Citrus Sinensis ID: 025502

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVGGAPSQRSFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS
Secondary Structure (PSIPRED)
cccccccccccEEccccccccccccccccccccccccccccccccEEEEEEEEcccccEEccccccEEEEEEcccEEEcccEEEEccccccccccEEEEEEcccEEccccEEEEEEccccEEEEEcccccEEEEccEEEEEEEcccEEEEEEccccccccccccEEEEEEEccccccccEEEEcccccccccEEEEEEEccccccccccEEEcccccccEEEEccccccEEEcccccEEEEEEccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEccccHEHccccccccccccccccccccccccccccccccEEEEEEEEccccccEEcccccEEEEEEEccHccccccEEEcccccccccccEEEEEccccccccccEEEEEEcccEEEEEEccccEEEEcccEEEEEEcccEEEEEEcccHHcccccccEEEEEEEccHccccccEEEcccccccccccEEEEEccccccccccEEEcEEccccEEEEEEcccccEccccccEEEEEEHHHHEEEEc
Coil and Loop (DISEMBL)
MATAQLTASsikvparsltsfdglrpssvkfasvggapsqrSFRRLVVKAAAVvapkytsikplgdRVLVKIKTveektdggiflpsaaqtkpqagevvavgegktvgkakldisvkpgtqVIYSKyagtelefnganhlilreddvvgiletdeikdlkplndRVFIKVAEAEETTAGGLLlteaskekpsigmviavgpgpldeegnrkplsiapgntvmyskyagndfkgsdgtnYIALRASEVMAVLS
Flexible Loop (DISEMBL)
mataqltassikvparsltsfdglrpSSVKFAsvggapsqrsfRRLVVKAAAvvapkytsikplgdrvlVKIKTVeektdggiflpsaaqtkpqageVVAVGegktvgkakldisvkpgtQVIYSKYAGTELEFNGANHLILREDDVVGILEtdeikdlkplndRVFIKVAEaeettagglllteaskekpsigMVIAVGpgpldeegnrKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS
Low Complexity Region (SEG)
MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVGGAPSQRSFRRLvvkaaavvaPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS
Disordered region (IsUnstruct)
*****************************************SFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPS********GEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLT********IGMVIAV*******************NTVMYSKYAGNDFKGSDGTNYIALRA********
Disordered Region (DISOPRED)
*************PARSLTSFD******************************VVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS
Disordered Region (DISEMBL)
**********IKVPARSLTSFDGLRPSSVKFASVGGAPSQRSFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS
Disordered Region (DISPRO)
********SSIKVPARSLTSFDGLRPSSVKFASV****SQRSFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVGGAPSQRSFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
O65282	253	20 kDa chaperonin, chloro	yes	no	1.0	0.996	0.754	1e-105
Q02073	255	20 kDa chaperonin, chloro	N/A	no	0.996	0.984	0.617	2e-87
B2A5V2	95	10 kDa chaperonin OS=Natr	yes	no	0.369	0.978	0.521	8e-22
B0K3P5	94	10 kDa chaperonin OS=Ther	yes	no	0.357	0.957	0.532	1e-21
B0KBR4	94	10 kDa chaperonin OS=Ther	yes	no	0.357	0.957	0.532	1e-21
Q60023	94	10 kDa chaperonin OS=Ther	yes	no	0.357	0.957	0.532	1e-21
P0A348	103	10 kDa chaperonin OS=Ther	N/A	no	0.376	0.922	0.479	4e-21
P0A347	103	10 kDa chaperonin OS=Ther	yes	no	0.376	0.922	0.479	4e-21
A1VCP9	95	10 kDa chaperonin OS=Desu	yes	no	0.369	0.978	0.521	7e-21
Q72AL5	95	10 kDa chaperonin OS=Desu	yes	no	0.369	0.978	0.521	7e-21

>sp|O65282|CH10C_ARATH 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/253 (75%), Positives = 215/253 (84%), Gaps = 1/253 (0%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLVVKAAAVVAPKYT 59
           MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRLVVKAA+VVAPKYT
Sbjct: 1   MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYT 60

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPG 119
           SIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G
Sbjct: 61  SIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTG 120

Query: 120 TQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAG 179
            Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAG
Sbjct: 121 AQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAG 180

Query: 180 GLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNY 239
           GLLLTE +KEKPSIG VIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NY
Sbjct: 181 GLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNY 240

Query: 240 IALRASEVMAVLS 252
           IALRAS+VMA+LS
Sbjct: 241 IALRASDVMAILS 253

Seems to function only as a co-chaperone, along with cpn60, and in certain cases is essential for the discharge of biologically active proteins from cpn60.
Arabidopsis thaliana (taxid: 3702)

>sp|Q02073|CH10C_SPIOL 20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1

 Score =  322 bits (825), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/256 (61%), Positives = 200/256 (78%), Gaps = 5/256 (1%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAPSQRSFRRLVVKAAAVVAP 56
           MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR LVV+AA++   
Sbjct: 1   MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTS 59

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYTS+KPLGDRVL+K K VEEKT  GIFLP+AAQ KPQ+GEVVA+G GK VG  KL ++V
Sbjct: 60  KYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAV 119

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           K G +V+YSKY GTE+E +G++HLI++EDD++GILETD++KDLKPLNDR+ IKVAE E  
Sbjct: 120 KTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENK 179

Query: 177 TAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 236
           T+GGLLL E+SKEKPS G V+A GPG LDEEGNR PL +  GNTV+YSKYAGNDFKG DG
Sbjct: 180 TSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDG 239

Query: 237 TNYIALRASEVMAVLS 252
           ++Y+ LR S+VMAVLS
Sbjct: 240 SDYMVLRVSDVMAVLS 255

Seems to function only as a co-chaperone, along with cpn60, and in certain cases is essential for the discharge of biologically active proteins from cpn60.

Spinacia oleracea (taxid: 3562)

>sp|B2A5V2|CH10_NATTJ 10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1

 Score =  104 bits (259), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKP 118
           ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK 
Sbjct: 2   NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKA 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct: 62  GDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

>sp|B0K3P5|CH10_THEPX 10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 69/92 (75%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G 
Sbjct: 3   LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGD 62

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct: 63  RVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Thermoanaerobacter sp. (strain X514) (taxid: 399726)

>sp|B0KBR4|CH10_THEP3 10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 69/92 (75%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G 
Sbjct: 3   LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGD 62

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct: 63  RVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099)

>sp|Q60023|CH10_THEBR 10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 69/92 (75%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G 
Sbjct: 3   LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGD 62

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct: 63  RVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Thermoanaerobacter brockii (taxid: 29323)

>sp|P0A348|CH10_THEVL 10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 71/96 (73%), Gaps = 1/96 (1%)

Query: 156 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSI 215
           +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +
Sbjct: 8   VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDV 67

Query: 216 APGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
             G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct: 68  KVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Thermosynechococcus vulcanus (taxid: 32053)

>sp|P0A347|CH10_THEEB 10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 71/96 (73%), Gaps = 1/96 (1%)

Query: 156 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSI 215
           +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +
Sbjct: 8   VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDV 67

Query: 216 APGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
             G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct: 68  KVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|A1VCP9|CH10_DESVV 10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1

 Score =  100 bits (250), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK 
Sbjct: 2   NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKA 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct: 62  GDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Desulfovibrio vulgaris subsp. vulgaris (strain DP4) (taxid: 391774)

>sp|Q72AL5|CH10_DESVH 10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1

 Score =  100 bits (250), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK 
Sbjct: 2   NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKA 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct: 62  GDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) (taxid: 882)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
255550363	253	groes chaperonin, putative [Ricinus comm	1.0	0.996	0.818	1e-117
224068518	256	predicted protein [Populus trichocarpa]	1.0	0.984	0.804	1e-113
118489858	256	unknown [Populus trichocarpa x Populus d	1.0	0.984	0.800	1e-113
224141565	258	predicted protein [Populus trichocarpa]	1.0	0.976	0.806	1e-113
21780187	256	cp10-like protein [Gossypium hirsutum]	1.0	0.984	0.781	1e-110
225444649	251	PREDICTED: 20 kDa chaperonin, chloroplas	0.972	0.976	0.764	1e-107
356556406	253	PREDICTED: 20 kDa chaperonin, chloroplas	0.980	0.976	0.759	1e-105
15242045	253	chaperonin 20 [Arabidopsis thaliana] gi|	1.0	0.996	0.754	1e-103
388511263	254	unknown [Medicago truncatula]	0.992	0.984	0.722	1e-102
388494688	254	unknown [Medicago truncatula]	0.992	0.984	0.722	1e-102

>gi|255550363|ref|XP_002516232.1| groes chaperonin, putative [Ricinus communis] gi|223544718|gb|EEF46234.1| groes chaperonin, putative [Ricinus communis]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/253 (81%), Positives = 235/253 (92%), Gaps = 1/253 (0%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASV-GGAPSQRSFRRLVVKAAAVVAPKYT 59
           MATAQLTASS+ + AR+LTSF+GLRPS+VKFAS+  G  SQRSFR LVVKAA VVAPKYT
Sbjct: 1   MATAQLTASSVSLSARNLTSFEGLRPSTVKFASLKAGGLSQRSFRSLVVKAATVVAPKYT 60

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPG 119
           SIKPLGDRVL+KIK  EEKTDGGI LP++AQTKPQ GEVVAVGEG+T+GK KLDISVK G
Sbjct: 61  SIKPLGDRVLLKIKVAEEKTDGGILLPTSAQTKPQGGEVVAVGEGRTIGKNKLDISVKTG 120

Query: 120 TQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAG 179
            QV+YSKYAGTE+EFNG++HLIL+EDD+VG+LETD+IKDLKPLNDRVFIK+A+AEE TAG
Sbjct: 121 AQVVYSKYAGTEVEFNGSSHLILKEDDIVGVLETDDIKDLKPLNDRVFIKIADAEEKTAG 180

Query: 180 GLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNY 239
           GLLLTEA+KEKPSIG VIAVGPG LDEEGNR+PLS++PGN+V+YSKYAGNDFKGSDGTNY
Sbjct: 181 GLLLTEATKEKPSIGTVIAVGPGTLDEEGNRRPLSVSPGNSVLYSKYAGNDFKGSDGTNY 240

Query: 240 IALRASEVMAVLS 252
           IALRAS+VMAVLS
Sbjct: 241 IALRASDVMAVLS 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068518|ref|XP_002326137.1| predicted protein [Populus trichocarpa] gi|118488687|gb|ABK96154.1| unknown [Populus trichocarpa] gi|222833330|gb|EEE71807.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/256 (80%), Positives = 234/256 (91%), Gaps = 4/256 (1%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASV----GGAPSQRSFRRLVVKAAAVVAP 56
           MATAQLTASSI V AR+L+SF+GLR S+VKFAS     G A SQR FR LVVKAA VVAP
Sbjct: 1   MATAQLTASSISVSARNLSSFEGLRASNVKFASFKPAGGFALSQRPFRCLVVKAATVVAP 60

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYTSIKPLGDRVLVKIKTVEEK++GGI LPS+AQTKPQAGEVVAVGEGK++GK KLDISV
Sbjct: 61  KYTSIKPLGDRVLVKIKTVEEKSEGGILLPSSAQTKPQAGEVVAVGEGKSIGKTKLDISV 120

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           K G +V+YSKYAGTE+EF+G++HLIL+EDD++GILETD+IKDLKPLNDRVFIK+AEAEE 
Sbjct: 121 KTGARVVYSKYAGTEVEFDGSSHLILKEDDIIGILETDDIKDLKPLNDRVFIKLAEAEEK 180

Query: 177 TAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 236
           TAGGLLLTEA+KEKPSIG VIAVGPGPLDEEGNRK L ++PG+TV+YSKYAGNDFKGSDG
Sbjct: 181 TAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKALPVSPGSTVLYSKYAGNDFKGSDG 240

Query: 237 TNYIALRASEVMAVLS 252
            NYIAL+AS+VMA+LS
Sbjct: 241 ANYIALKASDVMAILS 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489858|gb|ABK96728.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/256 (80%), Positives = 233/256 (91%), Gaps = 4/256 (1%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASV----GGAPSQRSFRRLVVKAAAVVAP 56
           MATAQLTASSI V AR+L+S +GLR S+VKFAS     G A SQR FR LVVKAA VVAP
Sbjct: 1   MATAQLTASSISVSARNLSSLEGLRASNVKFASFKPAGGFALSQRPFRCLVVKAATVVAP 60

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYTSIKPLGDRVLVKIKTVEEK++GGI LPS+AQTKPQAGEVVAVGEGK+ GK KLDISV
Sbjct: 61  KYTSIKPLGDRVLVKIKTVEEKSEGGILLPSSAQTKPQAGEVVAVGEGKSTGKTKLDISV 120

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           K G +V+YSKYAGTE+EF+G++HLIL+EDD++GILETD+I+DLKPLNDRVFIK+AEAEE 
Sbjct: 121 KTGARVVYSKYAGTEVEFDGSSHLILKEDDIIGILETDDIRDLKPLNDRVFIKIAEAEEK 180

Query: 177 TAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 236
           TAGGLLLTEA+KEKPSIG VIAVGPGPLDEEGNRK LS++PG+TV+YSKYAGNDFKGSDG
Sbjct: 181 TAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKALSVSPGSTVLYSKYAGNDFKGSDG 240

Query: 237 TNYIALRASEVMAVLS 252
            NYIAL+AS+VMA+LS
Sbjct: 241 ANYIALKASDVMAILS 256

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141565|ref|XP_002324138.1| predicted protein [Populus trichocarpa] gi|222865572|gb|EEF02703.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/258 (80%), Positives = 233/258 (90%), Gaps = 6/258 (2%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFAS------VGGAPSQRSFRRLVVKAAAVV 54
           MATAQLTA SI V AR+L+SF+GLR S+VKFAS      VG   S+RSF+ LVVKAA VV
Sbjct: 1   MATAQLTAFSISVSARNLSSFEGLRASNVKFASFKPLVGVGLPLSRRSFQGLVVKAATVV 60

Query: 55  APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI 114
           APKYTSI PLGDRVLVKIKTVEEKT+ GI LPS+AQ+KPQ GEVVAVGEGKT+GKAKLDI
Sbjct: 61  APKYTSITPLGDRVLVKIKTVEEKTESGILLPSSAQSKPQGGEVVAVGEGKTIGKAKLDI 120

Query: 115 SVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAE 174
           SVK GTQV+YSKYAGTE+EF+G++HLIL+EDD+VGILETD+IKDLKPLNDRVFIKVAEAE
Sbjct: 121 SVKTGTQVVYSKYAGTEVEFDGSSHLILKEDDIVGILETDDIKDLKPLNDRVFIKVAEAE 180

Query: 175 ETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGS 234
           E TAGGLLLTEA+KEKPSIG VIA+GPGPLDEEGNRK LS++PGNTV+YSKYAGNDFKGS
Sbjct: 181 EKTAGGLLLTEATKEKPSIGTVIAIGPGPLDEEGNRKALSVSPGNTVLYSKYAGNDFKGS 240

Query: 235 DGTNYIALRASEVMAVLS 252
           DG  YIALRAS+VMA+LS
Sbjct: 241 DGAIYIALRASDVMAILS 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21780187|gb|AAM77651.1|AF522274_1 cp10-like protein [Gossypium hirsutum]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/256 (78%), Positives = 225/256 (87%), Gaps = 4/256 (1%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG----GAPSQRSFRRLVVKAAAVVAP 56
           MAT+QLTASS+   AR+L S  GLR S+VKF+S G    GA + RSFR LVVKAA VVAP
Sbjct: 1   MATSQLTASSVTASARNLASLQGLRLSTVKFSSFGTLKPGAVTSRSFRGLVVKAATVVAP 60

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYTS+KPLGDRVLVKIK  EEKT+GGI LP+ AQ+KPQ GEVVAVGEGKT+G  K + SV
Sbjct: 61  KYTSVKPLGDRVLVKIKETEEKTEGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKSESSV 120

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           K G QVIYSKYAGTE+EFNGANHL+L+EDD+VG+LETD+IKDLKPLNDRVFIKV+EAEE 
Sbjct: 121 KTGAQVIYSKYAGTEVEFNGANHLLLKEDDIVGLLETDDIKDLKPLNDRVFIKVSEAEEK 180

Query: 177 TAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 236
           TAGGLLLTEASKEKPSIG VIAVGPG LDEEGN KPLS++PGNTV+YSKYAGNDFKG+DG
Sbjct: 181 TAGGLLLTEASKEKPSIGTVIAVGPGTLDEEGNLKPLSVSPGNTVLYSKYAGNDFKGNDG 240

Query: 237 TNYIALRASEVMAVLS 252
           +NYIALRAS+VMAVLS
Sbjct: 241 SNYIALRASDVMAVLS 256

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444649|ref|XP_002276749.1| PREDICTED: 20 kDa chaperonin, chloroplastic [Vitis vinifera] gi|50660327|gb|AAT80888.1| chloroplast chaperonin 21 [Vitis vinifera] gi|297738526|emb|CBI27771.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/250 (76%), Positives = 221/250 (88%), Gaps = 5/250 (2%)

Query: 8   ASSIKVPARSLTSFDGLRPSSVKFASVG-----GAPSQRSFRRLVVKAAAVVAPKYTSIK 62
           A++  +  RSL SF+GLRPS+V+ +S+G     G  +QRSFR LVV+AA VV PKYTS+K
Sbjct: 2   ATAPTISTRSLPSFEGLRPSTVRISSMGLPLKAGGLTQRSFRSLVVRAATVVTPKYTSLK 61

Query: 63  PLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQV 122
           PLGDRVLVKIKT EEKT GGI LP+ AQTKPQ GEVVAVGEGKT+GK KLDI VK G QV
Sbjct: 62  PLGDRVLVKIKTAEEKTVGGILLPTTAQTKPQGGEVVAVGEGKTIGKNKLDICVKTGAQV 121

Query: 123 IYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLL 182
           +YSKYAGTE+EFNG+NHLIL+EDD+VGILETD++KDLKPLNDRV IKVAEAEE TAGGLL
Sbjct: 122 VYSKYAGTEVEFNGSNHLILKEDDIVGILETDDVKDLKPLNDRVLIKVAEAEEKTAGGLL 181

Query: 183 LTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAL 242
           LTEASKEKPSIG V+AVGPGPLDE+G RKPLS++PGNTV+YSKYAGNDFKGSDG++YIAL
Sbjct: 182 LTEASKEKPSIGTVVAVGPGPLDEDGKRKPLSVSPGNTVLYSKYAGNDFKGSDGSDYIAL 241

Query: 243 RASEVMAVLS 252
           +AS++MAVLS
Sbjct: 242 KASDIMAVLS 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556406|ref|XP_003546517.1| PREDICTED: 20 kDa chaperonin, chloroplastic-like [Glycine max] gi|255647873|gb|ACU24395.1| unknown [Glycine max]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/258 (75%), Positives = 221/258 (85%), Gaps = 11/258 (4%)

Query: 1   MATAQLTA--SSIKVPARSLTSFDGLRPSSVKFASVG----GAPSQRSFRRLVVKAAAVV 54
           MA+AQLTA  SSI     S  SF+GLRPS+V+FAS G    G  SQRSFR LVVKAA VV
Sbjct: 1   MASAQLTAIASSI-----STASFEGLRPSAVQFASTGRIRIGNLSQRSFRGLVVKAATVV 55

Query: 55  APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI 114
           APKYT+IKPLGDRVL+KIK  EEKT+GGI LPS AQTKPQ GEVVAVGEGKTVGK  ++I
Sbjct: 56  APKYTAIKPLGDRVLIKIKEAEEKTEGGILLPSTAQTKPQGGEVVAVGEGKTVGKNNVEI 115

Query: 115 SVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAE 174
           SVK G QV+YSKYAGTE++FNG  HLI+++DD+VGILETD+IKDLKPLNDRV IKVAEAE
Sbjct: 116 SVKTGAQVVYSKYAGTEVDFNGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAE 175

Query: 175 ETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGS 234
           E T+GGLLLTEA+K+KPSIG VIAVGPG LDEEGNRKPLS+ PGNTV+YSKYAGNDFKG 
Sbjct: 176 EKTSGGLLLTEATKDKPSIGTVIAVGPGHLDEEGNRKPLSVTPGNTVLYSKYAGNDFKGK 235

Query: 235 DGTNYIALRASEVMAVLS 252
           DG++YI LR S+VMAVLS
Sbjct: 236 DGSDYITLRVSDVMAVLS 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242045|ref|NP_197572.1| chaperonin 20 [Arabidopsis thaliana] gi|30687936|ref|NP_851045.1| chaperonin 20 [Arabidopsis thaliana] gi|334187803|ref|NP_001190350.1| chaperonin 20 [Arabidopsis thaliana] gi|297808145|ref|XP_002871956.1| hypothetical protein ARALYDRAFT_488978 [Arabidopsis lyrata subsp. lyrata] gi|12643263|sp|O65282.2|CH10C_ARATH RecName: Full=20 kDa chaperonin, chloroplastic; AltName: Full=Chaperonin 10; Short=Ch-CPN10; Short=Cpn10; AltName: Full=Chaperonin 20; AltName: Full=Protein Cpn21; Flags: Precursor gi|10179872|gb|AAG13931.1|AF268068_1 chaperonin 10 [Arabidopsis thaliana] gi|16226815|gb|AAL16269.1|AF428339_1 AT5g20720/T1M15_120 [Arabidopsis thaliana] gi|16226911|gb|AAL16296.1|AF428366_1 AT5g20720/T1M15_120 [Arabidopsis thaliana] gi|4127456|emb|CAA09368.1| Cpn21 protein [Arabidopsis thaliana] gi|14334612|gb|AAK59484.1| putative chloroplast Cpn21 protein [Arabidopsis thaliana] gi|14587373|dbj|BAB61619.1| chaperonin 20 [Arabidopsis thaliana] gi|17065646|gb|AAL33817.1| putative chloroplast Cpn21 protein [Arabidopsis thaliana] gi|297317793|gb|EFH48215.1| hypothetical protein ARALYDRAFT_488978 [Arabidopsis lyrata subsp. lyrata] gi|332005498|gb|AED92881.1| chaperonin 20 [Arabidopsis thaliana] gi|332005499|gb|AED92882.1| chaperonin 20 [Arabidopsis thaliana] gi|332005500|gb|AED92883.1| chaperonin 20 [Arabidopsis thaliana]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/253 (75%), Positives = 215/253 (84%), Gaps = 1/253 (0%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLVVKAAAVVAPKYT 59
           MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRLVVKAA+VVAPKYT
Sbjct: 1   MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYT 60

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPG 119
           SIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G
Sbjct: 61  SIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTG 120

Query: 120 TQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAG 179
            Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAG
Sbjct: 121 AQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAG 180

Query: 180 GLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNY 239
           GLLLTE +KEKPSIG VIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NY
Sbjct: 181 GLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNY 240

Query: 240 IALRASEVMAVLS 252
           IALRAS+VMA+LS
Sbjct: 241 IALRASDVMAILS 253

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511263|gb|AFK43693.1| unknown [Medicago truncatula]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/256 (72%), Positives = 219/256 (85%), Gaps = 6/256 (2%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG----GAPSQRSFRRLVVKAAAVVAP 56
           MA++QLTASSI    RS+ SF+GLRPSSV+F S      G P++RSF+ L+VKAA VVAP
Sbjct: 1   MASSQLTASSIST--RSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAP 58

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYT+IKPLGDRVLVKIK  EEKT  GI LPS+AQTKPQ GEVVAVGEGKT+GK +++ISV
Sbjct: 59  KYTAIKPLGDRVLVKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISV 118

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           KPG QV+YSKYAGTE++FNG  HL+L++DD+VGILETD+IKDLKPLNDRV IK+ +AEE 
Sbjct: 119 KPGAQVVYSKYAGTEVDFNGEKHLVLKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEK 178

Query: 177 TAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 236
           T+GGL LTEA+KEKPS G V+AVGPG +DEEGNRKPL++A GNTV+YSKYAGNDFKG DG
Sbjct: 179 TSGGLYLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVASGNTVLYSKYAGNDFKGKDG 238

Query: 237 TNYIALRASEVMAVLS 252
             YI LR+S+VMAVLS
Sbjct: 239 FEYITLRSSDVMAVLS 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494688|gb|AFK35410.1| unknown [Medicago truncatula]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/256 (72%), Positives = 219/256 (85%), Gaps = 6/256 (2%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG----GAPSQRSFRRLVVKAAAVVAP 56
           MA++QLTASSI    RS+ SF+GLRPSSV+F S      G P++RSF+ L+VKAA VVAP
Sbjct: 1   MASSQLTASSIST--RSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAP 58

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYT+IKPLGDRVLVKIK  EEKT  GI LPS+AQTKPQ GEVVAVGEGKT+GK +++ISV
Sbjct: 59  KYTAIKPLGDRVLVKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISV 118

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           KPG QV+YSKYAGTE++FNG  HLIL++DD+VGILETD+IKDLKPLNDRV IK+ +AEE 
Sbjct: 119 KPGAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEK 178

Query: 177 TAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 236
           T+GGL LTEA+KEKPS G V+AVGPG +DEEGNRKPL++A GNTV+YSKYAGNDFKG DG
Sbjct: 179 TSGGLYLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVASGNTVLYSKYAGNDFKGKDG 238

Query: 237 TNYIALRASEVMAVLS 252
             Y+ LR+S+VMAVLS
Sbjct: 239 FEYVTLRSSDVMAVLS 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2180454	253	CPN20 "chaperonin 20" [Arabido	1.0	0.996	0.723	1.3e-91
UNIPROTKB|P09621	100	groS "10 kDa chaperonin" [Myco	0.373	0.94	0.479	1.7e-20
TIGR_CMR|GSU_3339	95	GSU_3339 "chaperonin, 10 kDa"	0.369	0.978	0.478	2.1e-20
TIGR_CMR|BA_0266	94	BA_0266 "chaperonin, 10 kDa" [	0.365	0.978	0.494	1.5e-19
TIGR_CMR|CHY_0806	94	CHY_0806 "chaperonin, 10 kDa"	0.361	0.968	0.521	2.5e-19
TIGR_CMR|CBU_1719	96	CBU_1719 "chaperonin, 10 kDa"	0.361	0.947	0.436	5.8e-18
TIGR_CMR|SPO_0886	95	SPO_0886 "chaperonin, 10 kDa"	0.369	0.978	0.436	1.4e-16
GENEDB_PFALCIPARUM|PF13_0180	258	PF13_0180 "chaperonin, putativ	0.75	0.732	0.25	3.7e-16
UNIPROTKB|Q8IDZ8	258	PfCpn20 "Cochaperonin" [Plasmo	0.75	0.732	0.25	3.7e-16
TIGR_CMR|CPS_0956	96	CPS_0956 "chaperone protein Gr	0.369	0.968	0.452	3e-14

TAIR|locus:2180454 CPN20 "chaperonin 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 183/253 (72%), Positives = 206/253 (81%)

Query:     1 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLXXXXXXXXXPKYT 59
             MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYT
Sbjct:     1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYT 60

Query:    60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPG 119
             SIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G
Sbjct:    61 SIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTG 120

Query:   120 TQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAG 179
              Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAG
Sbjct:   121 AQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAG 180

Query:   180 GLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNY 239
             GLLLTE +KEKPSIG VIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NY
Sbjct:   181 GLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNY 240

Query:   240 IALRASEVMAVLS 252
             IALRAS+VMA+LS
Sbjct:   241 IALRASDVMAILS 253

GO:0005737 "cytoplasm" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0005516 "calmodulin binding" evidence=TAS

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0009536 "plastid" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:1901671 "positive regulation of superoxide dismutase activity" evidence=IDA

UNIPROTKB|P09621 groS "10 kDa chaperonin" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 46/96 (47%), Positives = 69/96 (71%)

Query:   158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIA 216
             ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A
Sbjct:     5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 64

Query:   217 PGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
              G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    65 EGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

GO:0005576 "extracellular region" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009408 "response to heat" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0046677 "response to antibiotic" evidence=IEP

GO:0046872 "metal ion binding" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

TIGR_CMR|GSU_3339 GSU_3339 "chaperonin, 10 kDa" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 45/94 (47%), Positives = 66/94 (70%)

Query:    60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKP 118
             +++PL DR+LVK    E KT GGIF+P  A+ KPQ GE+VAVG GK     K + + +K 
Sbjct:     2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKV 61

Query:   119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             G +V++ KYAGT+++  G   LI+REDD++G++E
Sbjct:    62 GDKVLFGKYAGTDIKIEGQEFLIMREDDILGVIE 95

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

TIGR_CMR|BA_0266 BA_0266 "chaperonin, 10 kDa" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 46/93 (49%), Positives = 67/93 (72%)

Query:   159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
             LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G
Sbjct:     2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAG 61

Query:   219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
             + +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    62 DLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

TIGR_CMR|CHY_0806 CHY_0806 "chaperonin, 10 kDa" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 48/92 (52%), Positives = 63/92 (68%)

Query:    62 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGT 120
             +PL DRVLVK    EE T  GI +P  A+ KPQ GEV AVG G+ +    ++ + VK G 
Sbjct:     3 RPLHDRVLVKPLPTEEVTKSGIVIPDTAKEKPQQGEVKAVGSGRILENGERVPMEVKVGD 62

Query:   121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             +V YSKYAGTE++ +G  +LILRE D++GILE
Sbjct:    63 RVFYSKYAGTEVKIDGEEYLILRESDILGILE 94

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

TIGR_CMR|CBU_1719 CBU_1719 "chaperonin, 10 kDa" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 41/94 (43%), Positives = 67/94 (71%)

Query:    61 IKPLGDRVLVKIKTVEEKTD-GGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
             I+PL DRV+V+ +  EE+T  GGI +P +A  KP  GEV++VG GK +   ++  + VK 
Sbjct:     3 IRPLHDRVVVR-RLEEERTSAGGIVIPDSAAEKPSRGEVISVGPGKPLDNGEVRSLDVKV 61

Query:   119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             G Q+++ KYAGTE++  G  ++++REDD++G++E
Sbjct:    62 GDQILFGKYAGTEVKLAGDEYIVMREDDIMGVIE 95

GO:0006457 "protein folding" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

TIGR_CMR|SPO_0886 SPO_0886 "chaperonin, 10 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 41/94 (43%), Positives = 64/94 (68%)

Query:    60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
             ++KPL DRVLV+    EEKT GG+ +P +A+ KP  G VVA GEG      +L  ++VK 
Sbjct:     2 ALKPLHDRVLVRRTESEEKTAGGLIIPDSAKEKPSEGVVVACGEGARKDSGELIAMAVKS 61

Query:   119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             G +V++ K++GTE+  +G   L+++E D++GI+E
Sbjct:    62 GDRVLFGKWSGTEVTVDGEELLMMKESDIMGIIE 95

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

GENEDB_PFALCIPARUM|PF13_0180 PF13_0180 "chaperonin, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 49/196 (25%), Positives = 102/196 (52%)

Query:    61 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG--KTVGKAKLDISVKP 118
             + PL + +L++     + TD G+F+    +     G+V++VG G   T    ++ I ++ 
Sbjct:    61 LTPLNEYILIQKDEAGDTTDSGVFIGDTLKKNQYIGKVLSVGAGAINTKNGERIPIDIQV 120

Query:   119 GTQVIYSKYAGTELEFNGANHLILREDDVVG-ILETDEIKDLK--PLNDRVFIKVAEAEE 175
             G  VI++   G ++++N    L++  ++V+G I +++EI  L   PL DRV IK+     
Sbjct:   121 GDVVIFNPNDGNKVKYNDKECLLISNEEVLGKINDSNEINPLNITPLYDRVLIKLINPNV 180

Query:   176 TTAGGLLLTEA-SKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGS 234
              +   +++ E+ + +K + G V+A+G G  DE   + P+ +   + + +S ++    + +
Sbjct:   181 NSDSLIIIPESKNNDKVTDGQVVAIGNGIYDENNQKVPIDLRIDDYIKFSPFSNESCEFT 240

Query:   235 -DGTNYIALRASEVMA 249
                  Y  ++A  VMA
Sbjct:   241 YQNAKYTFVKARYVMA 256

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q8IDZ8 PfCpn20 "Cochaperonin" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 49/196 (25%), Positives = 102/196 (52%)

Query:    61 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG--KTVGKAKLDISVKP 118
             + PL + +L++     + TD G+F+    +     G+V++VG G   T    ++ I ++ 
Sbjct:    61 LTPLNEYILIQKDEAGDTTDSGVFIGDTLKKNQYIGKVLSVGAGAINTKNGERIPIDIQV 120

Query:   119 GTQVIYSKYAGTELEFNGANHLILREDDVVG-ILETDEIKDLK--PLNDRVFIKVAEAEE 175
             G  VI++   G ++++N    L++  ++V+G I +++EI  L   PL DRV IK+     
Sbjct:   121 GDVVIFNPNDGNKVKYNDKECLLISNEEVLGKINDSNEINPLNITPLYDRVLIKLINPNV 180

Query:   176 TTAGGLLLTEA-SKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGS 234
              +   +++ E+ + +K + G V+A+G G  DE   + P+ +   + + +S ++    + +
Sbjct:   181 NSDSLIIIPESKNNDKVTDGQVVAIGNGIYDENNQKVPIDLRIDDYIKFSPFSNESCEFT 240

Query:   235 -DGTNYIALRASEVMA 249
                  Y  ++A  VMA
Sbjct:   241 YQNAKYTFVKARYVMA 256

GO:0020011 "apicoplast" evidence=ISS

TIGR_CMR|CPS_0956 CPS_0956 "chaperone protein GroES" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 43/95 (45%), Positives = 60/95 (63%)

Query:    60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
             SI+PL DRV+VK K VE K+ GGI L  +A  K   GEV+AVG G+ +   ++  + VK 
Sbjct:     2 SIRPLHDRVIVKRKKVESKSAGGIVLTGSAAEKSTRGEVIAVGNGRILENGEVRPLDVKV 61

Query:   119 GTQVIYSKYAGTELE-FNGANHLILREDDVVGILE 152
             G QVI+S+  G + E  +G   LIL E D++ I+E
Sbjct:    62 GDQVIFSEGYGVKTEKIDGEEVLILSESDILAIVE 96

GO:0006457 "protein folding" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65282	CH10C_ARATH	No assigned EC number	0.7549	1.0	0.9960	yes	no
Q02073	CH10C_SPIOL	No assigned EC number	0.6171	0.9960	0.9843	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
PRK00364	95	PRK00364, groES, co-chaperonin GroES; Reviewed	3e-35
smart00883	93	smart00883, Cpn10, Chaperonin 10 Kd subunit	3e-35
PRK00364	95	PRK00364, groES, co-chaperonin GroES; Reviewed	5e-33
smart00883	93	smart00883, Cpn10, Chaperonin 10 Kd subunit	1e-32
cd00320	93	cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or	7e-32
pfam00166	91	pfam00166, Cpn10, Chaperonin 10 Kd subunit	2e-31
cd00320	93	cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or	3e-31
COG0234	96	COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttr	3e-31
COG0234	96	COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttr	1e-30
pfam00166	91	pfam00166, Cpn10, Chaperonin 10 Kd subunit	2e-27
PRK14533	91	PRK14533, groES, co-chaperonin GroES; Provisional	1e-18
PRK14533	91	PRK14533, groES, co-chaperonin GroES; Provisional	2e-10
PTZ00414	100	PTZ00414, PTZ00414, 10 kDa heat shock protein; Pro	2e-07
PTZ00414	100	PTZ00414, PTZ00414, 10 kDa heat shock protein; Pro	0.002

>gnl|CDD|178988 PRK00364, groES, co-chaperonin GroES; Reviewed

 Score =  120 bits (305), Expect = 3e-35
 Identities = 50/94 (53%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           ++KPLGDRVLVK    EEKT GGI LP +A+ KPQ GEVVAVG G+ +   +   + VK 
Sbjct: 2   NLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKV 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G +V++ KYAGTE++ +G  +LILRE D++ I+E
Sbjct: 62  GDKVLFGKYAGTEVKIDGEEYLILRESDILAIVE 95

Length = 95

>gnl|CDD|197951 smart00883, Cpn10, Chaperonin 10 Kd subunit

 Score =  120 bits (305), Expect = 3e-35
 Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
            IKPLGDRVLVK    EEKT GGI +P  A+ KPQ GEVVAVG GK +   +   + VK 
Sbjct: 1   KIKPLGDRVLVKRIEEEEKTAGGIVIPDTAKEKPQEGEVVAVGPGKRLENGERVPLDVKV 60

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           G +V++ KYAGTE++ +G  +LILRE D++ ++
Sbjct: 61  GDKVLFGKYAGTEVKLDGEEYLILRESDILAVI 93

The chaperonins are 'helper' molecules required for correct folding and subsequent assembly of some proteins. These are required for normal cell growth, and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10). The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Length = 93

>gnl|CDD|178988 PRK00364, groES, co-chaperonin GroES; Reviewed

 Score =  115 bits (290), Expect = 5e-33
 Identities = 45/93 (48%), Positives = 64/93 (68%), Gaps = 1/93 (1%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           LKPL DRV +K  E EE TAGG++L +++KEKP  G V+AVGPG   + G R PL +  G
Sbjct: 3   LKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVG 62

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           + V++ KYAG + K  DG  Y+ LR S+++A++
Sbjct: 63  DKVLFGKYAGTEVK-IDGEEYLILRESDILAIV 94

Length = 95

>gnl|CDD|197951 smart00883, Cpn10, Chaperonin 10 Kd subunit

 Score =  114 bits (287), Expect = 1e-32
 Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           +KPL DRV +K  E EE TAGG+++ + +KEKP  G V+AVGPG   E G R PL +  G
Sbjct: 2   IKPLGDRVLVKRIEEEEKTAGGIVIPDTAKEKPQEGEVVAVGPGKRLENGERVPLDVKVG 61

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           + V++ KYAG + K  DG  Y+ LR S+++AV+
Sbjct: 62  DKVLFGKYAGTEVK-LDGEEYLILRESDILAVI 93

The chaperonins are 'helper' molecules required for correct folding and subsequent assembly of some proteins. These are required for normal cell growth, and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10). The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Length = 93

>gnl|CDD|238197 cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

 Score =  112 bits (282), Expect = 7e-32
 Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
            IKPLGDRVLVK    EEKT GGI LP +A+ KPQ G+VVAVG G+     +   +SVK 
Sbjct: 1   KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKV 60

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           G +V++ KYAGTE++ +G  +LILRE D++ ++
Sbjct: 61  GDKVLFPKYAGTEVKLDGEEYLILRESDILAVI 93

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface. Length = 93

>gnl|CDD|201050 pfam00166, Cpn10, Chaperonin 10 Kd subunit

 Score =  111 bits (279), Expect = 2e-31
 Identities = 47/91 (51%), Positives = 64/91 (70%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           IKPLGDRVLVK +  EEKT GGI LP +A+ KP  GEVVAVG G       + + VK G 
Sbjct: 1   IKPLGDRVLVKREEAEEKTKGGIILPDSAKEKPNQGEVVAVGPGARNNGEDVPLEVKVGD 60

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           +V++ KYAGTE++ +G  +LIL+E D++ ++
Sbjct: 61  KVLFPKYAGTEVKIDGEEYLILKEKDILAVI 91

This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis. Length = 91

>gnl|CDD|238197 cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

 Score =  110 bits (278), Expect = 3e-31
 Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           +KPL DRV +K  EAEE T GG++L +++KEKP  G V+AVGPG  +E G R PLS+  G
Sbjct: 2   IKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVG 61

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           + V++ KYAG + K  DG  Y+ LR S+++AV+
Sbjct: 62  DKVLFPKYAGTEVK-LDGEEYLILRESDILAVI 93

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface. Length = 93

>gnl|CDD|223312 COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

 Score =  110 bits (278), Expect = 3e-31
 Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
            IKPLGDRVLVK    EEKT GGI LP +A+ KPQ GEVVAVG G+     +L  + VK 
Sbjct: 2   KIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKV 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G +V++ KYAGTE++ +G  +LIL E D++ I+E
Sbjct: 62  GDRVLFGKYAGTEVKIDGEEYLILSESDILAIVE 95

Length = 96

>gnl|CDD|223312 COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

 Score =  108 bits (273), Expect = 1e-30
 Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           +KPL DRV +K  E EE TAGG++L +++KEKP  G V+AVGPG  DE G   PL +  G
Sbjct: 3   IKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVG 62

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           + V++ KYAG + K  DG  Y+ L  S+++A++
Sbjct: 63  DRVLFGKYAGTEVKI-DGEEYLILSESDILAIV 94

Length = 96

>gnl|CDD|201050 pfam00166, Cpn10, Chaperonin 10 Kd subunit

 Score =  100 bits (252), Expect = 2e-27
 Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 2/93 (2%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           +KPL DRV +K  EAEE T GG++L +++KEKP+ G V+AVGPG  +  G   PL +  G
Sbjct: 1   IKPLGDRVLVKREEAEEKTKGGIILPDSAKEKPNQGEVVAVGPGARN-NGEDVPLEVKVG 59

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           + V++ KYAG + K  DG  Y+ L+  +++AV+
Sbjct: 60  DKVLFPKYAGTEVK-IDGEEYLILKEKDILAVI 91

This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis. Length = 91

>gnl|CDD|184730 PRK14533, groES, co-chaperonin GroES; Provisional

 Score = 77.6 bits (191), Expect = 1e-18
 Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           + PLG+R+L+K    E+KT+GGI LP +A+ KP   EVVAVG+         D  +K G 
Sbjct: 3   VIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDDEE----DFDIKVGD 58

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           +VI+SKYAGTE++ +  +++I+  +D++  +E
Sbjct: 59  KVIFSKYAGTEIKIDDEDYIIIDVNDILAKIE 90

Length = 91

>gnl|CDD|184730 PRK14533, groES, co-chaperonin GroES; Provisional

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 6/91 (6%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           + PL +R+ IK  + E+ T GG++L +++KEKP    V+AVG    +E+       I  G
Sbjct: 3   VIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDDEED-----FDIKVG 57

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMA 249
           + V++SKYAG + K  D  +YI +  ++++A
Sbjct: 58  DKVIFSKYAGTEIKIDD-EDYIIIDVNDILA 87

Length = 91

>gnl|CDD|173604 PTZ00414, PTZ00414, 10 kDa heat shock protein; Provisional

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 53  VVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL 112
              P    ++PLG RVLVK     ++T  G+ +P     K   G VVAV           
Sbjct: 4   FTVPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATK----DW 59

Query: 113 DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             +VK G  V+  ++ G+ ++  G    +  ED ++G+L+
Sbjct: 60  TPTVKVGDTVLLPEFGGSSVKVEGEEFFLYNEDSLLGVLQ 99

Length = 100

>gnl|CDD|173604 PTZ00414, PTZ00414, 10 kDa heat shock protein; Provisional

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 156 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSI 215
           +K L+PL  RV +K   A + T  G+L+ E    K + G V+AV     D        ++
Sbjct: 9   LKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKDWTP-----TV 63

Query: 216 APGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
             G+TV+  ++ G+  K  +G  +       ++ VL 
Sbjct: 64  KVGDTVLLPEFGGSSVK-VEGEEFFLYNEDSLLGVLQ 99

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
COG0234	96	GroS Co-chaperonin GroES (HSP10) [Posttranslationa	100.0
COG0234	96	GroS Co-chaperonin GroES (HSP10) [Posttranslationa	100.0
PRK00364	95	groES co-chaperonin GroES; Reviewed	100.0
PTZ00414	100	10 kDa heat shock protein; Provisional	100.0
PTZ00414	100	10 kDa heat shock protein; Provisional	100.0
PRK00364	95	groES co-chaperonin GroES; Reviewed	100.0
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	100.0
PRK14533	91	groES co-chaperonin GroES; Provisional	99.98
PRK14533	91	groES co-chaperonin GroES; Provisional	99.98
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	99.97
KOG1641	104	consensus Mitochondrial chaperonin [Posttranslatio	99.97
PF00166	93	Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208	99.97
PF00166	93	Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208	99.96
KOG1641	104	consensus Mitochondrial chaperonin [Posttranslatio	99.95
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	80.82

>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-37  Score=240.55  Aligned_cols=95  Identities=46%  Similarity=0.844  Sum_probs=92.5

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG  236 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg  236 (252)
                      |+|+||+|||||++.|+|++|+|||+||++|+|||++|+|||||+|..+++|++.|++||+||+|+|++|+|+++++ ||
T Consensus         1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~-dg   79 (96)
T COG0234           1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKI-DG   79 (96)
T ss_pred             CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEE-CC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999995 99


Q ss_pred             eEEEEEeCCceEEEeC
Q 025502          237 TNYIALRASEVMAVLS  252 (252)
Q Consensus       237 ~~y~v~re~DILAvi~  252 (252)
                      ++|++++++||||+++
T Consensus        80 eeylil~e~DILAiv~   95 (96)
T COG0234          80 EEYLILSESDILAIVE   95 (96)
T ss_pred             EEEEEechHHeeEEec
Confidence            9999999999999985

>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-35  Score=232.23  Aligned_cols=94  Identities=53%  Similarity=0.856  Sum_probs=90.5

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCe
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGA  137 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~  137 (252)
                      |+|+||||||||++.++|++|+|||+||++|++||+.|+|+|||+|..++++. +|++||+||+|+|++|+|+++++||+
T Consensus         1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge   80 (96)
T COG0234           1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE   80 (96)
T ss_pred             CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence            58999999999999999999999999999999999999999999999887765 79999999999999999999999999


Q ss_pred             eeEEEeccceeeeec
Q 025502          138 NHLILREDDVVGILE  152 (252)
Q Consensus       138 ~~~il~e~DIlavle  152 (252)
                      +|++|+++||||+++
T Consensus        81 eylil~e~DILAiv~   95 (96)
T COG0234          81 EYLILSESDILAIVE   95 (96)
T ss_pred             EEEEechHHeeEEec
Confidence            999999999999986

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=100.00  E-value=2.3e-34  Score=225.87  Aligned_cols=95  Identities=47%  Similarity=0.859  Sum_probs=92.1

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG  236 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg  236 (252)
                      ++|+||+|||||++.+++++|+|||+||+++++|+++|+|+|||||+++++|++.|++||+||+|+|++|+|++|++ ||
T Consensus         1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~-~~   79 (95)
T PRK00364          1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKI-DG   79 (95)
T ss_pred             CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEE-CC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999997 89


Q ss_pred             eEEEEEeCCceEEEeC
Q 025502          237 TNYIALRASEVMAVLS  252 (252)
Q Consensus       237 ~~y~v~re~DILAvi~  252 (252)
                      ++|+++|++||||+++
T Consensus        80 ~~y~iv~~~DIlavi~   95 (95)
T PRK00364         80 EEYLILRESDILAIVE   95 (95)
T ss_pred             EEEEEEEHHHEEEEeC
Confidence            9999999999999986

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=100.00  E-value=5.2e-34  Score=225.98  Aligned_cols=96  Identities=27%  Similarity=0.490  Sum_probs=89.9

Q ss_pred             eccCccceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcE
Q 025502          151 LETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND  230 (252)
Q Consensus       151 let~~~~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~e  230 (252)
                      +.+..+++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|..+     .|++||+||+|+|++|+|++
T Consensus         4 ~~~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~-----~~~~Vk~GD~Vl~~~y~Gte   78 (100)
T PTZ00414          4 FTVPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD-----WTPTVKVGDTVLLPEFGGSS   78 (100)
T ss_pred             ccccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc-----ccceecCCCEEEEcCCCCcE
Confidence            4566788999999999999999999999999999999999999999999999754     38899999999999999999


Q ss_pred             EEecCCeEEEEEeCCceEEEeC
Q 025502          231 FKGSDGTNYIALRASEVMAVLS  252 (252)
Q Consensus       231 vk~~dg~~y~v~re~DILAvi~  252 (252)
                      |++ ||++|+++|++||||+++
T Consensus        79 vk~-dg~ey~i~~e~DILavi~   99 (100)
T PTZ00414         79 VKV-EGEEFFLYNEDSLLGVLQ   99 (100)
T ss_pred             EEE-CCEEEEEEEhHHEEEEec
Confidence            997 999999999999999985

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=100.00  E-value=5e-34  Score=226.09  Aligned_cols=94  Identities=30%  Similarity=0.597  Sum_probs=88.6

Q ss_pred             ccccccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCceeeeccCCcEEEeecCCceEEEE
Q 025502           55 APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEF  134 (252)
Q Consensus        55 ~~~~~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky~G~ev~~  134 (252)
                      ++++++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|+..    .|++||+||+|+|++|+|++|++
T Consensus         6 ~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~----~~~~Vk~GD~Vl~~~y~Gtevk~   81 (100)
T PTZ00414          6 VPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD----WTPTVKVGDTVLLPEFGGSSVKV   81 (100)
T ss_pred             ccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc----ccceecCCCEEEEcCCCCcEEEE
Confidence            34678899999999999999999999999999999999999999999999743    48999999999999999999999


Q ss_pred             cCeeeEEEeccceeeeec
Q 025502          135 NGANHLILREDDVVGILE  152 (252)
Q Consensus       135 ~g~~~~il~e~DIlavle  152 (252)
                      ||++|++++|+||||+++
T Consensus        82 dg~ey~i~~e~DILavi~   99 (100)
T PTZ00414         82 EGEEFFLYNEDSLLGVLQ   99 (100)
T ss_pred             CCEEEEEEEhHHEEEEec
Confidence            999999999999999986

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=100.00  E-value=2.9e-33  Score=219.68  Aligned_cols=94  Identities=53%  Similarity=0.890  Sum_probs=89.7

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCe
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGA  137 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~  137 (252)
                      ++|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||||+.+++|. +|++||+||+|+|++|+|++|+++|+
T Consensus         1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~   80 (95)
T PRK00364          1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGE   80 (95)
T ss_pred             CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCE
Confidence            46999999999999999999999999999999999999999999999877765 79999999999999999999999999


Q ss_pred             eeEEEeccceeeeec
Q 025502          138 NHLILREDDVVGILE  152 (252)
Q Consensus       138 ~~~il~e~DIlavle  152 (252)
                      +|++++++||||+++
T Consensus        81 ~y~iv~~~DIlavi~   95 (95)
T PRK00364         81 EYLILRESDILAIVE   95 (95)
T ss_pred             EEEEEEHHHEEEEeC
Confidence            999999999999985

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=100.00  E-value=5.1e-33  Score=217.44  Aligned_cols=93  Identities=51%  Similarity=0.913  Sum_probs=90.5

Q ss_pred             eeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCCe
Q 025502          158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT  237 (252)
Q Consensus       158 ~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg~  237 (252)
                      +|+||+|||||++.++|++|+|||+||+++++|+++|+|+|||||+.+++|++.|++|++||+|+|++|+|++|++ ||+
T Consensus         1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~-~~~   79 (93)
T cd00320           1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKL-DGE   79 (93)
T ss_pred             CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEE-CCE
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999999996 899


Q ss_pred             EEEEEeCCceEEEe
Q 025502          238 NYIALRASEVMAVL  251 (252)
Q Consensus       238 ~y~v~re~DILAvi  251 (252)
                      +|+++|++||||++
T Consensus        80 ~y~i~~~~DIla~i   93 (93)
T cd00320          80 EYLILRESDILAVI   93 (93)
T ss_pred             EEEEEEHHHEEEEC
Confidence            99999999999985

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PRK14533 groES co-chaperonin GroES; Provisional

Probab=99.98  E-value=1.1e-32  Score=215.21  Aligned_cols=90  Identities=42%  Similarity=0.734  Sum_probs=85.6

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCceeeeccCCcEEEeecCCceEEEEcCee
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAN  138 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky~G~ev~~~g~~  138 (252)
                      ++|+||||||||++.++|++|+|||+||+++++|++.|+|+|||+|.    ...|++||+||+|+|++|+|++|+++|++
T Consensus         1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~----~~~~~~Vk~GD~Vl~~~y~g~ev~~~~~~   76 (91)
T PRK14533          1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLD----DEEDFDIKVGDKVIFSKYAGTEIKIDDED   76 (91)
T ss_pred             CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCC----ccccccccCCCEEEEccCCCeEEEECCEE
Confidence            47999999999999999999999999999999999999999999985    24589999999999999999999999999


Q ss_pred             eEEEeccceeeeec
Q 025502          139 HLILREDDVVGILE  152 (252)
Q Consensus       139 ~~il~e~DIlavle  152 (252)
                      |++++++||||+++
T Consensus        77 y~iv~e~DILa~i~   90 (91)
T PRK14533         77 YIIIDVNDILAKIE   90 (91)
T ss_pred             EEEEEhHhEEEEee
Confidence            99999999999986

>PRK14533 groES co-chaperonin GroES; Provisional

Probab=99.98  E-value=1.6e-32  Score=214.23  Aligned_cols=90  Identities=34%  Similarity=0.622  Sum_probs=84.9

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG  236 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg  236 (252)
                      ++|+||+|||||++.+++++|+|||+||+++++|++.|+|+|||||..     ..|++||+||+|+|++|+|++|++ ||
T Consensus         1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~-----~~~~~Vk~GD~Vl~~~y~g~ev~~-~~   74 (91)
T PRK14533          1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD-----EEDFDIKVGDKVIFSKYAGTEIKI-DD   74 (91)
T ss_pred             CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCc-----cccccccCCCEEEEccCCCeEEEE-CC
Confidence            469999999999999999999999999999999999999999999862     458999999999999999999997 89


Q ss_pred             eEEEEEeCCceEEEeC
Q 025502          237 TNYIALRASEVMAVLS  252 (252)
Q Consensus       237 ~~y~v~re~DILAvi~  252 (252)
                      ++|+++|++||||+++
T Consensus        75 ~~y~iv~e~DILa~i~   90 (91)
T PRK14533         75 EDYIIIDVNDILAKIE   90 (91)
T ss_pred             EEEEEEEhHhEEEEee
Confidence            9999999999999985

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=99.97  E-value=5.3e-32  Score=211.68  Aligned_cols=92  Identities=53%  Similarity=0.897  Sum_probs=88.1

Q ss_pred             cccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCee
Q 025502           60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAN  138 (252)
Q Consensus        60 ~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~~  138 (252)
                      +|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||||+.++++. +|++||+||+|+|++|+|++++++|++
T Consensus         1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~   80 (93)
T cd00320           1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEE   80 (93)
T ss_pred             CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEE
Confidence            5899999999999999999999999999999999999999999999877765 799999999999999999999999999


Q ss_pred             eEEEeccceeeee
Q 025502          139 HLILREDDVVGIL  151 (252)
Q Consensus       139 ~~il~e~DIlavl  151 (252)
                      |+|++++||||++
T Consensus        81 y~i~~~~DIla~i   93 (93)
T cd00320          81 YLILRESDILAVI   93 (93)
T ss_pred             EEEEEHHHEEEEC
Confidence            9999999999985

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-31  Score=211.91  Aligned_cols=102  Identities=38%  Similarity=0.586  Sum_probs=96.8

Q ss_pred             eeccCccceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCc
Q 025502          150 ILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGN  229 (252)
Q Consensus       150 vlet~~~~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~  229 (252)
                      +.+.+.++++.|+.|||||++++++++|+|||+||+++++|.++|+|+|||||.++++|+.+|.+|++||+|||++|+|+
T Consensus         2 ~~~~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt   81 (104)
T KOG1641|consen    2 ISTSWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGT   81 (104)
T ss_pred             cchhhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCc
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCeEEEEEeCCceEEEe
Q 025502          230 DFKGSDGTNYIALRASEVMAVL  251 (252)
Q Consensus       230 evk~~dg~~y~v~re~DILAvi  251 (252)
                      +|++.|+++|+++|++|+|+.+
T Consensus        82 ~V~l~~~~~~~~fr~e~~l~~~  103 (104)
T KOG1641|consen   82 KVKLGDEDEYHLFRDEDDLLAI  103 (104)
T ss_pred             EEeccCCceeEEecchhhhhhh
Confidence            9998667899999999999876

>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []

Probab=99.97  E-value=6.9e-31  Score=204.84  Aligned_cols=93  Identities=46%  Similarity=0.876  Sum_probs=87.3

Q ss_pred             eeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCCe
Q 025502          158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT  237 (252)
Q Consensus       158 ~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg~  237 (252)
                      +|+||+|||||++.+++++|+|||+||+++++++++|+|||||+|+.+++|+..|++|++||+|+|++|+|+++++ ||+
T Consensus         1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~-~~~   79 (93)
T PF00166_consen    1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKF-DGE   79 (93)
T ss_dssp             EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEE-TTE
T ss_pred             CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEE-CCE
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999997 999


Q ss_pred             EEEEEeCCceEEEe
Q 025502          238 NYIALRASEVMAVL  251 (252)
Q Consensus       238 ~y~v~re~DILAvi  251 (252)
                      +|+++|++||||++
T Consensus        80 ~~~~~~~~dIlavi   93 (93)
T PF00166_consen   80 KYLIVREDDILAVI   93 (93)
T ss_dssp             EEEEEEGGGEEEEE
T ss_pred             EEEEEEHHHeEEEC
Confidence            99999999999986

These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....

>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []

Probab=99.96  E-value=5.2e-30  Score=199.90  Aligned_cols=92  Identities=51%  Similarity=0.875  Sum_probs=85.0

Q ss_pred             cccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCee
Q 025502           60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAN  138 (252)
Q Consensus        60 ~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~~  138 (252)
                      +|+||+|||||++.+++++|+|||+||++++++++.|+|+|||+|+...++. +|++|++||+|+|++|+|+++++||++
T Consensus         1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~   80 (93)
T PF00166_consen    1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEK   80 (93)
T ss_dssp             EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEE
T ss_pred             CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEE
Confidence            5899999999999999999999999999999999999999999999987765 799999999999999999999999999


Q ss_pred             eEEEeccceeeee
Q 025502          139 HLILREDDVVGIL  151 (252)
Q Consensus       139 ~~il~e~DIlavl  151 (252)
                      |++++++||||++
T Consensus        81 ~~~~~~~dIlavi   93 (93)
T PF00166_consen   81 YLIVREDDILAVI   93 (93)
T ss_dssp             EEEEEGGGEEEEE
T ss_pred             EEEEEHHHeEEEC
Confidence            9999999999985

These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....

>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.3e-28  Score=193.00  Aligned_cols=97  Identities=33%  Similarity=0.508  Sum_probs=89.5

Q ss_pred             ccccccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEE
Q 025502           55 APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELE  133 (252)
Q Consensus        55 ~~~~~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~  133 (252)
                      ...++++.|+.|||||++.+++++|+|||+||+++++|+++|+|+|||||.++..+. +|.+||+||+|+|++|+|++|+
T Consensus         5 ~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V~   84 (104)
T KOG1641|consen    5 SWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKVK   84 (104)
T ss_pred             hhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEEe
Confidence            346789999999999999999999999999999999999999999999999887665 7999999999999999999999


Q ss_pred             EcC-eeeEEEeccceeeee
Q 025502          134 FNG-ANHLILREDDVVGIL  151 (252)
Q Consensus       134 ~~g-~~~~il~e~DIlavl  151 (252)
                      +++ ++|.+++++|+|+++
T Consensus        85 l~~~~~~~~fr~e~~l~~~  103 (104)
T KOG1641|consen   85 LGDEDEYHLFRDEDDLLAI  103 (104)
T ss_pred             ccCCceeEEecchhhhhhh
Confidence            984 689999999988765

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=80.82  E-value=1.5  Score=41.42  Aligned_cols=43  Identities=35%  Similarity=0.433  Sum_probs=29.9

Q ss_pred             ccccceeEE-ecCCCC--CCCcceeEEEecCceeeCCCceeeeccCCcEEEeec
Q 025502           76 EEKTDGGIF-LPSAAQ--TKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK  126 (252)
Q Consensus        76 e~kT~gGI~-LP~sa~--~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~k  126 (252)
                      +..-+-||| +|+-.-  -+.-.|+|+|||.|..        .-|+||+|.|-.
T Consensus        51 d~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt--------drkvGDrVayl~   96 (336)
T KOG1197|consen   51 DLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT--------DRKVGDRVAYLN   96 (336)
T ss_pred             HHHHhccccCCCCCCcCCCcccceEEEEecCCcc--------ccccccEEEEec
Confidence            344567888 333211  2446899999999973        469999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
1hx5_A	99	Crystal Structure Of M. Tuberculosis Chaperonin-10		4e-20
1lep_A	99	Three-Dimensional Structure Of The Immunodominant H		1e-17
1we3_O	100	Crystal Structure Of The Chaperonin Complex Cpn60CP		1e-17
1we3_O	100	Crystal Structure Of The Chaperonin Complex Cpn60CP		7e-16
1wnr_A	94	Crystal Structure Of The Cpn10 From Thermus Thermop		4e-17
1wnr_A	94	Crystal Structure Of The Cpn10 From Thermus Thermop		9e-16
3nx6_A	95	Crystal Structure Of Co-Chaperonin, Groes (Xoo4289)		2e-14
1aon_O	97	Crystal Structure Of The Asymmetric Chaperonin Comp		5e-10

>pdb|1HX5|A Chain A, Crystal Structure Of M. Tuberculosis Chaperonin-10 Length = 99

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIA 216
           ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63
Query: 217 PGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
            G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct: 64  EGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 98

>pdb|1LEP|A Chain A, Three-Dimensional Structure Of The Immunodominant Heat- Shock Protein Chaperonin-10 Of Mycobacterium Leprae Length = 99

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEG-NRKPLSIAP 217
           +KPL D++ ++  EAE  T  GL++ E +KEKP  G V+AVGPG  DE+G  R P+ ++ 
Sbjct: 5   IKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSE 64
Query: 218 GNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
           G+ V+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct: 65  GDIVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 98

>pdb|1WE3|O Chain O, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 100

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 59  TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVK 117
           T IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +    ++ + VK
Sbjct: 6   TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVK 65
Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
            G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct: 66  EGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 100

>pdb|1WE3|O Chain O, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 100

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           +KPL DRV +K  E E  T GG++L + +KEKP  G VIAVG G + E G R PL +  G
Sbjct: 8   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 67
Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
           + V+++KY G + +  DG  Y+ L   +++AVL 
Sbjct: 68  DIVVFAKYGGTEIE-IDGEEYVILSERDLLAVLQ 100

>pdb|1WNR|A Chain A, Crystal Structure Of The Cpn10 From Thermus Thermophilus Hb8 Length = 94

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPG 119
           IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +    ++ + VK G
Sbjct: 2   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 61
Query: 120 TQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct: 62  DIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 94

>pdb|1WNR|A Chain A, Crystal Structure Of The Cpn10 From Thermus Thermophilus Hb8 Length = 94

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           +KPL DRV +K  E E  T GG++L + +KEKP  G VIAVG G + E G R PL +  G
Sbjct: 2   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 61
Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
           + V+++KY G + +  DG  Y+ L   +++AVL 
Sbjct: 62  DIVVFAKYGGTEIE-IDGEEYVILSERDLLAVLQ 94

>pdb|3NX6|A Chain A, Crystal Structure Of Co-Chaperonin, Groes (Xoo4289) From Xanthomonas Oryzae Pv. Oryzae Kacc10331 Length = 95

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPG-PLDEEGNRKPLSIAP 217
           +KPL+DRV +K  EA+E +AGG+++ +++KEK + G V+A+G G PLD      P+ +  
Sbjct: 3   IKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPV-VKV 61
Query: 218 GNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           G+ V+Y +YAG+ +K S+G  Y  LR  +++AV+
Sbjct: 62  GDKVIYGQYAGSSYK-SEGVEYKVLREDDILAVI 94

>pdb|1AON|O Chain O, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 97

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 57/94 (60%)
Query: 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAP 217
           +++PL+DRV +K  E E  +AGG++LT ++  K + G V+AVG G + E G  KPL +  
Sbjct: 2   NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61
Query: 218 GNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           G+ V+++   G   +  D    + +  S+++A++
Sbjct: 62  GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIV 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	1e-35
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	6e-32
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	3e-35
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	7e-33
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	5e-34
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	5e-33
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	2e-32
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	1e-30

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A Length = 99

 Score =  121 bits (306), Expect = 1e-35
 Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTV--GKAKLDISVK 117
           +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V 
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63

Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
            G  VIYSKY GTE+++NG  +LIL   DV+ ++ 
Sbjct: 64  EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVS 98

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A Length = 99

 Score =  111 bits (281), Expect = 6e-32
 Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 2/95 (2%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGN-RKPLSIAP 217
           +KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G  R PL +A 
Sbjct: 5   IKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAE 64

Query: 218 GNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
           G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct: 65  GDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 98

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A Length = 100

 Score =  120 bits (303), Expect = 3e-35
 Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
            IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +   +   + VK 
Sbjct: 7   VIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKE 66

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct: 67  GDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 100

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A Length = 100

 Score =  114 bits (288), Expect = 7e-33
 Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           +KPL DRV +K  E E  T GG++L + +KEKP  G VIAVG G + E G R PL +  G
Sbjct: 8   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 67

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           + V+++KY G + +  DG  Y+ L   +++AVL
Sbjct: 68  DIVVFAKYGGTEIE-IDGEEYVILSERDLLAVL 99

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} Length = 95

 Score =  117 bits (295), Expect = 5e-34
 Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           SIKPL DRV+VK    +E + GGI +P +A+ K   GEVVA+G GK +    L    VK 
Sbjct: 2   SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKV 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           G +VIY +YAG+  +  G  + +LREDD++ ++
Sbjct: 62  GDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} Length = 95

 Score =  114 bits (288), Expect = 5e-33
 Identities = 36/93 (38%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           +KPL+DRV +K  EA+E +AGG+++ +++KEK + G V+A+G G   + G+     +  G
Sbjct: 3   IKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKVG 62

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           + V+Y +YAG+ +K S+G  Y  LR  +++AV+
Sbjct: 63  DKVIYGQYAGSSYK-SEGVEYKVLREDDILAVI 94

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O Length = 97

 Score =  113 bits (284), Expect = 2e-32
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           +I+PL DRV+VK K VE K+ GGI L  +A  K   GEV+AVG G+ +   ++  + VK 
Sbjct: 2   NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61

Query: 119 GTQVIYSK-YAGTELEFNGANHLILREDDVVGILE 152
           G  VI++  Y     + +    LI+ E D++ I+E
Sbjct: 62  GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O Length = 97

 Score =  108 bits (272), Expect = 1e-30
 Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           ++PL+DRV +K  E E  +AGG++LT ++  K + G V+AVG G + E G  KPL +  G
Sbjct: 3   IRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVG 62

Query: 219 NTVMYSK-YAGNDFKGSDGTNYIALRASEVMAVL 251
           + V+++  Y     K  D    + +  S+++A++
Sbjct: 63  DIVIFNDGYGVKSEK-IDNEEVLIMSESDILAIV 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	100.0
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	100.0
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	100.0
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	100.0
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	100.0
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	100.0
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	100.0
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	100.0
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	99.91
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	99.91

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=100.00  E-value=5.8e-38  Score=245.47  Aligned_cols=95  Identities=37%  Similarity=0.740  Sum_probs=73.3

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG  236 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg  236 (252)
                      |+|+||+|||||++.++|++|+|||+||++|++|+++|+|||||||+.+++|+++|++||+||+|+|++|+|++|++ ||
T Consensus         1 m~i~PL~DRVlVk~~e~e~kT~gGI~LP~~a~eK~~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~ky~Gtevk~-dg   79 (95)
T 3nx6_A            1 MSIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQYAGSSYKS-EG   79 (95)
T ss_dssp             -CCCCCTTEEEEEEC-------------------CEEEEEEEECSCEECTTSCEECCSCCTTCEEEECTTCSEEEEE-TT
T ss_pred             CCeEEcCCEEEEEEccccccccceEEeCccccCCccccEEEEECCCeECCCCCEEccccCCCCEEEECCcCCeEEEE-CC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999996 99


Q ss_pred             eEEEEEeCCceEEEeC
Q 025502          237 TNYIALRASEVMAVLS  252 (252)
Q Consensus       237 ~~y~v~re~DILAvi~  252 (252)
                      ++|+++|++||||+++
T Consensus        80 ~ey~i~re~DILavie   95 (95)
T 3nx6_A           80 VEYKVLREDDILAVIG   95 (95)
T ss_dssp             EEEEEEEGGGEEEECC
T ss_pred             EEEEEEEHHHEEEEeC
Confidence            9999999999999986

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=100.00  E-value=1.7e-37  Score=244.50  Aligned_cols=95  Identities=49%  Similarity=0.899  Sum_probs=92.5

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCC-CeeeecCCCCCEEEecCCCCcEEEecC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSD  235 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G-~~~p~~Vk~GD~Vlf~kyaG~evk~~d  235 (252)
                      ++|+||+|||||++.++|++|+|||+||+++++||++|+|||||||+++++| +++|++||+||+|+|++|+|++|++ |
T Consensus         3 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vlf~ky~Gtevk~-d   81 (99)
T 1p3h_A            3 VNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKY-N   81 (99)
T ss_dssp             CEEEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEE-T
T ss_pred             ceeEEeCCEEEEEEccccccccceEEeCcccccCCceEEEEEECCCcCcCCCCEEEccccCCCCEEEECCcCCeEEEE-C
Confidence            6899999999999999999999999999999999999999999999999999 9999999999999999999999996 9


Q ss_pred             CeEEEEEeCCceEEEeC
Q 025502          236 GTNYIALRASEVMAVLS  252 (252)
Q Consensus       236 g~~y~v~re~DILAvi~  252 (252)
                      |++|+++|++||||+++
T Consensus        82 geey~i~re~DIlavi~   98 (99)
T 1p3h_A           82 GEEYLILSARDVLAVVS   98 (99)
T ss_dssp             TEEEEEEEGGGEEEEEE
T ss_pred             CEEEEEEEhHhEEEEee
Confidence            99999999999999984

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=100.00  E-value=1.9e-37  Score=243.41  Aligned_cols=95  Identities=34%  Similarity=0.626  Sum_probs=92.4

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecC-CCCcEEEecC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK-YAGNDFKGSD  235 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k-yaG~evk~~d  235 (252)
                      |+|+||+|||||++.++|++|+|||+||+++++||++|+|||||||+.+++|+++|++||+||+|+|++ |+|++|++ |
T Consensus         1 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~k~y~Gtevk~-d   79 (97)
T 1pcq_O            1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKI-D   79 (97)
T ss_dssp             CEEEECSSEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSEECTTSSSCEECSCCTTCEEEECCCSSCEEEEE-T
T ss_pred             CCceEcCCEEEEEEccccccccceEEeCcccccCCcccEEEEEcCceecCCCCEEecccCCCCEEEECCccCCeEEEE-C
Confidence            579999999999999999999999999999999999999999999999999999999999999999999 99999996 9


Q ss_pred             CeEEEEEeCCceEEEeC
Q 025502          236 GTNYIALRASEVMAVLS  252 (252)
Q Consensus       236 g~~y~v~re~DILAvi~  252 (252)
                      |++|+++|++||||+++
T Consensus        80 geey~i~re~DIlavv~   96 (97)
T 1pcq_O           80 NEEVLIMSESDILAIVE   96 (97)
T ss_dssp             TEEEEEEEGGGEEEEEE
T ss_pred             CEEEEEEEhHHEEEEec
Confidence            99999999999999985

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=100.00  E-value=1.7e-37  Score=244.80  Aligned_cols=95  Identities=43%  Similarity=0.777  Sum_probs=92.2

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG  236 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg  236 (252)
                      ++|+||+|||||++.++|++|+|||+||+++++||++|+|||||||+.+++|+++|++||+||+|+|++|+|++|++ ||
T Consensus         6 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~ky~Gtevk~-dg   84 (100)
T 1we3_O            6 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEI-DG   84 (100)
T ss_dssp             CCEEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEEC-SS
T ss_pred             ceeEEeCCEEEEEEccccccccceEEeCcccccCCcCCEEEEECCCcCCCCCCEEeeecCCCCEEEECCCCCeEEEE-CC
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999996 99


Q ss_pred             eEEEEEeCCceEEEeC
Q 025502          237 TNYIALRASEVMAVLS  252 (252)
Q Consensus       237 ~~y~v~re~DILAvi~  252 (252)
                      ++|+++|++||||+++
T Consensus        85 eeyli~re~DIlavi~  100 (100)
T 1we3_O           85 EEYVILSERDLLAVLQ  100 (100)
T ss_dssp             CEEEEECTTTEEEEEC
T ss_pred             EEEEEEEhHHEEEEeC
Confidence            9999999999999985

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=100.00  E-value=1e-36  Score=238.36  Aligned_cols=94  Identities=43%  Similarity=0.711  Sum_probs=71.0

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCe
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGA  137 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~  137 (252)
                      |+|+||+|||||++.++|++|+|||+||++|++||+.|+|+|||||+.++++. +|++||+||+|+|++|+|++|++||+
T Consensus         1 m~i~PL~DRVlVk~~e~e~kT~gGI~LP~~a~eK~~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~ky~Gtevk~dg~   80 (95)
T 3nx6_A            1 MSIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQYAGSSYKSEGV   80 (95)
T ss_dssp             -CCCCCTTEEEEEEC-------------------CEEEEEEEECSCEECTTSCEECCSCCTTCEEEECTTCSEEEEETTE
T ss_pred             CCeEEcCCEEEEEEccccccccceEEeCccccCCccccEEEEECCCeECCCCCEEccccCCCCEEEECCcCCeEEEECCE
Confidence            57999999999999999999999999999999999999999999999987765 89999999999999999999999999


Q ss_pred             eeEEEeccceeeeec
Q 025502          138 NHLILREDDVVGILE  152 (252)
Q Consensus       138 ~~~il~e~DIlavle  152 (252)
                      +|+++||+||||++|
T Consensus        81 ey~i~re~DILavie   95 (95)
T 3nx6_A           81 EYKVLREDDILAVIG   95 (95)
T ss_dssp             EEEEEEGGGEEEECC
T ss_pred             EEEEEEHHHEEEEeC
Confidence            999999999999985

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=100.00  E-value=3.6e-36  Score=236.89  Aligned_cols=94  Identities=44%  Similarity=0.765  Sum_probs=90.2

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCC-c-eeeeccCCcEEEeecCCceEEEEcC
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-K-LDISVKPGTQVIYSKYAGTELEFNG  136 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~-~-vp~~VkvGD~Vl~~ky~G~ev~~~g  136 (252)
                      ++|+||+|||||++.++|++|+|||+||++|++||+.|+|+|||||+.++++ . +|++||+||+|+|++|+|++|++||
T Consensus         3 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vlf~ky~Gtevk~dg   82 (99)
T 1p3h_A            3 VNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNG   82 (99)
T ss_dssp             CEEEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEETT
T ss_pred             ceeEEeCCEEEEEEccccccccceEEeCcccccCCceEEEEEECCCcCcCCCCEEEccccCCCCEEEECCcCCeEEEECC
Confidence            7899999999999999999999999999999999999999999999987665 4 8999999999999999999999999


Q ss_pred             eeeEEEeccceeeeec
Q 025502          137 ANHLILREDDVVGILE  152 (252)
Q Consensus       137 ~~~~il~e~DIlavle  152 (252)
                      ++|++|||+||||+++
T Consensus        83 eey~i~re~DIlavi~   98 (99)
T 1p3h_A           83 EEYLILSARDVLAVVS   98 (99)
T ss_dssp             EEEEEEEGGGEEEEEE
T ss_pred             EEEEEEEhHhEEEEee
Confidence            9999999999999986

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=100.00  E-value=4.6e-36  Score=235.51  Aligned_cols=94  Identities=39%  Similarity=0.657  Sum_probs=90.0

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeec-CCceEEEEcC
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSK-YAGTELEFNG  136 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~k-y~G~ev~~~g  136 (252)
                      |+|+||+|||||++.++|++|+|||+||++|++||++|+|+|||||+.++++. +|++||+||+|+|++ |+|++|++||
T Consensus         1 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~k~y~Gtevk~dg   80 (97)
T 1pcq_O            1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDN   80 (97)
T ss_dssp             CEEEECSSEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSEECTTSSSCEECSCCTTCEEEECCCSSCEEEEETT
T ss_pred             CCceEcCCEEEEEEccccccccceEEeCcccccCCcccEEEEEcCceecCCCCEEecccCCCCEEEECCccCCeEEEECC
Confidence            57999999999999999999999999999999999999999999998876654 899999999999999 9999999999


Q ss_pred             eeeEEEeccceeeeec
Q 025502          137 ANHLILREDDVVGILE  152 (252)
Q Consensus       137 ~~~~il~e~DIlavle  152 (252)
                      ++|+++||+||||+++
T Consensus        81 eey~i~re~DIlavv~   96 (97)
T 1pcq_O           81 EEVLIMSESDILAIVE   96 (97)
T ss_dssp             EEEEEEEGGGEEEEEE
T ss_pred             EEEEEEEhHHEEEEec
Confidence            9999999999999987

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=100.00  E-value=3.7e-36  Score=237.20  Aligned_cols=94  Identities=48%  Similarity=0.832  Sum_probs=89.7

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCe
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGA  137 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~  137 (252)
                      ++|+||+|||||++.++|++|+|||+||+++++||+.|+|+|||||+..+++. +|++||+||+|+|++|+|++|++||+
T Consensus         6 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~ky~Gtevk~dge   85 (100)
T 1we3_O            6 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGE   85 (100)
T ss_dssp             CCEEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEECSSC
T ss_pred             ceeEEeCCEEEEEEccccccccceEEeCcccccCCcCCEEEEECCCcCCCCCCEEeeecCCCCEEEECCCCCeEEEECCE
Confidence            56999999999999999999999999999999999999999999998877655 89999999999999999999999999


Q ss_pred             eeEEEeccceeeeec
Q 025502          138 NHLILREDDVVGILE  152 (252)
Q Consensus       138 ~~~il~e~DIlavle  152 (252)
                      +|+++||+||||+++
T Consensus        86 eyli~re~DIlavi~  100 (100)
T 1we3_O           86 EYVILSERDLLAVLQ  100 (100)
T ss_dssp             EEEEECTTTEEEEEC
T ss_pred             EEEEEEhHHEEEEeC
Confidence            999999999999985

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=99.91  E-value=6.9e-26  Score=181.46  Aligned_cols=88  Identities=15%  Similarity=0.223  Sum_probs=79.2

Q ss_pred             ceeeeeCCeEEEEEec----ccccccceEEeecc-cccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEe--cCCC--
Q 025502          157 KDLKPLNDRVFIKVAE----AEETTAGGLLLTEA-SKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY--SKYA--  227 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e----~e~kT~gGI~Lp~s-akek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf--~kya--  227 (252)
                      ++|+||+|||||++.+    +|++|+|||+||++ ++|||+.|+|||||||.       .++.||+||+|+|  .+|+  
T Consensus         7 m~ikPL~drVlvk~~~~~~~~E~kT~sGIilp~~aakekp~~g~VvAVG~g~-------~~~~vKvGD~Vl~~kg~~~nv   79 (111)
T 1g31_A            7 LPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDV-------PEGFCEVGDLTSLPVGQIRNV   79 (111)
T ss_dssp             CSCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHHHHHSEEEEEEEEECTTS-------CTTSCCTTCEEEEEGGGCEEE
T ss_pred             cCceecCCEEEEEEcccCCCcceEcCCcEEeCCCccccCCceEEEEEECCCC-------ccccccCCCEEEECCCccccC
Confidence            6899999999999988    78999999999999 69999999999999997       3467999999999  5577  


Q ss_pred             ------CcEEEecCC--eEEEEEeCCceEEEeC
Q 025502          228 ------GNDFKGSDG--TNYIALRASEVMAVLS  252 (252)
Q Consensus       228 ------G~evk~~dg--~~y~v~re~DILAvi~  252 (252)
                            |.+++. |+  ++|++++++||||+..
T Consensus        80 p~p~vi~g~i~~-~~~~e~y~i~~~~dIlavy~  111 (111)
T 1g31_A           80 PHPFVALGLKQP-KEIKQKFVTCHYKAIPCLYK  111 (111)
T ss_dssp             CCHHHHTTSSCG-GGCCCCEEEEEGGGCCEECC
T ss_pred             CCcceeeeEEcc-CCcccEEEEEehHHeEEEeC
Confidence                  778984 77  7999999999999863

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=99.91  E-value=4.7e-26  Score=182.45  Aligned_cols=88  Identities=14%  Similarity=0.144  Sum_probs=80.4

Q ss_pred             ccccccCCeEEEEecc----cccccceeEEecCC-CCCCCcceeEEEecCceeeCCCceeeeccCCcEEEee--cCC---
Q 025502           59 TSIKPLGDRVLVKIKT----VEEKTDGGIFLPSA-AQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS--KYA---  128 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~----~e~kT~gGI~LP~s-a~~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~--ky~---  128 (252)
                      ++|+||+|||||++.+    +|++|+|||+||++ +++||+.|+|+|||+|+      .++.||+||+|+|+  +|+   
T Consensus         7 m~ikPL~drVlvk~~~~~~~~E~kT~sGIilp~~aakekp~~g~VvAVG~g~------~~~~vKvGD~Vl~~kg~~~nvp   80 (111)
T 1g31_A            7 LPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDV------PEGFCEVGDLTSLPVGQIRNVP   80 (111)
T ss_dssp             CSCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHHHHHSEEEEEEEEECTTS------CTTSCCTTCEEEEEGGGCEEEC
T ss_pred             cCceecCCEEEEEEcccCCCcceEcCCcEEeCCCccccCCceEEEEEECCCC------ccccccCCCEEEECCCccccCC
Confidence            7899999999999988    78999999999999 69999999999999996      34679999999995  477   


Q ss_pred             -----ceEEEEcC--eeeEEEeccceeeeec
Q 025502          129 -----GTELEFNG--ANHLILREDDVVGILE  152 (252)
Q Consensus       129 -----G~ev~~~g--~~~~il~e~DIlavle  152 (252)
                           |.+++.++  ++|++++++||+|+++
T Consensus        81 ~p~vi~g~i~~~~~~e~y~i~~~~dIlavy~  111 (111)
T 1g31_A           81 HPFVALGLKQPKEIKQKFVTCHYKAIPCLYK  111 (111)
T ss_dssp             CHHHHTTSSCGGGCCCCEEEEEGGGCCEECC
T ss_pred             CcceeeeEEccCCcccEEEEEehHHeEEEeC
Confidence                 78999999  8999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d1p3ha_	99	b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium	8e-30
d1p3ha_	99	b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium	2e-25
d1we3o_	96	b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus therm	4e-28
d1we3o_	96	b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus therm	7e-23
d1aono_	97	b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia c	4e-28
d1aono_	97	b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia c	3e-27

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  105 bits (263), Expect = 8e-30
 Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTV--GKAKLDISVK 117
           +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V 
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63

Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
            G  VIYSKY GTE+++NG  +LIL   DV+ ++ 
Sbjct: 64  EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVS 98

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 93.7 bits (233), Expect = 2e-25
 Identities = 47/96 (48%), Positives = 68/96 (70%), Gaps = 2/96 (2%)

Query: 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGN-RKPLSIA 216
           ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G  R PL +A
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63

Query: 217 PGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
            G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct: 64  EGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 98

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]} Length = 96

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

 Score =  101 bits (252), Expect = 4e-28
 Identities = 45/95 (47%), Positives = 64/95 (67%), Gaps = 1/95 (1%)

Query: 59  TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVK 117
           T IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +   +   + VK
Sbjct: 2   TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVK 61

Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
            G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct: 62  EGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 96

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]} Length = 96

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

 Score = 87.3 bits (216), Expect = 7e-23
 Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           +KPL DRV +K  E E  T GG++L + +KEKP  G VIAVG G + E G R PL +  G
Sbjct: 4   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 63

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           + V+++KY G + +  DG  Y+ L   +++AVL
Sbjct: 64  DIVVFAKYGGTEIE-IDGEEYVILSERDLLAVL 95

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (252), Expect = 4e-28
 Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           +I+PL DRV+VK K VE K+ GGI L  +A  K   GEV+AVG G+ +   ++  + VK 
Sbjct: 2   NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61

Query: 119 GTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 152
           G  VI++   G +  + +    LI+ E D++ I+E
Sbjct: 62  GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

 Score = 98.7 bits (246), Expect = 3e-27
 Identities = 31/93 (33%), Positives = 56/93 (60%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
           ++PL+DRV +K  E E  +AGG++LT ++  K + G V+AVG G + E G  KPL +  G
Sbjct: 3   IRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVG 62

Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
           + V+++   G   +  D    + +  S+++A++
Sbjct: 63  DIVIFNDGYGVKSEKIDNEEVLIMSESDILAIV 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	99.97
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	99.97
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	99.97
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	99.97
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	99.97
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	99.96
d1g31a_	107	GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665	95.37
d1g31a_	107	GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665	95.23
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.84
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	84.44
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	82.19
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	81.14

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1e-31  Score=207.54  Aligned_cols=95  Identities=34%  Similarity=0.609  Sum_probs=90.5

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcE-EEecC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND-FKGSD  235 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~e-vk~~d  235 (252)
                      |+|+||+|||||++.+.+++|+|||+||++++++++.|+|+|||||..+++|+..|+.||+||+|+|++|+|.+ ++ .|
T Consensus         1 m~ikPlgdrVLVk~~~~e~kT~gGIiLp~~~~~~~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~-~d   79 (97)
T d1aono_           1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEK-ID   79 (97)
T ss_dssp             CCEEECTTEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEE-SS
T ss_pred             CCceEcCCEEEEEEcccccEecceEEECCccccCceeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEE-EC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999998865 66 49


Q ss_pred             CeEEEEEeCCceEEEeC
Q 025502          236 GTNYIALRASEVMAVLS  252 (252)
Q Consensus       236 g~~y~v~re~DILAvi~  252 (252)
                      |++|++++++||||+|+
T Consensus        80 g~~y~ii~e~dIlavie   96 (97)
T d1aono_          80 NEEVLIMSESDILAIVE   96 (97)
T ss_dssp             SCEEEEEETTTEEEEEC
T ss_pred             CEEEEEEEHHHEEEEEe
Confidence            99999999999999986

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=7.5e-32  Score=208.26  Aligned_cols=95  Identities=43%  Similarity=0.777  Sum_probs=92.0

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG  236 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg  236 (252)
                      ++|+||+|||||++.+++++|+|||+||++++++++.|+|+|+|+|+.+++|+..|+.+++||+|+|++|+|++|++ ||
T Consensus         2 ~~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~k~~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~~~~g~~v~~-~g   80 (96)
T d1we3o_           2 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEI-DG   80 (96)
T ss_dssp             CCEEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEEC-SS
T ss_pred             CcceEcCCEEEEEEccccceecccEEecccccccceEEEEeeecceEecCCCCEEEeeEEeCCEEEEccCCCcEEEE-CC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999996 89


Q ss_pred             eEEEEEeCCceEEEeC
Q 025502          237 TNYIALRASEVMAVLS  252 (252)
Q Consensus       237 ~~y~v~re~DILAvi~  252 (252)
                      ++|++++++||||+|+
T Consensus        81 ~~y~ii~e~dIlavie   96 (96)
T d1we3o_          81 EEYVILSERDLLAVLQ   96 (96)
T ss_dssp             CEEEEECTTTEEEEEC
T ss_pred             EEEEEEEHHHEEEEeC
Confidence            9999999999999986

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.5e-31  Score=207.71  Aligned_cols=94  Identities=43%  Similarity=0.757  Sum_probs=89.6

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc--eeeeccCCcEEEeecCCceEEEEcC
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK--LDISVKPGTQVIYSKYAGTELEFNG  136 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~--vp~~VkvGD~Vl~~ky~G~ev~~~g  136 (252)
                      ++|+||+|||||++.+.+++|+|||+||++++++++.|+|+|||+|....++.  +|+.||+||+|+|++|+|++|++||
T Consensus         3 m~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~~~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~dg   82 (99)
T d1p3ha_           3 VNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNG   82 (99)
T ss_dssp             CEEEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEETT
T ss_pred             ccceEcCCEEEEEEcchhcccccceEeccccccCceEEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEECC
Confidence            78999999999999999999999999999999999999999999999866543  7899999999999999999999999


Q ss_pred             eeeEEEeccceeeeec
Q 025502          137 ANHLILREDDVVGILE  152 (252)
Q Consensus       137 ~~~~il~e~DIlavle  152 (252)
                      ++|++++++||+|+++
T Consensus        83 ~~y~ii~e~dIlavi~   98 (99)
T d1p3ha_          83 EEYLILSARDVLAVVS   98 (99)
T ss_dssp             EEEEEEEGGGEEEEEE
T ss_pred             EEEEEEEHHHEEEEEe
Confidence            9999999999999996

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=2.2e-31  Score=206.79  Aligned_cols=95  Identities=49%  Similarity=0.899  Sum_probs=90.0

Q ss_pred             ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCC-CeeeecCCCCCEEEecCCCCcEEEecC
Q 025502          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSD  235 (252)
Q Consensus       157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G-~~~p~~Vk~GD~Vlf~kyaG~evk~~d  235 (252)
                      ++|+||+|||||++.+.+++|+|||+||++++++++.|+|||||||..+++| ...|+.||+||+|+|++|+|++|++ |
T Consensus         3 m~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~~~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~-d   81 (99)
T d1p3ha_           3 VNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKY-N   81 (99)
T ss_dssp             CEEEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEE-T
T ss_pred             ccceEcCCEEEEEEcchhcccccceEeccccccCceEEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEE-C
Confidence            5799999999999999999999999999999999999999999999988775 4678899999999999999999997 9


Q ss_pred             CeEEEEEeCCceEEEeC
Q 025502          236 GTNYIALRASEVMAVLS  252 (252)
Q Consensus       236 g~~y~v~re~DILAvi~  252 (252)
                      |++|++++++||||+|+
T Consensus        82 g~~y~ii~e~dIlavi~   98 (99)
T d1p3ha_          82 GEEYLILSARDVLAVVS   98 (99)
T ss_dssp             TEEEEEEEGGGEEEEEE
T ss_pred             CEEEEEEEHHHEEEEEe
Confidence            99999999999999984

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.8e-31  Score=204.33  Aligned_cols=95  Identities=39%  Similarity=0.636  Sum_probs=88.2

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCce-EEEEcC
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGT-ELEFNG  136 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~-ev~~~g  136 (252)
                      |+|+||+|||||++.+.+++|+|||+||++++++++.|+|+|||+|....++. +|+.||+||+|+|++|+|. .+++||
T Consensus         1 m~ikPlgdrVLVk~~~~e~kT~gGIiLp~~~~~~~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~~dg   80 (97)
T d1aono_           1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDN   80 (97)
T ss_dssp             CCEEECTTEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEESSS
T ss_pred             CCceEcCCEEEEEEcccccEecceEEECCccccCceeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEEECC
Confidence            68999999999999999999999999999999999999999999998876654 7999999999999998775 578999


Q ss_pred             eeeEEEeccceeeeecc
Q 025502          137 ANHLILREDDVVGILET  153 (252)
Q Consensus       137 ~~~~il~e~DIlavlet  153 (252)
                      ++|++++++||||++|.
T Consensus        81 ~~y~ii~e~dIlavie~   97 (97)
T d1aono_          81 EEVLIMSESDILAIVEA   97 (97)
T ss_dssp             CEEEEEETTTEEEEECC
T ss_pred             EEEEEEEHHHEEEEEeC
Confidence            99999999999999974

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=4.2e-31  Score=204.04  Aligned_cols=94  Identities=48%  Similarity=0.832  Sum_probs=89.4

Q ss_pred             ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCe
Q 025502           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGA  137 (252)
Q Consensus        59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~  137 (252)
                      +.|+||+|||||++.+++++|+|||+||++++++++.|+|+|+|+|....++. +|+.+++||+|+|++|+|+++++||+
T Consensus         2 ~~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~k~~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~~~~g~~v~~~g~   81 (96)
T d1we3o_           2 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGE   81 (96)
T ss_dssp             CCEEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEECSSC
T ss_pred             CcceEcCCEEEEEEccccceecccEEecccccccceEEEEeeecceEecCCCCEEEeeEEeCCEEEEccCCCcEEEECCE
Confidence            57999999999999999999999999999999999999999999998776654 79999999999999999999999999


Q ss_pred             eeEEEeccceeeeec
Q 025502          138 NHLILREDDVVGILE  152 (252)
Q Consensus       138 ~~~il~e~DIlavle  152 (252)
                      +|++++++||+|++|
T Consensus        82 ~y~ii~e~dIlavie   96 (96)
T d1we3o_          82 EYVILSERDLLAVLQ   96 (96)
T ss_dssp             EEEEECTTTEEEEEC
T ss_pred             EEEEEEHHHEEEEeC
Confidence            999999999999986

>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: GP31 co-chaperonin
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.37  E-value=0.0072  Score=45.69  Aligned_cols=61  Identities=23%  Similarity=0.395  Sum_probs=47.2

Q ss_pred             eeeeeCCeEEEEEec----ccccccceEEeeccc-ccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecC
Q 025502          158 DLKPLNDRVFIKVAE----AEETTAGGLLLTEAS-KEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK  225 (252)
Q Consensus       158 ~l~PL~DRVLVk~~e----~e~kT~gGI~Lp~sa-kek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k  225 (252)
                      .++-+++.|++....    .|.+|.+||+|-... -|-|..|+|++|||....  +     -+|+||.|+++.
T Consensus         4 ~ika~~e~VI~~~~aa~aGdEi~S~~Giiig~r~qgeiPl~~~viSVG~dVpe--~-----~~kvG~~vlLP~   69 (107)
T d1g31a_           4 PIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPE--G-----FCEVGDLTSLPV   69 (107)
T ss_dssp             SCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHHHHHSEEEEEEEEECTTSCT--T-----SCCTTCEEEEEG
T ss_pred             CccccccEEEEEeccccCCceeecccceEEEeccCCCCceeEEEEEeCCCCCH--H-----HhccccEEEccC
Confidence            377889999888754    367899999995432 367899999999996532  2     478999999976

>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: GP31 co-chaperonin
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.23  E-value=0.0042  Score=47.04  Aligned_cols=61  Identities=21%  Similarity=0.289  Sum_probs=47.6

Q ss_pred             cccccCCeEEEEeccc----ccccceeEEecCCCC-CCCcceeEEEecCceeeCCCceeeeccCCcEEEeec
Q 025502           60 SIKPLGDRVLVKIKTV----EEKTDGGIFLPSAAQ-TKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK  126 (252)
Q Consensus        60 ~lkPLgDRVLVk~~~~----e~kT~gGI~LP~sa~-~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~k  126 (252)
                      .++-+++.|++....+    |.+|.+||+|-...+ +-|..|+|++||+....      --.|+||.|+.+.
T Consensus         4 ~ika~~e~VI~~~~aa~aGdEi~S~~Giiig~r~qgeiPl~~~viSVG~dVpe------~~~kvG~~vlLP~   69 (107)
T d1g31a_           4 PIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPE------GFCEVGDLTSLPV   69 (107)
T ss_dssp             SCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHHHHHSEEEEEEEEECTTSCT------TSCCTTCEEEEEG
T ss_pred             CccccccEEEEEeccccCCceeecccceEEEeccCCCCceeEEEEEeCCCCCH------HHhccccEEEccC
Confidence            5778899999977653    679999999954333 46899999999997532      1468999999876

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.84  E-value=0.5  Score=35.54  Aligned_cols=25  Identities=40%  Similarity=0.700  Sum_probs=20.6

Q ss_pred             cceeEEEecCceeeCCCceeeeccCCcEEEeec
Q 025502           94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK  126 (252)
Q Consensus        94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~k  126 (252)
                      ..|+|+++|++.        ..+|+||+|+|..
T Consensus        64 ~~G~V~~vG~~v--------~~~~vGdrV~~~~   88 (147)
T d1qora1          64 AAGIVSKVGSGV--------KHIKAGDRVVYAQ   88 (147)
T ss_dssp             EEEEEEEECTTC--------CSCCTTCEEEESC
T ss_pred             cccceeeeeeec--------ccccccceeeeec
Confidence            589999999985        2589999998743

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=84.44  E-value=0.52  Score=35.41  Aligned_cols=42  Identities=24%  Similarity=0.403  Sum_probs=28.0

Q ss_pred             CcceeEEEecCCccCCCCCeeeecCCCCCEEEecC--CCCcEEEecCCeEEEEEeCCceE
Q 025502          191 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK--YAGNDFKGSDGTNYIALRASEVM  248 (252)
Q Consensus       191 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k--yaG~evk~~dg~~y~v~re~DIL  248 (252)
                      ...|+|+++|++..         .+++||+|.|..  +++       -.+|.++..+.++
T Consensus        63 e~~G~V~~vG~~v~---------~~~vGdrV~~~~~~~G~-------~ae~~~v~~~~~~  106 (147)
T d1qora1          63 EAAGIVSKVGSGVK---------HIKAGDRVVYAQSALGA-------YSSVHNIIADKAA  106 (147)
T ss_dssp             CEEEEEEEECTTCC---------SCCTTCEEEESCCSSCC-------SBSEEEEEGGGEE
T ss_pred             ccccceeeeeeecc---------cccccceeeeecccccc-------ceeEEEEehHHeE
Confidence            35899999998752         489999998643  222       1356666655543

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.19  E-value=0.68  Score=35.05  Aligned_cols=43  Identities=23%  Similarity=0.335  Sum_probs=29.0

Q ss_pred             CcceeEEEecCCccCCCCCeeeecCCCCCEEEecC-CCCcEEEecCCeEEEEEeCCceE
Q 025502          191 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK-YAGNDFKGSDGTNYIALRASEVM  248 (252)
Q Consensus       191 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k-yaG~evk~~dg~~y~v~re~DIL  248 (252)
                      ...|+|+++|++..         .+++||+|+... ..|.   +   .+|+++.++.+.
T Consensus        67 e~~G~V~~vG~~v~---------~~~vGdrV~~~~~~~G~---~---ae~~~v~~~~~~  110 (150)
T d1yb5a1          67 DVAGVIEAVGDNAS---------AFKKGDRVFTSSTISGG---Y---AEYALAADHTVY  110 (150)
T ss_dssp             CEEEEEEEECTTCT---------TCCTTCEEEESCCSSCS---S---BSEEEEEGGGEE
T ss_pred             ceeeeeEeecceee---------ccccCcccccccccccc---c---cccccccccccc
Confidence            46899999999742         589999997542 2221   1   357777766554

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.14  E-value=0.9  Score=34.33  Aligned_cols=42  Identities=29%  Similarity=0.347  Sum_probs=28.9

Q ss_pred             CcceeEEEecCceeeCCCceeeeccCCcEEEeec--CCceEEEEcCeeeEEEecccee
Q 025502           93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK--YAGTELEFNGANHLILREDDVV  148 (252)
Q Consensus        93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~k--y~G~ev~~~g~~~~il~e~DIl  148 (252)
                      ...|+|+++|++.        -.+++||+|+...  ++|      =.+|+++.++.++
T Consensus        67 e~~G~V~~vG~~v--------~~~~vGdrV~~~~~~~G~------~ae~~~v~~~~~~  110 (150)
T d1yb5a1          67 DVAGVIEAVGDNA--------SAFKKGDRVFTSSTISGG------YAEYALAADHTVY  110 (150)
T ss_dssp             CEEEEEEEECTTC--------TTCCTTCEEEESCCSSCS------SBSEEEEEGGGEE
T ss_pred             ceeeeeEeeccee--------eccccCcccccccccccc------ccccccccccccc
Confidence            3589999999985        2579999997542  333      1457777766543