned_cols=163  Identities=15%  Similarity=0.215  Sum_probs=104.3

Q ss_pred             cCCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCchhhhh--ccccCCCCeEEEEeeCCCChHHHHHHHc-----
Q 025456           63 SVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKT--TLSKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-----  133 (252)
                      .+++|++|||||+|  +||.+++++|+++|++|++++|+.+..+.  .+.+......++..|+++ .+++.+.+.     
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~   80 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK-EEHFKSLYNSVKKD   80 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccc-hhhHHHHHHHHHHH
Confidence            35799999999877  89999999999999999999998642221  112234567788999998 555544442     


Q ss_pred             -CCCcEEEEcCCCCCCCC--------CCCcceehH----HHHHHHHHHHHhc-CCC-EEEEEccceeeccCCCCCCCcch
Q 025456          134 -DDSEAVVCATGFQPGWD--------LFAPWKVDN----FGTVNLVEACRKR-GVN-RFILISSILVNGAAMGQILNPAY  198 (252)
Q Consensus       134 -~~~d~vi~~ag~~~~~~--------~~~~~~~n~----~g~~~ll~~~~~~-~~~-~~v~~SS~~v~~~~~~~~~~~~~  198 (252)
                       +++|++|||+|......        ....+..+.    .+...+.....+. +.+ .++.+|+.+...           
T Consensus        81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~-----------  149 (274)
T d2pd4a1          81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK-----------  149 (274)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred             cCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc-----------
Confidence             14999999999754211        111111111    1222333333222 222 455555543221           


Q ss_pred             hccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                       +......|+.+|.+.+.+.+       ..|+++++|.||.+.+++.
T Consensus       150 -~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~  195 (274)
T d2pd4a1         150 -YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLAS  195 (274)
T ss_dssp             -BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTG
T ss_pred             -ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccc
Confidence             11234678899999887765       3689999999999998754

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.70  E-value=2.2e-16  Score=129.21  Aligned_cols=159  Identities=18%  Similarity=0.157  Sum_probs=102.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh-----ccccCCCCeEEEEeeCCCC---hHH-------HHHH
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-----TLSKDNPSLQIVKADVTEG---SAK-------LSEA  131 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-----~~~~~~~~~~~i~~Dl~d~---~~~-------~~~~  131 (252)
                      +++|||||+++||++++++|+++|++|++++|+.++..+     ...........++.|+.+.   .+.       +.+.
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999998765422     1111345677777777552   122       2334


Q ss_pred             HcCCCcEEEEcCCCCCCCCC-----------CC--------cceehHHHHHHHHHHHHhc---------CCCEEEEEccc
Q 025456          132 IGDDSEAVVCATGFQPGWDL-----------FA--------PWKVDNFGTVNLVEACRKR---------GVNRFILISSI  183 (252)
Q Consensus       132 ~~~~~d~vi~~ag~~~~~~~-----------~~--------~~~~n~~g~~~ll~~~~~~---------~~~~~v~~SS~  183 (252)
                      +++ +|++|||||+......           .+        .+..|+.+...........         ....++.+|+.
T Consensus        82 ~g~-iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (266)
T d1mxha_          82 FGR-CDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA  160 (266)
T ss_dssp             HSC-CCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred             hCC-CCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence            445 9999999997543211           11        1233344433333333211         12355566655


Q ss_pred             eeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          184 LVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       184 ~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      ....            +...+..|..+|++.+.+.+       ++||+++.|.||.+.++..
T Consensus       161 ~~~~------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~  210 (266)
T d1mxha_         161 MTDL------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPA  210 (266)
T ss_dssp             GGGS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSS
T ss_pred             cccc------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEecccc
Confidence            3211            12235789999999987764       4699999999999987653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.67  E-value=8e-17  Score=134.00  Aligned_cols=166  Identities=17%  Similarity=0.180  Sum_probs=106.2

Q ss_pred             ccCCCcEEEEEcCCC--hHHHHHHHHHHHCCCeEEEeecCchhhhh-------------cccc-CCCCe-EEEEeeC---
Q 025456           62 VSVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKT-------------TLSK-DNPSL-QIVKADV---  121 (252)
Q Consensus        62 ~~~~~~~vlVtGatG--~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-------------~~~~-~~~~~-~~i~~Dl---  121 (252)
                      .++++|++|||||+|  +||++++++|+++|++|++.+|++.....             .... ..... ....+|.   
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence            567899999999887  99999999999999999999886532110             0000 00111 2233332   


Q ss_pred             -----------------CCC------hHHHHHHHcCCCcEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHH
Q 025456          122 -----------------TEG------SAKLSEAIGDDSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEA  168 (252)
Q Consensus       122 -----------------~d~------~~~~~~~~~~~~d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~  168 (252)
                                       .+.      .+.+.+.+.+ +|++|||||....          ++|...+++|+.+..+++++
T Consensus        84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~-iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~  162 (297)
T d1d7oa_          84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGS-IDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH  162 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSC-EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCC-CcccccccccccccccchhhhhcccccccccchhhhhhhhhhH
Confidence                             110      1233344555 9999999986431          12445678999999999998


Q ss_pred             HHhcC--CCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHH--------HHcCCcEEEEeCCcccCCCC
Q 025456          169 CRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI--------RKSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       169 ~~~~~--~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~--------~~~gi~~~~lrPg~i~~~~~  238 (252)
                      +....  -++++.+++.+.....           ......|..+|.+.+.+.        .++|+++++|.||.+.++..
T Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~  231 (297)
T d1d7oa_         163 FLPIMNPGGASISLTYIASERII-----------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAA  231 (297)
T ss_dssp             HGGGEEEEEEEEEEECGGGTSCC-----------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCS
T ss_pred             HHHHhhcCCcceeeeehhhcccc-----------cccccceecccccccccccccchhccccceEEecccccccccchhh
Confidence            85432  1345555554321110           112356778887776544        24689999999999999875


Q ss_pred             C
Q 025456          239 T  239 (252)
Q Consensus       239 ~  239 (252)
                      .
T Consensus       232 ~  232 (297)
T d1d7oa_         232 K  232 (297)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.63  E-value=1.7e-15  Score=123.25  Aligned_cols=158  Identities=19%  Similarity=0.143  Sum_probs=97.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH----Hc---CCCcE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA----IG---DDSEA  138 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~----~~---~~~d~  138 (252)
                      ||+|+||||+++||++++++|+++|++|++++|+..+.              ..|+.+ .+.....    ..   +.+|+
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~--------------~~d~~~-~~~~~~~~~~~~~~~~~~id~   65 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV--------------IADLST-AEGRKQAIADVLAKCSKGMDG   65 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE--------------ECCTTS-HHHHHHHHHHHHTTCTTCCSE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH--------------HHHhcC-HHHHHHHHHHHHHHhCCCCcE
Confidence            68999999999999999999999999999999875321              346666 3332222    11   14999


Q ss_pred             EEEcCCCCCCC-CCCCcceehHHHHHHHHHHH----HhcCCCEEEEEccceeec-cCCCCCCCc--------------c-
Q 025456          139 VVCATGFQPGW-DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNG-AAMGQILNP--------------A-  197 (252)
Q Consensus       139 vi~~ag~~~~~-~~~~~~~~n~~g~~~ll~~~----~~~~~~~~v~~SS~~v~~-~~~~~~~~~--------------~-  197 (252)
                      ++||||..... .+.....+|..+...+.+..    .+........+++..... .....+...              . 
T Consensus        66 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~  145 (257)
T d1fjha_          66 LVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEH  145 (257)
T ss_dssp             EEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHT
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhc
Confidence            99999976532 23334567777776666554    334444566665542110 000000000              0 


Q ss_pred             hhccchhhHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCC
Q 025456          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP  238 (252)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~gi~~~~lrPg~i~~~~~  238 (252)
                      .........|..+|++.+.+.+       ++||++++|.||.+.++..
T Consensus       146 ~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~  193 (257)
T d1fjha_         146 AGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLL  193 (257)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------
T ss_pred             cCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhH
Confidence            0011224569999999998765       4689999999999988754

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.61  E-value=6.5e-16  Score=130.50  Aligned_cols=159  Identities=14%  Similarity=0.121  Sum_probs=105.0

Q ss_pred             CcEEEEEc--CCChHHHHHHHHHHHCCCeEEEeecCchhhhh------------cccc---CCCCeEEEEe---------
Q 025456           66 QKKIFVAG--ATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT------------TLSK---DNPSLQIVKA---------  119 (252)
Q Consensus        66 ~~~vlVtG--atG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~------------~~~~---~~~~~~~i~~---------  119 (252)
                      +|++||||  ++++||+++++.|+++|++|++..+.......            ....   .........+         
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence            68999999  55799999999999999999998876532210            0000   0111233333         


Q ss_pred             -----------eCCCC--h----HHHHHHHcCCCcEEEEcCCCCCC----------CCCCCcceehHHHHHHHHHHHHhc
Q 025456          120 -----------DVTEG--S----AKLSEAIGDDSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRKR  172 (252)
Q Consensus       120 -----------Dl~d~--~----~~~~~~~~~~~d~vi~~ag~~~~----------~~~~~~~~~n~~g~~~ll~~~~~~  172 (252)
                                 |+++.  .    +.+.+.+++ +|++|||+|....          .+|...+++|+.+..++++++...
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~-iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGK-INMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCC-EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCC-CCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence                       33341  0    223344455 9999999986431          134456789999998888887542


Q ss_pred             --CCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHH--------HcCCcEEEEeCCcccCC
Q 025456          173 --GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR--------KSGINYTIIRPGGLRNE  236 (252)
Q Consensus       173 --~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~--------~~gi~~~~lrPg~i~~~  236 (252)
                        .-+++|.+||.+....   .        .++...|+.+|++.+.+.+        ++||++++|.||.+.|+
T Consensus       161 m~~~GsIv~iss~~~~~~---~--------p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T~  223 (329)
T d1uh5a_         161 MKPQSSIISLTYHASQKV---V--------PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR  223 (329)
T ss_dssp             EEEEEEEEEEECGGGTSC---C--------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCT
T ss_pred             cccccccccceeehhccc---c--------cccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccch
Confidence              2258999988743211   0        1223568899998887654        35999999999999884

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.51  E-value=1.1e-14  Score=113.49  Aligned_cols=83  Identities=29%  Similarity=0.318  Sum_probs=70.6

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcCCCcEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~v  139 (252)
                      .++++|+|+||||+|+||+++++.|+++|++|++++|+.++.++....  ...++.+..+|++| .+++.+.+++ +|+|
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~-iDil   96 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD-DASRAEAVKG-AHFV   96 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS-HHHHHHHTTT-CSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhccc-HHHHHHHhcC-cCee
Confidence            467899999999999999999999999999999999998876543321  12356678899999 8999999998 9999


Q ss_pred             EEcCCCC
Q 025456          140 VCATGFQ  146 (252)
Q Consensus       140 i~~ag~~  146 (252)
                      |||||..
T Consensus        97 in~Ag~g  103 (191)
T d1luaa1          97 FTAGAIG  103 (191)
T ss_dssp             EECCCTT
T ss_pred             eecCccc
Confidence            9999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.66  E-value=1.6e-07  Score=67.55  Aligned_cols=95  Identities=24%  Similarity=0.298  Sum_probs=70.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag~  145 (252)
                      |+|+|.|+ |.+|+.+++.|.++|++|++++++++..++....  .+..++.+|.+| .+.+.++ +.. .|.++-+..-
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~--~~~~vi~Gd~~~-~~~l~~~~i~~-a~~vv~~t~~   75 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE--IDALVINGDCTK-IKTLEDAGIED-ADMYIAVTGK   75 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--CSSEEEESCTTS-HHHHHHTTTTT-CSEEEECCSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh--hhhhhccCcccc-hhhhhhcChhh-hhhhcccCCc
Confidence            68999998 9999999999999999999999999877654321  257899999999 7777766 345 8988865431


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEE
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~  179 (252)
                               -+.|+    .+...+++.+.+++|.
T Consensus        76 ---------d~~N~----~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          76 ---------EEVNL----MSSLLAKSYGINKTIA   96 (132)
T ss_dssp             ---------HHHHH----HHHHHHHHTTCCCEEE
T ss_pred             ---------HHHHH----HHHHHHHHcCCceEEE
Confidence                     13344    3344567778776664

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.59  E-value=3.5e-07  Score=66.76  Aligned_cols=111  Identities=20%  Similarity=0.219  Sum_probs=78.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc-cccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT-LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~-~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ||.|+||+|.+|++++-.|+.+|.  ++++++.+..+.... +. ...-......-+ . ..+..+.+.+ .|+||..+|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~-~~~~~~~~~~~~-~-~~~~~~~~~~-aDivVitag   77 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLS-HIETRATVKGYL-G-PEQLPDCLKG-CDVVVIPAG   77 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHT-TSSSSCEEEEEE-S-GGGHHHHHTT-CSEEEECCS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHh-hhhhhcCCCeEE-c-CCChHHHhCC-CCEEEECCC
Confidence            789999999999999999998874  788888876544321 11 111111112222 2 3556678888 999999999


Q ss_pred             CCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          145 FQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       145 ~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      ...  ..+..+.+..|....+.+++.+++++.+-++.+-|
T Consensus        78 ~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt  117 (144)
T d1mlda1          78 VPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS  117 (144)
T ss_dssp             CCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             cCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            644  34566778999999999999999887655555544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.49  E-value=3.5e-07  Score=68.64  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=58.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .|+|+|.|| |++|+.+++.|.++|++|++++|+.++.++... ..........+..+ .....+.+.. .|.++.+..
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~-~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~i~~~~   76 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA-GVQHSTPISLDVND-DAALDAEVAK-HDLVISLIP   76 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT-TCTTEEEEECCTTC-HHHHHHHHTT-SSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh-cccccccccccccc-hhhhHhhhhc-cceeEeecc
Confidence            589999987 999999999999999999999999998876554 23344555555555 6667777777 888886653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.45  E-value=7.3e-07  Score=65.16  Aligned_cols=108  Identities=16%  Similarity=0.189  Sum_probs=72.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhc---cc---cCCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTT---LS---KDNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~---~~---~~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      +++||.|.|+ |.+|..++..|+.+|  .+|++++++++..+..   +.   .......+...|..        .+.+ .
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~--------~~~~-a   73 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS--------DCKD-A   73 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG--------GGTT-C
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH--------Hhcc-c
Confidence            3679999996 999999999999987  5899999987654311   10   01223344444432        3567 9


Q ss_pred             cEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          137 EAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       137 d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      |+||.++|...  ..+..+.+..|..-...+.+.+++.+.+-++.+-|
T Consensus        74 divvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          74 DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             SEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            99999998654  34556777889998999999999887655555544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.42  E-value=1.7e-06  Score=62.02  Aligned_cols=72  Identities=32%  Similarity=0.317  Sum_probs=58.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHH-HcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~-~~~~~d~vi~~ag  144 (252)
                      |+++|.|+ |.+|+++++.|.++|++|++++.+++..++...   .....+.+|.++ ++.+.++ +.. +|.||-+.+
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~---~~~~~~~gd~~~-~~~l~~a~i~~-a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS---YATHAVIANATE-ENELLSLGIRN-FEYVIVAIG   73 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT---TCSEEEECCTTC-TTHHHHHTGGG-CSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH---hCCcceeeeccc-chhhhccCCcc-ccEEEEEcC
Confidence            56888987 999999999999999999999999988776532   456778899999 7777766 566 898886654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.31  E-value=4.7e-06  Score=60.85  Aligned_cols=107  Identities=20%  Similarity=0.231  Sum_probs=74.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---ccc----CCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSK----DNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      .++||.|+|+ |.+|..++..|+.+|.  ++++++++++..+..   +.+    ......+...|.        +.+.+ 
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--------~~l~d-   74 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--------DDCRD-   74 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--------GGTTT-
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--------HHhcc-
Confidence            4689999997 9999999999998874  799999887664311   110    122334433332        24667 


Q ss_pred             CcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .|+||.++|...  ..+..+.+..|..-...+.+.+++.+.+ .++.+|
T Consensus        75 aDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt  123 (148)
T d1ldna1          75 ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (148)
T ss_dssp             CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             ceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence            999999998754  3445566788888888899998887654 444443

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.28  E-value=5.8e-06  Score=60.09  Aligned_cols=108  Identities=14%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchh--hh----hcc---ccCCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDK--AK----TTL---SKDNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~--~~----~~~---~~~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      |||.|+||+|.+|..++..|+.+|  .++.+++++++.  .+    ++.   .....+.++...--.|     .+.+.+ 
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d-----~~~l~~-   74 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN-----LRIIDE-   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC-----GGGGTT-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch-----HHHhcc-
Confidence            579999999999999999999988  489988887532  11    111   1112233332221112     135667 


Q ss_pred             CcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEE
Q 025456          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (252)
Q Consensus       136 ~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~  180 (252)
                      .|+||.+||...  ..+..+.++.|..-...+.+.+++.+-+.++.+
T Consensus        75 aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV  121 (145)
T d1hyea1          75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI  121 (145)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             ceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence            999999999754  234455678899989999999988765555444

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.25  E-value=5.1e-07  Score=68.48  Aligned_cols=40  Identities=28%  Similarity=0.458  Sum_probs=36.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~  106 (252)
                      |||.|+||+|.+|++|++.|+++|++|++.+|++++.+..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAK   40 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            5788999999999999999999999999999998876543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=4.5e-06  Score=60.72  Aligned_cols=110  Identities=19%  Similarity=0.161  Sum_probs=71.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHH-CC--CeEEEeecCchhhhh--ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLA-KG--FAVKAGVRDLDKAKT--TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~-~G--~~V~~~~r~~~~~~~--~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      +||.|+|++|.+|++++-.|+. .+  .++.+++..+.....  .+.+..........  .. .+. .+.+.+ .|+||.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~--~~-~~~-~~~~~~-aDvvvi   75 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF--SG-EDA-TPALEG-ADVVLI   75 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEE--CS-SCC-HHHHTT-CSEEEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEE--Ec-CCC-ccccCC-CCEEEE
Confidence            5899999999999999988764 34  688888875422111  11111111111111  11 111 246778 999999


Q ss_pred             cCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCE-EEEEc
Q 025456          142 ATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNR-FILIS  181 (252)
Q Consensus       142 ~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~-~v~~S  181 (252)
                      ++|...  ..+..+.+..|..-.+.+.+.+.+.+.+. ++.+|
T Consensus        76 taG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt  118 (145)
T d2cmda1          76 SAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT  118 (145)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence            999754  34566778899999999999998876544 44444

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.18  E-value=2.5e-06  Score=64.49  Aligned_cols=103  Identities=11%  Similarity=0.046  Sum_probs=66.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      ++.+|+|+||+|++|...++.....|++|+++++++++.+.... ......   .|-.++  .+.+.+...+ .+|+||+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~-~Ga~~v---i~~~~~~~~~~~~~~~~~~Gvd~v~D  104 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGFDAA---FNYKTVNSLEEALKKASPDGYDCYFD  104 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSEE---EETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh-hhhhhh---cccccccHHHHHHHHhhcCCCceeEE
Confidence            48999999999999999999888899999999998876554332 222222   233331  2344444433 4999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeec
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~  187 (252)
                      +.|..              .....++.++..  ++++.++....|+
T Consensus       105 ~vG~~--------------~~~~~~~~l~~~--G~~v~~G~~~~~~  134 (182)
T d1v3va2         105 NVGGE--------------FLNTVLSQMKDF--GKIAICGAISVYN  134 (182)
T ss_dssp             SSCHH--------------HHHHHGGGEEEE--EEEEECCCGGGTT
T ss_pred             ecCch--------------hhhhhhhhccCC--CeEEeecceeecc
Confidence            98721              012233333333  4788877665444

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.04  E-value=4.9e-05  Score=52.51  Aligned_cols=97  Identities=15%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      .++++++|+|+|| |-+|..-++.|++.|.+|++++.........+. ...+++++..+..+ .     .+.+ .+.|+.
T Consensus         8 l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~-----dl~~-~~lv~~   78 (113)
T d1pjqa1           8 CQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQFTVWA-NEGMLTLVEGPFDE-T-----LLDS-CWLAIA   78 (113)
T ss_dssp             ECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHH-TTTSCEEEESSCCG-G-----GGTT-CSEEEE
T ss_pred             EEeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChHHHHHH-hcCCceeeccCCCH-H-----HhCC-CcEEee
Confidence            3567999999997 899999999999999999998876544332222 23567777766544 2     3556 888886


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +.+-             -.-...+.+.|++.++  +|++..
T Consensus        79 at~d-------------~~~n~~i~~~a~~~~i--lVNv~D  104 (113)
T d1pjqa1          79 ATDD-------------DTVNQRVSDAAESRRI--FCNVVD  104 (113)
T ss_dssp             CCSC-------------HHHHHHHHHHHHHTTC--EEEETT
T ss_pred             cCCC-------------HHHHHHHHHHHHHcCC--EEEeCC
Confidence            6431             1123467788888874  788653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.04  E-value=2.1e-05  Score=57.09  Aligned_cols=105  Identities=21%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhc---c----ccCCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTT---L----SKDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~---~----~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      |||.|+|+ |.+|..++-.|+.+|  .+++++++++++.+..   +    ........+...|.        +.+.+ .|
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~--------~~l~~-ad   71 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--------AALAD-AD   71 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--------GGGTT-CS
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH--------HHhcc-cc
Confidence            78999995 999999999999887  4899888887654311   1    11122333333332        23567 99


Q ss_pred             EEEEcCCCCC------CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          138 AVVCATGFQP------GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~------~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      +||.+||...      ..+..+.++.|..-...+.+.+++.+.+-++.+-
T Consensus        72 iVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivv  121 (146)
T d1hyha1          72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI  121 (146)
T ss_dssp             EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             EEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            9999999643      2244556778888889999999888754444443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=8.2e-06  Score=60.95  Aligned_cols=74  Identities=24%  Similarity=0.271  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|+||+|.+|...++.+...|++|+++++++++.+.... ....  . ..|..+ .........+ +|+||.+.|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~-lGa~--~-~i~~~~-~~~~~~~~~g-~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-LGAE--E-AATYAE-VPERAKAWGG-LDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-TTCS--E-EEEGGG-HHHHHHHTTS-EEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc-cccc--e-eeehhh-hhhhhhcccc-ccccccccc
Confidence            47899999999999999999888899999999998776554332 2222  1 124444 2222223345 999999876

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=1.9e-05  Score=58.10  Aligned_cols=109  Identities=18%  Similarity=0.213  Sum_probs=73.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---ccc----CCCCeEEEEeeCCCChHHHHHHHc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSK----DNPSLQIVKADVTEGSAKLSEAIG  133 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~----~~~~~~~i~~Dl~d~~~~~~~~~~  133 (252)
                      .++..+|.|+|+ |.+|..++..|+.+|.  ++++++++++..+..   +.+    ..........|.        +.+.
T Consensus        16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~--------~~~~   86 (159)
T d2ldxa1          16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY--------NVSA   86 (159)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG--------GGGT
T ss_pred             cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch--------hhhc
Confidence            345678999996 9999999999999874  799999887654311   110    111222222232        2356


Q ss_pred             CCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCE-EEEEc
Q 025456          134 DDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNR-FILIS  181 (252)
Q Consensus       134 ~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~-~v~~S  181 (252)
                      + .|+||.+||...  ..+..+.++.|..-...+...+++.+.+- ++.+|
T Consensus        87 ~-adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          87 N-SKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             T-EEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             c-ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            6 999999998654  34566778889988888888888776544 44444

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.3e-06  Score=61.68  Aligned_cols=98  Identities=15%  Similarity=0.225  Sum_probs=64.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+|+|+||+|.+|...++.+...|++|+++++++++.+...+ .... ++  .|..+.  .+.+.+...+ .+|+||.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~-~Ga~-~v--i~~~~~~~~~~i~~~t~~~g~d~v~d  103 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ-NGAH-EV--FNHREVNYIDKIKKYVGEKGIDIIIE  103 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCS-EE--EETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccc-cCcc-cc--cccccccHHHHhhhhhccCCceEEee
Confidence            47899999999999999999888899999999988766544322 2211 22  366551  2344444444 4999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +.|..              .....++.++..  +++|.++.
T Consensus       104 ~~g~~--------------~~~~~~~~l~~~--G~iv~~G~  128 (174)
T d1yb5a2         104 MLANV--------------NLSKDLSLLSHG--GRVIVVGS  128 (174)
T ss_dssp             SCHHH--------------HHHHHHHHEEEE--EEEEECCC
T ss_pred             cccHH--------------HHHHHHhccCCC--CEEEEEec
Confidence            87621              122334444443  48888764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.01  E-value=3.4e-05  Score=56.77  Aligned_cols=107  Identities=20%  Similarity=0.168  Sum_probs=73.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---ccc----CCCCeEEEEeeCCCChHHHHHHHcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSK----DNPSLQIVKADVTEGSAKLSEAIGDD  135 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~  135 (252)
                      ..+||.|.|+ |.+|..++-.|+.+|.  ++++++++++..+..   +.+    ..........|.        +.+.+ 
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~--------~~~~~-   88 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY--------SVTAN-   88 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG--------GGGTT-
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch--------hhccc-
Confidence            4679999996 9999999999999985  799999887654311   110    111222112222        23567 


Q ss_pred             CcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEc
Q 025456          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (252)
Q Consensus       136 ~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~S  181 (252)
                      .|+||..||...  ..+..+.+..|..-...+.+.+++.+.+ .++.+|
T Consensus        89 adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt  137 (160)
T d1i0za1          89 SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS  137 (160)
T ss_dssp             CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             ccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            999999999654  3455566788888889999999887654 445544

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.00  E-value=3.3e-05  Score=56.55  Aligned_cols=110  Identities=12%  Similarity=0.128  Sum_probs=73.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccc---c----CCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLS---K----DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~---~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      +.+||.|.|+ |.+|+.++..|+..+ .++++++.+++..+....   .    .........      ....++++.+ .
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~-a   77 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA------EYSYEAALTG-A   77 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE------ECSHHHHHTT-C
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec------cCchhhhhcC-C
Confidence            5689999997 999999998888777 489988888765432110   0    111111111      1123456778 9


Q ss_pred             cEEEEcCCCCCC-------CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          137 EAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       137 d~vi~~ag~~~~-------~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      |+||.++|....       .+..+.+..|..-...+++.+++.+.+-++.+-|
T Consensus        78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            999999986542       1344567788888999999998887655555444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.6e-05  Score=52.05  Aligned_cols=87  Identities=16%  Similarity=0.279  Sum_probs=59.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh-hccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ++++|+|+|.|. |..|..+++.|.++|++|++.+.+..... +.+   .....+...+..  .    ..+.+ +|.||-
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~---~~~~~~~~~~~~--~----~~~~~-~d~vi~   70 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKL---PEAVERHTGSLN--D----EWLMA-ADLIVA   70 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGS---CTTSCEEESBCC--H----HHHHH-CSEEEE
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHH---hhccceeecccc--h----hhhcc-CCEEEE
Confidence            357899999998 89999999999999999999987654322 222   233444444331  1    23456 899998


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCC
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      .-|+...              ..+++.+++.++
T Consensus        71 SPGi~~~--------------~~~~~~a~~~gi   89 (93)
T d2jfga1          71 SPGIALA--------------HPSLSAAADAGI   89 (93)
T ss_dssp             CTTSCTT--------------SHHHHHHHHTTC
T ss_pred             CCCCCCC--------------CHHHHHHHHcCC
Confidence            8776432              146777888886

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.98  E-value=2.8e-05  Score=57.67  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=62.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC-ChHHHHHHH----cCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-GSAKLSEAI----GDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d-~~~~~~~~~----~~~~d~v  139 (252)
                      .+.+|+|+| +|.+|...++.+...|.+|+++++++++.+.... ......+ ..|-.+ +.+.+.+.+    .+.+|+|
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~-~ga~~~~-~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-CGADVTL-VVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCSEEE-ECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH-cCCcEEE-eccccccccchhhhhhhcccccCCcee
Confidence            478999997 6999999998888899999999999887654322 2222222 222222 123332322    2249999


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      |.++|..             ......++.++..  +++++++.
T Consensus       103 id~~g~~-------------~~~~~a~~~~~~~--G~iv~~G~  130 (170)
T d1e3ja2         103 IDCSGNE-------------KCITIGINITRTG--GTLMLVGM  130 (170)
T ss_dssp             EECSCCH-------------HHHHHHHHHSCTT--CEEEECSC
T ss_pred             eecCCCh-------------HHHHHHHHHHhcC--CceEEEec
Confidence            9998732             1223344545544  48888763

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.96  E-value=6.7e-06  Score=61.80  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=61.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~a  143 (252)
                      ++.+|||+||+|++|...++.+...|.+|+++++++++.+.... ......+   |-.+..++..+...+ .+|+||.+.
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~-lGa~~vi---~~~~~~~~~~~~~~~~gvD~vid~v  106 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-LGAKEVL---AREDVMAERIRPLDKQRWAAAVDPV  106 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-TTCSEEE---ECC---------CCSCCEEEEEECS
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh-cccceee---ecchhHHHHHHHhhccCcCEEEEcC
Confidence            47899999999999999999888899999999998877654332 2222221   322211222233332 599999998


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      |...              ....++.++..  ++++.++..
T Consensus       107 gg~~--------------~~~~l~~l~~~--Griv~~G~~  130 (176)
T d1xa0a2         107 GGRT--------------LATVLSRMRYG--GAVAVSGLT  130 (176)
T ss_dssp             TTTT--------------HHHHHHTEEEE--EEEEECSCC
T ss_pred             Cchh--------------HHHHHHHhCCC--ceEEEeecc
Confidence            7321              12333334443  488888765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=7.9e-06  Score=61.48  Aligned_cols=99  Identities=14%  Similarity=0.117  Sum_probs=65.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      ++.+|+|+||+|.+|...++.+...|.+|+++++++++.+.... ..  ++. ..|..++  .+.+.+...+ .+|++|.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~-~G--a~~-vi~~~~~~~~~~v~~~t~~~g~d~v~d  100 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR-LG--VEY-VGDSRSVDFADEILELTDGYGVDVVLN  100 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT-TC--CSE-EEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc-cc--ccc-cccCCccCHHHHHHHHhCCCCEEEEEe
Confidence            37899999999999999999888889999999998776543332 22  222 2354552  2445554443 4999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +.|..              ....+++.++..  +++|.++..
T Consensus       101 ~~g~~--------------~~~~~~~~l~~~--G~~v~~G~~  126 (183)
T d1pqwa_         101 SLAGE--------------AIQRGVQILAPG--GRFIELGKK  126 (183)
T ss_dssp             CCCTH--------------HHHHHHHTEEEE--EEEEECSCG
T ss_pred             cccch--------------HHHHHHHHhcCC--CEEEEEccC
Confidence            98721              122334444443  488887644

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.94  E-value=2.9e-05  Score=56.00  Aligned_cols=105  Identities=14%  Similarity=0.079  Sum_probs=70.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCc--hhhh----hccc--cCCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDL--DKAK----TTLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~--~~~~----~~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      ||.|+||+|.+|..++-.|+.+|.  ++++++.+.  +..+    ++..  .......+...|..        .+.+ .|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~--------~~~~-aD   72 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE--------DTAG-SD   72 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG--------GGTT-CS
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH--------Hhhh-cC
Confidence            789999999999999999999874  788777532  2221    1110  02234444444322        2457 99


Q ss_pred             EEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCE-EEEEc
Q 025456          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNR-FILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~-~v~~S  181 (252)
                      +||.+||...  ..+..+.++.|..-.+.+.+.+++.+.+- ++.+|
T Consensus        73 iVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          73 VVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             EEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence            9999999654  23445667889988999999998886544 44443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=2.1e-05  Score=56.69  Aligned_cols=106  Identities=17%  Similarity=0.143  Sum_probs=71.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhccc------cCCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLS------KDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~------~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      +||.|.|+ |.+|..++..|+.++  .++.++++++++.+....      .......+...|.        +.+.+ .|+
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~--------~~~~~-adi   70 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY--------ADLKG-SDV   70 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG--------GGGTT-CSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH--------HHhcC-CCE
Confidence            58889996 999999999888876  489999988765532110      0122334433332        23667 999


Q ss_pred             EEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       139 vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      ||.++|....  .+..+.+..|..-.+.+.+.+++.+.+-++.+-|
T Consensus        71 vvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence            9999997553  2333556778888888888888876555555433

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=5.1e-05  Score=54.96  Aligned_cols=87  Identities=13%  Similarity=0.057  Sum_probs=53.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC----CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG----FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ||+|.|.||||++|+.+++.|+++.    .+++.+.++......... ...  .....++.+ .    ..+.+ +|++|.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~-~~~--~~~~~~~~~-~----~~~~~-~DivF~   71 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSF-GGT--TGTLQDAFD-L----EALKA-LDIIVT   71 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGG-GTC--CCBCEETTC-H----HHHHT-CSEEEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccc-cCC--ceeeecccc-h----hhhhc-CcEEEE
Confidence            5789999999999999999988764    256666655433222111 011  111223333 2    23567 999999


Q ss_pred             cCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCC
Q 025456          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN  175 (252)
Q Consensus       142 ~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~  175 (252)
                      +++-              .-...+...+.+.|.+
T Consensus        72 a~~~--------------~~s~~~~~~~~~~g~~   91 (146)
T d1t4ba1          72 CQGG--------------DYTNEIYPKLRESGWQ   91 (146)
T ss_dssp             CSCH--------------HHHHHHHHHHHHTTCC
T ss_pred             ecCc--------------hHHHHhhHHHHhcCCC
Confidence            8852              2255666777777764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.92  E-value=1.1e-05  Score=59.63  Aligned_cols=73  Identities=27%  Similarity=0.393  Sum_probs=56.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ++++++|+|.|+ |.+|+.+++.|...|. ++++..|+.++..++....  +.+.     .+ .+++.+.+.. +|+||+
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~--~~~~-----~~-~~~~~~~l~~-~Divi~   90 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL--GGEA-----VR-FDELVDHLAR-SDVVVS   90 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH--TCEE-----CC-GGGHHHHHHT-CSEEEE
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh--hccc-----cc-chhHHHHhcc-CCEEEE
Confidence            567899999997 9999999999999997 6999999887776544321  1222     12 4557778888 999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      +.+.
T Consensus        91 atss   94 (159)
T d1gpja2          91 ATAA   94 (159)
T ss_dssp             CCSS
T ss_pred             ecCC
Confidence            9874

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.91  E-value=3.6e-06  Score=61.94  Aligned_cols=110  Identities=13%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC----e---EEEee--cCchhhhhc---cc-cCCCCeEEEEeeCCCChHHHHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF----A---VKAGV--RDLDKAKTT---LS-KDNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~----~---V~~~~--r~~~~~~~~---~~-~~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      -++|.|+||+|++|++++-.|+..+.    +   ..++.  +..+..+..   +. ........+...     +...+.+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~   78 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEAT-----DDPKVAF   78 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-----SCHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccC-----Cchhhhc
Confidence            36999999999999999999987652    1   12221  222222211   11 011233333332     2234678


Q ss_pred             cCCCcEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhc-CCC-EEEEEc
Q 025456          133 GDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKR-GVN-RFILIS  181 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~-~~~-~~v~~S  181 (252)
                      .+ .|+||.++|....  .+..+.+..|..-...+.+.+++. +.. .++.+|
T Consensus        79 ~~-advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs  130 (154)
T d1y7ta1          79 KD-ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG  130 (154)
T ss_dssp             TT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cc-ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            88 9999999997653  344456778888888999998875 322 444444

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.90  E-value=3.5e-05  Score=55.60  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=70.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhc---ccc----CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTT---LSK----DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~---~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      +||.|+|| |.+|..++..|+..|  .++++++++++..+..   +..    .....++...+  | .    +.+.+ .|
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~--~-~----~~~~d-ad   71 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSN--D-Y----ADTAN-SD   71 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEES--C-G----GGGTT-CS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecC--C-H----HHhcC-Ce
Confidence            57899996 999999999999987  5899999887654321   100    12233443221  2 1    24667 99


Q ss_pred             EEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEE
Q 025456          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (252)
Q Consensus       138 ~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~  180 (252)
                      +||.++|...  ..+..+.+..|..-...+.+.+++.+.+-++.+
T Consensus        72 vvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aiviv  116 (142)
T d1guza1          72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV  116 (142)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             EEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence            9999999754  233445567788888888888887765444443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=4.5e-05  Score=57.35  Aligned_cols=80  Identities=20%  Similarity=0.309  Sum_probs=60.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccc---c--CCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~---~--~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      +.++++|+|.|+ |+.|++++..|++.|. ++++..|+++..++...   .  ..........|+.+ .+.+.+.+.. +
T Consensus        15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~   91 (182)
T d1vi2a1          15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-QQAFAEALAS-A   91 (182)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHHT-C
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc-ccchhhhhcc-c
Confidence            456899999997 8999999999999986 78888998765443211   0  11234455778888 7778888888 9


Q ss_pred             cEEEEcCCC
Q 025456          137 EAVVCATGF  145 (252)
Q Consensus       137 d~vi~~ag~  145 (252)
                      |+|||+...
T Consensus        92 diiIN~Tp~  100 (182)
T d1vi2a1          92 DILTNGTKV  100 (182)
T ss_dssp             SEEEECSST
T ss_pred             ceeccccCC
Confidence            999999754

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=2.4e-05  Score=60.97  Aligned_cols=78  Identities=13%  Similarity=0.177  Sum_probs=55.6

Q ss_pred             cCCCcEEEEEcC----------------CChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC-Ch
Q 025456           63 SVKQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-GS  125 (252)
Q Consensus        63 ~~~~~~vlVtGa----------------tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d-~~  125 (252)
                      +++|++||||+|                ||..|.+|++++.++|++|+++.-.....      ....+..+...-.+ ..
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~------~p~~~~~~~~~t~~~m~   76 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP------TPPFVKRVDVMTALEME   76 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC------CCTTEEEEECCSHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC------cccccccceehhhHHHH
Confidence            467899999876                79999999999999999999987654321      22456665543222 12


Q ss_pred             HHHHHHHcCCCcEEEEcCCCCC
Q 025456          126 AKLSEAIGDDSEAVVCATGFQP  147 (252)
Q Consensus       126 ~~~~~~~~~~~d~vi~~ag~~~  147 (252)
                      +.+.+.+.. .|++|++|++..
T Consensus        77 ~~~~~~~~~-~D~~i~aAAvsD   97 (223)
T d1u7za_          77 AAVNASVQQ-QNIFIGCAAVAD   97 (223)
T ss_dssp             HHHHHHGGG-CSEEEECCBCCS
T ss_pred             HHHHhhhcc-ceeEeeeechhh
Confidence            445555566 999999998764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.87  E-value=2.2e-05  Score=56.74  Aligned_cols=105  Identities=13%  Similarity=0.084  Sum_probs=66.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---ccc---CCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSK---DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~---~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      +||.|+|+ |.+|..++-.|+.+|.  ++++++++++..+..   +.+   .........+|        .+.+.+ .|+
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--------~~~~~~-adi   71 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--------YSDVKD-CDV   71 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--------GGGGTT-CSE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc--------HHHhCC-Cce
Confidence            57888897 9999999999998874  899999887654211   111   11223332222        124667 999


Q ss_pred             EEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCE-EEEEc
Q 025456          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNR-FILIS  181 (252)
Q Consensus       139 vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~-~v~~S  181 (252)
                      ||.+||....  .+..+.+..|..-...+.+.+++.+.+- ++.+|
T Consensus        72 vvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          72 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             EEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             EEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence            9999986542  3344556788888889999998876544 44443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.86  E-value=4.9e-05  Score=54.90  Aligned_cols=105  Identities=17%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhhc---ccc---CCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT---LSK---DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~---~~~---~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      .||.|+|+ |.+|.+++..|+.+|.  ++++++++++..+..   +.+   ......+...+  +    . +.+.+ .|+
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~----~-~~~~d-aDv   72 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--D----P-EICRD-ADM   72 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--C----G-GGGTT-CSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--C----H-HHhhC-CcE
Confidence            37888997 9999999999999874  899999887654321   111   11223333322  1    1 23667 999


Q ss_pred             EEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEE
Q 025456          139 VVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (252)
Q Consensus       139 vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~  180 (252)
                      ||.++|...  ..+..+.+..|..-...+.+.+++.+.+-++.+
T Consensus        73 VVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~iv  116 (143)
T d1llda1          73 VVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML  116 (143)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             EEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEE
Confidence            999999754  234446677888888889898888875444443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.83  E-value=3.9e-05  Score=55.83  Aligned_cols=43  Identities=21%  Similarity=0.244  Sum_probs=38.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      +.++++|.|.||.|.+|+.+++.|.++||+|.+.+|+.....+
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~   48 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE   48 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc
Confidence            4468999999999999999999999999999999998765544

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=1.2e-05  Score=60.25  Aligned_cols=77  Identities=21%  Similarity=0.238  Sum_probs=55.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+|+|+||+|++|..+++.+...|.+|+++++++++.+.... .... ++  .|..++  .+.+.+..++ .+|+|+.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~-lGa~-~v--i~~~~~d~~~~v~~~t~g~g~d~v~d  103 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-AGAW-QV--INYREEDLVERLKEITGGKKVRVVYD  103 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTCS-EE--EETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh-cCCe-EE--EECCCCCHHHHHHHHhCCCCeEEEEe
Confidence            37899999999999999999888889999999999887654432 1111 22  365552  2445554444 5899999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      +.|.
T Consensus       104 ~~g~  107 (179)
T d1qora2         104 SVGR  107 (179)
T ss_dssp             CSCG
T ss_pred             CccH
Confidence            8873

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=1.5e-05  Score=51.17  Aligned_cols=40  Identities=28%  Similarity=0.355  Sum_probs=35.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK  104 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~  104 (252)
                      ++.+|+|+||+|++|...++.+...|++|+++.+++++.+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~   70 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE   70 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence            4789999999999999999988889999999999887654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.80  E-value=5.6e-05  Score=54.53  Aligned_cols=106  Identities=18%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhcc---cc----CCCCeEEEE-eeCCCChHHHHHHHcCCCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTL---SK----DNPSLQIVK-ADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~---~~----~~~~~~~i~-~Dl~d~~~~~~~~~~~~~d  137 (252)
                      +||.|+|+ |.+|..++-.|+.++ .++++++.+++......   ..    ......+.. .|..        .+.+ .|
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~--------~~~~-ad   71 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA--------DTAN-SD   71 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG--------GGTT-CS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH--------HhcC-CC
Confidence            68999996 999999999988877 48888888776543211   00    111222222 2222        3456 89


Q ss_pred             EEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       138 ~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      +||.+||...  ..+..+.+..|..-...+++.+.+.+.+-++.+-|
T Consensus        72 vvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          72 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             EEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             EEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence            9999999654  34566777889888899999998876544544433

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.79  E-value=2.1e-05  Score=60.30  Aligned_cols=76  Identities=22%  Similarity=0.269  Sum_probs=50.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC------------ChHHHHHHHcC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE------------GSAKLSEAIGD  134 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d------------~~~~~~~~~~~  134 (252)
                      |+|.|.| .|++|..++..|++.|++|++++.+.+..+.+..+..+   +.+-++.+            ...+..+++..
T Consensus         1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p---~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~   76 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSP---IVEPGLEALLQQGRQTGRLSGTTDFKKAVLD   76 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCS---SCCTTHHHHHHHHHHTTCEEEESCHHHHHHT
T ss_pred             CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCc---ccchhhhhhhhhhhcccccccCCCHHHHHhh
Confidence            5788997 59999999999999999999999988776554321110   00000000            01234556666


Q ss_pred             CCcEEEEcCCCCC
Q 025456          135 DSEAVVCATGFQP  147 (252)
Q Consensus       135 ~~d~vi~~ag~~~  147 (252)
                       .|++|.|.+...
T Consensus        77 -~d~i~i~VpTP~   88 (202)
T d1mv8a2          77 -SDVSFICVGTPS   88 (202)
T ss_dssp             -CSEEEECCCCCB
T ss_pred             -CCEEEEecCccc
Confidence             899999998654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=3.7e-05  Score=56.54  Aligned_cols=37  Identities=27%  Similarity=0.292  Sum_probs=33.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK  104 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~  104 (252)
                      |||+|.|+ |.+|..++..|++.|++|.+++|++....
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~   37 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYC   37 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhh
Confidence            68999998 99999999999999999999999876544

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.77  E-value=0.00018  Score=53.68  Aligned_cols=110  Identities=17%  Similarity=0.124  Sum_probs=69.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC---CC----eEEEeecCchhh--hhc---ccc-CCCCeEEEEeeCCCChHHHHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK---GF----AVKAGVRDLDKA--KTT---LSK-DNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~---G~----~V~~~~r~~~~~--~~~---~~~-~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      ..+|.|+||+|.||++++-.|++.   |.    .+.+++.+....  +..   +.. ......-+..  +   ....+.+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~--~---~~~~~~~   98 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--G---IDPYEVF   98 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--E---SCHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccc--c---ccchhhc
Confidence            468999999999999999999874   32    345455443221  110   111 1122222211  1   2245678


Q ss_pred             cCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhc-CCC-EEEEEc
Q 025456          133 GDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKR-GVN-RFILIS  181 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~-~~~-~~v~~S  181 (252)
                      .+ .|+||..+|...  ..++.+.+..|..-...+.+++.+. ... +++.+|
T Consensus        99 ~~-aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1          99 ED-VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             TT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cC-CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            88 999999998754  3455567788998899999999885 322 454554

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.76  E-value=9.6e-05  Score=53.23  Aligned_cols=106  Identities=17%  Similarity=0.074  Sum_probs=70.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCchhhhhc---cc----cCCCCeEEEEe-eCCCChHHHHHHHcCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTT---LS----KDNPSLQIVKA-DVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~---~~----~~~~~~~~i~~-Dl~d~~~~~~~~~~~~~  136 (252)
                      |||.|.|+ |.+|..++-.|+.+|  .++++++++++..+..   +.    .......+... |.        +.+.+ .
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~--------~~~~~-a   70 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY--------SLLKG-S   70 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG--------GGGTT-C
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH--------HHhcc-c
Confidence            58889996 999999999999887  4799999887664321   10    01122233332 22        24667 9


Q ss_pred             cEEEEcCCCCCC--CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          137 EAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       137 d~vi~~ag~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      |+||..+|....  .+..+.+..|..-...+.+.+++.+.+-++.+-|
T Consensus        71 diVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             cEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            999999986542  3444556778888888888888876544555443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=3.5e-05  Score=57.18  Aligned_cols=77  Identities=14%  Similarity=0.046  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|.|+ |.+|...++.+...|.+|+++++++++.+...+ .... ++  .|-.++.+..++..++ +|.+|.+.+
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~-lGa~-~~--i~~~~~~~~~~~~~~~-~d~vi~~~~  100 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MGAD-HY--IATLEEGDWGEKYFDT-FDLIVVCAS  100 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTCS-EE--EEGGGTSCHHHHSCSC-EEEEEECCS
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhc-cCCc-EE--eeccchHHHHHhhhcc-cceEEEEec
Confidence            4789999997 999999888777789999999998877654322 1112 22  2433313334444455 999999887


Q ss_pred             CCC
Q 025456          145 FQP  147 (252)
Q Consensus       145 ~~~  147 (252)
                      ...
T Consensus       101 ~~~  103 (168)
T d1piwa2         101 SLT  103 (168)
T ss_dssp             CST
T ss_pred             CCc
Confidence            543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.71  E-value=0.00016  Score=52.53  Aligned_cols=107  Identities=16%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhc---ccc----CCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTT---LSK----DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~---~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      ..||.|.|+ |.+|..++..|+.++ .++++++++++..+..   +.+    ......+...+.       .+.+.+ .|
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~-------~~~~~~-ad   73 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT-------YDDLAG-AD   73 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECC-------GGGGTT-CS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccc-------ccccCC-Cc
Confidence            358999996 999999998777776 4788888887654321   110    112333333221       124567 99


Q ss_pred             EEEEcCCCCCC-------CCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          138 AVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~~-------~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      +||.++|....       .+....+..|..-...+.+.+++.+.+-++.+-
T Consensus        74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivv  124 (150)
T d1t2da1          74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV  124 (150)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred             EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            99999986442       124455778888899999999888765555443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=3.5e-05  Score=57.32  Aligned_cols=73  Identities=22%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCC--CCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ..++++|+|.|+ |+.+++++-.|.+.|.+|+++.|+.++.+.+.....  ..+..  .++.+    .  .... +|+||
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~--~~~~~----~--~~~~-~dliI   84 (170)
T d1nyta1          15 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQA--LSMDE----L--EGHE-FDLII   84 (170)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEE--CCSGG----G--TTCC-CSEEE
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccc--ccccc----c--cccc-cceee
Confidence            346899999997 999999999999999999999999887765432211  12222  22222    1  1234 89999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      |+...
T Consensus        85 N~Tp~   89 (170)
T d1nyta1          85 NATSS   89 (170)
T ss_dssp             ECCSC
T ss_pred             ccccc
Confidence            98743

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.70  E-value=4.9e-06  Score=62.04  Aligned_cols=42  Identities=29%  Similarity=0.399  Sum_probs=36.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~  107 (252)
                      +.+|||+||+|++|...++.....|++|+++++++++.+...
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~   65 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK   65 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH
Confidence            568999999999999999887788999999999987765443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=7.4e-05  Score=54.37  Aligned_cols=75  Identities=17%  Similarity=0.173  Sum_probs=57.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-CCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .++|.|. |-+|..+++.|.++|++|+++..+++........ ...++.++.+|.+| ++.++++--++.|+||-+.+
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d-~~~L~~a~i~~a~~vi~~~~   80 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSND-SSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS-HHHHHHHTTTTCSEEEECSS
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcc-hHHHHHhccccCCEEEEccc
Confidence            6889997 8999999999999999999999888654322221 23579999999999 77776653334899987753

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.5e-05  Score=59.96  Aligned_cols=73  Identities=23%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag  144 (252)
                      +.+|+|+||+|++|...++.+...|++|+++++++++.+....   .+.+.+ .|..+ .+. .+.+.. ..|.+|++.|
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~---lGad~v-i~~~~-~~~-~~~l~~~~~~~vvD~Vg  105 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS---LGASRV-LPRDE-FAE-SRPLEKQVWAGAIDTVG  105 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH---HTEEEE-EEGGG-SSS-CCSSCCCCEEEEEESSC
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHh---hccccc-ccccc-HHH-HHHHHhhcCCeeEEEcc
Confidence            4689999999999999999888899999999999887654322   123322 23322 111 122222 3688888775

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.67  E-value=3.8e-05  Score=57.39  Aligned_cols=75  Identities=21%  Similarity=0.251  Sum_probs=51.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccC-----CCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD-----NPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .|++.|.|| |-+|..++..|.++|++|.+.+|+++..+......     ............. ..+..+.+.+ .|+||
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~-aD~ii   77 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL-TSDIGLAVKD-ADVIL   77 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEE-ESCHHHHHTT-CSEEE
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhh-hhhhHhHhcC-CCEEE
Confidence            379999998 99999999999999999999999987665432210     1111111111111 1235677888 99999


Q ss_pred             EcC
Q 025456          141 CAT  143 (252)
Q Consensus       141 ~~a  143 (252)
                      .+.
T Consensus        78 i~v   80 (184)
T d1bg6a2          78 IVV   80 (184)
T ss_dssp             ECS
T ss_pred             EEE
Confidence            875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00021  Score=52.84  Aligned_cols=99  Identities=16%  Similarity=0.187  Sum_probs=60.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHH----cCCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI----GDDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~----~~~~d~v  139 (252)
                      .+.+|+|.|+ |.+|...+..+...|+ +|+++++++++.+...+ .... .++..+-.+ .....+.+    ...+|+|
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~-~Ga~-~~~~~~~~~-~~~~~~~~~~~~g~g~Dvv  101 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-IGAD-LVLQISKES-PQEIARKVEGQLGCKPEVT  101 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-TTCS-EEEECSSCC-HHHHHHHHHHHHTSCCSEE
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH-hCCc-ccccccccc-cccccccccccCCCCceEE
Confidence            3689999987 9999999998888998 79999999887654322 2121 122222222 33333332    2249999


Q ss_pred             EEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       140 i~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      |.++|..             ......++.++..  +++++++-
T Consensus       102 id~~G~~-------------~~~~~a~~~~~~g--G~iv~~G~  129 (171)
T d1pl8a2         102 IECTGAE-------------ASIQAGIYATRSG--GTLVLVGL  129 (171)
T ss_dssp             EECSCCH-------------HHHHHHHHHSCTT--CEEEECSC
T ss_pred             EeccCCc-------------hhHHHHHHHhcCC--CEEEEEec
Confidence            9999832             1123334444433  48888763

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.63  E-value=0.0001  Score=53.20  Aligned_cols=93  Identities=19%  Similarity=0.156  Sum_probs=54.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .++|.|.||||++|+.+++.|.++++   ++..+..+....+.... ...  +...-++.+      ..+.+ +|++|.+
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~-~~~--~~~~~~~~~------~~~~~-~d~vf~a   71 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGF-AES--SLRVGDVDS------FDFSS-VGLAFFA   71 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEE-TTE--EEECEEGGG------CCGGG-CSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceee-ccc--cchhccchh------hhhcc-ceEEEec
Confidence            47899999999999999999976553   66665544332222110 111  111122211      12445 8999988


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      ++.              .....+...+.+.+. ++|-.||.
T Consensus        72 ~p~--------------~~s~~~~~~~~~~g~-~VID~Ss~   97 (144)
T d2hjsa1          72 AAA--------------EVSRAHAERARAAGC-SVIDLSGA   97 (144)
T ss_dssp             SCH--------------HHHHHHHHHHHHTTC-EEEETTCT
T ss_pred             CCc--------------chhhhhccccccCCc-eEEeechh
Confidence            752              124455566666775 67766765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.00015  Score=53.52  Aligned_cols=74  Identities=15%  Similarity=0.129  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      .+.+|+|.|+ |.+|...++.+...|+++++++++.++.+.... .... .  ..|..+ .+......++ +|++|.+.|
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~-lGad-~--~i~~~~-~~~~~~~~~~-~D~vid~~g  102 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LGAD-E--VVNSRN-ADEMAAHLKS-FDFILNTVA  102 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HTCS-E--EEETTC-HHHHHTTTTC-EEEEEECCS
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHHhc-cCCc-E--EEECch-hhHHHHhcCC-Cceeeeeee
Confidence            4789999986 999999998888899999999988776543221 1111 1  246555 5555555566 999999987


Q ss_pred             C
Q 025456          145 F  145 (252)
Q Consensus       145 ~  145 (252)
                      .
T Consensus       103 ~  103 (168)
T d1uufa2         103 A  103 (168)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.51  E-value=0.00067  Score=49.26  Aligned_cols=110  Identities=15%  Similarity=0.070  Sum_probs=68.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-------eEEEeecCchhh--hhc---ccc-CCCCeEEEEeeCCCChHHHHHHH
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDKA--KTT---LSK-DNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~--~~~---~~~-~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      -++|.|+||+|.+|++++-.|+..+.       +++..+.+....  +.+   +.. .......+.  ..+   ...+.+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~---~~~~~~   77 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVI--ATD---KEEIAF   77 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEE--EES---CHHHHT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccc--cCc---cccccc
Confidence            47999999999999999999986542       345444433222  111   110 112222222  222   234677


Q ss_pred             cCCCcEEEEcCCCCC--CCCCCCcceehHHHHHHHHHHHHhc-CCC-EEEEEc
Q 025456          133 GDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKR-GVN-RFILIS  181 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~--~~~~~~~~~~n~~g~~~ll~~~~~~-~~~-~~v~~S  181 (252)
                      .+ .|+||.++|...  ..+..+.++.|..-.+.+.+.+.+. +-. .++.+|
T Consensus        78 ~~-~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs  129 (154)
T d5mdha1          78 KD-LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (154)
T ss_dssp             TT-CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CC-ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence            78 999999999754  3456677889998889999888664 433 344444

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00041  Score=47.55  Aligned_cols=69  Identities=16%  Similarity=0.214  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      ...+|.|.|| |.+|+-++....+.|++|++++.+++......     --+++.+|..| .+.+.+.... .+|+|-
T Consensus        10 ~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~~v-----a~~~i~~~~~d-~~~l~~~~~~~~~DviT   79 (111)
T d1kjqa2          10 AATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAMHV-----AHRSHVINMLD-GDALRRVVELEKPHYIV   79 (111)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGGGG-----SSEEEECCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchhhc-----CCeEEECCCCC-HHHHHHHHHhhCCceEE
Confidence            3679999996 99999999999999999999998876543322     13667899999 7888776642 278884

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.44  E-value=6.1e-05  Score=56.07  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccC--CCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ..++++|+|.|+ |+.+++++..|.+.+.+|+++.|+.++.+.+....  ..++..+..|-.        .+.. +|+||
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~--------~~~~-~diiI   84 (171)
T d1p77a1          15 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSI--------PLQT-YDLVI   84 (171)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC--------CCSC-CSEEE
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccc--------cccc-cceee
Confidence            346899999996 89999999999988889999999988776543221  123333332211        1345 89999


Q ss_pred             EcCCCC
Q 025456          141 CATGFQ  146 (252)
Q Consensus       141 ~~ag~~  146 (252)
                      |+....
T Consensus        85 N~tp~g   90 (171)
T d1p77a1          85 NATSAG   90 (171)
T ss_dssp             ECCCC-
T ss_pred             eccccc
Confidence            997643

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=6.6e-05  Score=56.63  Aligned_cols=102  Identities=16%  Similarity=0.122  Sum_probs=56.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEE-eecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKA-GVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      +.+|+|+||+|++|...++.+...|.++++ +++++++...+.......   ...|..++  .+.+++...+.+|+||.+
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad---~vi~~~~~~~~~~~~~~~~~GvDvv~D~  107 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD---AAVNYKTGNVAEQLREACPGGVDVYFDN  107 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS---EEEETTSSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce---EEeeccchhHHHHHHHHhccCceEEEec
Confidence            479999999999999999988778986554 455554443332212222   22355542  233444333249999999


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceee
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~  186 (252)
                      .|-.              .....++.++..  ++++.+++.+.|
T Consensus       108 vGg~--------------~~~~~~~~l~~~--G~iv~~G~~s~~  135 (187)
T d1vj1a2         108 VGGD--------------ISNTVISQMNEN--SHIILCGQISQY  135 (187)
T ss_dssp             SCHH--------------HHHHHHTTEEEE--EEEEEC------
T ss_pred             CCch--------------hHHHHhhhcccc--ccEEEecccccc
Confidence            8721              012223333322  489888776544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=0.00016  Score=54.06  Aligned_cols=97  Identities=15%  Similarity=0.097  Sum_probs=61.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC-h-H---HHHHHHcC-CCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-S-A---KLSEAIGD-DSE  137 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~-~---~~~~~~~~-~~d  137 (252)
                      .+.+|+|+|+ |.+|...++.+...|+ +|+++++++++.+...+ .... .+  .|..+. . +   .+.+...+ .+|
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~-~v--i~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE-IGAD-LT--LNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH-TTCS-EE--EETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECC-Cccchhheeccccccccccccccccccccccccc-ccce-EE--EeccccchHHHHHHHHHhhCCCCce
Confidence            4789999997 9999999998888997 79999998887654322 2221 12  344441 1 1   23333322 389


Q ss_pred             EEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       138 ~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      +||.++|...             .....++.++..  ++++.++
T Consensus       103 vvid~vG~~~-------------~~~~a~~~l~~~--G~iv~~G  131 (182)
T d1vj0a2         103 FILEATGDSR-------------ALLEGSELLRRG--GFYSVAG  131 (182)
T ss_dssp             EEEECSSCTT-------------HHHHHHHHEEEE--EEEEECC
T ss_pred             EEeecCCchh-------------HHHHHHHHhcCC--CEEEEEe
Confidence            9999987421             123344444443  4788776

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.39  E-value=0.00021  Score=52.72  Aligned_cols=77  Identities=14%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCC--ChHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d--~~~~~~~~~~~-~~d~vi  140 (252)
                      .+.+|+|+|++|.+|...+..+...| .+|+++++++++.+.... .... .+  .|..+  ..+.+.+...+ .+|++|
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~Ga~-~~--i~~~~~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-AGAD-YV--INASMQDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-HTCS-EE--EETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-cCCc-ee--eccCCcCHHHHHHHHhhcccchhhh
Confidence            47899999999999999999888888 488888888776554322 1111 22  24333  12333333333 499999


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      .++|.
T Consensus       103 d~~g~  107 (170)
T d1jvba2         103 DLNNS  107 (170)
T ss_dssp             ESCCC
T ss_pred             ccccc
Confidence            99874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.39  E-value=0.00016  Score=53.16  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=33.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      |+|.|.|. |.+|..+++.|.++|++|++.+|+++..++
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~   38 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEK   38 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHH
Confidence            57889986 999999999999999999999999876654

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.34  E-value=0.00054  Score=49.36  Aligned_cols=94  Identities=15%  Similarity=0.110  Sum_probs=54.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC----CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG----FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      |+|.|.||||++|+.+++.|+++.    .++..+..+....+. .. ...+.. ...+..+ .    +.+.+ +|+||.|
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~-~~-~~~~~~-~~~~~~~-~----~~~~~-~DvvF~a   71 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPA-PN-FGKDAG-MLHDAFD-I----ESLKQ-LDAVITC   71 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBC-CC-SSSCCC-BCEETTC-H----HHHTT-CSEEEEC
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccc-cc-cCCcce-eeecccc-h----hhhcc-ccEEEEe
Confidence            579999999999999999998753    255554433221111 10 111111 1112222 2    33566 9999998


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCC-EEEEEccc
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSI  183 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~v~~SS~  183 (252)
                      .+-              .-++.+...+.+.|.+ .+|=.||.
T Consensus        72 lp~--------------~~s~~~~~~l~~~g~~~~VIDlSsd   99 (147)
T d1mb4a1          72 QGG--------------SYTEKVYPALRQAGWKGYWIDAAST   99 (147)
T ss_dssp             SCH--------------HHHHHHHHHHHHTTCCSEEEESSST
T ss_pred             cCc--------------hHHHHHhHHHHHcCCceEEEeCCcc
Confidence            752              1245666777777864 35555654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.29  E-value=0.00066  Score=50.56  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-CeEEEe
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAG   96 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~   96 (252)
                      |++|.|.||||++|+.+++.|.++. .++..+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l   32 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL   32 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence            6899999999999999999999985 466544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.27  E-value=0.0006  Score=50.45  Aligned_cols=79  Identities=13%  Similarity=0.071  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~  142 (252)
                      .+.+|+|.|+ |++|...+..+...| .+|+++++++++.+...+ ......+...|-.+..+...+...+ .+|++|.+
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~-~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~  105 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-VGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  105 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH-hCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence            4789999999 789999999999987 588888888877654332 2112111111222212233333322 49999999


Q ss_pred             CCC
Q 025456          143 TGF  145 (252)
Q Consensus       143 ag~  145 (252)
                      .|.
T Consensus       106 ~G~  108 (176)
T d2jhfa2         106 IGR  108 (176)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            884

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.24  E-value=0.00021  Score=53.91  Aligned_cols=76  Identities=17%  Similarity=0.171  Sum_probs=51.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcccc-----CCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      +.|++|.|.|| |-.|.+++..|++.|++|++..|+++..+.....     ..+++.+ .-++.- ..++.+++.+ .|+
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l-~~~i~~-t~~l~~a~~~-ad~   80 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQL-ASNITF-TSDVEKAYNG-AEI   80 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBC-CTTEEE-ESCHHHHHTT-CSC
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccc-cccccc-chhhhhccCC-CCE
Confidence            45788999997 9999999999999999999999998766532211     0112211 001110 2336677888 898


Q ss_pred             EEEcC
Q 025456          139 VVCAT  143 (252)
Q Consensus       139 vi~~a  143 (252)
                      ||.+.
T Consensus        81 iiiav   85 (189)
T d1n1ea2          81 ILFVI   85 (189)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            88765

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.21  E-value=0.0002  Score=53.41  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeec
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVR   98 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r   98 (252)
                      |++|.|.||||++|+.+++.|.++. .++..+.-
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s   34 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS   34 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeec
Confidence            5799999999999999999999875 46665543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.19  E-value=0.0032  Score=45.81  Aligned_cols=40  Identities=20%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~  106 (252)
                      |++|.|.| .|-+|+.+++.|+++||+|.+.+|++++.+..
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~   40 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL   40 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhh
Confidence            57899998 59999999999999999999999998776543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.18  E-value=0.00023  Score=52.95  Aligned_cols=98  Identities=12%  Similarity=0.079  Sum_probs=62.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~-~~d~vi  140 (252)
                      .+.+|+|.|+ |++|...++.+...|+ +|+++++++.+.+.... .+.. ++  .|..++  .+.+.+..++ .+|+||
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~-lGa~-~~--i~~~~~~~~~~v~~~t~g~G~D~vi  101 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF-YGAT-DI--LNYKNGHIEDQVMKLTNGKGVDRVI  101 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH-HTCS-EE--ECGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHh-hCcc-cc--ccccchhHHHHHHHHhhccCcceEE
Confidence            4789999986 9999999888888896 69988988776553322 1111 22  243331  3445555543 399999


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      .++|...             .....++.++..  ++++.++-
T Consensus       102 d~~g~~~-------------~~~~a~~~~~~~--G~iv~~G~  128 (174)
T d1jqba2         102 MAGGGSE-------------TLSQAVKMVKPG--GIISNINY  128 (174)
T ss_dssp             ECSSCTT-------------HHHHHHHHEEEE--EEEEECCC
T ss_pred             EccCCHH-------------HHHHHHHHHhcC--CEEEEEee
Confidence            9998431             123344555543  47888763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.15  E-value=0.00031  Score=51.83  Aligned_cols=41  Identities=27%  Similarity=0.468  Sum_probs=35.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT  106 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~  106 (252)
                      ++++|+|.|+ |+.|++++..|.+.|. +|.++.|+.++.+.+
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L   57 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL   57 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence            4789999997 9999999999999996 799999998876654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.13  E-value=0.00037  Score=51.67  Aligned_cols=76  Identities=13%  Similarity=0.061  Sum_probs=48.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeE-EEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAV-KAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V-~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~  141 (252)
                      .+.+|+|.|+ |.+|...+..+...|+++ ++.++++.+.+...+ ... .++  .|..++  .+.+++..++.+|+||.
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~-~Ga-~~~--i~~~~~~~~~~i~~~t~gg~D~vid  102 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ-LGA-THV--INSKTQDPVAAIKEITDGGVNFALE  102 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH-HTC-SEE--EETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHH-cCC-eEE--EeCCCcCHHHHHHHHcCCCCcEEEE
Confidence            4789999997 999999998888888765 455666665543221 111 133  344441  23444444435999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      |.|.
T Consensus       103 ~~G~  106 (174)
T d1f8fa2         103 STGS  106 (174)
T ss_dssp             CSCC
T ss_pred             cCCc
Confidence            9883

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.13  E-value=0.00042  Score=48.69  Aligned_cols=70  Identities=21%  Similarity=0.236  Sum_probs=52.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      |.++|.|. |-+|+.+++.|.  |++|.++..+++..+....   .++.++.+|.++ ++.++++--++.+.+|-+.
T Consensus         1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~---~~~~~i~Gd~~~-~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKVLR---SGANFVHGDPTR-VSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHHHH---TTCEEEESCTTS-HHHHHHTTCTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHHHh---cCccccccccCC-HHHHHHhhhhcCcEEEEec
Confidence            46888986 899999999984  5678888888776654432   578999999999 7777765322488888654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.12  E-value=0.0007  Score=49.54  Aligned_cols=74  Identities=19%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+|+|.|+ |.+|...++.+...|++|+++++++++.+...+ .... ++  .|..+.  .+.+.+...+ .+.+|.+
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~-~Ga~-~~--i~~~~~~~~~~~~~~~~g-~~~~i~~  100 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELARK-LGAS-LT--VNARQEDPVEAIQRDIGG-AHGVLVT  100 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCS-EE--EETTTSCHHHHHHHHHSS-EEEEEEC
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhhc-cCcc-cc--ccccchhHHHHHHHhhcC-Ccccccc
Confidence            4789999986 999999998888889999999999877654332 2221 22  344441  2344444555 6666666


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      ++
T Consensus       101 ~~  102 (166)
T d1llua2         101 AV  102 (166)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.0014  Score=51.13  Aligned_cols=105  Identities=19%  Similarity=0.257  Sum_probs=65.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCCCeEEEEe
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNPSLQIVKA  119 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~~~~~i~~  119 (252)
                      .+++.+|+|.|+ |++|.+++..|++.|. ++++++.+.=....                      .+....+.+.+...
T Consensus        27 kL~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~  105 (247)
T d1jw9b_          27 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  105 (247)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhh
Confidence            356789999996 9999999999999996 67777654211110                      01112244555554


Q ss_pred             eCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       120 Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      +...........+.. .|++|.+..             |...-..+-+.|.+.++ .+|+.+..
T Consensus       106 ~~~~~~~~~~~~~~~-~divid~~d-------------~~~~~~~in~~~~~~~i-p~i~g~~~  154 (247)
T d1jw9b_         106 NALLDDAELAALIAE-HDLVLDCTD-------------NVAVRNQLNAGCFAAKV-PLVSGAAI  154 (247)
T ss_dssp             CSCCCHHHHHHHHHT-SSEEEECCS-------------SHHHHHHHHHHHHHHTC-CEEEEEEE
T ss_pred             hhhhhhccccccccc-cceeeeccc-------------hhhhhhhHHHHHHHhCC-Cccccccc
Confidence            433223455566666 888887642             33345566777888887 46665443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=0.0021  Score=42.61  Aligned_cols=71  Identities=20%  Similarity=0.339  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCChHH-HHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           65 KQKKIFVAGATGSSG-KRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        65 ~~~~vlVtGatG~iG-~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      +.+++.+.|- |++| ++||+.|+++|++|.+-++......+.+..  .++.+..++-   .+    .+.+ .|.||...
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~--~Gi~v~~g~~---~~----~i~~-~d~vV~S~   75 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ--AGAKIYIGHA---EE----HIEG-ASVVVVSS   75 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH--TTCEEEESCC---GG----GGTT-CSEEEECT
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH--CCCeEEECCc---cc----cCCC-CCEEEECC
Confidence            4688988886 5555 778999999999999999875544333321  3566555432   22    2356 89998887


Q ss_pred             CCC
Q 025456          144 GFQ  146 (252)
Q Consensus       144 g~~  146 (252)
                      ++.
T Consensus        76 AI~   78 (96)
T d1p3da1          76 AIK   78 (96)
T ss_dssp             TSC
T ss_pred             CcC
Confidence            764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.05  E-value=0.00094  Score=49.53  Aligned_cols=76  Identities=11%  Similarity=0.105  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCC---ChHHHHHHHcC-CCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE---GSAKLSEAIGD-DSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d---~~~~~~~~~~~-~~d~v  139 (252)
                      .+.+|+|+|+ |++|...+..+...|. +|+++++++++.+...+ ..... ++  |..+   ..+.+.+...+ .+|++
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~-~GA~~-~i--n~~~~~~~~~~~~~~~~g~G~d~v  103 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA-VGATE-CI--SPKDSTKPISEVLSEMTGNNVGYT  103 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-HTCSE-EE--CGGGCSSCHHHHHHHHHTSCCCEE
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh-cCCcE-EE--CccccchHHHHHHHHhccccceEE
Confidence            4789999986 9999999999999984 79999999887764322 11221 21  2222   12334443332 49999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |.+.|.
T Consensus       104 i~~~g~  109 (176)
T d1d1ta2         104 FEVIGH  109 (176)
T ss_dssp             EECSCC
T ss_pred             EEeCCc
Confidence            999874

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.00  E-value=0.00061  Score=49.77  Aligned_cols=40  Identities=23%  Similarity=0.387  Sum_probs=35.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~  107 (252)
                      |+|.|.|- |-+|+.+++.|+++|++|++.+|++++.++..
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~   40 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI   40 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH
Confidence            57889985 99999999999999999999999988776543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.94  E-value=3.9e-05  Score=57.43  Aligned_cols=42  Identities=26%  Similarity=0.428  Sum_probs=35.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~  106 (252)
                      +.++|+|+|.|+ |+.+++++..|.+.| +|.++.|+.++.+++
T Consensus        15 ~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l   56 (177)
T d1nvta1          15 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEAL   56 (177)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHH
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHH
Confidence            357899999996 899999999998777 899999998876653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.93  E-value=0.0008  Score=50.11  Aligned_cols=75  Identities=16%  Similarity=0.279  Sum_probs=49.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh--hhhcccc-C--CCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTTLSK-D--NPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--~~~~~~~-~--~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      |+|.|.|+ |-.|.+++..|++.|++|.+..|..+.  .+..... .  .-....-..++.- .+++.+++.+ .|+||.
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~-ad~Ii~   77 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFW-PEQLEKCLEN-AEVVLL   77 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEEC-GGGHHHHHTT-CSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccc-cccHHHHHhc-cchhhc
Confidence            68999997 999999999999999999999886443  2221111 0  0111111112222 4567888888 999998


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      +..
T Consensus        78 avp   80 (180)
T d1txga2          78 GVS   80 (180)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.90  E-value=0.0013  Score=48.13  Aligned_cols=76  Identities=13%  Similarity=0.214  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      .-+|+|.|| |-.|..-++.+.+.|.+|.+++.+.++.+++.......++..   ..+ .+.+.+.+.+ .|+||.++-+
T Consensus        32 pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~---~~~-~~~l~~~~~~-aDivI~aali  105 (168)
T d1pjca1          32 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELL---YSN-SAEIETAVAE-ADLLIGAVLV  105 (168)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEE---ECC-HHHHHHHHHT-CSEEEECCCC
T ss_pred             CcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceee---hhh-hhhHHHhhcc-CcEEEEeeec
Confidence            479999997 999999999999999999999999887765332122334443   234 6778888988 9999998865


Q ss_pred             CC
Q 025456          146 QP  147 (252)
Q Consensus       146 ~~  147 (252)
                      ..
T Consensus       106 pG  107 (168)
T d1pjca1         106 PG  107 (168)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.86  E-value=0.0013  Score=48.45  Aligned_cols=76  Identities=11%  Similarity=0.010  Sum_probs=46.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC---hHHHHHHHc-CCCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG---SAKLSEAIG-DDSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~---~~~~~~~~~-~~~d~v  139 (252)
                      .+.+|+|.|+ |++|...++.+...|. .|+++++++++.+...+ .... ++  .|..+.   .....+... +.+|+|
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~-lGa~-~~--i~~~~~~~~~~~~~~~~~~~g~D~v  102 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE-FGAT-EC--INPQDFSKPIQEVLIEMTDGGVDYS  102 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-HTCS-EE--ECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH-hCCc-EE--EeCCchhhHHHHHHHHHcCCCCcEe
Confidence            4789999998 6899999988888886 56666676665543221 1111 12  222221   222222222 249999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |.+.|.
T Consensus       103 id~~G~  108 (176)
T d2fzwa2         103 FECIGN  108 (176)
T ss_dssp             EECSCC
T ss_pred             eecCCC
Confidence            999873

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.84  E-value=0.0021  Score=47.40  Aligned_cols=76  Identities=13%  Similarity=0.040  Sum_probs=49.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC---hHHHHHHHcC-CCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG---SAKLSEAIGD-DSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~---~~~~~~~~~~-~~d~v  139 (252)
                      .+.+|+|.|+ |++|...++.+...|. +|+++++++++.+.... .... .+  .|..+.   .+.+.+...+ .+|++
T Consensus        27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-lGa~-~~--i~~~~~d~~~~~~~~~~~~~G~d~v  101 (174)
T d1p0fa2          27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-LGAT-EC--LNPKDYDKPIYEVICEKTNGGVDYA  101 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-TTCS-EE--ECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-cCCc-EE--EcCCCchhHHHHHHHHhcCCCCcEE
Confidence            4789999996 9999999999988886 68888888877654322 1111 12  233221   1233333332 49999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |.++|.
T Consensus       102 id~~g~  107 (174)
T d1p0fa2         102 VECAGR  107 (174)
T ss_dssp             EECSCC
T ss_pred             EEcCCC
Confidence            999874

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.82  E-value=0.0082  Score=43.20  Aligned_cols=25  Identities=28%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF   91 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~   91 (252)
                      -+|.|.||||++|.++++.|.++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~f   26 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTL   26 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCC
Confidence            4799999999999999999988864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00097  Score=50.23  Aligned_cols=39  Identities=26%  Similarity=0.212  Sum_probs=35.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK  104 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~  104 (252)
                      .-++|.|.|| |.+|+.++..++..|++|++.+++++..+
T Consensus         3 ~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           3 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            4589999998 99999999999999999999999987543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.75  E-value=0.0011  Score=47.93  Aligned_cols=65  Identities=17%  Similarity=0.211  Sum_probs=46.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      |++.+.|+ |-+|+++++.|++.|++|++..|+.++.+++.....  +.     ..   .+..++++. .|+||-+.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g--~~-----~~---~~~~~~~~~-~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLA--LP-----YA---MSHQDLIDQ-VDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHT--CC-----BC---SSHHHHHHT-CSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccc--ee-----ee---chhhhhhhc-cceeeeec
Confidence            57888885 999999999999999999999999877665432111  11     11   123445566 89888775

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.74  E-value=0.0018  Score=47.91  Aligned_cols=73  Identities=15%  Similarity=0.266  Sum_probs=48.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ..+|.|.|- |-+|..+++.|++.|++|++.+|++++.+++............  ... .+.+.+.+.. .|.+|.+.
T Consensus         2 ~~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~--a~~-~~~~~~~~~~-~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLG--AHS-LEEMVSKLKK-PRRIILLV   74 (176)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEE--CSS-HHHHHHHBCS-SCEEEECS
T ss_pred             CCcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccc--hhh-hhhhhhhhcc-cceEEEec
Confidence            367899996 9999999999999999999999999887765432111110001  112 3445555555 66666554

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0021  Score=46.86  Aligned_cols=70  Identities=24%  Similarity=0.232  Sum_probs=51.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+|+++|.| .|.||+.+++.|...|.+|++...+|.+.-+..-   .+..+         ..+++++.. .|+||-+
T Consensus        21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~---dG~~v---------~~~~~a~~~-adivvta   86 (163)
T d1li4a1          21 MIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQAAM---EGYEV---------TTMDEACQE-GNIFVTT   86 (163)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---TTCEE---------CCHHHHTTT-CSEEEEC
T ss_pred             eecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHhhc---CceEe---------eehhhhhhh-ccEEEec
Confidence            45799999999 6999999999999999999999998855432111   22222         124456666 8999988


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      .|..
T Consensus        87 TGn~   90 (163)
T d1li4a1          87 TGCI   90 (163)
T ss_dssp             SSCS
T ss_pred             CCCc
Confidence            8753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.64  E-value=0.005  Score=46.22  Aligned_cols=77  Identities=19%  Similarity=0.309  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCC--ChHHHHHHHcC-CCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d--~~~~~~~~~~~-~~d~vi  140 (252)
                      .+.+|+|.|+ |.+|...+..+...|. +|+++++++++++....   -+.+.+. |-.+  ..+.+.+...+ .+|++|
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~---~Ga~~~~-~~~~~~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA---QGFEIAD-LSLDTPLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---TTCEEEE-TTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhh---ccccEEE-eCCCcCHHHHHHHHhCCCCcEEEE
Confidence            4789999986 9999888887777776 78888888776654322   1233322 2222  12445555544 499999


Q ss_pred             EcCCCC
Q 025456          141 CATGFQ  146 (252)
Q Consensus       141 ~~ag~~  146 (252)
                      .+.|..
T Consensus       100 d~vG~~  105 (195)
T d1kola2         100 DAVGFE  105 (195)
T ss_dssp             ECCCTT
T ss_pred             ECcccc
Confidence            999853

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.59  E-value=0.0019  Score=44.77  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      .++++|.|| |++|-+++..|.++|.+|+++.+.+.
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence            689999997 99999999999999999999988754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.58  E-value=0.0041  Score=45.81  Aligned_cols=78  Identities=10%  Similarity=0.026  Sum_probs=48.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCC-ChHHHHHHHc-CCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-GSAKLSEAIG-DDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d-~~~~~~~~~~-~~~d~vi~  141 (252)
                      .+.+|+|+|+ |+||...+..+...|. .|++.++++.+.+...+ .... +++...-.| ....+.+... +.+|++|.
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~-~Ga~-~~i~~~~~~~~~~~~~~~~~~~G~d~vie  104 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-LGAT-DCLNPRELDKPVQDVITELTAGGVDYSLD  104 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCS-EEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH-hCCC-cccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence            4789999985 9999999999999997 57777877766543221 1111 222211111 1222333332 24999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      |+|.
T Consensus       105 ~~G~  108 (174)
T d1e3ia2         105 CAGT  108 (174)
T ss_dssp             SSCC
T ss_pred             eccc
Confidence            9984

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.57  E-value=0.0021  Score=44.57  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      +.++++|.|| |++|..++..|.+.|.+|+++.+.+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence            4689999997 9999999999999999999998865

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.54  E-value=0.0026  Score=46.50  Aligned_cols=39  Identities=15%  Similarity=0.303  Sum_probs=33.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCchhhhh
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKT  105 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~  105 (252)
                      |++|+|.|. |.+|..+++.|.+.|+  +|++.+++++..+.
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~   41 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISK   41 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHH
Confidence            568999985 9999999999999986  78888998876654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.54  E-value=0.0024  Score=46.47  Aligned_cols=74  Identities=19%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEEEEc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+|+|.|+ |.+|...++.+...|++|+++++++++.+.... .  +++.+ .|-.+.  .+.+.+...+ .+.+|.+
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~-~--Ga~~~-~~~~~~~~~~~~~~~~~~-~~~~v~~  100 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-L--GADLV-VNPLKEDAAKFMKEKVGG-VHAAVVT  100 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-T--TCSEE-ECTTTSCHHHHHHHHHSS-EEEEEES
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh-c--Cccee-cccccchhhhhcccccCC-CceEEee
Confidence            3789999975 999999988888899999999998877654322 2  22222 233321  2445555566 6667766


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      ++
T Consensus       101 ~~  102 (168)
T d1rjwa2         101 AV  102 (168)
T ss_dssp             SC
T ss_pred             cC
Confidence            65

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.42  E-value=0.0025  Score=43.66  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      .++++|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            479999997 99999999999999999999988653

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0094  Score=43.65  Aligned_cols=83  Identities=17%  Similarity=0.060  Sum_probs=53.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCC-hHHHHHHHcCCCcEEEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~~~~~~~~~~~~d~vi~  141 (252)
                      +++||+++|.|-|.-+|+-++..|+++|..|+....+...... ....-.-......|+... .+.+++.... .|+||.
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~-aDIvIs  103 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-RGESLKLNKHHVEDLGEYSEDLLKKCSLD-SDVVIT  103 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-SCCCSSCCCCEEEEEEECCHHHHHHHHHH-CSEEEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-cccceeeeeeccccccccchhHHhhcccc-CCEEEE
Confidence            5679999999999999999999999999999876544211100 000000011112232211 4667777777 999999


Q ss_pred             cCCCCC
Q 025456          142 ATGFQP  147 (252)
Q Consensus       142 ~ag~~~  147 (252)
                      ++|...
T Consensus       104 avG~p~  109 (171)
T d1edza1         104 GVPSEN  109 (171)
T ss_dssp             CCCCTT
T ss_pred             ccCCCc
Confidence            988644

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.37  E-value=0.0008  Score=50.44  Aligned_cols=39  Identities=23%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             CcEEEE-EcCCChHHHHHHHHHHHCCCeEEEeecCchhhh
Q 025456           66 QKKIFV-AGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK  104 (252)
Q Consensus        66 ~~~vlV-tGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~  104 (252)
                      +.+++| +||+|++|...++.....|.+|++++|+.+..+
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~   68 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD   68 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHH
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccc
Confidence            556666 699999999999888888999999998876543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.0019  Score=46.42  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=33.0

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      .++++|+++|+|| |.+|..-++.|++.|.+|++++..
T Consensus         9 ~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             ECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3567999999998 899999999999999999998654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.34  E-value=0.002  Score=46.33  Aligned_cols=65  Identities=12%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      |+|.|.|. |-+|+.+++.|+++|++|++.+++.+........   ++.+  .      +...+++.. .|+||.+..
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~---~~~~--~------~~~~e~~~~-~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR---TVGV--T------ETSEEDVYS-CPVVISAVT   65 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH---HHTC--E------ECCHHHHHT-SSEEEECSC
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh---cccc--c------ccHHHHHhh-cCeEEEEec
Confidence            57888875 9999999999999999999988876655433221   1111  1      112345666 899988764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.33  E-value=0.0041  Score=45.57  Aligned_cols=76  Identities=16%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC-hHHHHHHHcC-CCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~-~~~~~~~~~~-~~d~vi~  141 (252)
                      .+.+|+|.|+ |.+|...++.+...|. .|+++++++++.+.... ... .++  .|..++ .+.+.+...+ .+|+||.
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-~ga-~~~--i~~~~~~~~~~~~~~~~~g~d~vid  106 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-LGA-DHV--VDARRDPVKQVMELTRGRGVNVAMD  106 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-TTC-SEE--EETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-ccc-cee--ecCcccHHHHHHHhhCCCCceEEEE
Confidence            3789999986 9999999988877775 66777777766554322 211 123  343331 2333333333 4999999


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      ++|.
T Consensus       107 ~~g~  110 (172)
T d1h2ba2         107 FVGS  110 (172)
T ss_dssp             SSCC
T ss_pred             ecCc
Confidence            9984

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.25  E-value=0.0029  Score=43.72  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++++|.|| |++|-.++..|.+.|.+|+++.|.+
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence            478999997 9999999999999999999998864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.24  E-value=0.0062  Score=45.15  Aligned_cols=63  Identities=29%  Similarity=0.389  Sum_probs=47.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      +.++++.|.|. |.||+.+++.|..-|.+|++.+|.+....                ..- .+++++.+.. .|+|+.+.
T Consensus        40 l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~~~----------------~~~-~~~l~ell~~-sDiv~~~~  100 (181)
T d1qp8a1          40 IQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKEGP----------------WRF-TNSLEEALRE-ARAAVCAL  100 (181)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCCSS----------------SCC-BSCSHHHHTT-CSEEEECC
T ss_pred             ccCceEEEecc-ccccccceeeeeccccccccccccccccc----------------eee-eechhhhhhc-cchhhccc
Confidence            57899999996 89999999999999999999988653211                001 2236678888 99888776


Q ss_pred             CC
Q 025456          144 GF  145 (252)
Q Consensus       144 g~  145 (252)
                      ..
T Consensus       101 pl  102 (181)
T d1qp8a1         101 PL  102 (181)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0022  Score=46.86  Aligned_cols=91  Identities=22%  Similarity=0.398  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEee-cCchhh-hhcc----ccCCCCeEEEEeeCCCChHHHHHHHcCCCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGV-RDLDKA-KTTL----SKDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~-r~~~~~-~~~~----~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d  137 (252)
                      +..+|.|.|++|.+|+.|++.+.+. +.++++.. |..... ....    .....++. +..|       +...+.. +|
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~-~~~~-------~~~~~~~-~D   73 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVT-VQSS-------LDAVKDD-FD   73 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCC-EESC-------STTTTTS-CS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCce-eecc-------HHHHhcc-cc
Confidence            3589999999999999999999886 66765543 322111 0000    00011111 1112       2234455 89


Q ss_pred             EEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEE
Q 025456          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (252)
Q Consensus       138 ~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~  179 (252)
                      +||...-              -.++...++.|.+.++ .+|.
T Consensus        74 ViIDFs~--------------p~~~~~~~~~a~~~~~-~~Vi  100 (162)
T d1diha1          74 VFIDFTR--------------PEGTLNHLAFCRQHGK-GMVI  100 (162)
T ss_dssp             EEEECSC--------------HHHHHHHHHHHHHTTC-EEEE
T ss_pred             eEEEecc--------------HHHHHHHHHHHHhccc-eeEE
Confidence            9986642              2356778888888886 4443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.22  E-value=0.0032  Score=43.27  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++++|.|| |++|-+++..|.+.|.+|+++.|..
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            479999997 9999999999999999999999864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0036  Score=43.27  Aligned_cols=35  Identities=17%  Similarity=0.143  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      .++++|.|| |+||..++..|.+.|.+|+++.|.+.
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccc
Confidence            479999997 99999999999999999999988653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.19  E-value=0.0069  Score=45.70  Aligned_cols=42  Identities=17%  Similarity=0.282  Sum_probs=36.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      ++++++|+|-| -|-+|+++++.|.+.|.+|++.+.+......
T Consensus        24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~   65 (201)
T d1c1da1          24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAH   65 (201)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHH
Confidence            46799999999 5999999999999999999988887766544

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.19  E-value=0.002  Score=48.18  Aligned_cols=38  Identities=26%  Similarity=0.195  Sum_probs=34.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK  104 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~  104 (252)
                      -++|.|.|| |.+|+.++..++..|++|++.+++++..+
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIE   41 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHh
Confidence            478999998 99999999999999999999999987644

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.005  Score=38.95  Aligned_cols=52  Identities=21%  Similarity=0.289  Sum_probs=39.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE  123 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d  123 (252)
                      +|+|.|.|| |.+|+-++....+-|++|++++-+++......     ..+++..+..+
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~~~-----a~dvIT~e~E~   52 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPF-----QQSVITAEIER   52 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSCGGGSCG-----GGSEEEESSSC
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCCCccccc-----ccceEEEeecc
Confidence            489999997 99999999999999999999887665433221     23556666654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0038  Score=42.69  Aligned_cols=34  Identities=18%  Similarity=0.067  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++++|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence            478999997 9999999999999999999998875

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.16  E-value=0.0035  Score=46.67  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=27.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEee
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGV   97 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~   97 (252)
                      +..+|.|.||||++|+.+++.|.++.+ ++..+.
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            468999999999999999999999864 665554

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.15  E-value=0.0042  Score=43.61  Aligned_cols=36  Identities=14%  Similarity=0.211  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      ..++++|.|| |++|.+++..|.+.|.+|+++.+.+.
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence            3689999997 99999999999999999999988653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0039  Score=43.23  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++++|.|| |++|..++..|.+.|.+|+++.|..
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence            379999997 9999999999999999999999874

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.09  E-value=0.0034  Score=42.82  Aligned_cols=34  Identities=18%  Similarity=0.138  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++++|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence            478999997 9999999999999999999998864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.06  E-value=0.0027  Score=46.83  Aligned_cols=40  Identities=25%  Similarity=0.353  Sum_probs=35.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~  107 (252)
                      |+|.|.| .|-+|..+++.|++.|++|++.+|++++.+.+.
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~   41 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSKSEEFM   41 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred             CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence            5688888 599999999999999999999999988876543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.05  E-value=0.043  Score=37.23  Aligned_cols=82  Identities=23%  Similarity=0.344  Sum_probs=52.9

Q ss_pred             cEEEEEcCC---ChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           67 KKIFVAGAT---GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGat---G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      |+|.|.|+|   +-.|..+.+.|++.|++|+.+..+.+.   .     .++..+ -++.|       .-.. +|.++-+.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~---i-----~G~~~y-~sl~~-------lp~~-~D~vvi~v   64 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE---I-----EGLKCY-RSVRE-------LPKD-VDVIVFVV   64 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE---E-----TTEECB-SSGGG-------SCTT-CCEEEECS
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc---c-----cCcccc-ccchh-------cccc-ceEEEEEe
Confidence            689999998   679999999999999998876432211   1     122221 12222       2223 89887664


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEE
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~  179 (252)
                      .              -..+..+++.|.+.|++.+++
T Consensus        65 p--------------~~~~~~~l~~~~~~g~k~v~~   86 (116)
T d1y81a1          65 P--------------PKVGLQVAKEAVEAGFKKLWF   86 (116)
T ss_dssp             C--------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred             C--------------HHHHHHHHHHHHhcCCceEEe
Confidence            3              234567788888889876544

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.04  E-value=0.0052  Score=42.22  Aligned_cols=34  Identities=24%  Similarity=0.075  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++++|.|| |+||-.++..|.+.|.+|+++.|..
T Consensus        22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence            488999997 9999999999999999999998864

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.012  Score=43.04  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=33.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      +++||+|+|.|-+.-+|+.++..|+++|+.|......
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~   72 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK   72 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence            4579999999999999999999999999999986654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.03  E-value=0.005  Score=47.30  Aligned_cols=34  Identities=38%  Similarity=0.529  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++|+|.|| |..|...+..|.++|++|.++.|+.
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            578999997 9999999999999999999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.99  E-value=0.013  Score=42.74  Aligned_cols=76  Identities=14%  Similarity=0.101  Sum_probs=48.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCC---hHHHHHHHcC-CCcEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG---SAKLSEAIGD-DSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~---~~~~~~~~~~-~~d~v  139 (252)
                      .+.+|+|+|+ |++|...+..+...|. +|+++++++++.+...+ .... +++  |..++   .+.+.+...+ .+|++
T Consensus        28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~GAd-~~i--n~~~~~~~~~~~~~~~~~~G~d~v  102 (175)
T d1cdoa2          28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-FGAT-DFV--NPNDHSEPISQVLSKMTNGGVDFS  102 (175)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCC-EEE--CGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHH-cCCc-EEE--cCCCcchhHHHHHHhhccCCccee
Confidence            4789999996 7788888888877765 78888888877654332 2211 222  33221   2333443322 49999


Q ss_pred             EEcCCC
Q 025456          140 VCATGF  145 (252)
Q Consensus       140 i~~ag~  145 (252)
                      |.+.|.
T Consensus       103 id~~G~  108 (175)
T d1cdoa2         103 LECVGN  108 (175)
T ss_dssp             EECSCC
T ss_pred             eeecCC
Confidence            999984

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0065  Score=51.27  Aligned_cols=35  Identities=29%  Similarity=0.472  Sum_probs=30.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecC
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRD   99 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   99 (252)
                      +++.+|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus        35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence            34689999998 8899999999999997 68887765

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0087  Score=43.54  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR   98 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r   98 (252)
                      ++.+|+++|.|-+.-+|+.++..|.++|+.|++...
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~   69 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR   69 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence            457999999999999999999999999999987643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.93  E-value=0.0043  Score=42.88  Aligned_cols=33  Identities=27%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      .++++|.|| |+||.+++..|.+.|.+|+++.|+
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            368999997 999999999999999999999875

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.87  E-value=0.0065  Score=45.70  Aligned_cols=66  Identities=12%  Similarity=0.095  Sum_probs=46.4

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.+++|.|.|- |.||+.+++.|..-|.+|++.++........     ..+        . .+++.+.+.. .|+|+.+
T Consensus        40 el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~-----~~~--------~-~~~l~~~l~~-sDii~~~  103 (197)
T d1j4aa1          40 EVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPELEK-----KGY--------Y-VDSLDDLYKQ-ADVISLH  103 (197)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHHH-----TTC--------B-CSCHHHHHHH-CSEEEEC
T ss_pred             cccCCeEEEecc-cccchhHHHhHhhhcccccccCccccccccc-----cee--------e-eccccccccc-ccccccc
Confidence            456899999995 9999999999999999999887654332111     010        1 2335666766 7877766


Q ss_pred             CC
Q 025456          143 TG  144 (252)
Q Consensus       143 ag  144 (252)
                      ..
T Consensus       104 ~p  105 (197)
T d1j4aa1         104 VP  105 (197)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.78  E-value=0.0056  Score=45.75  Aligned_cols=38  Identities=26%  Similarity=0.107  Sum_probs=31.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~  106 (252)
                      |+|.|.| .|++|..++..| ++|++|++.+-++...+.+
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l   38 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSKVDKI   38 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHHHHHH
T ss_pred             CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHHHHHH
Confidence            5788997 699999998755 5799999999988776543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.78  E-value=0.052  Score=37.36  Aligned_cols=94  Identities=10%  Similarity=0.103  Sum_probs=60.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHH-CCCeEEEeecCch-hhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLD-KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~-~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      ..+|+|.|| |.+|+++++.+.. .|++++++..+.. ..-...    .++.++.      .+.+.+.....+++.+.+.
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I----~Gi~V~~------~~~l~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPV----RGGVIEH------VDLLPQRVPGRIEIALLTV   71 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE----TTEEEEE------GGGHHHHSTTTCCEEEECS
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE----CCEEEec------HHHHHHHHhhcccEEEEeC
Confidence            458999997 9999999997754 4788887765433 222211    3555542      3335555544466666554


Q ss_pred             CCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccce
Q 025456          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (252)
Q Consensus       144 g~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~  184 (252)
                      .              -...+.+++.|.+.|++.+..++...
T Consensus        72 ~--------------~~~~~~I~d~l~~~gIk~I~~f~~~~   98 (126)
T d2dt5a2          72 P--------------REAAQKAADLLVAAGIKGILNFAPVV   98 (126)
T ss_dssp             C--------------HHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred             C--------------HHHHHHHHHHHHHcCCCEEeecCcee
Confidence            2              12356788888889998888776543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.71  E-value=0.009  Score=40.84  Aligned_cols=36  Identities=17%  Similarity=0.059  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      .+++++|.|| |++|..++..|.+.|.+|.++.|.+.
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            3689999997 99999999999999999999988753

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.68  E-value=0.0062  Score=43.63  Aligned_cols=40  Identities=15%  Similarity=0.359  Sum_probs=34.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecCchhhhhcc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~  107 (252)
                      |+|.+.|+ |-+|.++++.|++.| ++|.+.+|++++.+.+.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~   41 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLE   41 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHH
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhh
Confidence            57889986 999999999999887 89999999988776543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.66  E-value=0.022  Score=42.00  Aligned_cols=77  Identities=10%  Similarity=0.138  Sum_probs=53.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEe--------------------eCCCC-
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA--------------------DVTEG-  124 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~--------------------Dl~d~-  124 (252)
                      .-+|+|.|| |-.|.+-++.....|.+|.+++.+++..++....   .-.++..                    +.... 
T Consensus        29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l---~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVESL---GGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT---TCEECCC-----------------------CCH
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh---hcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            369999997 9999999999999999999999998776543321   1111111                    11110 


Q ss_pred             hHHHHHHHcCCCcEEEEcCCCCC
Q 025456          125 SAKLSEAIGDDSEAVVCATGFQP  147 (252)
Q Consensus       125 ~~~~~~~~~~~~d~vi~~ag~~~  147 (252)
                      .+.+.+.+.+ .|+||-.+-+..
T Consensus       105 ~~~l~~~l~~-aDlVI~talipG  126 (183)
T d1l7da1         105 AEAVLKELVK-TDIAITTALIPG  126 (183)
T ss_dssp             HHHHHHHHTT-CSEEEECCCCTT
T ss_pred             HHHHHHHHHh-hhhheeeeecCC
Confidence            3456677777 999998875543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.66  E-value=0.0077  Score=46.49  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      .++|+|.|| |..|..++..|+++|++|+++.|++.
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            589999997 99999999999999999999988653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.64  E-value=0.041  Score=35.51  Aligned_cols=84  Identities=17%  Similarity=0.196  Sum_probs=53.6

Q ss_pred             cEEEEEcCCChHH-HHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCCC
Q 025456           67 KKIFVAGATGSSG-KRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus        67 ~~vlVtGatG~iG-~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                      ++|-+.|- |++| +.||+.|+++|++|.+-++......+.+..  .++.+..+.  + .+    .+.+ .|.||...++
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~--~Gi~i~~gh--~-~~----~i~~-~d~vV~SsAI   70 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRK--LGIPIFVPH--S-AD----NWYD-PDLVIKTPAV   70 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHH--TTCCEESSC--C-TT----SCCC-CSEEEECTTC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHH--CCCeEEeee--c-cc----ccCC-CCEEEEecCc
Confidence            67888876 5555 468999999999999999886554433432  345554332  1 11    1345 8999988877


Q ss_pred             CCCCCCCCcceehHHHHHHHHHHHHhcCCC
Q 025456          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVN  175 (252)
Q Consensus       146 ~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~  175 (252)
                      ... +             --++++++.+++
T Consensus        71 ~~~-n-------------pel~~A~~~gIp   86 (89)
T d1j6ua1          71 RDD-N-------------PEIVRARMERVP   86 (89)
T ss_dssp             CTT-C-------------HHHHHHHHTTCC
T ss_pred             CCC-C-------------HHHHHHHHcCCC
Confidence            532 1             135667777763

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.64  E-value=0.0063  Score=47.49  Aligned_cols=34  Identities=29%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      +|+|+|.|| |.-|...+.+|+++|++|+++.+++
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            489999997 9999999999999999999998754

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.64  E-value=0.019  Score=39.90  Aligned_cols=30  Identities=23%  Similarity=0.314  Sum_probs=26.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEe
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAG   96 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~   96 (252)
                      ++|.|.|++|-.|+.|++.+.++|+++++.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~   30 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK   30 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence            579999999999999999888899987754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.63  E-value=0.0054  Score=42.38  Aligned_cols=35  Identities=26%  Similarity=0.173  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      .++++|.|| |+||..++..|.+.|.+|+++.|.+.
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence            479999997 99999999999999999999988754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.61  E-value=0.0073  Score=48.73  Aligned_cols=35  Identities=40%  Similarity=0.425  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      +|+|+|.|| |.-|..+|.+|+++|++|.++-++..
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            689999997 99999999999999999999887653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.57  E-value=0.011  Score=44.33  Aligned_cols=70  Identities=20%  Similarity=0.238  Sum_probs=47.8

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ..+.++++.|.|. |-||+.+++.|..-|.+|++.++.........    .++.       . .+++.+.+.. .|+|+.
T Consensus        45 ~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~----~~~~-------~-~~~l~~ll~~-sD~i~~  110 (193)
T d1mx3a1          45 ARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSDGVERA----LGLQ-------R-VSTLQDLLFH-SDCVTL  110 (193)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH----HTCE-------E-CSSHHHHHHH-CSEEEE
T ss_pred             eeeeCceEEEecc-ccccccceeeeeccccceeeccCcccccchhh----hccc-------c-ccchhhcccc-CCEEEE
Confidence            3467999999996 99999999999999999999887644321110    0111       1 2335666776 787776


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      +...
T Consensus       111 ~~pl  114 (193)
T d1mx3a1         111 HCGL  114 (193)
T ss_dssp             CCCC
T ss_pred             eecc
Confidence            6543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.56  E-value=0.027  Score=40.63  Aligned_cols=71  Identities=20%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ..+.+|+++|.| -|.+|+.+++.|...|.+|+++-.+|-+.-+..   -+++++.         .+.++++. .|++|-
T Consensus        19 ~~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~---mdGf~v~---------~~~~a~~~-aDi~vT   84 (163)
T d1v8ba1          19 FLISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAV---MEGFNVV---------TLDEIVDK-GDFFIT   84 (163)
T ss_dssp             CCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH---TTTCEEC---------CHHHHTTT-CSEEEE
T ss_pred             ceecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhHHHH---hcCCccC---------chhHcccc-CcEEEE
Confidence            345799999999 599999999999999999999988875443211   1333332         24566777 899998


Q ss_pred             cCCCC
Q 025456          142 ATGFQ  146 (252)
Q Consensus       142 ~ag~~  146 (252)
                      +.|..
T Consensus        85 aTGn~   89 (163)
T d1v8ba1          85 CTGNV   89 (163)
T ss_dssp             CCSSS
T ss_pred             cCCCC
Confidence            88754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.50  E-value=0.0081  Score=43.42  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~  100 (252)
                      +|+|+|.|| |++|..++..|.+.+.  +|+++.+++
T Consensus         2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            799999997 9999999999999874  788887664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.49  E-value=0.0081  Score=41.64  Aligned_cols=34  Identities=15%  Similarity=0.097  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++++|.|| |+||.+++..|.+.|.+|+++.+.+
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence            479999997 9999999999999999999998865

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.49  E-value=0.0072  Score=44.57  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~  100 (252)
                      +++|+|.|| |..|...|..|.++|+ +|+++.|..
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            689999997 9999999999999998 599888865

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.012  Score=43.51  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .+.|+|+|.|| |..|...+..|.++|++|+++.+.+
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            35799999997 9999999999999999999999865

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.40  E-value=0.007  Score=47.24  Aligned_cols=32  Identities=19%  Similarity=0.099  Sum_probs=29.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      -|+|.|| |.+|..++.+|+++|.+|+++.+..
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4999997 9999999999999999999998864

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.37  E-value=0.035  Score=38.46  Aligned_cols=88  Identities=15%  Similarity=0.166  Sum_probs=58.6

Q ss_pred             CCcEEEEEcCC---ChHHHHHHHHHHHCC-CeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           65 KQKKIFVAGAT---GSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGat---G~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      +-++|.|.|+|   +..|..+.+.|.+.| ++|+.+....+..        .++..+ -++.|       .-.. +|.++
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i--------~G~~~y-~sl~d-------lp~~-vDlvv   69 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV--------QGVKAY-KSVKD-------IPDE-IDLAI   69 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE--------TTEECB-SSTTS-------CSSC-CSEEE
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc--------CCeEee-cchhh-------cCCC-CceEE
Confidence            45899999999   899999999987766 6888765432211        122221 23433       1223 89888


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccc
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~  183 (252)
                      -+..              -..+..+++.|.+.|++.++.+|+-
T Consensus        70 i~vp--------------~~~~~~~~~~~~~~g~~~~vi~s~G   98 (129)
T d2csua1          70 IVVP--------------KRFVKDTLIQCGEKGVKGVVIITAG   98 (129)
T ss_dssp             ECSC--------------HHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred             EecC--------------hHHhHHHHHHHHHcCCCEEEEeccc
Confidence            6653              2345678888889999888888764

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.37  E-value=0.065  Score=38.75  Aligned_cols=100  Identities=13%  Similarity=0.158  Sum_probs=56.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEee-cCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGV-RDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~-r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      |+..+|.|.|. |.+|+..++.|.+. +.+++++. |+++..        .......  .    .+......+ +|+|+.
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~--------~~~~~~~--~----~~~~~~~~~-~D~Vvi   64 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLD--------TKTPVFD--V----ADVDKHADD-VDVLFL   64 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCS--------SSSCEEE--G----GGGGGTTTT-CSEEEE
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccccc--------ccccccc--c----hhhhhhccc-cceEEE
Confidence            34578999995 99999999999875 57776554 433211        1111111  1    122333455 899988


Q ss_pred             cCCCCC-----------CCC---CCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          142 ATGFQP-----------GWD---LFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       142 ~ag~~~-----------~~~---~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      +.....           ..+   .+.....+..-...+.+++++.+  +.++++
T Consensus        65 ~tp~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~--~~~~i~  116 (170)
T d1f06a1          65 CMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG--NVALVS  116 (170)
T ss_dssp             CSCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT--CEEECS
T ss_pred             eCCCcccHHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcC--ceEEEe
Confidence            765432           001   11223344455667777777766  344554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.30  E-value=0.02  Score=42.41  Aligned_cols=68  Identities=16%  Similarity=0.167  Sum_probs=47.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      ...++++.|.|. |.||+.+++.+..-|.+|++.++.........    ..++         ..++++.+.. .|+|+.+
T Consensus        41 ~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~----~~~~---------~~~l~ell~~-sDiv~~~  105 (184)
T d1ygya1          41 EIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ----LGIE---------LLSLDDLLAR-ADFISVH  105 (184)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH----HTCE---------ECCHHHHHHH-CSEEEEC
T ss_pred             cccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChhHHhh----cCce---------eccHHHHHhh-CCEEEEc
Confidence            456899999995 99999999999988999999887654332211    0111         1225566776 8887766


Q ss_pred             CCC
Q 025456          143 TGF  145 (252)
Q Consensus       143 ag~  145 (252)
                      ...
T Consensus       106 ~Pl  108 (184)
T d1ygya1         106 LPK  108 (184)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.26  E-value=0.013  Score=43.64  Aligned_cols=70  Identities=13%  Similarity=0.056  Sum_probs=47.2

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.++++.|.|. |.||+.+++.+..-|.+|...++..........   ...       .. .+++.+.+.. .|+|+.+
T Consensus        44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~---~~~-------~~-~~~l~~ll~~-sD~v~l~  110 (191)
T d1gdha1          44 KLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS---YQA-------TF-HDSLDSLLSV-SQFFSLN  110 (191)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH---HTC-------EE-CSSHHHHHHH-CSEEEEC
T ss_pred             eecccceEEeec-ccchHHHHHHHHhhccccccccccccccchhhc---ccc-------cc-cCCHHHHHhh-CCeEEec
Confidence            456899999996 999999999999999999988875432221110   000       01 2346667777 8888766


Q ss_pred             CCC
Q 025456          143 TGF  145 (252)
Q Consensus       143 ag~  145 (252)
                      ...
T Consensus       111 ~pl  113 (191)
T d1gdha1         111 APS  113 (191)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.19  E-value=0.018  Score=42.81  Aligned_cols=71  Identities=13%  Similarity=0.057  Sum_probs=47.0

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      ..+.++++.|.|. |.||+.+++.|..-|.+|...++..........   .++       .. ..++.+.+.. .|+|+.
T Consensus        40 ~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~---~~~-------~~-~~~l~~~l~~-sD~v~~  106 (188)
T d2naca1          40 YDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE---LNL-------TW-HATREDMYPV-CDVVTL  106 (188)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH---HTC-------EE-CSSHHHHGGG-CSEEEE
T ss_pred             eeccccceeeccc-cccchhhhhhhhccCceEEEEeecccccccccc---ccc-------cc-cCCHHHHHHh-ccchhh
Confidence            3457899999995 999999999999999999998876432211100   011       01 2335566776 787776


Q ss_pred             cCCC
Q 025456          142 ATGF  145 (252)
Q Consensus       142 ~ag~  145 (252)
                      +...
T Consensus       107 ~~pl  110 (188)
T d2naca1         107 NCPL  110 (188)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            5543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.10  E-value=0.039  Score=39.32  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=27.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC--CCeEEEeec
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVR   98 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r   98 (252)
                      .|+|.|.|+||-||....+-+.+.  .++|.+++-
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa   36 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA   36 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence            589999999999999999988775  478877753

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.008  Score=52.15  Aligned_cols=108  Identities=11%  Similarity=0.132  Sum_probs=64.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh----------------------ccccCCCCe--EEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSKDNPSL--QIVK  118 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------------------~~~~~~~~~--~~i~  118 (252)
                      +...+|+|.|+ |++|.++++-|+..|. ++++++.+.=...+                      .+....+.+  +.+.
T Consensus        23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~  101 (529)
T d1yova1          23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE  101 (529)
T ss_dssp             HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred             HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc
Confidence            45689999997 8999999999999995 67777654211110                      011112222  2232


Q ss_pred             eeCCCChHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeec
Q 025456          119 ADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (252)
Q Consensus       119 ~Dl~d~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~  187 (252)
                      .++.+..+...+.+.+ +|+||.+..             |......+-+.|++.++ .+|..++.+.||
T Consensus       102 ~~~~~~~~~~~~~~~~-~dvVv~~~~-------------~~~~~~~l~~~c~~~~i-p~i~~~~~G~~G  155 (529)
T d1yova1         102 ESPENLLDNDPSFFCR-FTVVVATQL-------------PESTSLRLADVLWNSQI-PLLICRTYGLVG  155 (529)
T ss_dssp             SCHHHHHHSCGGGGGG-CSEEEEESC-------------CHHHHHHHHHHHHHHTC-CEEEEEEETTEE
T ss_pred             CCchhhhhhHHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEeccCCEE
Confidence            2221100111234555 788886642             34455678888998887 588887766554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.98  E-value=0.027  Score=42.21  Aligned_cols=38  Identities=21%  Similarity=0.128  Sum_probs=33.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      .+.+++|.|.|. |.||+.+++.|..-|.+|++.++...
T Consensus        42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccceeeeeeec-ccccccccccccccceeeeccCCccc
Confidence            456899999995 99999999999999999999887643

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.041  Score=39.20  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC--CCeEEEeec
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVR   98 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r   98 (252)
                      ||++.|.|+||-||.....-+.+.  .++|.+++-
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa   35 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA   35 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            689999999999999999988876  367877653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.80  E-value=0.029  Score=43.03  Aligned_cols=71  Identities=11%  Similarity=0.137  Sum_probs=49.3

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      .++++++|+|-|- |-+|+++++.|.+.|.+|++.+.+...........  +...     .+ .+   +.+.-++|+++=
T Consensus        35 ~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~--g~~~-----~~-~~---~~~~~~cDIl~P  102 (230)
T d1leha1          35 DSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE--GADA-----VA-PN---AIYGVTCDIFAP  102 (230)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CCEE-----CC-GG---GTTTCCCSEEEE
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhc--CCcc-----cC-Cc---ccccccccEecc
Confidence            3568999999995 99999999999999999999888776654433211  1111     12 22   223334888888


Q ss_pred             cCC
Q 025456          142 ATG  144 (252)
Q Consensus       142 ~ag  144 (252)
                      ||-
T Consensus       103 cA~  105 (230)
T d1leha1         103 CAL  105 (230)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            874

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.78  E-value=0.056  Score=37.73  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=24.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCeEEEe
Q 025456           68 KIFVAGATGSSGKRIVEQLLAK-GFAVKAG   96 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~-G~~V~~~   96 (252)
                      ||.|.|++|-+|+.+++.+.+. ++++...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~   30 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE   30 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence            6899999999999999988775 6776654

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.73  E-value=0.093  Score=36.72  Aligned_cols=83  Identities=20%  Similarity=0.201  Sum_probs=54.1

Q ss_pred             CcEEEEEcCC---ChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           66 QKKIFVAGAT---GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        66 ~~~vlVtGat---G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .++|.|.|+|   +-.|..+++.|.+.|++|+.+......   .     .+...+ -++.       +.-.. +|.++-+
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~---i-----~G~~~~-~sl~-------dlp~~-iD~v~i~   81 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE---V-----LGRKCY-PSVL-------DIPDK-IEVVDLF   81 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE---E-----TTEECB-SSGG-------GCSSC-CSEEEEC
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc---c-----CCCccc-cccc-------ccCcc-ceEEEEE
Confidence            5899999999   789999999999999998876433211   1     111111 1222       22233 8888766


Q ss_pred             CCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEE
Q 025456          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (252)
Q Consensus       143 ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~  179 (252)
                      ..              -.....+++.|.+.|++.+++
T Consensus        82 vp--------------~~~~~~~~~e~~~~g~k~v~~  104 (139)
T d2d59a1          82 VK--------------PKLTMEYVEQAIKKGAKVVWF  104 (139)
T ss_dssp             SC--------------HHHHHHHHHHHHHHTCSEEEE
T ss_pred             eC--------------HHHHHHHHHHHHHhCCCEEEE
Confidence            43              334667788888888865555

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.70  E-value=0.025  Score=43.16  Aligned_cols=35  Identities=23%  Similarity=0.471  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      ..++|+|.|| |..|...+..|.++|++|+++.++.
T Consensus        48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence            5799999997 9999999999999999999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.51  E-value=0.033  Score=39.61  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=28.9

Q ss_pred             CcEEEEE-cCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVA-GATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVt-GatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      ++.++|. .+.|++|..++..|+++|.+|+++.+.+
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            4555554 4569999999999999999999998875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.36  E-value=0.016  Score=45.47  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=31.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~  102 (252)
                      +|+|.|| |-.|..++..|.++|++|.++.|+++.
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            7999998 899999999999999999999988643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.33  E-value=0.022  Score=45.02  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      +.|+|+|.|| |..|...+..|.++|++|+++.++.
T Consensus        29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3579999997 9999999999999999999998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.28  E-value=0.019  Score=44.56  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      |+|+|.|| |.-|...+.+|.++|++|+++-+++
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            57999997 9999999999999999999997753

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.25  E-value=0.022  Score=41.33  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      ++++|+|.|| |++|-.++..|.+.|.+|.++.+.
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEec
Confidence            4689999997 999999999999999886655444

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.053  Score=40.05  Aligned_cols=67  Identities=16%  Similarity=0.076  Sum_probs=47.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEc
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~  142 (252)
                      .+.++++.|.|- |.||+.+++.|..-|.+|+..++......       ...    ..    .+.+++.+.. .|+|+.+
T Consensus        41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------~~~----~~----~~~l~ell~~-sDii~i~  103 (188)
T d1sc6a1          41 EARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLPL-------GNA----TQ----VQHLSDLLNM-SDVVSLH  103 (188)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCC-------TTC----EE----CSCHHHHHHH-CSEEEEC
T ss_pred             cccceEEEEeec-ccchhhhhhhcccccceEeeccccccchh-------hhh----hh----hhhHHHHHhh-ccceeec
Confidence            456899999984 99999999999999999999887543211       111    11    1235667777 8988877


Q ss_pred             CCCC
Q 025456          143 TGFQ  146 (252)
Q Consensus       143 ag~~  146 (252)
                      +...
T Consensus       104 ~plt  107 (188)
T d1sc6a1         104 VPEN  107 (188)
T ss_dssp             CCSS
T ss_pred             ccCC
Confidence            6543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.19  E-value=0.024  Score=42.47  Aligned_cols=32  Identities=19%  Similarity=0.125  Sum_probs=29.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      -|+|.|| |.-|...|..|+++|++|.++.++.
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            3799995 9999999999999999999998864

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.18  E-value=0.06  Score=39.13  Aligned_cols=73  Identities=25%  Similarity=0.256  Sum_probs=46.1

Q ss_pred             CcEEEEEcCCChHHHH--HHHHHHHC----CCeEEEeecCchhhhhcc-------ccCCCCeEEEEeeCCCChHHHHHHH
Q 025456           66 QKKIFVAGATGSSGKR--IVEQLLAK----GFAVKAGVRDLDKAKTTL-------SKDNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~--l~~~L~~~----G~~V~~~~r~~~~~~~~~-------~~~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      .+||.|.|| |.+|..  ++..|+..    +.+++++++++++.+...       .......++...      .+..+++
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~------td~~eaL   74 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT------MNLDDVI   74 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE------SCHHHHH
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe------CChhhcc
Confidence            479999997 877764  44445542    358999999987654211       112233333322      2356688


Q ss_pred             cCCCcEEEEcCCCC
Q 025456          133 GDDSEAVVCATGFQ  146 (252)
Q Consensus       133 ~~~~d~vi~~ag~~  146 (252)
                      .+ .|+||+++++.
T Consensus        75 ~d-ad~Vv~~~~~g   87 (171)
T d1obba1          75 ID-ADFVINTAMVG   87 (171)
T ss_dssp             TT-CSEEEECCCTT
T ss_pred             cC-CCeEeeecccc
Confidence            88 99999988754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.98  E-value=0.027  Score=43.83  Aligned_cols=32  Identities=28%  Similarity=0.175  Sum_probs=29.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      -|+|.|| |..|..++.+|+++|++|+++.+..
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4899997 9999999999999999999998753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.98  E-value=0.026  Score=44.85  Aligned_cols=34  Identities=15%  Similarity=0.067  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      |..|+|.|| |.-|..+|++|++.|++|.++.++.
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCC
Confidence            457999997 9999999999999999999988764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.076  Score=36.50  Aligned_cols=75  Identities=19%  Similarity=0.188  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCC----------ChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC
Q 025456           65 KQKKIFVAGAT----------GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD  134 (252)
Q Consensus        65 ~~~~vlVtGat----------G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~  134 (252)
                      ..++|+|.|+.          -+.+.+.++.|.+.|++++++.-++........ ..+++-   .+-.. .+.+.+.+..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d-~aD~lY---fePlt-~e~v~~Ii~~   80 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPE-MADATY---IEPIH-WEVVRKIIEK   80 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGG-GSSEEE---CSCCC-HHHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChh-hcceee---eecCC-HHHHHHHHHH
Confidence            35899999983          367889999999999999999888876543221 112222   22222 4667777754


Q ss_pred             -CCcEEEEcCC
Q 025456          135 -DSEAVVCATG  144 (252)
Q Consensus       135 -~~d~vi~~ag  144 (252)
                       ++|.|+-..|
T Consensus        81 E~pd~il~~~G   91 (127)
T d1a9xa3          81 ERPDAVLPTMG   91 (127)
T ss_dssp             HCCSEEECSSS
T ss_pred             hCcCCeEEEee
Confidence             5999986655

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.66  E-value=0.032  Score=44.02  Aligned_cols=32  Identities=22%  Similarity=0.527  Sum_probs=28.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL  100 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~  100 (252)
                      .|+|.|| |-+|..++.+|+++|+ +|+++.|+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            6999997 9999999999999996 699998864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.048  Score=42.80  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      ..+|+|+|| |.-|...+.+|.++|++|+++-.+
T Consensus         5 ~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           5 TGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence            578999997 999999999999999999988654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.35  E-value=0.077  Score=38.82  Aligned_cols=33  Identities=18%  Similarity=0.401  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeecC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRD   99 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~   99 (252)
                      |-+|.|-| .|.||+.++|.|.+++ .+|+++...
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~   34 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKT   34 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECC
Confidence            46899998 6999999999999874 687776543

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.17  E-value=0.073  Score=38.58  Aligned_cols=74  Identities=11%  Similarity=-0.009  Sum_probs=43.0

Q ss_pred             cEEEEEcC-CChHHHHHHHHHHHCC----CeEEEeecCchhh--hh--c-----cccCCCCeEEEEeeCCCChHHHHHHH
Q 025456           67 KKIFVAGA-TGSSGKRIVEQLLAKG----FAVKAGVRDLDKA--KT--T-----LSKDNPSLQIVKADVTEGSAKLSEAI  132 (252)
Q Consensus        67 ~~vlVtGa-tG~iG~~l~~~L~~~G----~~V~~~~r~~~~~--~~--~-----~~~~~~~~~~i~~Dl~d~~~~~~~~~  132 (252)
                      +||.|.|| +.+.+..++..++...    .++++++.+++..  +.  .     ......+..+.  .-+|    ..+++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~--~~td----~~~al   75 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIH--LTLD----RRRAL   75 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEE--EESC----HHHHH
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceee--ecCC----chhhc
Confidence            57888886 4456666666555432    3788888876542  21  1     01011222222  2233    45678


Q ss_pred             cCCCcEEEEcCCCCC
Q 025456          133 GDDSEAVVCATGFQP  147 (252)
Q Consensus       133 ~~~~d~vi~~ag~~~  147 (252)
                      .+ .|+||++++...
T Consensus        76 ~g-aDvVv~ta~~~~   89 (169)
T d1s6ya1          76 DG-ADFVTTQFRVGG   89 (169)
T ss_dssp             TT-CSEEEECCCTTH
T ss_pred             CC-CCEEEEccccCC
Confidence            88 999999998754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.19  Score=34.06  Aligned_cols=74  Identities=15%  Similarity=0.142  Sum_probs=49.5

Q ss_pred             CcEEEEEcCCC----------hHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-
Q 025456           66 QKKIFVAGATG----------SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (252)
Q Consensus        66 ~~~vlVtGatG----------~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-  134 (252)
                      .++|+|.|+..          +.+.+.++.|.+.|++++++.-+|+...-... ..+++   ..+-.. .+.+.+.+.. 
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d-~aD~l---Yfeplt-~e~v~~Ii~~E   78 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYD-TSDRL---YFEPVT-LEDVLEIVRIE   78 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTT-SSSEE---ECCCCS-HHHHHHHHHHH
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChh-hcCce---EEccCC-HHHHHHHHHHh
Confidence            58999999843          67889999999999999999888876542111 11222   222122 4667766643 


Q ss_pred             CCcEEEEcCC
Q 025456          135 DSEAVVCATG  144 (252)
Q Consensus       135 ~~d~vi~~ag  144 (252)
                      ++|.|+-..|
T Consensus        79 ~p~~ii~~~G   88 (121)
T d1a9xa4          79 KPKGVIVQYG   88 (121)
T ss_dssp             CCSEEECSSS
T ss_pred             CCCEEEeehh
Confidence            5898886655

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.95  E-value=0.063  Score=43.02  Aligned_cols=36  Identities=33%  Similarity=0.287  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCC--CeEEEeecCch
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLD  101 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~  101 (252)
                      .+|+|+|.|| |.-|..++..|+++|  ++|+++-|+..
T Consensus         3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            3789999997 999999999999876  59999988754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.81  E-value=0.052  Score=40.80  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL  100 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~  100 (252)
                      ++|+|.|| |.-|...+..|.++|+ +|+++-++.
T Consensus         1 P~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            36999997 9999999999999996 699988764

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=92.69  E-value=0.088  Score=37.74  Aligned_cols=98  Identities=15%  Similarity=0.107  Sum_probs=57.4

Q ss_pred             cEEEEEcCCChHHHH-HHHHHHHC-CCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcCC
Q 025456           67 KKIFVAGATGSSGKR-IVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (252)
Q Consensus        67 ~~vlVtGatG~iG~~-l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~ag  144 (252)
                      ++|.|.|+ |.+|+. ....|.+. +.++++++++++..........  +..+.   +| .++   .++.++|+|+-+..
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~---~~-~~~---ll~~~iD~V~I~tp   71 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR--VSATC---TD-YRD---VLQYGVDAVMIHAA   71 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT--CCCCC---SS-TTG---GGGGCCSEEEECSC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcc--ccccc---cc-HHH---hcccccceeccccc
Confidence            58899996 888865 55666555 4677777777766554322111  11111   22 222   22223899887654


Q ss_pred             CCC---------CCC----CCCcceehHHHHHHHHHHHHhcCC
Q 025456          145 FQP---------GWD----LFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       145 ~~~---------~~~----~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      ...         ...    .+..+..|..-...+.+++++.+.
T Consensus        72 ~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          72 TDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             GGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            321         001    123356788889999999999885

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.56  E-value=0.011  Score=44.88  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=23.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAV   93 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V   93 (252)
                      |+|+|.|| |-+|..++.+|+++|++|
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCc
Confidence            57999997 999999999999999754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.50  E-value=0.089  Score=35.36  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHH---CCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLA---KGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~---~G~~V~~~~r~~  100 (252)
                      .++++|.|| |++|-+++..|.+   .|.+|.++.|.+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            479999997 9999999976654   488999998864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.41  E-value=0.08  Score=35.67  Aligned_cols=34  Identities=18%  Similarity=0.174  Sum_probs=27.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHH---CCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLA---KGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~---~G~~V~~~~r~~  100 (252)
                      .++++|.|| |++|-.++..|.+   +|.+|+++.|.+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            479999998 9999999966554   456899988764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.40  E-value=0.079  Score=37.63  Aligned_cols=30  Identities=23%  Similarity=0.477  Sum_probs=25.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      ||+|.|| |++|.+++..|. ++.+|+++.|.
T Consensus         2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKE   31 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHT-TTSEEEEECSS
T ss_pred             eEEEECC-cHHHHHHHHHHH-cCCCEEEEecc
Confidence            7899997 999999999885 47799998774

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.32  E-value=0.14  Score=37.02  Aligned_cols=75  Identities=19%  Similarity=0.183  Sum_probs=44.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC-----CCeEEEeecCchhhhh---cccc----CCCCeEEEEeeCCCChHHHHHHHc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK-----GFAVKAGVRDLDKAKT---TLSK----DNPSLQIVKADVTEGSAKLSEAIG  133 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~-----G~~V~~~~r~~~~~~~---~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~  133 (252)
                      ..+|.|.||++.-...++..|+..     +.++++.+.++++++.   .+..    ......+...      .+..+++.
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~eal~   76 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT------TDPEEAFT   76 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE------SCHHHHHS
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec------CChhhccC
Confidence            568889998543233344555542     2489999998877642   1110    1223333321      22556788


Q ss_pred             CCCcEEEEcCCCCC
Q 025456          134 DDSEAVVCATGFQP  147 (252)
Q Consensus       134 ~~~d~vi~~ag~~~  147 (252)
                      + .|+||..+|...
T Consensus        77 ~-AD~Vvitag~~~   89 (167)
T d1u8xx1          77 D-VDFVMAHIRVGK   89 (167)
T ss_dssp             S-CSEEEECCCTTH
T ss_pred             C-CCEEEECCCcCC
Confidence            8 999999998753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.20  E-value=0.082  Score=41.94  Aligned_cols=36  Identities=28%  Similarity=0.275  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      +.-.|+|+|| |..|...+.+|.++|.+|+++.+.++
T Consensus         6 ~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            3568999997 99999999999999999999987643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.1  Score=36.15  Aligned_cols=34  Identities=26%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHH----HCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLL----AKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~----~~G~~V~~~~r~~  100 (252)
                      .++++|.|| |++|-.++..|.    +.|.+|+++.+.+
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            579999997 999999998885    3588999888754

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.04  E-value=0.32  Score=34.20  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~  105 (252)
                      ||.+.|- |-+|..+++.|++.|+.| +..|..++..+
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~   37 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALR   37 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHH
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHH
Confidence            5788885 999999999999999866 46777665543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.04  E-value=0.09  Score=38.62  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=27.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDL  100 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~  100 (252)
                      |||+|.|| |++|..++..|.+.  +.+|+++.|..
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            57999997 89999999999886  45788887753

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.01  E-value=0.29  Score=35.35  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=54.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-CeEEEeec-CchhhhhccccCCCCeEEEEeeCCCC----------hHHHHHHHc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVR-DLDKAKTTLSKDNPSLQIVKADVTEG----------SAKLSEAIG  133 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r-~~~~~~~~~~~~~~~~~~i~~Dl~d~----------~~~~~~~~~  133 (252)
                      .++|.|-|- |.||+.+++.+.++. .+|+.+.. .++.....+..  .+...+..+-...          ...+...+.
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKE--LGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHH--TTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhh--cCceeecccccceeeecccCccccchhhhhhc
Confidence            468999995 999999999998865 57666543 33222111110  1122222221110          112334455


Q ss_pred             CCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEcc
Q 025456          134 DDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (252)
Q Consensus       134 ~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS  182 (252)
                      + +|+||-|.|...              +..-++.-.++|+ +.|++|+
T Consensus        79 ~-vDvViEcTG~f~--------------~~~~~~~hl~~G~-k~Vi~s~  111 (172)
T d2czca2          79 K-VDIIVDATPGGI--------------GAKNKPLYEKAGV-KAIFQGG  111 (172)
T ss_dssp             T-CSEEEECCSTTH--------------HHHHHHHHHHHTC-EEEECTT
T ss_pred             c-CCEEEECCCCCC--------------CHHHHHHHHHcCC-CEEEECC
Confidence            6 999999998532              2222344456787 6666665

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.88  E-value=0.11  Score=39.81  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=29.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCch
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD  101 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~  101 (252)
                      .+|+|.|| |..|..++..|.++|. +|.++-|+++
T Consensus         2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            58999997 9999999999999995 8888888654

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.29  Score=38.53  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=26.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      +++=--.||..|.+|++.|+.+|++|+++.+..
T Consensus        38 R~ItN~SSGk~G~alA~~~~~~Ga~V~li~g~~   70 (290)
T d1p9oa_          38 RFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR   70 (290)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             eEeCCCCchHHHHHHHHHHHHcCCEEEEEecCC
Confidence            333344579999999999999999999987653

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.71  E-value=0.19  Score=37.39  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh-hcccc------CCCCeEEEE-eeCCCChHHHHHHHcC-CCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-TTLSK------DNPSLQIVK-ADVTEGSAKLSEAIGD-DSE  137 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~------~~~~~~~i~-~Dl~d~~~~~~~~~~~-~~d  137 (252)
                      |+++|+| ++..|..+.+.|++.|++|.++.-.+++.. .....      ...++.++. .|+.+ ++ +.+.+.. ++|
T Consensus         1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~-~~-~~~~i~~~~~D   77 (203)
T d2blna2           1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNH-PL-WVERIAQLSPD   77 (203)
T ss_dssp             CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCS-HH-HHHHHHHTCCS
T ss_pred             CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccc-hh-hhhhhhhhccc
Confidence            5778886 467899999999999999977654333211 10000      112445544 34544 33 3344432 589


Q ss_pred             EEEEcC
Q 025456          138 AVVCAT  143 (252)
Q Consensus       138 ~vi~~a  143 (252)
                      ++|...
T Consensus        78 lii~~g   83 (203)
T d2blna2          78 VIFSFY   83 (203)
T ss_dssp             EEEEES
T ss_pred             ceeeee
Confidence            888765

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=91.71  E-value=0.14  Score=39.41  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      ++++++|+|-| -|-+|+++++.|.+.|.+|+.++..
T Consensus        28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeecc
Confidence            56799999999 5999999999999999999887743

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.092  Score=41.49  Aligned_cols=31  Identities=26%  Similarity=0.272  Sum_probs=28.2

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      |+|.|| |.-|...+.+|+++|++|+++-++.
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            789997 9999999999999999999998754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.33  E-value=0.3  Score=35.61  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=47.5

Q ss_pred             CCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEEcCCCCC
Q 025456           74 ATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQP  147 (252)
Q Consensus        74 atG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~~ag~~~  147 (252)
                      ||=|-|.|. +.+++++.+|++++|+++..+........++.++..+..+ .+.....+.. ++|.|+.-.|+..
T Consensus        25 ~T~G~GGhs-~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~-~~~~l~~~~~~~vdgIl~DLGvSs   97 (182)
T d1wg8a2          25 ATLGGAGHA-RGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH-LKRHLAALGVERVDGILADLGVSS   97 (182)
T ss_dssp             TTCTTSHHH-HHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG-HHHHHHHTTCSCEEEEEEECSCCH
T ss_pred             eCCCCcHHH-HHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHH-HHHHHHHcCCCccCEEEEEccCCH
Confidence            444444454 5566667799999999986543222234689999988877 5544433322 4999998888765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.27  E-value=0.09  Score=34.82  Aligned_cols=38  Identities=16%  Similarity=0.047  Sum_probs=31.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      ..++|+|+|.|+ |--|.-++..|++.+.+|+...|+..
T Consensus        29 ~f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          29 LFVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             GGTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             hcCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            457999999997 89999999999988877776666543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.72  E-value=0.19  Score=39.56  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=31.6

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR   98 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r   98 (252)
                      ++++++|+|-|- |-+|+++++.|.+.|.+|+.++.
T Consensus        33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             SSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            467899999996 99999999999999999998764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.64  E-value=0.054  Score=39.35  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=24.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEee
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGV   97 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~   97 (252)
                      .+|+|.|| |++|-+++..|.+.|.+|.++.
T Consensus         4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~   33 (183)
T d1d7ya1           4 APVVVLGA-GLASVSFVAELRQAGYQGLITV   33 (183)
T ss_dssp             SSEEEECC-SHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCEEEECc-cHHHHHHHHHHHhcCCceEEEE
Confidence            45899996 9999999999999997654443

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.62  E-value=0.59  Score=33.64  Aligned_cols=99  Identities=19%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC-CCeEEEe-ecCchhhhhcccc--CCCCeEEEEeeCCCChHHHHHHHcC-CCcEEEE
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAG-VRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~-~r~~~~~~~~~~~--~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi~  141 (252)
                      .++.|.|+ |.+|+..++.|... +.+|+++ ++++++.+.....  ......++    .|    +++.+.. ++|+|+-
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~----~~----~~~ll~~~~iD~v~I   72 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIH----GS----YESLLEDPEIDALYV   72 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEE----SS----HHHHHHCTTCCEEEE
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeec----Cc----HHHhhhccccceeee
Confidence            57899995 88999999988775 5677755 5666554432211  11122221    12    3344433 4899987


Q ss_pred             cCCCCC---------CCC----CCCcceehHHHHHHHHHHHHhcCC
Q 025456          142 ATGFQP---------GWD----LFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       142 ~ag~~~---------~~~----~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      +.....         ...    .+..+..|..-...+++.+++.++
T Consensus        73 ~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~  118 (184)
T d1ydwa1          73 PLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV  118 (184)
T ss_dssp             CCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred             cccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCC
Confidence            654321         001    123345788888999999988875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.62  E-value=0.19  Score=35.63  Aligned_cols=34  Identities=24%  Similarity=0.193  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCe-EEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~  100 (252)
                      +++|+|.|| |..|...+..+++.|.+ |+++.|..
T Consensus        45 ~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            578999997 99999999999999975 77777754

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.46  E-value=0.14  Score=38.70  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=29.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      -|+|.|| |-.|...+..|+++|++|+++.+...
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4889997 89999999999999999999988653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.18  Score=37.92  Aligned_cols=74  Identities=4%  Similarity=-0.010  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc---------------------cCCCCeEEEEeeCCC
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---------------------KDNPSLQIVKADVTE  123 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---------------------~~~~~~~~i~~Dl~d  123 (252)
                      .+.+||..|+..  |+ .+..|+++|++|++++-++...+....                     ....+++++.+|+.+
T Consensus        45 ~~~rvLd~GCG~--G~-~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          45 SGLRVFFPLCGK--AV-EMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CSCEEEETTCTT--CT-HHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCEEEEeCCCC--cH-HHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            478999999854  43 567788999999999998865532110                     123467888888766


Q ss_pred             ChHHHHHHHcCCCcEEEEcCCC
Q 025456          124 GSAKLSEAIGDDSEAVVCATGF  145 (252)
Q Consensus       124 ~~~~~~~~~~~~~d~vi~~ag~  145 (252)
                       ..   ....+.+|+|+.....
T Consensus       122 -l~---~~~~~~fd~i~~~~~l  139 (229)
T d2bzga1         122 -LP---RTNIGKFDMIWDRGAL  139 (229)
T ss_dssp             -GG---GSCCCCEEEEEESSST
T ss_pred             -cc---ccccCceeEEEEEEEE
Confidence             21   1112237777765543

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=90.19  E-value=1.5  Score=31.98  Aligned_cols=94  Identities=22%  Similarity=0.398  Sum_probs=59.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhccccCCCCeEEEEe-eCCC-----------------Ch
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKA-DVTE-----------------GS  125 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~-Dl~d-----------------~~  125 (252)
                      .++.|.|- |+-|..++.+|.+.|.   +.+++.-+...+..    .....++.-+ +++.                 ..
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~----~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~   75 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEA----SNADVKIQIGENITRGLGAGGRPEIGEQAALESE   75 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHT----CCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTH
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCHHHHhc----CCcceEEecccccCCCcccccCchhhHhHHHHHH
Confidence            36788886 9999999999998764   44555555444332    1112222222 1111                 03


Q ss_pred             HHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCC
Q 025456          126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       126 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      +.+.+.+++ .|.||-+||....        +--.++-.+.+.+++.++
T Consensus        76 ~~I~~~l~~-~d~vfi~AGlGGg--------TGtgaapviA~~ake~g~  115 (194)
T d1w5fa1          76 EKIREVLQD-THMVFITAGFGGG--------TGTGASPVIAKIAKEMGI  115 (194)
T ss_dssp             HHHHHHTTT-CSEEEEEEETTSS--------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcC-CCeEEEEEecCCC--------cccchHHHHHHHHHHcCC
Confidence            567778888 9999999987652        123346678888999886

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.18  E-value=1.2  Score=32.95  Aligned_cols=95  Identities=24%  Similarity=0.344  Sum_probs=60.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhccccCCCCeEEEEee-CCC-----------------C
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKAD-VTE-----------------G  124 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~D-l~d-----------------~  124 (252)
                      ..++.|.|- |+-|..++.+|.+.|.   +.+++.-+...+...    .....+..+. ++.                 .
T Consensus        15 ~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~----~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~   89 (209)
T d2vapa1          15 KAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRT----KADKKILIGKKLTRGLGAGGNPKIGEEAAKES   89 (209)
T ss_dssp             CCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTS----CCSEEEECCTTTTTTBCCTTCHHHHHHHHHHT
T ss_pred             CCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcC----CcchhcccccccccccccccchHHHHHHHHHH
Confidence            578999996 9999999999998874   445555444333321    1122222211 111                 0


Q ss_pred             hHHHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCC
Q 025456          125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       125 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      .+.+.+.+++ .|.||-+||....        +--.++-.+.+.+++.++
T Consensus        90 ~~~I~~~l~~-~d~vfi~AGlGGG--------TGsgaapvia~~ake~g~  130 (209)
T d2vapa1          90 AEEIKAAIQD-SDMVFITCGLGGG--------TGTGSAPVVAEISKKIGA  130 (209)
T ss_dssp             HHHHHHHHTT-CSEEEEEEETTSS--------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccC-CCEEEEEEeCCCC--------ccccHHHHHHHHHHHcCC
Confidence            2567788888 9999999987652        123345668888899886

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.88  E-value=0.26  Score=36.45  Aligned_cols=71  Identities=17%  Similarity=0.138  Sum_probs=48.0

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .+..|++|+=.|+..|+   +.-.++..|. +|++++.++...+.... ...+++++.+|+.+ .       .+++|+||
T Consensus        45 ~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~-N~~~~~~~~~D~~~-l-------~~~fD~Vi  112 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKR-NCGGVNFMVADVSE-I-------SGKYDTWI  112 (197)
T ss_dssp             TSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHH-HCTTSEEEECCGGG-C-------CCCEEEEE
T ss_pred             CCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHH-ccccccEEEEehhh-c-------CCcceEEE
Confidence            45679999998865442   2234566664 69999988776543222 33578999999876 2       23599999


Q ss_pred             EcCC
Q 025456          141 CATG  144 (252)
Q Consensus       141 ~~ag  144 (252)
                      .|-.
T Consensus       113 ~NPP  116 (197)
T d1ne2a_         113 MNPP  116 (197)
T ss_dssp             ECCC
T ss_pred             eCcc
Confidence            8743

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=89.80  E-value=1.1  Score=32.09  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=25.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCC-CeEEEee
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGV   97 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~   97 (252)
                      |++|.|-| -|.||+.+++.|.+++ .+|+.+.
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaIn   32 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVS   32 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEe
Confidence            57899998 6999999999998876 4666554

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.73  E-value=0.24  Score=37.73  Aligned_cols=35  Identities=23%  Similarity=0.184  Sum_probs=29.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHH-CCCeEEEeec
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVR   98 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r   98 (252)
                      ++++++|+|-| .|-+|+++++.|.+ .|..|+.++.
T Consensus        28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeec
Confidence            45789999998 59999999999976 5999887764

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=89.55  E-value=0.19  Score=38.83  Aligned_cols=35  Identities=17%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeec
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR   98 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r   98 (252)
                      ++++++|+|-| .|-+|+++++.|.+.|.+|+.++.
T Consensus        33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          33 TLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             CSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence            56799999999 599999999999999999988764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=89.04  E-value=0.2  Score=40.25  Aligned_cols=31  Identities=16%  Similarity=0.042  Sum_probs=27.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      -|+|+|+ |+-|..+|.+|+++|++|.++-+-
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcCeEEEEecC
Confidence            3788995 999999999999999999999873

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.99  E-value=0.21  Score=39.09  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=29.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      -|+|.|| |..|...+.+|+++|.+|+++.+.+
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            5899997 9999999999999999999998764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.55  E-value=0.4  Score=35.21  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=54.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHc-CCCcEEEEcC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIG-DDSEAVVCAT  143 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~-~~~d~vi~~a  143 (252)
                      .+=+|-|+|+...++.+.+ . +.+|+++++++...+.   .+.....++.++.++..+ .+.+.+.+. +.+|.|+.-.
T Consensus        27 ~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~-~~~~~~~~~~~~vdgIl~Dl  103 (192)
T d1m6ya2          27 ILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE-ADFLLKTLGIEKVDGILMDL  103 (192)
T ss_dssp             EEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG-HHHHHHHTTCSCEEEEEEEC
T ss_pred             EEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccccccccchhHHHhh-HHHHHHHcCCCCcceeeecc
Confidence            3346778888888887765 3 4689999999876542   222235689999999887 555555543 2499999888


Q ss_pred             CCCC
Q 025456          144 GFQP  147 (252)
Q Consensus       144 g~~~  147 (252)
                      |+..
T Consensus       104 GvSs  107 (192)
T d1m6ya2         104 GVST  107 (192)
T ss_dssp             SCCH
T ss_pred             chhH
Confidence            8754

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=88.52  E-value=0.16  Score=36.22  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCChHHHHHH-HHHHHCC-CeEEEe-ecCch
Q 025456           66 QKKIFVAGATGSSGKRIV-EQLLAKG-FAVKAG-VRDLD  101 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~-~~L~~~G-~~V~~~-~r~~~  101 (252)
                      ..+|.|.| +|++|..+. +.|.+.. .+++++ +|+.+
T Consensus         4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~   41 (157)
T d1nvmb1           4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAA   41 (157)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTT
T ss_pred             CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchh
Confidence            47899999 899998754 4443443 466665 56654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=88.46  E-value=0.17  Score=35.50  Aligned_cols=37  Identities=22%  Similarity=0.156  Sum_probs=24.6

Q ss_pred             EEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc
Q 025456           70 FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (252)
Q Consensus        70 lVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~  107 (252)
                      -+.| +|-+|+++++.|.+.++.+.+..|++++.+++.
T Consensus         3 gfIG-~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~   39 (153)
T d2i76a2           3 NFVG-TGTLTRFFLECLKDRYEIGYILSRSIDRARNLA   39 (153)
T ss_dssp             EEES-CCHHHHHHHHTTC----CCCEECSSHHHHHHHH
T ss_pred             EEEe-CcHHHHHHHHHHHhCCCEEEEEeCChhhhcchh
Confidence            3566 599999999987664443457789988776543

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=87.91  E-value=0.5  Score=37.95  Aligned_cols=128  Identities=11%  Similarity=0.083  Sum_probs=75.3

Q ss_pred             CcEEE-EEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccc----cCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           66 QKKIF-VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        66 ~~~vl-VtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      +.+|+ ..+|+|.+|..|+    +++.+|+++.-+++..+....    ..-.+++++.+|+.+.......... .+|+||
T Consensus       213 ~~~vlDLycG~G~fsl~La----~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~-~~d~vi  287 (358)
T d1uwva2         213 EDRVLDLFCGMGNFTLPLA----TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN-GFDKVL  287 (358)
T ss_dssp             TCEEEEESCTTTTTHHHHH----TTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTT-CCSEEE
T ss_pred             CceEEEecccccccchhcc----ccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhc-cCceEE
Confidence            34444 7899999998764    567899999888766543221    1346789999988662221222223 389887


Q ss_pred             EcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCCCEEEEEccceeeccCCCCCCCcchhccchhhHHHHHHHHHHHHHHH
Q 025456          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (252)
Q Consensus       141 ~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~SS~~v~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (252)
                      -.-.  ..            |...+++.+.+.+.++|||+|=.                   |.+   .++-. .. +.+
T Consensus       288 lDPP--R~------------G~~~~~~~l~~~~~~~ivYVSCn-------------------p~T---laRDl-~~-l~~  329 (358)
T d1uwva2         288 LDPA--RA------------GAAGVMQQIIKLEPIRIVYVSCN-------------------PAT---LARDS-EA-LLK  329 (358)
T ss_dssp             ECCC--TT------------CCHHHHHHHHHHCCSEEEEEESC-------------------HHH---HHHHH-HH-HHH
T ss_pred             eCCC--Cc------------cHHHHHHHHHHcCCCEEEEEeCC-------------------HHH---HHHHH-HH-HHH
Confidence            5421  11            11235555666677899999842                   111   22222 12 335


Q ss_pred             cCCcEEEEeCCcccCC
Q 025456          221 SGINYTIIRPGGLRNE  236 (252)
Q Consensus       221 ~gi~~~~lrPg~i~~~  236 (252)
                      .|....-++|-..+-.
T Consensus       330 ~gy~l~~i~~~D~FP~  345 (358)
T d1uwva2         330 AGYTIARLAMLDMFPH  345 (358)
T ss_dssp             TTCEEEEEEEECCSTT
T ss_pred             CCCeEeEEEEEecCCC
Confidence            6888888888655443

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=87.87  E-value=0.26  Score=35.44  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---cc-------------CCCCeEEEEeeCCCChHHH
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SK-------------DNPSLQIVKADVTEGSAKL  128 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~-------------~~~~~~~i~~Dl~d~~~~~  128 (252)
                      .+.+||..|+.-  |+ .+..|+++|++|++++.++...+...   ..             ......++.+|..+ ... 
T Consensus        20 ~~~rvLd~GCG~--G~-~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-l~~-   94 (201)
T d1pjza_          20 PGARVLVPLCGK--SQ-DMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA-LTA-   94 (201)
T ss_dssp             TTCEEEETTTCC--SH-HHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS-STH-
T ss_pred             CCCEEEEecCcC--CH-HHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc-ccc-
Confidence            478999999844  44 55688889999999999876543211   10             12456788888877 221 


Q ss_pred             HHHHcCCCcEEEEcC
Q 025456          129 SEAIGDDSEAVVCAT  143 (252)
Q Consensus       129 ~~~~~~~~d~vi~~a  143 (252)
                       ..... .|.|+...
T Consensus        95 -~~~~~-~D~i~~~~  107 (201)
T d1pjza_          95 -RDIGH-CAAFYDRA  107 (201)
T ss_dssp             -HHHHS-EEEEEEES
T ss_pred             -ccccc-eeEEEEEe
Confidence             11223 67776543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.80  E-value=0.23  Score=39.27  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=29.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHH-----HCCCeEEEeecCch
Q 025456           67 KKIFVAGATGSSGKRIVEQLL-----AKGFAVKAGVRDLD  101 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~-----~~G~~V~~~~r~~~  101 (252)
                      --|+|.|| |-.|..++..|+     ++|++|+++.|.+.
T Consensus         8 yDV~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           8 CDVLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            46899997 999999999997     46999999988754

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=87.62  E-value=0.41  Score=35.88  Aligned_cols=107  Identities=15%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             CcEEEEEcCCChHHH-HHHHHHHHC-CCeEEE-eecCchhhhhccccCC-CCeEEEEeeCCCChHHHHHHHcC-CCcEEE
Q 025456           66 QKKIFVAGATGSSGK-RIVEQLLAK-GFAVKA-GVRDLDKAKTTLSKDN-PSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (252)
Q Consensus        66 ~~~vlVtGatG~iG~-~l~~~L~~~-G~~V~~-~~r~~~~~~~~~~~~~-~~~~~i~~Dl~d~~~~~~~~~~~-~~d~vi  140 (252)
                      .-+|.|.|+ |.+|. +++..+... +.+|+. .+|++++.+....... +...+.  ...|    +++.+.. ++|+|+
T Consensus        33 ~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~--~~~d----~~ell~~~~iD~V~  105 (221)
T d1h6da1          33 RFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY--DYSN----FDKIAKDPKIDAVY  105 (221)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEE--CSSS----GGGGGGCTTCCEEE
T ss_pred             CEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcccccccc--ccCc----hhhhcccccceeee
Confidence            469999996 89996 566665554 677774 4677766554322111 000110  1122    3344443 489888


Q ss_pred             EcCCCCC-----------CC--CCCCcceehHHHHHHHHHHHHhcCCCEEEEEc
Q 025456          141 CATGFQP-----------GW--DLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (252)
Q Consensus       141 ~~ag~~~-----------~~--~~~~~~~~n~~g~~~ll~~~~~~~~~~~v~~S  181 (252)
                      -+.....           ..  --+..+..|..-...+.+.+++.++  +++++
T Consensus       106 I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~--~~~v~  157 (221)
T d1h6da1         106 IILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK--KLMIG  157 (221)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC--CEEEC
T ss_pred             eccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCC--cEEEe
Confidence            7654321           00  0123356788889999999998875  44444

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=87.31  E-value=1.6  Score=31.19  Aligned_cols=100  Identities=15%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             CCcEEEEEcCCChHHHHH-HHHHHHCC--CeEEEe-ecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcC-CCcEE
Q 025456           65 KQKKIFVAGATGSSGKRI-VEQLLAKG--FAVKAG-VRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAV  139 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l-~~~L~~~G--~~V~~~-~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~-~~d~v  139 (252)
                      +..+|.|.|+ |.+|+.. +..+.+.+  .+|+++ ++++++.+....... ...+ .   .|    +++.+.. ++|+|
T Consensus         2 kkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~-~~~~-~---~~----~~ell~~~~id~v   71 (181)
T d1zh8a1           2 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG-NPAV-F---DS----YEELLESGLVDAV   71 (181)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS-SCEE-E---SC----HHHHHHSSCCSEE
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccc-ccce-e---ee----eecccccccccee
Confidence            4568999995 8999864 56666543  466644 566655543222111 1111 1   22    3344543 48999


Q ss_pred             EEcCCCCC---------CCC----CCCcceehHHHHHHHHHHHHhcCC
Q 025456          140 VCATGFQP---------GWD----LFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       140 i~~ag~~~---------~~~----~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      +-+.....         ...    -+..+..|..-...+.+.+++.++
T Consensus        72 ~I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~  119 (181)
T d1zh8a1          72 DLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEK  119 (181)
T ss_dssp             EECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSS
T ss_pred             eccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCC
Confidence            87654321         000    123346788888899999998875

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.29  E-value=0.31  Score=37.64  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~  100 (252)
                      ..-|+|.|| |.-|...+.+|+++ |++|.++.+.+
T Consensus        33 e~DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHccCCeEEEEecCC
Confidence            356999998 99999999999875 99999999875

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=87.17  E-value=0.33  Score=39.38  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=23.3

Q ss_pred             cEEEEEcC------CChHH---HHHHHHHHHCCCeEEEeec
Q 025456           67 KKIFVAGA------TGSSG---KRIVEQLLAKGFAVKAGVR   98 (252)
Q Consensus        67 ~~vlVtGa------tG~iG---~~l~~~L~~~G~~V~~~~r   98 (252)
                      |+|++++.      +||+|   ..|++.|.++||+|+++..
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp   41 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP   41 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence            45666553      46666   5668999999999998863

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=86.99  E-value=0.34  Score=36.79  Aligned_cols=35  Identities=23%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchh
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~  102 (252)
                      .-|+|.|| |-.|...+.+|+++|.+|.++.+.+..
T Consensus         5 ~DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45899997 999999999999999999999987643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.95  E-value=0.36  Score=35.54  Aligned_cols=31  Identities=16%  Similarity=0.156  Sum_probs=28.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      -|+|.|| |..|...+..+++.|.+|.++.++
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCEEEEEecc
Confidence            3789997 999999999999999999999875

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=86.82  E-value=0.41  Score=37.56  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             cEEEEEcC-C-ChH--HHHHHHHHHHCCCeEEEeecC
Q 025456           67 KKIFVAGA-T-GSS--GKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        67 ~~vlVtGa-t-G~i--G~~l~~~L~~~G~~V~~~~r~   99 (252)
                      |+|+|++| | |-+  ..+|+++|.++|++|..+...
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            46666654 3 222  335889999999999876643

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.58  E-value=0.33  Score=39.00  Aligned_cols=32  Identities=19%  Similarity=0.214  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      =-|+|+|+ |.-|..+|.+|+++|.+|.++-+-
T Consensus         8 ~dvIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           8 VPALVIGS-GYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCCeEEEEeCC
Confidence            35789995 999999999999999999999763

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.14  E-value=0.67  Score=35.22  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=30.3

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHC-CCeEEEeecC
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRD   99 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~   99 (252)
                      ++++++|+|-|- |-+|.++++.|+++ |..|+.+...
T Consensus        29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence            367999999996 99999999999875 8998877643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=86.06  E-value=0.36  Score=37.99  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      -|+|.|+ |..|...+..|+++|.+|+++.+.+
T Consensus        25 DVvVIG~-G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGS-GGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECS-SHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4899996 9999999999999999999998764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.89  E-value=0.4  Score=38.16  Aligned_cols=31  Identities=19%  Similarity=0.367  Sum_probs=27.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      -|+|+|+ |.-|.-++.+|++.|++|.++-+-
T Consensus         6 DviIVGs-G~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGS-GPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHhhCCCeEEEEecC
Confidence            4889995 999999999999999999998653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=0.3  Score=35.32  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      +++.|+|.|| |-.|..-+..|++.|.+|+++.|..
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEEeec
Confidence            4689999997 9999999999999999999987654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.76  E-value=0.43  Score=36.02  Aligned_cols=71  Identities=10%  Similarity=0.071  Sum_probs=49.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      ...++||=.|+..|.   ++..|+++|.+|++++.++.-.+.   .......+++++.+|+.+ .+     +.+++|+|+
T Consensus        36 ~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~-~~-----~~~~fD~i~  106 (246)
T d1y8ca_          36 LVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LN-----INRKFDLIT  106 (246)
T ss_dssp             CCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CC-----CSCCEEEEE
T ss_pred             CCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhh-hc-----ccccccccc
Confidence            346899999986553   667888899999999998765432   122234578999999877 22     233489888


Q ss_pred             EcC
Q 025456          141 CAT  143 (252)
Q Consensus       141 ~~a  143 (252)
                      ...
T Consensus       107 ~~~  109 (246)
T d1y8ca_         107 CCL  109 (246)
T ss_dssp             ECT
T ss_pred             eee
Confidence            643

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=85.56  E-value=0.98  Score=31.71  Aligned_cols=96  Identities=17%  Similarity=0.158  Sum_probs=55.8

Q ss_pred             cEEEEEcCCChHHHH-HHHHHHHC-CCeEEEe-ecCchhhhhccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEEcC
Q 025456           67 KKIFVAGATGSSGKR-IVEQLLAK-GFAVKAG-VRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (252)
Q Consensus        67 ~~vlVtGatG~iG~~-l~~~L~~~-G~~V~~~-~r~~~~~~~~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~~a  143 (252)
                      +++.|.|. |.+|.. ....|... +.+++++ ++++++........  +     .+..+   .+++...+ +|+|+-+.
T Consensus         2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~--~-----~~~~~---~~~~l~~~-~D~V~I~t   69 (164)
T d1tlta1           2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW--R-----IPYAD---SLSSLAAS-CDAVFVHS   69 (164)
T ss_dssp             EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH--T-----CCBCS---SHHHHHTT-CSEEEECS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc--c-----ccccc---cchhhhhh-cccccccc
Confidence            57899995 899975 45555553 6777655 46665544332211  1     12233   23344566 99988775


Q ss_pred             CCCC---------CCC----CCCcceehHHHHHHHHHHHHhcCC
Q 025456          144 GFQP---------GWD----LFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       144 g~~~---------~~~----~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      ....         ...    .+..+..|..-...+++++++.++
T Consensus        70 p~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~  113 (164)
T d1tlta1          70 STASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKL  113 (164)
T ss_dssp             CTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred             cchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCC
Confidence            3221         000    123345677778888898888875

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.56  E-value=0.31  Score=36.23  Aligned_cols=35  Identities=29%  Similarity=0.344  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCChHHH-----HHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGK-----RIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~-----~l~~~L~~~G~~V~~~~r~~  100 (252)
                      ||.|.|+++-||+|+     +++..|+++|.+|.+++-++
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            588999999888886     55667888899999988764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.56  E-value=0.35  Score=37.16  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCChHHHHH-----HHHHHHCCCeEEEeecCch
Q 025456           65 KQKKIFVAGATGSSGKRI-----VEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l-----~~~L~~~G~~V~~~~r~~~  101 (252)
                      .+++|+|+.|=||+|+-.     +..|+++|++|.+++-++.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            478888998899999865     6888899999999998864

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.50  E-value=4.2  Score=29.61  Aligned_cols=93  Identities=19%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhccccCCCCeEEEEee-CC-------C----------ChH
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKAD-VT-------E----------GSA  126 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~D-l~-------d----------~~~  126 (252)
                      ++-|.|- |+-|..++.+|.++|.   +.+++.-+...+...    ....++..+. ++       |          ..+
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~~----~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~~   77 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMS----DADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKD   77 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHHC----CCSEEEECCTTTC-----CCCHHHHHHHHHHTHH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchHHHHhcC----CcchhhccccccccCCCcCcChhhhHhhHHHHHH
Confidence            3556774 7889999999999874   445444443333221    1122222221 11       1          146


Q ss_pred             HHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCC
Q 025456          127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       127 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      .+++.+++ .|.||-.||....        +--.++--+.+.|++.++
T Consensus        78 ~I~~~l~~-~d~vfi~AGlGGg--------TGtGaaPviA~iake~g~  116 (198)
T d1rq2a1          78 EIEELLRG-ADMVFVTAGEGGG--------TGTGGAPVVASIARKLGA  116 (198)
T ss_dssp             HHHHHHTT-CSEEEEEEETTSS--------HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcC-CCEEEEEEecCCC--------CCcchHHHHHHHHHHcCC
Confidence            78888888 9999999987653        123345668888999886

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.50  E-value=0.46  Score=35.30  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHC--CCeEEEeecCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDL  100 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~  100 (252)
                      ++|+|.|| |--|...|+.|.++  |++|+++.+.+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            48999997 99999999999875  78999988764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.22  E-value=0.29  Score=37.59  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCChHHHHH-----HHHHHHCCCeEEEeecCch
Q 025456           66 QKKIFVAGATGSSGKRI-----VEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l-----~~~L~~~G~~V~~~~r~~~  101 (252)
                      ||+|.|+| =||+|+-.     +..|+++|++|.+++-++.
T Consensus         1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            58899997 78888754     5588889999999998863

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.13  E-value=1.3  Score=31.22  Aligned_cols=73  Identities=21%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             cEEEEEcCCChHHHHHH-HHHHHC-----CCeEEEeecCchhhhhcccc----CCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           67 KKIFVAGATGSSGKRIV-EQLLAK-----GFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~-~~L~~~-----G~~V~~~~r~~~~~~~~~~~----~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      +||.|.|| |.+|..++ ..|++.     +.++++++.++++.......    ......+..   +.   ...+.+.+ .
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~---t~---~~~~~l~~-a   72 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---SD---TFEGAVVD-A   72 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---CS---SHHHHHTT-C
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE---ec---CcccccCC-C
Confidence            57999998 44565544 223321     35899999988765432110    112222222   22   13467788 9


Q ss_pred             cEEEEcCCCCC
Q 025456          137 EAVVCATGFQP  147 (252)
Q Consensus       137 d~vi~~ag~~~  147 (252)
                      |+||..+|...
T Consensus        73 DvVVita~~~~   83 (162)
T d1up7a1          73 KYVIFQFRPGG   83 (162)
T ss_dssp             SEEEECCCTTH
T ss_pred             CEEEEecccCC
Confidence            99999998753

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.08  E-value=1  Score=33.35  Aligned_cols=76  Identities=9%  Similarity=0.093  Sum_probs=45.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh---ccc-cCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLS-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .+.+||-.|+..|--..+..++......|++++.++...+.   .+. ....++.++.+|..+..    ..-. .+|.|+
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~----~~~~-~fD~I~  149 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV----PEFS-PYDVIF  149 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC----GGGC-CEEEEE
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc----cccc-chhhhh
Confidence            47788877765444444444444445589999988765432   111 13457888888875511    1112 389998


Q ss_pred             EcCCC
Q 025456          141 CATGF  145 (252)
Q Consensus       141 ~~ag~  145 (252)
                      .+++.
T Consensus       150 ~~~~~  154 (213)
T d1dl5a1         150 VTVGV  154 (213)
T ss_dssp             ECSBB
T ss_pred             hhccH
Confidence            87764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.99  E-value=0.43  Score=35.44  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCChHHHH-----HHHHHHHCCCeEEEeecC
Q 025456           66 QKKIFVAGATGSSGKR-----IVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~-----l~~~L~~~G~~V~~~~r~   99 (252)
                      +|.|.|+|+-||+|+-     ++..|+++|.+|.+++-+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            6789999999998874     566777889999999854

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.89  E-value=0.57  Score=34.56  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCch
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~  101 (252)
                      .+++|+|+|.|+ |--|-.++..+++.+.+++.+.|...
T Consensus        29 ~~~gK~V~VvG~-G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          29 DFSGQRVGVIGT-GSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             CCBTCEEEEECC-SHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCCCEEEEECC-CccHHHHHHHHHhhhccccccccccc
Confidence            457999999996 89999999999999999888888753

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.85  E-value=3.9  Score=29.75  Aligned_cols=93  Identities=19%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC---eEEEeecCchhhhhccccCCCCeEEEEee-CC-------C----------ChH
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKAD-VT-------E----------GSA  126 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~i~~D-l~-------d----------~~~  126 (252)
                      +|.|.|- |+-|..++.+|.+.|.   +.+++.-+...+..    .....++.-++ ++       |          ..+
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~----~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~~   77 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDAQALKN----IAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRE   77 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSS----CSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTHH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhc----CCccceeccccccccCCCCCCChHHHHHHHHHHHH
Confidence            4667775 8999999999999874   45555544333321    11122222221 11       1          036


Q ss_pred             HHHHHHcCCCcEEEEcCCCCCCCCCCCcceehHHHHHHHHHHHHhcCC
Q 025456          127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (252)
Q Consensus       127 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~  174 (252)
                      .+.+.+++ .|.||-+||.....        --.++-.+.+.+++.++
T Consensus        78 ~I~~~l~~-~d~vfi~AGlGGGT--------GtgaapviA~~ake~g~  116 (198)
T d1ofua1          78 RISEVLEG-ADMVFITTGMGGGT--------GTGAAPIIAEVAKEMGI  116 (198)
T ss_dssp             HHHHHHTT-CSEEEEEEETTSSH--------HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCC-CCeEEEEecCCCCc--------cccHHHHHHHHHHHcCC
Confidence            67788888 99999999876531        22345568888999886

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.26  E-value=0.43  Score=34.60  Aligned_cols=34  Identities=6%  Similarity=0.023  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      .++|+|.|| |-.|...+..|++.|.+|+++.+..
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCCcEEEEEeec
Confidence            589999997 9999999999999999999887543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.91  E-value=0.29  Score=34.42  Aligned_cols=30  Identities=20%  Similarity=0.227  Sum_probs=26.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKA   95 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~   95 (252)
                      .+++|+|.|| |.+|..+++.+++.|.++..
T Consensus        28 ~gkrVvVIGg-G~~g~d~a~~~~r~G~~~~~   57 (162)
T d1ps9a2          28 VGNKVAIIGC-GGIGFDTAMYLSQPGESTSQ   57 (162)
T ss_dssp             CCSEEEEECC-HHHHHHHHHHHTCCSSCGGG
T ss_pred             cCCceEEEcC-chhHHHHHHHHHHcCCccce
Confidence            4799999997 99999999999999976543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.86  E-value=1.1  Score=33.59  Aligned_cols=70  Identities=16%  Similarity=0.206  Sum_probs=47.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh---ccccCCCCeEEEEeeCCCChHHHHHHHcCCCcEEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi~  141 (252)
                      +.++||=.|+..  |. ++..|+++|++|++++.++.-.+.   .......+++++.+|+.+ ..     +.+++|.|+.
T Consensus        41 ~~~~iLDiGcGt--G~-~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~-l~-----~~~~fD~I~~  111 (251)
T d1wzna1          41 EVRRVLDLACGT--GI-PTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-----FKNEFDAVTM  111 (251)
T ss_dssp             CCCEEEEETCTT--CH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-----CCSCEEEEEE
T ss_pred             CCCEEEEeCCCC--Cc-cchhhcccceEEEEEeeccccccccccccccccccchheehhhhh-cc-----cccccchHhh
Confidence            457899999754  33 455688899999999998755432   222234579999999877 22     2234898876


Q ss_pred             cC
Q 025456          142 AT  143 (252)
Q Consensus       142 ~a  143 (252)
                      ..
T Consensus       112 ~~  113 (251)
T d1wzna1         112 FF  113 (251)
T ss_dssp             CS
T ss_pred             hh
Confidence            53

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.56  E-value=0.48  Score=37.25  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=29.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      --|+|.|| |..|...+.+++++|.+|+++.+.+
T Consensus        20 ~DVvVIGa-G~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGA-GSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            45899996 9999999999999999999998754

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.44  E-value=0.56  Score=34.70  Aligned_cols=33  Identities=15%  Similarity=0.188  Sum_probs=27.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCC--eEEEeecC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRD   99 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~   99 (252)
                      ...++|.|| |++|..++..|.++|.  +|+++.+.
T Consensus         4 ~~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           4 HVPFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            467889987 9999999999988775  58877764

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.18  E-value=3.5  Score=32.59  Aligned_cols=79  Identities=13%  Similarity=0.028  Sum_probs=50.5

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhc-cccCCCCeEEEEeeCCCC--hHHHHHHHcCCCcEE
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-LSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAV  139 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~i~~Dl~d~--~~~~~~~~~~~~d~v  139 (252)
                      .+++.+|+=.+- ..-|-...+.|++.|.+|+=+-+.. ..+.. .....-+=+-+..|+.++  .+.+.+.+.. .|+|
T Consensus         3 PL~girVld~~~-~~agp~~~~~lad~GA~VikvE~p~-~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~-aDv~   79 (359)
T d1x74a1           3 PLSGLRVVELAG-IGPGPHAAMILGDLGADVVRIDRPS-SVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAK-ADVL   79 (359)
T ss_dssp             TTTTCEEEEECC-STHHHHHHHHHHHTTCEEEEEECC------CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTT-CSEE
T ss_pred             CCCCCEEEEcCC-chHHHHHHHHHHHhCCEEEEECCCC-CCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhh-CCEE
Confidence            345777776663 5667788888899999999775432 11110 111123446788999873  2456677787 9999


Q ss_pred             EEcCC
Q 025456          140 VCATG  144 (252)
Q Consensus       140 i~~ag  144 (252)
                      |+|--
T Consensus        80 i~n~~   84 (359)
T d1x74a1          80 IEGYR   84 (359)
T ss_dssp             EECSC
T ss_pred             EecCC
Confidence            99864

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=83.05  E-value=1.4  Score=32.34  Aligned_cols=77  Identities=17%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhh---cccc-------CCCCeEEEEeeCCCChHHHHHHHcC-
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLSK-------DNPSLQIVKADVTEGSAKLSEAIGD-  134 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~-------~~~~~~~i~~Dl~d~~~~~~~~~~~-  134 (252)
                      .|+|+++| ++-.+..+.+.|++.|++|.++.-.+++...   ....       ...++.+...+..+ .+...+.+.. 
T Consensus         3 ~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   80 (206)
T d1fmta2           3 SLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLR-PQENQQLVAEL   80 (206)
T ss_dssp             CCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSC-SHHHHHHHHHT
T ss_pred             CcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCcccccccccc-chhhHHHHhhh
Confidence            46788887 4788999999999999998776544322110   0000       11234444444444 3444455543 


Q ss_pred             CCcEEEEcCC
Q 025456          135 DSEAVVCATG  144 (252)
Q Consensus       135 ~~d~vi~~ag  144 (252)
                      ++|++|.+..
T Consensus        81 ~~d~~v~~~~   90 (206)
T d1fmta2          81 QADVMVVVAY   90 (206)
T ss_dssp             TCSEEEEESC
T ss_pred             cceEEEeecc
Confidence            4787766543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=82.73  E-value=1.2  Score=35.21  Aligned_cols=76  Identities=12%  Similarity=0.109  Sum_probs=47.0

Q ss_pred             CCCcEEE-EEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---c-cCCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           64 VKQKKIF-VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---S-KDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        64 ~~~~~vl-VtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~-~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      .++++|| +.-|+|+.+.+++    ..+.+|+.++.++...+...   . ..-.+++++.+|..+..+.+.+. .+++|.
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a----~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~-~~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLA----LGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKE-GERFDL  218 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHH----HHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHT-TCCEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHH----hcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhh-hcCCCE
Confidence            4678888 5556677665543    34678999999987654321   1 12357899999876511212221 225999


Q ss_pred             EEEcCC
Q 025456          139 VVCATG  144 (252)
Q Consensus       139 vi~~ag  144 (252)
                      ||....
T Consensus       219 Vi~DpP  224 (318)
T d1wxxa2         219 VVLDPP  224 (318)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            998764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=82.65  E-value=0.72  Score=32.68  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=28.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      -|+|.|| |..|...+..+.+.|.+|.++.++.
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCCeEEEEEEec
Confidence            3789997 9999999999999999999998653

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.61  E-value=1.2  Score=33.17  Aligned_cols=75  Identities=11%  Similarity=0.171  Sum_probs=47.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhh---hccc-cCCCCeEEEEeeCCCChHHHHHHHcCCCcEEE
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---TTLS-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~~-~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~vi  140 (252)
                      .+.+||..|+..|--.+++.+|.  |.+|+.+.++++-.+   +.+. ..-.++.++.+|..+. .   .... ++|.|+
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g-~---~~~~-pfD~Ii  150 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG-F---PPKA-PYDVII  150 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC-C---GGGC-CEEEEE
T ss_pred             ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC-C---cccC-cceeEE
Confidence            46788877765555555655565  456999999865432   2222 1346899999998762 1   1112 489888


Q ss_pred             EcCCCC
Q 025456          141 CATGFQ  146 (252)
Q Consensus       141 ~~ag~~  146 (252)
                      -.++..
T Consensus       151 v~~a~~  156 (215)
T d1jg1a_         151 VTAGAP  156 (215)
T ss_dssp             ECSBBS
T ss_pred             eecccc
Confidence            877754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.57  E-value=0.64  Score=34.02  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      =|+|.|| |-.|...+..+++.|.+|+++.+..
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            4789997 9999999999999999999998753

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=82.22  E-value=3.9  Score=32.88  Aligned_cols=81  Identities=7%  Similarity=0.037  Sum_probs=54.2

Q ss_pred             ccCCCcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc-hhhhhccc----cCCCCeEEEEeeCCCC--hHHHHHHHcC
Q 025456           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLS----KDNPSLQIVKADVTEG--SAKLSEAIGD  134 (252)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~-~~~~~~~~----~~~~~~~~i~~Dl~d~--~~~~~~~~~~  134 (252)
                      ..+.|.+|+=.+ ...-|-...+.|++.|.+|+=+-+.. ........    ....+-+.+..|+.++  .+.+.+.+..
T Consensus         7 gPL~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~   85 (402)
T d1xk7a1           7 GPLAGLRVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMET   85 (402)
T ss_dssp             STTTTCEEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhh
Confidence            456788998776 35668888899999999999776432 11111110    0123557889999883  2456677777


Q ss_pred             CCcEEEEcCC
Q 025456          135 DSEAVVCATG  144 (252)
Q Consensus       135 ~~d~vi~~ag  144 (252)
                       .|+||+|--
T Consensus        86 -aDv~i~n~r   94 (402)
T d1xk7a1          86 -TDIFIEASK   94 (402)
T ss_dssp             -CSEEEEECS
T ss_pred             -cCCceeeec
Confidence             999999853

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.15  E-value=4.2  Score=28.20  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=27.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHHCCCeEEEe
Q 025456           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG   96 (252)
Q Consensus        65 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~   96 (252)
                      +|+++.|.+.+|+.|.-++..+.+.|.++--+
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l   33 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLATL   33 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEECCC
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccCCC
Confidence            48899999999999999999999999776533

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.04  E-value=1.1  Score=33.40  Aligned_cols=38  Identities=16%  Similarity=0.095  Sum_probs=30.9

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHHHC--------------------C-CeEEEeecCch
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLLAK--------------------G-FAVKAGVRDLD  101 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~~~--------------------G-~~V~~~~r~~~  101 (252)
                      ...+++|+|.|+ |.++.=+++.|++.                    | .+|+++.|+..
T Consensus        36 ~~~gk~VvVIGg-GNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          36 DLSCDTAVILGQ-GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             CTTSSEEEEESC-SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             cccCceEEEECC-chhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            346899999997 99999999999984                    4 46888887754

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.82  E-value=1.3  Score=32.76  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             cCCCcEEEEEcCCChHHHHHHHHHH--------------------HCCC-eEEEeecCch
Q 025456           63 SVKQKKIFVAGATGSSGKRIVEQLL--------------------AKGF-AVKAGVRDLD  101 (252)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~l~~~L~--------------------~~G~-~V~~~~r~~~  101 (252)
                      .+.+++|+|.|+ |.++.-+++.|+                    +.|. +|+++.|+..
T Consensus        36 ~~~gk~VvVIGg-GNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          36 DLSGARAVVIGN-GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCSSEEEEECC-SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             cccCceEEEECC-CchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            346899999997 999999999888                    4564 6888888754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.69  E-value=0.84  Score=36.06  Aligned_cols=72  Identities=13%  Similarity=0.135  Sum_probs=45.9

Q ss_pred             CCcEEE-EEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhcc---c--c-CCCCeEEEEeeCCCChHHHHHHH--cCC
Q 025456           65 KQKKIF-VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---S--K-DNPSLQIVKADVTEGSAKLSEAI--GDD  135 (252)
Q Consensus        65 ~~~~vl-VtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~--~-~~~~~~~i~~Dl~d~~~~~~~~~--~~~  135 (252)
                      ++++|| ++.+||.++.+.    ++.|.+|+.++.+....+...   .  + ...+++++..|+.+   .+.+..  ..+
T Consensus       132 ~~~rVLdlf~~tG~~sl~a----a~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~---~l~~~~~~~~~  204 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVA----AAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK---FIQREERRGST  204 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHH----HHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH---HHHHHHHHTCC
T ss_pred             CCCeEEEecCCCcHHHHHH----HhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHH---hHHHHhhcCCC
Confidence            466777 667788776654    456889999988876543211   1  1 23468999998855   233322  125


Q ss_pred             CcEEEEcC
Q 025456          136 SEAVVCAT  143 (252)
Q Consensus       136 ~d~vi~~a  143 (252)
                      +|+||..-
T Consensus       205 fD~IilDP  212 (309)
T d2igta1         205 YDIILTDP  212 (309)
T ss_dssp             BSEEEECC
T ss_pred             CCEEEECC
Confidence            99999763

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.60  E-value=1.3  Score=34.62  Aligned_cols=71  Identities=13%  Similarity=0.118  Sum_probs=45.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhh--hc--cccCCCCeEEEEeeCCCChHHHHHHHcCCCcE
Q 025456           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAK--TT--LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (252)
Q Consensus        64 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~--~~--~~~~~~~~~~i~~Dl~d~~~~~~~~~~~~~d~  138 (252)
                      .++++||-.|+..|+   ++-.++++|. +|+++..++....  +.  ..+...+++++.+|+.+ ..    .-.+++|+
T Consensus        34 ~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~-l~----~~~~~~D~  105 (311)
T d2fyta1          34 FKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEE-VH----LPVEKVDV  105 (311)
T ss_dssp             TTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT-SC----CSCSCEEE
T ss_pred             CCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHH-hc----CccccceE
Confidence            358999999875443   4456667785 7999988764321  11  11234679999999877 21    01124899


Q ss_pred             EEEc
Q 025456          139 VVCA  142 (252)
Q Consensus       139 vi~~  142 (252)
                      |+..
T Consensus       106 Ivse  109 (311)
T d2fyta1         106 IISE  109 (311)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=81.11  E-value=0.77  Score=36.03  Aligned_cols=31  Identities=23%  Similarity=0.174  Sum_probs=28.1

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        69 vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      |+|.|| |.-|...+-.++++|.+|+++.+.+
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEecCC
Confidence            899996 9999999999999999999998764

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.95  E-value=1.4  Score=27.89  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=27.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~  100 (252)
                      |+|||.|. |+=-.+|+..|.+.+.+|++.--++
T Consensus         1 MkVLviGs-GgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           1 VRVHILGS-GGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             CEEEEEEC-SHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCeEEEecCCc
Confidence            68999995 8888999999999888988864443

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=80.74  E-value=0.78  Score=36.77  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=27.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        68 ~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      -++|+|+ |.-|.-+|.+|++.|.+|.++-+-
T Consensus         4 D~IIVGs-G~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           4 DYIIVGA-GPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHhhCCCeEEEEEcc
Confidence            3788886 899999999999999999998765

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.68  E-value=0.96  Score=33.30  Aligned_cols=32  Identities=25%  Similarity=0.230  Sum_probs=26.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCCCeEEEeecC
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   99 (252)
                      |+|++.| ++..|..+.+.|++.|++|.++.-.
T Consensus         1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~   32 (203)
T d2bw0a2           1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTV   32 (203)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcC
Confidence            5788887 4788999999999999999876643

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.46  E-value=0.56  Score=34.23  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=25.1

Q ss_pred             cEEEEEcCCChHHH-----HHHHHHHHCCCeEEEee
Q 025456           67 KKIFVAGATGSSGK-----RIVEQLLAKGFAVKAGV   97 (252)
Q Consensus        67 ~~vlVtGatG~iG~-----~l~~~L~~~G~~V~~~~   97 (252)
                      |+++|||-..|+|+     .|++.|.++|++|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            78999996548886     56678888999999875

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=80.17  E-value=4.5  Score=26.38  Aligned_cols=55  Identities=15%  Similarity=0.215  Sum_probs=37.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHHCCCeEEEeecCchhhhhccccCCCCeEEEEeeCC
Q 025456           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT  122 (252)
Q Consensus        66 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~i~~Dl~  122 (252)
                      ||+|||.--.-.+-..+.+.|-+.|++|+....+....-+.+...  ..+++-.|+.
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~--~~dliilD~~   55 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDIT   55 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECS
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhc--cCCEEEEecC
Confidence            689999999889988888888888999876666554433333222  2344555553

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.16  E-value=0.65  Score=34.34  Aligned_cols=33  Identities=24%  Similarity=0.120  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHHCC-------CeEEEeecCc
Q 025456           67 KKIFVAGATGSSGKRIVEQLLAKG-------FAVKAGVRDL  100 (252)
Q Consensus        67 ~~vlVtGatG~iG~~l~~~L~~~G-------~~V~~~~r~~  100 (252)
                      .+|+|.|| |--|...+.+|+++|       ++|.+..+.+
T Consensus         3 ~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            58999996 999999999999988       4799988764

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.15  E-value=0.99  Score=31.38  Aligned_cols=71  Identities=8%  Similarity=0.202  Sum_probs=44.8

Q ss_pred             CCCcEEE-EEcCCChHHHHHHHHHHHCCC-eEEEeecCchhhhh---ccc--cCCCCeEEEEeeCCCChHHHHHHHcCCC
Q 025456           64 VKQKKIF-VAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT---TLS--KDNPSLQIVKADVTEGSAKLSEAIGDDS  136 (252)
Q Consensus        64 ~~~~~vl-VtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~---~~~--~~~~~~~~i~~Dl~d~~~~~~~~~~~~~  136 (252)
                      .++++|| +..|||.+|.+    ++.+|. +|+.+..+++..+.   ...  +...+++++++|..+   .+. ...+++
T Consensus        13 ~~g~~vlDl~~GtG~~~ie----a~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~---~l~-~~~~~f   84 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIE----AVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER---AID-CLTGRF   84 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHH----HHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH---HHH-HBCSCE
T ss_pred             CCCCeEEEcCCccCHHHHH----HHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc---ccc-cccccc
Confidence            3577877 66678878764    345674 79999888765432   111  123568999988644   233 233359


Q ss_pred             cEEEEc
Q 025456          137 EAVVCA  142 (252)
Q Consensus       137 d~vi~~  142 (252)
                      |+||..
T Consensus        85 DiIf~D   90 (152)
T d2esra1          85 DLVFLD   90 (152)
T ss_dssp             EEEEEC
T ss_pred             ceeEec
Confidence            999865