Citrus Sinensis ID: 025560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN
Secondary Structure (PSIPRED)
ccHHHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHcccccHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHccccccccHHHHHHHHHHccccHHHHccccccEEccccccccccccccccccccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccEEEEEEEEccccccccHHHHHHHHHHHHHHccEEEEEcHHHHHHHHHHcHHEEcccccHHHHHHHHHHccccEEccccEEcccHHHHHHHHccccEEEEHHHHHEHHcccccHHHHHccccccEcccccccccccccEEEEccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maeeaaqqPLAFVAETVLKKRKSTEALALTRKAQLELgkyghgqknkkskvediKRPEQFIKQFRDQELDLIRMKQrgkrskkvigkpksKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKvepyvtygypnlvNVKELIYkkgyatvdrqripltdnniieqtlgkyGIICIEDIVHEIANVGPHFKEVVNflgpltlnkpeggllgkkqpfkdggeagnrEEEINELISKMN
Flexible Loop (DISEMBL)
maeeaaqqplafvaETVLKKRKSTEALALTRkaqlelgkyghgqknkkskvedikrpeqfiKQFRDQELDLirmkqrgkrskkvigkpkskllfiiriqgtsdmhrrTKKIlynlrlrriFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYatvdrqripltdnniieqTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNkpeggllgkkqpfkdggeagnrEEEINELISKMN
Low Complexity Region (SEG)
MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN
Disordered region (IsUnstruct)
****************************************************************************************KSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLN**********************************
Disordered Region (DISOPRED)
******Q***AFVAETVLKKRKSTEALALTR*********************DIKRPEQFIKQFRDQELDLIRMK**************SKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN
Disordered Region (DISEMBL)
********PLAFVAETVLKKRKSTEALALTRKAQLELGKY***********EDIKRPEQFIKQFRDQELDLIRMK*********IGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN
Disordered Region (DISPRO)
*********LAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9SAI5	247	60S ribosomal protein L7-	yes	no	0.980	0.995	0.587	9e-74
P60040	242	60S ribosomal protein L7-	no	no	0.936	0.971	0.518	3e-63
Q9LHP1	244	60S ribosomal protein L7-	no	no	0.936	0.963	0.497	1e-61
P60039	242	60S ribosomal protein L7-	no	no	0.936	0.971	0.502	2e-61
O01802	244	60S ribosomal protein L7	yes	no	0.932	0.959	0.453	7e-56
Q6C603	250	60S ribosomal protein L7	yes	no	0.936	0.94	0.456	4e-52
Q7SBD5	248	60S ribosomal protein L7	N/A	no	0.940	0.951	0.485	8e-51
P11874	246	60S ribosomal protein L7	yes	no	0.972	0.991	0.430	9e-51
P17937	249	60S ribosomal protein L7-	yes	no	0.976	0.983	0.458	1e-49
Q4R506	247	60S ribosomal protein L7	N/A	no	0.972	0.987	0.412	1e-49

>sp|Q9SAI5|RL71_ARATH 60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1

 Score =  276 bits (706), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 148/252 (58%), Positives = 188/252 (74%), Gaps = 6/252 (2%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
           MAEE A+  L ++ E VLKKRK+ + LA  RK QLELG  G     KK KV DIKRPE F
Sbjct: 1   MAEEEAKG-LDYIPEIVLKKRKNRDELAFIRKKQLELGNSGK----KKKKVSDIKRPEDF 55

Query: 61  IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
           + +FR +E+D+IRMKQR KR K      KS L+FIIRIQG +DMH +TK+IL NL+L+ +
Sbjct: 56  VHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSV 115

Query: 121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
           F+GVF +ATD + + L KV+PYVTYGYPN  +VK+LIYKKG   ++   +PLTDNNIIEQ
Sbjct: 116 FTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQ 175

Query: 181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLG-KKQPFKDGGEAGNR 239
            LG++ I+ IED+V+EIA VG HF+EV+ FLGPL LNKP   +L  KKQ F +GG+ GNR
Sbjct: 176 ALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNR 235

Query: 240 EEEINELISKMN 251
           E++IN+LISKMN
Sbjct: 236 EDKINDLISKMN 247

Arabidopsis thaliana (taxid: 3702)

>sp|P60040|RL72_ARATH 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1

 Score =  241 bits (615), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 168/239 (70%), Gaps = 4/239 (1%)

Query: 13  VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLI 72
           V E+VLKKRK  E  AL +K  +E  K    +KN +++    KR EQ+ K++ ++E +LI
Sbjct: 8   VPESVLKKRKREEEWALEKKQNVEAAK----KKNAENRKLIFKRAEQYSKEYAEKEKELI 63

Query: 73  RMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGM 132
            +K+  K        P++KLLFIIRI+G + +  +TKKIL  LRLR+IF+GVF++     
Sbjct: 64  SLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT 123

Query: 133 LEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIED 192
           + +L++VEPYVTYG+PNL +VKELIYK+GY  ++ QRI LTDN+I+EQ LGK+GIIC ED
Sbjct: 124 MNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTED 183

Query: 193 IVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251
           ++HEI  VGPHFKE  NFL P  L  P GGL  K+  + +GG+AGNRE  INELI +MN
Sbjct: 184 LIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 168/239 (70%), Gaps = 4/239 (1%)

Query: 13  VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLI 72
           V E+VLKKRK  E  AL +K +LE  K  + +K K        R +Q+ K+++++E +LI
Sbjct: 10  VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLI----FNRAKQYSKEYQEKERELI 65

Query: 73  RMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGM 132
           ++K+  K        P++KLLFIIRI+G + +  +TKKIL  LRLR+IF+GVF++     
Sbjct: 66  QLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT 125

Query: 133 LEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIED 192
           + +L++VEPYVTYGYPNL +VKELIYK+G+  ++ QR  LTDN+I++Q LGK+GIIC+ED
Sbjct: 126 INMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185

Query: 193 IVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251
           ++HEI  VGPHFKE  NFL P  L  P GG+  K+  + +GG+AGNRE  INEL+ +MN
Sbjct: 186 LIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244

Arabidopsis thaliana (taxid: 3702)

>sp|P60039|RL73_ARATH 60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1

 Score =  235 bits (599), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 168/239 (70%), Gaps = 4/239 (1%)

Query: 13  VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLI 72
           V E+VLKK K  E  AL +K +    K    +K+ +++    KR EQ+ K++ +++ +LI
Sbjct: 8   VPESVLKKIKRQEEWALAKKDEAVAAK----KKSVEARKLIFKRAEQYAKEYAEKDNELI 63

Query: 73  RMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGM 132
           R+K+  K        P++KLLFIIRI+G + +  +TKKIL  LRLR+IF+GVF++     
Sbjct: 64  RLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT 123

Query: 133 LEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIED 192
           + +L++VEPYVTYGYPNL +VKELIYK+GY  ++ QRI LTDN+I++Q LGK+GIIC+ED
Sbjct: 124 VNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVED 183

Query: 193 IVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251
           ++HEI  VGPHFKE  NFL P  L  P GGL  K+  + +GG+AGNRE  INEL+ +MN
Sbjct: 184 LIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242

Arabidopsis thaliana (taxid: 3702)

>sp|O01802|RL7_CAEEL 60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1

 Score =  217 bits (552), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 157/238 (65%), Gaps = 4/238 (1%)

Query: 13  VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLI 72
           V ETVLK+RK   A A T+ AQ    K     KNK+ K +  KR E++++++R+ + + +
Sbjct: 10  VPETVLKRRKQ-RADARTKAAQ---HKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGL 65

Query: 73  RMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGM 132
           R+K+  +         + K+ F++RI+G + +H + +K L  LRLR+I +GVFV+     
Sbjct: 66  RLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKAT 125

Query: 133 LEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIED 192
           L +L+ +EPYV +GYPN   + +L+YK+GYA VD  R+P+TDN I+EQ+LGK+ IIC+ED
Sbjct: 126 LPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185

Query: 193 IVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 250
           + HEIA VGPHFKE  NFL P  LN P GG   K   F +GG+ GNRE++IN L+ KM
Sbjct: 186 LAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Caenorhabditis elegans (taxid: 6239)

>sp|Q6C603|RL7_YARLI 60S ribosomal protein L7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPL7 PE=3 SV=1

 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 158/243 (65%), Gaps = 8/243 (3%)

Query: 12  FVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDL 71
            V ET+LKKRK+ + +   R A+            +K KV    R E+++K++R+ E + 
Sbjct: 13  LVPETLLKKRKNADQI---RAAKEAAAAEKKAANAEKDKV-IFSRAEKYVKEYREAEREQ 68

Query: 72  IRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDG 131
           IR+++  K +       + KL+F+IRI+G S M  + +K+L  LRL +I +GVFVR T  
Sbjct: 69  IRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKA 128

Query: 132 MLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIE 191
             E+L+ VEPY+ +GYPNL +V++L+YK+GY  V++QRIPL+DN IIE+ LGKYGIIC+E
Sbjct: 129 TAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICME 188

Query: 192 DIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFK---DGGEAGNREEEINELIS 248
           D++HEI  VGP FK+  NFL P  L+ P GG  G ++ FK   +GG  GNREE IN LI 
Sbjct: 189 DLIHEIYTVGPAFKQASNFLWPFKLSNPSGG-WGVRRKFKHYIEGGSTGNREENINALIK 247

Query: 249 KMN 251
             N
Sbjct: 248 AQN 250

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q7SBD5|RL7_NEUCR 60S ribosomal protein L7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-7 PE=3 SV=2

 Score =  200 bits (508), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 165/241 (68%), Gaps = 5/241 (2%)

Query: 12  FVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDL 71
            V ET+LKKRKS E     R+A++E  K      NK+ +    KR E ++K++RD E + 
Sbjct: 12  LVPETLLKKRKSQEKARAERQAEIEKKK----AANKEKRAVIFKRAETYVKEYRDVEREK 67

Query: 72  IRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDG 131
           IR+++  K+        ++KL+F+IRI+G + +  + +KIL  LRL +I +GVFVR T  
Sbjct: 68  IRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKA 127

Query: 132 MLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIE 191
             E+++ VEP+V YGYPNL +VKELIYK+GY  V++QR+ LTDN+IIE+ LGKYGIIC+E
Sbjct: 128 TAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICME 187

Query: 192 DIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKK-QPFKDGGEAGNREEEINELISKM 250
           D++HEI  VGP+FK+  NFL P  L+ P GG   +K + F +GG+ GNREE IN LI +M
Sbjct: 188 DLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQM 247

Query: 251 N 251
           N
Sbjct: 248 N 248

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P11874|RL7_DICDI 60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3

 Score =  200 bits (508), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 109/253 (43%), Positives = 165/253 (65%), Gaps = 9/253 (3%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDI--KRPE 58
           M+++ A +  A V E++LKKR      A ++K  +++ K G  Q+ + S++  +  KR E
Sbjct: 1   MSQKVATK-TAPVPESILKKR------ATSQKKAVDVAKLGRAQQLRNSRLNSVYFKRAE 53

Query: 59  QFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLR 118
           +++ ++   E + IR+ +  K S      P +K+ F+IRI+G + +  + +K+L  LRL 
Sbjct: 54  KYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLL 113

Query: 119 RIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNII 178
           ++ +GVFV+     + +L+ VEPYV YG+PNL ++KELIYK+G+  +D QRIPLT N+++
Sbjct: 114 QLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMV 173

Query: 179 EQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGN 238
           E+ LGK+GIIC+EDI+HEI   G HFK+V N L P  LN P GG   KK PF  GG+AGN
Sbjct: 174 EKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGN 233

Query: 239 REEEINELISKMN 251
           RE  IN LI +MN
Sbjct: 234 REHLINNLIHRMN 246

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Dictyostelium discoideum (taxid: 44689)

>sp|P17937|RL7A_SCHPO 60S ribosomal protein L7-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl7a PE=3 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/251 (45%), Positives = 156/251 (62%), Gaps = 6/251 (2%)

Query: 1   MAEEA-AQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQ 59
           MAE+A   Q      E +LKKRK  E    TRK ++E       +  KK++ E  KR E 
Sbjct: 1   MAEDAPVVQQTMLEPEVLLKKRKVNER---TRKERVEQA-IAKKEAQKKNRKETFKRAET 56

Query: 60  FIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRR 119
           FI  +R +E + IR+ +  K    +    ++KLLF+IRI G  +M  + +K+L  LRL R
Sbjct: 57  FINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSR 116

Query: 120 IFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIE 179
           I + VFVR    + ++L+ VEPYV YG PNL +V+ELIYK+G+  ++ QRI L+DN +IE
Sbjct: 117 INNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIE 176

Query: 180 QTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKK-QPFKDGGEAGN 238
           + LGKY +I IEDI+HEI NVG HFKEV  FL P TL   +  L+ KK + F +G +AG 
Sbjct: 177 EALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGY 236

Query: 239 REEEINELISK 249
             EEINELI K
Sbjct: 237 CGEEINELIKK 247

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4R506|RL7_MACFA 60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/250 (41%), Positives = 156/250 (62%), Gaps = 6/250 (2%)

Query: 2   AEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFI 61
           AEE  + P   V ET+ KKR++   L + R  +    K+      K  +    ++ + + 
Sbjct: 4   AEEKKKVPA--VPETLKKKRRNFAELKIKRLRK----KFAQKMLRKARRKLIYEKAKHYH 57

Query: 62  KQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIF 121
           K++R      IRM +  +++       + KL F+IRI+G + +  + +K+L  LRLR+IF
Sbjct: 58  KEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIF 117

Query: 122 SGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQT 181
           +G FV+     + +L+ VEPY+ +GYPNL +V ELIYK+GY  ++++RI LTDN +I ++
Sbjct: 118 NGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARS 177

Query: 182 LGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREE 241
           LGKYGIIC+ED++HEI  VG  FKE  NFL P  L+ P GG+  K   F +GG+AGNRE+
Sbjct: 178 LGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNRED 237

Query: 242 EINELISKMN 251
           +IN LI +MN
Sbjct: 238 QINRLIRRMN 247

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
224075682	247	predicted protein [Populus trichocarpa]	0.972	0.987	0.646	9e-92
224053398	247	predicted protein [Populus trichocarpa]	0.972	0.987	0.646	1e-90
255572757	247	60S ribosomal protein L7, putative [Rici	0.980	0.995	0.654	6e-89
225465520	246	PREDICTED: 60S ribosomal protein L7-1 [V	0.980	1.0	0.621	6e-84
83283989	246	putative 60S ribosomal protein L7-like p	0.968	0.987	0.610	5e-82
449461551	249	PREDICTED: 60S ribosomal protein L7-1-li	0.980	0.987	0.611	2e-81
388496062	245	unknown [Lotus japonicus]	0.976	1.0	0.577	4e-78
192912978	246	60S ribosomal protein L7-like protein [E	0.964	0.983	0.6	1e-77
357505403	246	60S ribosomal protein L7 [Medicago trunc	0.980	1.0	0.569	4e-76
351726664	236	uncharacterized protein LOC100306107 [Gl	0.940	1.0	0.565	2e-75

>gi|224075682|ref|XP_002304722.1| predicted protein [Populus trichocarpa] gi|222842154|gb|EEE79701.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (877), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 161/249 (64%), Positives = 204/249 (81%), Gaps = 5/249 (2%)

Query: 4   EAAQQPLAFVAETVLKKRKS-TEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIK 62
           EA    +A+++E +LKKRK   E++ALTRK QLELG++G     +K KVEDIKRPEQ ++
Sbjct: 3   EAEPLEMAYISEVILKKRKHKEESIALTRKTQLELGQHG----GRKRKVEDIKRPEQLVR 58

Query: 63  QFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFS 122
           +FRD+ELDLIRMKQR KR+K  +  P SKLLF+IR+ G +DMH +T+KILYNLRL RIF 
Sbjct: 59  EFRDRELDLIRMKQRTKRAKSALSTPNSKLLFVIRLHGKNDMHPKTRKILYNLRLTRIFH 118

Query: 123 GVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTL 182
           GVF++A+ G+LE+LQKVEPYVTYGYPN+ NV +LIYKKGY  +D +R+PL DNNIIEQ L
Sbjct: 119 GVFLKASPGVLELLQKVEPYVTYGYPNVKNVSDLIYKKGYGKIDNKRVPLIDNNIIEQAL 178

Query: 183 GKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEE 242
           GKYGI+C+EDIVHE+AN GPHF+E++NFLG  +LNKP+ GL GK+  FKDGG+ GNRE +
Sbjct: 179 GKYGILCLEDIVHEVANAGPHFREILNFLGSFSLNKPKEGLQGKRALFKDGGDTGNRENQ 238

Query: 243 INELISKMN 251
           IN+LI KMN
Sbjct: 239 INDLIDKMN 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053398|ref|XP_002297799.1| predicted protein [Populus trichocarpa] gi|222845057|gb|EEE82604.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 161/249 (64%), Positives = 202/249 (81%), Gaps = 5/249 (2%)

Query: 4   EAAQQPLAFVAETVLKKRKSTE-ALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIK 62
           EA  Q L +V E +LKKRK  E ++ALTRK QLELG+ G     KK +++DIKRPEQF++
Sbjct: 3   EAEPQALTYVPEVILKKRKHKEESIALTRKTQLELGQNG----GKKRRMDDIKRPEQFVR 58

Query: 63  QFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFS 122
           +FRD+ELDLIRMKQR KR+K  +  P SKLLF+IR+ G +DMH +T+ ILY LRL RIF 
Sbjct: 59  EFRDKELDLIRMKQRTKRAKSALSIPNSKLLFVIRVHGKNDMHPKTRNILYKLRLTRIFH 118

Query: 123 GVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTL 182
           GVF++AT G+LE+LQKVEPYVTYGYPNL NV +LIYKKGY  +D +R+PL DNNIIEQ L
Sbjct: 119 GVFLKATQGVLELLQKVEPYVTYGYPNLKNVSDLIYKKGYGKIDNKRVPLIDNNIIEQAL 178

Query: 183 GKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEE 242
           GK+GI+C+EDIVHE+AN GPHFKE+++FLG  +LNKP+ GLLGKK  + DGG+ GNRE +
Sbjct: 179 GKHGIVCLEDIVHEVANAGPHFKEIISFLGSFSLNKPKEGLLGKKALYIDGGDTGNRENQ 238

Query: 243 INELISKMN 251
           IN+LI+KMN
Sbjct: 239 INDLINKMN 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572757|ref|XP_002527311.1| 60S ribosomal protein L7, putative [Ricinus communis] gi|223533311|gb|EEF35063.1| 60S ribosomal protein L7, putative [Ricinus communis]

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 165/252 (65%), Positives = 202/252 (80%), Gaps = 6/252 (2%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTE-ALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQ 59
           MAEE ++ P+AF++E VLKKRK  E +LALTRK QLE GK     + +K K +DIKRPEQ
Sbjct: 1   MAEEESK-PMAFISEIVLKKRKHKEESLALTRKTQLESGK----SRGQKRKFDDIKRPEQ 55

Query: 60  FIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRR 119
           FIK FRD+ELD IRMKQR K+ K     PKSKL+FI+RI G + MH RT+KILYNL+L R
Sbjct: 56  FIKDFRDKELDFIRMKQRAKKPKSASLTPKSKLMFIVRIPGKNAMHPRTRKILYNLKLLR 115

Query: 120 IFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIE 179
            F GVFV+A+ G+LE LQ+VEPYVT+GYPNL NV ELI KKGY  ++ QR+PL DNNI+E
Sbjct: 116 NFHGVFVKASAGLLEKLQRVEPYVTFGYPNLKNVTELIRKKGYGMLNNQRVPLIDNNIVE 175

Query: 180 QTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNR 239
           Q LGK+GI+C+EDI+HEIANVGPHFK+V +FLGP  L+KP+GGL GKK  FKDGG+ GNR
Sbjct: 176 QALGKFGILCLEDIIHEIANVGPHFKDVNSFLGPFALSKPKGGLQGKKALFKDGGDTGNR 235

Query: 240 EEEINELISKMN 251
           E++IN+LI KMN
Sbjct: 236 EDKINDLIDKMN 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465520|ref|XP_002272916.1| PREDICTED: 60S ribosomal protein L7-1 [Vitis vinifera] gi|297745096|emb|CBI38935.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 156/251 (62%), Positives = 201/251 (80%), Gaps = 5/251 (1%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
           MA+E  + PL ++ E +LKKRKS E  A+ R+ QLE        ++K++K  ++K  EQ+
Sbjct: 1   MADEEPK-PLTYIPEVILKKRKSNEEWAIKRRQQLE----ERNLRSKQNKAFNLKTAEQY 55

Query: 61  IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
           I+++R++ELDLI+MK RGK+ K  +    SKLLF+IRIQG +DMH +T+KILY LRLR+I
Sbjct: 56  IQEYRNRELDLIQMKHRGKKRKLSLETLDSKLLFVIRIQGKNDMHPKTRKILYFLRLRKI 115

Query: 121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
           F GV V+A +G+LE+LQKVEPYV YGYPNL NV+ELIYKKG+A ++ Q++PLTDNNIIEQ
Sbjct: 116 FDGVLVKANEGILEMLQKVEPYVAYGYPNLKNVRELIYKKGFAKIEGQKVPLTDNNIIEQ 175

Query: 181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNRE 240
            LGK+GI+CIEDIVHEIANVGPHFKEV +FL P TLNKPEGG  GKK+ FK+GG+AGNR 
Sbjct: 176 ALGKHGIMCIEDIVHEIANVGPHFKEVNSFLWPFTLNKPEGGFQGKKKLFKEGGDAGNRG 235

Query: 241 EEINELISKMN 251
           ++INELI KMN
Sbjct: 236 DKINELIGKMN 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83283989|gb|ABC01902.1| putative 60S ribosomal protein L7-like protein [Solanum tuberosum]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 155/254 (61%), Positives = 197/254 (77%), Gaps = 11/254 (4%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVED--IKRPE 58
           MA+E  Q PL ++ E +LKKRK+ E  A+ RK QLE       QK +K K +   IK+PE
Sbjct: 1   MADEVPQ-PLNYIPEVILKKRKNNEEWAIRRKLQLE-------QKVRKLKSDSFVIKKPE 52

Query: 59  QFIKQFRDQELDLIRMKQRGKR-SKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRL 117
           QFI+++RD+E+DL++MKQRGKR +K  +    SKLLF+IRI G SDMH RT+K LY+LRL
Sbjct: 53  QFIREYRDKEMDLVQMKQRGKRRAKGALTTSDSKLLFVIRIGGKSDMHPRTRKALYSLRL 112

Query: 118 RRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNI 177
           R+IFSGVFV+A +  +E+LQKVEP+VTYGYPNL +VK+LIYKKG    D QR+PLT N+I
Sbjct: 113 RKIFSGVFVKANERTVEILQKVEPFVTYGYPNLKSVKDLIYKKGSGKTDNQRVPLTSNDI 172

Query: 178 IEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAG 237
           +EQTLG+YGIIC+ED+V EIA+VGPHFKEV +FL P  L KPE  L GKK+ + DGG++G
Sbjct: 173 VEQTLGQYGIICLEDVVREIASVGPHFKEVTSFLCPFALTKPEKALQGKKKRYNDGGDSG 232

Query: 238 NREEEINELISKMN 251
           NRE+ INELISKMN
Sbjct: 233 NREDHINELISKMN 246

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461551|ref|XP_004148505.1| PREDICTED: 60S ribosomal protein L7-1-like [Cucumis sativus] gi|449530031|ref|XP_004172000.1| PREDICTED: 60S ribosomal protein L7-1-like [Cucumis sativus] gi|449532976|ref|XP_004173453.1| PREDICTED: 60S ribosomal protein L7-1-like [Cucumis sativus]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/252 (61%), Positives = 198/252 (78%), Gaps = 6/252 (2%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
           MAEE  + PLA++ E +LKKRK  EA AL RK QLEL K      +KK+K   IK PE+F
Sbjct: 3   MAEEDPK-PLAYIPEIILKKRKVNEAAALRRKEQLELRKLS----SKKNKDGFIKLPEEF 57

Query: 61  IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
           ++++R +ELDL++MK R KR +  I    SKL+FIIRIQG +DMH +T+KILY+L L RI
Sbjct: 58  VREYRARELDLVKMKHRIKRKRSAIVPSTSKLIFIIRIQGKNDMHPKTRKILYSLGLSRI 117

Query: 121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
           FS VF +A + +L  LQ+VEPYVTYGYPNL NV+ELIYKKG+A +D+QR+PLTDNNIIEQ
Sbjct: 118 FSAVFAKANESILGKLQRVEPYVTYGYPNLKNVRELIYKKGFAKIDKQRVPLTDNNIIEQ 177

Query: 181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLL-GKKQPFKDGGEAGNR 239
            LGK+GI+C+ED+VHEIANVGPHFKEV++FL P  L KP G  L GKK  +K+GG++GNR
Sbjct: 178 ALGKHGIVCMEDMVHEIANVGPHFKEVISFLWPFELEKPGGRCLQGKKSSYKEGGDSGNR 237

Query: 240 EEEINELISKMN 251
           E++IN+LI++MN
Sbjct: 238 EDDINDLINEMN 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496062|gb|AFK36097.1| unknown [Lotus japonicus]

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 145/251 (57%), Positives = 190/251 (75%), Gaps = 6/251 (2%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
           MAEE AQ  L  ++E  LKKRK+ EALAL +KAQ +   +     N     + IK+PE F
Sbjct: 1   MAEEEAQA-LNTISEVTLKKRKNNEALALRKKAQFQYKNFQIRNNN-----DSIKKPEDF 54

Query: 61  IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
           I ++R+QELDLIRMK+R KR+   +  P SK + +IRIQG  DMH  T+K L++L LR+I
Sbjct: 55  IFEYRNQELDLIRMKRRVKRNPSELLTPNSKPIIVIRIQGKKDMHPVTRKALFSLGLRKI 114

Query: 121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
           FS VFV+ ++G++  LQ+VEP+VTYGYPNL ++KEL+YKKG+A +D++++PLTDNNIIEQ
Sbjct: 115 FSAVFVKPSEGIMAKLQRVEPFVTYGYPNLKSIKELLYKKGHAKIDKRKVPLTDNNIIEQ 174

Query: 181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNRE 240
            LGK+GI+C+ED+VHEI N GPHFKEVV F+ P  LNKP  GL G K  +KDGG+AGNRE
Sbjct: 175 ELGKFGIVCMEDMVHEIENTGPHFKEVVRFMRPFDLNKPSDGLKGSKTAYKDGGDAGNRE 234

Query: 241 EEINELISKMN 251
           + INELI+KMN
Sbjct: 235 DSINELINKMN 245

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192912978|gb|ACF06597.1| 60S ribosomal protein L7-like protein [Elaeis guineensis]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/255 (60%), Positives = 186/255 (72%), Gaps = 13/255 (5%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVED----IKR 56
           MAEE +Q PLA+V ETVLKKRK+ E  A+ R+ QL+          KK K ED    I+R
Sbjct: 1   MAEEESQ-PLAYVHETVLKKRKNNEEWAIKRRDQLD--------ARKKRKKEDLKLAIRR 51

Query: 57  PEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLR 116
           PE+F+K++RD+ELDLIRMKQR KR K      KS LLF+IRI+G+ DMH RT+KIL  LR
Sbjct: 52  PEEFVKEYRDKELDLIRMKQRLKRRKLFSDNIKSDLLFVIRIRGSKDMHPRTRKILNLLR 111

Query: 117 LRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNN 176
           LR I SGVFV+  +  L++L  VEP++TYGYP+L NV+ELIYKKG   +D+Q  PLT+NN
Sbjct: 112 LRHILSGVFVKTNEATLKMLLSVEPFITYGYPSLKNVRELIYKKGCGMIDKQSAPLTNNN 171

Query: 177 IIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEA 236
           +IEQ LGKYGIICIEDIVHEIA VG HFKEV  FL P  L  PE   L  K+P+KDGG++
Sbjct: 172 VIEQALGKYGIICIEDIVHEIATVGSHFKEVTKFLWPFRLKAPERRPLLTKKPYKDGGDS 231

Query: 237 GNREEEINELISKMN 251
           GN EE INELI K+N
Sbjct: 232 GNHEESINELIDKLN 246

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505403|ref|XP_003622990.1| 60S ribosomal protein L7 [Medicago truncatula] gi|355498005|gb|AES79208.1| 60S ribosomal protein L7 [Medicago truncatula] gi|388509378|gb|AFK42755.1| unknown [Medicago truncatula]

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 143/251 (56%), Positives = 192/251 (76%), Gaps = 5/251 (1%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
           MAEE   + L ++ E +LKKRK +EA AL++KAQL+   +    + +KSK + IK+PE F
Sbjct: 1   MAEEEQPKDLNYIPEVILKKRKHSEAWALSKKAQLQKKSF----QLRKSK-DFIKKPEDF 55

Query: 61  IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
           I ++R++E+DLIRMK+R K  +    KP +K + +IRIQG  DMH  T+K L++L LRRI
Sbjct: 56  IFEYRNREIDLIRMKRRVKWRRGDKSKPSNKPIIVIRIQGKQDMHATTRKHLFSLGLRRI 115

Query: 121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
           FS VFV+ TDG++  L +VEPYVTYGY NL  +KELIYKKG+A +D++++PLTDNN+IEQ
Sbjct: 116 FSAVFVKPTDGVMAKLARVEPYVTYGYANLKTIKELIYKKGHAKIDKRKVPLTDNNLIEQ 175

Query: 181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNRE 240
            LGK+G++CIEDIVH+I NVGPHFKEVV F+ P  LNKP  GL G K  +KDGG++G+RE
Sbjct: 176 ELGKFGVVCIEDIVHQIDNVGPHFKEVVRFMWPFELNKPADGLKGLKNRYKDGGDSGDRE 235

Query: 241 EEINELISKMN 251
           + INELI+KMN
Sbjct: 236 DLINELINKMN 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726664|ref|NP_001237646.1| uncharacterized protein LOC100306107 [Glycine max] gi|255627573|gb|ACU14131.1| unknown [Glycine max]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 142/251 (56%), Positives = 189/251 (75%), Gaps = 15/251 (5%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
           MAEE ++ PL +++E +LKKRK+TEA AL +K Q +  KY           + IK+PE F
Sbjct: 1   MAEEDSK-PLNYISEVILKKRKNTEAWALRKKEQFQQKKY-----------QSIKKPEDF 48

Query: 61  IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
           I ++R++E+DLIRMK+R KR    + +  S  L IIRIQG  DMH RT+K+LY+L LRR 
Sbjct: 49  IHEYRNKEVDLIRMKRRVKRK---VPEANSNTLIIIRIQGKKDMHPRTRKVLYSLGLRRR 105

Query: 121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
           FS VFV+ ++G++  LQ+VEPYVTYGYPNL ++KELIYKKG+A ++++++PLTDNNIIEQ
Sbjct: 106 FSAVFVKPSEGIMAKLQRVEPYVTYGYPNLKSIKELIYKKGHARMEQRKVPLTDNNIIEQ 165

Query: 181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNRE 240
            LGK+GI+CIED+VH+I N GPHFKEVV F+ P  LNKP  GL G K  FK+ G+ GNRE
Sbjct: 166 ELGKFGIVCIEDMVHQIYNAGPHFKEVVRFMWPFELNKPAEGLKGSKTSFKEDGDTGNRE 225

Query: 241 EEINELISKMN 251
           + INELI+KM+
Sbjct: 226 DLINELINKMS 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2025817	247	AT1G80750 [Arabidopsis thalian	0.980	0.995	0.587	1.8e-71
TAIR|locus:2038741	242	AT2G01250 [Arabidopsis thalian	0.936	0.971	0.518	3.1e-60
TAIR|locus:2086809	244	AT3G13580 [Arabidopsis thalian	0.936	0.963	0.497	3.5e-59
TAIR|locus:2051874	247	AT2G44120 [Arabidopsis thalian	0.968	0.983	0.491	9.3e-59
UNIPROTKB|G4N5C7	248	MGG_05237 "60S ribosomal prote	0.936	0.947	0.487	3.7e-55
WB|WBGene00004418	244	rpl-7 [Caenorhabditis elegans	0.932	0.959	0.453	1.5e-53
DICTYBASE|DDB_G0276441	246	rpl7 "S60 ribosomal protein L7	0.972	0.991	0.430	4.4e-52
ASPGD|ASPL0000069390	251	AN7107 [Emericella nidulans (t	0.952	0.952	0.447	4e-51
POMBASE|SPAC664.06	249	rlp7 "ribosomal protein L7-lik	0.972	0.979	0.460	5.2e-49
UNIPROTKB|Q58DT1	248	RPL7 "60S ribosomal protein L7	0.976	0.987	0.416	3.7e-48

TAIR|locus:2025817 AT1G80750 [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 148/252 (58%), Positives = 188/252 (74%)

Query:     1 MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
             MAEE A+  L ++ E VLKKRK+ + LA  RK QLELG  G     KK KV DIKRPE F
Sbjct:     1 MAEEEAKG-LDYIPEIVLKKRKNRDELAFIRKKQLELGNSG----KKKKKVSDIKRPEDF 55

Query:    61 IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
             + +FR +E+D+IRMKQR KR K      KS L+FIIRIQG +DMH +TK+IL NL+L+ +
Sbjct:    56 VHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSV 115

Query:   121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
             F+GVF +ATD + + L KV+PYVTYGYPN  +VK+LIYKKG   ++   +PLTDNNIIEQ
Sbjct:   116 FTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQ 175

Query:   181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLG-KKQPFKDGGEAGNR 239
              LG++ I+ IED+V+EIA VG HF+EV+ FLGPL LNKP   +L  KKQ F +GG+ GNR
Sbjct:   176 ALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNR 235

Query:   240 EEEINELISKMN 251
             E++IN+LISKMN
Sbjct:   236 EDKINDLISKMN 247

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2038741 AT2G01250 [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 124/239 (51%), Positives = 168/239 (70%)

Query:    13 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLI 72
             V E+VLKKRK  E  AL +K  +E  K    +KN +++    KR EQ+ K++ ++E +LI
Sbjct:     8 VPESVLKKRKREEEWALEKKQNVEAAK----KKNAENRKLIFKRAEQYSKEYAEKEKELI 63

Query:    73 RMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGM 132
              +K+  K        P++KLLFIIRI+G + +  +TKKIL  LRLR+IF+GVF++     
Sbjct:    64 SLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT 123

Query:   133 LEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIED 192
             + +L++VEPYVTYG+PNL +VKELIYK+GY  ++ QRI LTDN+I+EQ LGK+GIIC ED
Sbjct:   124 MNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTED 183

Query:   193 IVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251
             ++HEI  VGPHFKE  NFL P  L  P GGL  K+  + +GG+AGNRE  INELI +MN
Sbjct:   184 LIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2086809 AT3G13580 [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 119/239 (49%), Positives = 168/239 (70%)

Query:    13 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLI 72
             V E+VLKKRK  E  AL +K +LE  K  + +K K        R +Q+ K+++++E +LI
Sbjct:    10 VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLI----FNRAKQYSKEYQEKERELI 65

Query:    73 RMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGM 132
             ++K+  K        P++KLLFIIRI+G + +  +TKKIL  LRLR+IF+GVF++     
Sbjct:    66 QLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT 125

Query:   133 LEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIED 192
             + +L++VEPYVTYGYPNL +VKELIYK+G+  ++ QR  LTDN+I++Q LGK+GIIC+ED
Sbjct:   126 INMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185

Query:   193 IVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251
             ++HEI  VGPHFKE  NFL P  L  P GG+  K+  + +GG+AGNRE  INEL+ +MN
Sbjct:   186 LIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2051874 AT2G44120 [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 122/248 (49%), Positives = 172/248 (69%)

Query:     4 EAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQ 63
             E A+  +  V E+VLKK K  E  AL +K +    K    +K+ +++    KR EQ+ K+
Sbjct:     5 EMAESKVV-VPESVLKKIKRQEEWALAKKDEAVAAK----KKSVEARKLIFKRAEQYAKE 59

Query:    64 FRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSG 123
             + +++ +LIR+K+  K        P++KLLFIIRI+G + +  +TKKIL  LRLR+IF+G
Sbjct:    60 YAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNG 119

Query:   124 VFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLG 183
             VF++     + +L++VEPYVTYGYPNL +VKELIYK+GY  ++ QRI LTDN+I++Q LG
Sbjct:   120 VFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALG 179

Query:   184 KYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEI 243
             K+GIIC+ED++HEI  VGPHFKE  NFL P  L  P GGL  K+  + +GG+AGNRE  I
Sbjct:   180 KHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFI 239

Query:   244 NELISKMN 251
             NEL+ +MN
Sbjct:   240 NELVRRMN 247

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|G4N5C7 MGG_05237 "60S ribosomal protein L7" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 117/240 (48%), Positives = 163/240 (67%)

Query:    13 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLI 72
             V ET+LKKRKS E     R A+ E  K  +  K+K+  +   KR E+++K++RD E + I
Sbjct:    13 VPETLLKKRKSQEKARAERLAEQEKTKKAN--KDKRQVI--FKRAEKYVKEYRDAEREKI 68

Query:    73 RMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGM 132
             R+ +  K++       + KL+F++RI+G + +  + +KIL  LRL +I +G FVR T   
Sbjct:    69 RLNRVAKQAGDFYVPAEQKLIFVVRIKGINKIAPKPRKILQLLRLLQINNGCFVRVTKAT 128

Query:   133 LEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIED 192
             +E+++ VEP+V YGYPNL  VKELIYK+GY  VD+QRI LTDN+IIE  LG+YGIICIED
Sbjct:   129 MEMIKVVEPWVAYGYPNLKTVKELIYKRGYGKVDKQRIALTDNSIIEANLGQYGIICIED 188

Query:   193 IVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKK-QPFKDGGEAGNREEEINELISKMN 251
             ++HEI  VGP+FK+  NFL P  L+ P GG   +K + F +GG+ GNREE IN LI +MN
Sbjct:   189 LIHEIFTVGPNFKQASNFLWPFKLSNPTGGFRSRKFRHFIEGGDLGNREEHINALIRQMN 248

GO:0043581 "mycelium development" evidence=IEP

WB|WBGene00004418 rpl-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 108/238 (45%), Positives = 157/238 (65%)

Query:    13 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLI 72
             V ETVLK+RK   A A T+ AQ    K     KNK+ K +  KR E++++++R+ + + +
Sbjct:    10 VPETVLKRRKQ-RADARTKAAQ---HKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGL 65

Query:    73 RMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGM 132
             R+K+  +         + K+ F++RI+G + +H + +K L  LRLR+I +GVFV+     
Sbjct:    66 RLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKAT 125

Query:   133 LEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIED 192
             L +L+ +EPYV +GYPN   + +L+YK+GYA VD  R+P+TDN I+EQ+LGK+ IIC+ED
Sbjct:   126 LPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185

Query:   193 IVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 250
             + HEIA VGPHFKE  NFL P  LN P GG   K   F +GG+ GNRE++IN L+ KM
Sbjct:   186 LAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

DICTYBASE|DDB_G0276441 rpl7 "S60 ribosomal protein L7" [Dictyostelium discoideum (taxid:44689)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 109/253 (43%), Positives = 165/253 (65%)

Query:     1 MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDI--KRPE 58
             M+++ A +  A V E++LKKR      A ++K  +++ K G  Q+ + S++  +  KR E
Sbjct:     1 MSQKVATKT-APVPESILKKR------ATSQKKAVDVAKLGRAQQLRNSRLNSVYFKRAE 53

Query:    59 QFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLR 118
             +++ ++   E + IR+ +  K S      P +K+ F+IRI+G + +  + +K+L  LRL 
Sbjct:    54 KYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLL 113

Query:   119 RIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNII 178
             ++ +GVFV+     + +L+ VEPYV YG+PNL ++KELIYK+G+  +D QRIPLT N+++
Sbjct:   114 QLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMV 173

Query:   179 EQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGN 238
             E+ LGK+GIIC+EDI+HEI   G HFK+V N L P  LN P GG   KK PF  GG+AGN
Sbjct:   174 EKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGN 233

Query:   239 REEEINELISKMN 251
             RE  IN LI +MN
Sbjct:   234 REHLINNLIHRMN 246

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000069390 AN7107 [Emericella nidulans (taxid:162425)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 110/246 (44%), Positives = 159/246 (64%)

Query:     8 QPLAFVAETVLKKRKSTE-ALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRD 66
             Q    V ET+LKKRKS E A A  R+   E  K     K K++ +   KR E +++++R+
Sbjct:    11 QDQVLVPETLLKKRKSQEQARAAARE---EAAKKKAANKEKRAVI--FKRAESYVQEYRN 65

Query:    67 QELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFV 126
              E + IR+ +  ++        + KL+F++RI+G + +  + +KIL  LRL +I +G FV
Sbjct:    66 AEREKIRLARVARQEGNFYVPEEPKLIFVVRIKGINKIAPQPRKILQLLRLLQINNGTFV 125

Query:   127 RATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYG 186
             + T    E+L  + PYV YGYPNL +V+ELIYK+GY  +D+QR+ LTDN IIE+ LGKYG
Sbjct:   126 KLTKATQEMLTIINPYVAYGYPNLKSVRELIYKRGYGKIDKQRVALTDNQIIEEHLGKYG 185

Query:   187 IICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKK-QPFKDGGEAGNREEEINE 245
             I+C+ED++HEI  VGP+FK+  NFL P  L+ P GG   +K + +  GG+ GNREE IN 
Sbjct:   186 IVCMEDLIHEIYTVGPNFKQANNFLWPFKLSNPTGGFRTRKFKHYIQGGDTGNREENINA 245

Query:   246 LISKMN 251
             LI +MN
Sbjct:   246 LIRQMN 251

GO:0005730 "nucleolus" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

POMBASE|SPAC664.06 rlp7 "ribosomal protein L7-like Rlp7 involved in ribosome biogenesis (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 116/252 (46%), Positives = 158/252 (62%)

Query:     1 MAEEA--AQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPE 58
             MAE+A   QQ +    E +LKKRK  E    TRK ++E       +  KK++ E  KR E
Sbjct:     1 MAEDAPVVQQTM-LEPEVLLKKRKVNER---TRKERVEQA-IAKKEAQKKNRKETFKRAE 55

Query:    59 QFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLR 118
              FI  +R +E + IR+ +  K    +    ++KLLF+IRI G  +M  + +K+L  LRL 
Sbjct:    56 TFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLS 115

Query:   119 RIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNII 178
             RI + VFVR    + ++L+ VEPYV YG PNL +V+ELIYK+G+  ++ QRI L+DN +I
Sbjct:   116 RINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALI 175

Query:   179 EQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKK-QPFKDGGEAG 237
             E+ LGKY +I IEDI+HEI NVG HFKEV  FL P TL   +  L+ KK + F +G +AG
Sbjct:   176 EEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAG 235

Query:   238 NREEEINELISK 249
                EEINELI K
Sbjct:   236 YCGEEINELIKK 247

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0005840 "ribosome" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=ISO

GO:0042273 "ribosomal large subunit biogenesis" evidence=ISO

UNIPROTKB|Q58DT1 RPL7 "60S ribosomal protein L7" [Bos taurus (taxid:9913)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 104/250 (41%), Positives = 157/250 (62%)

Query:     2 AEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFI 61
             AEE  ++  A V ET+ KKRK+   L + R  +    K+      K  +    ++ + + 
Sbjct:     4 AEEKKKKVPA-VPETLKKKRKNFAELKIKRLRK----KFAQKMLRKARRKLIYEKAKHYH 58

Query:    62 KQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIF 121
             K++R      IRM +  +++       + KL F+IRI+G + +  + +K+L  LRLR+IF
Sbjct:    59 KEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIF 118

Query:   122 SGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQT 181
             +G FV+     + +L+ VEPY+ +GYPNL +V ELIYK+GY  ++++RI LTDN +I ++
Sbjct:   119 NGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARS 178

Query:   182 LGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREE 241
             LGKYGIIC+ED++HEI  VG  FKE  NFL P  L+ P GG+  K   F +GG+AGNRE+
Sbjct:   179 LGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNRED 238

Query:   242 EINELISKMN 251
             +IN LI +MN
Sbjct:   239 QINRLIRRMN 248

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAI5	RL71_ARATH	No assigned EC number	0.5873	0.9800	0.9959	yes	no
P05737	RL7A_YEAST	No assigned EC number	0.3976	0.9601	0.9877	yes	no
Q5R9R4	RL7_PONAB	No assigned EC number	0.4142	0.9362	0.9514	yes	no
Q6C603	RL7_YARLI	No assigned EC number	0.4567	0.9362	0.94	yes	no
P05426	RL7_RAT	No assigned EC number	0.4058	0.9362	0.9038	yes	no
Q6FSN6	RL7_CANGA	No assigned EC number	0.4162	0.8167	0.8401	yes	no
Q12213	RL7B_YEAST	No assigned EC number	0.4041	0.9243	0.9508	yes	no
P11874	RL7_DICDI	No assigned EC number	0.4308	0.9721	0.9918	yes	no
Q58DT1	RL7_BOVIN	No assigned EC number	0.416	0.9760	0.9879	yes	no
Q755A7	RL7_ASHGO	No assigned EC number	0.4306	0.8167	0.8436	yes	no
P18124	RL7_HUMAN	No assigned EC number	0.4032	0.9721	0.9838	yes	no
P17937	RL7A_SCHPO	No assigned EC number	0.4581	0.9760	0.9839	yes	no
P14148	RL7_MOUSE	No assigned EC number	0.4100	0.9362	0.8703	yes	no
Q5ZJ56	RL7_CHICK	No assigned EC number	0.4087	0.9760	0.9959	yes	no
Q6BTA4	RL7_DEBHA	No assigned EC number	0.4117	0.9282	0.9668	yes	no
O01802	RL7_CAEEL	No assigned EC number	0.4537	0.9322	0.9590	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_III0615	hypothetical protein (247 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0071003601	SubName- Full=Putative uncharacterized protein; (181 aa)	•		•	•			•		0.550
	fgenesh4_pg.C_LG_VI001257	SubName- Full=Putative uncharacterized protein; (180 aa)	•		•	•			•		0.551
	estExt_fgenesh4_pg.C_LG_VI1248	SubName- Full=Putative uncharacterized protein; (181 aa)	•		•	•			•		0.550
	estExt_Genewise1_v1.C_LG_XI3222	SubName- Full=Putative uncharacterized protein; (181 aa)	•		•	•			•		0.550
	estExt_fgenesh4_pm.C_400015	hypothetical protein (204 aa)			•	•			•		0.501
	estExt_Genewise1_v1.C_LG_II0017	annotation not avaliable (204 aa)			•	•			•		0.501
	estExt_fgenesh4_kg.C_410006	RecName- Full=Ribosomal protein L15; (204 aa)			•	•			•		0.501
	grail3.0096009401	RecName- Full=Ribosomal protein L15; (205 aa)			•	•			•		0.500
	grail3.0029006102	RecName- Full=Ribosomal protein L15; (205 aa)			•	•			•		0.500
	gw1.13136.3.1	hypothetical protein (60 aa)			•						0.482

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
TIGR01310	235	TIGR01310, L7, 60S ribosomal protein L7, eukaryoti	2e-96
cd01657	159	cd01657, Ribosomal_L7_archeal_euk, Ribosomal prote	3e-76
PRK06049	154	PRK06049, rpl30p, 50S ribosomal protein L30P; Revi	9e-27
TIGR01309	152	TIGR01309, L30P_arch, 50S ribosomal protein L30P,	4e-26
cd00355	53	cd00355, Ribosomal_L30_like, Ribosomal protein L30	1e-11
pfam00327	52	pfam00327, Ribosomal_L30, Ribosomal protein L30p/L	2e-11
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	4e-10
COG1841	55	COG1841, RpmD, Ribosomal protein L30/L7E [Translat	1e-09

>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic

 Score =  281 bits (722), Expect = 2e-96
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 6/239 (2%)

Query: 15  ETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRM 74
           E +LKKRK+ + LA+    Q +  K    + NKK +    KR E F+K++R  E ++IR+
Sbjct: 1   ELLLKKRKARQELAVQVAKQAKAKK----KANKKKRKIYFKRAESFVKEYRKAEREIIRL 56

Query: 75  KQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLE 134
           K+  K+  K     + KL+F+IRI+G + +  + +K+L  LRL+++ +GVFV+ T   LE
Sbjct: 57  KRLAKKPGKFYVPAEHKLVFVIRIKGINGIPPKPRKVLRLLRLKQVNNGVFVKVTKATLE 116

Query: 135 VLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIV 194
           +L+ VEPYV YGYPNL +V+ELIYK+G+A ++ QR+PLTDN IIEQ LGKYGIICIED++
Sbjct: 117 MLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNTIIEQHLGKYGIICIEDLI 176

Query: 195 HEIANVGPHFKEVVNFLGPLTLNKPEGGLL--GKKQPFKDGGEAGNREEEINELISKMN 251
           HEI  VGPHFKEV NFL P  L+ P  G     K + F +GG+ GNRE+ INELI KMN
Sbjct: 177 HEIYTVGPHFKEVNNFLWPFKLSSPVKGWGKRKKVKHFIEGGDFGNREDFINELIKKMN 235

This model describes the eukaryotic 60S (cytosolic) ribosomal protein L7 and paralogs that may or may not also be L7. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues). Length = 235

>gnl|CDD|100099 cd01657, Ribosomal_L7_archeal_euk, Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome

 Score =  227 bits (581), Expect = 3e-76
 Identities = 86/160 (53%), Positives = 112/160 (70%), Gaps = 1/160 (0%)

Query: 92  LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLV 151
           L  ++RI+G   +  + +K L  LRLRRI + VFV+ T   + +L+KVEPYVT+G PNL 
Sbjct: 1   LYAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLE 60

Query: 152 NVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFL 211
            ++ELIYK+G    + QRIPLTDN ++E+TL K GIICIED+ HEI   GP+FKEV NFL
Sbjct: 61  TLRELIYKRGRLKGNGQRIPLTDNYLVEKTL-KKGIICIEDLAHEIYTGGPNFKEVNNFL 119

Query: 212 GPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251
            P  L+ P GG  GKK+ F +GGE G R E+INELI +M 
Sbjct: 120 PPFRLHPPRGGFKGKKRHFSEGGELGYRGEDINELIRRMI 159

The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes. Length = 159

>gnl|CDD|235683 PRK06049, rpl30p, 50S ribosomal protein L30P; Reviewed

 Score =  101 bits (253), Expect = 9e-27
 Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 91  KLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNL 150
           ++  +IRI+G  ++ R     L  LRL R+   V V  T     +LQKV+ YVT+G  + 
Sbjct: 1   EMYAVIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDA 60

Query: 151 VNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNF 210
             + EL+ K+G    ++    LTD  + E T    G   IE++   +       K++   
Sbjct: 61  DTLAELLRKRGRLEGNK---KLTDEYVKENT----GYDSIEELAEALVEGEIKLKDLPGL 113

Query: 211 LGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 250
                L+ P GG  G K+PFK+GGE G R E+INEL+ +M
Sbjct: 114 KPVFRLHPPRGGFGGIKRPFKEGGELGYRGEKINELLRRM 153

Length = 154

>gnl|CDD|130376 TIGR01309, L30P_arch, 50S ribosomal protein L30P, archaeal

 Score = 99.0 bits (247), Expect = 4e-26
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 9/157 (5%)

Query: 95  IIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVK 154
           +IRI+GT D+ R     L  LRL R+   V    T   L +LQKV+ YVT+G  +   ++
Sbjct: 3   VIRIRGTVDVPRDIADTLEMLRLHRVNHCVLYPETPTYLGMLQKVKDYVTWGEIDEDTLE 62

Query: 155 ELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPL 214
            LI K+G          +TD  + E T    G   ++++   +        E        
Sbjct: 63  LLIRKRGRLVGGD---KVTDEYVKEVT----GYESVDELAKALVEGEIKLSE-AGLKPVF 114

Query: 215 TLNKPEGGL-LGKKQPFKDGGEAGNREEEINELISKM 250
            L+ P  G   G K P++DGGE G R E+INEL+ +M
Sbjct: 115 RLHPPRKGFKGGIKTPYRDGGELGYRGEKINELLRRM 151

This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 152

>gnl|CDD|100098 cd00355, Ribosomal_L30_like, Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa

 Score = 57.8 bits (141), Expect = 1e-11
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 94  FIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYG 146
            + R++       + +K L  L LR+I   VFV+ T  +  +L+KV+  VT G
Sbjct: 1   KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG 53

L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea. Length = 53

>gnl|CDD|201157 pfam00327, Ribosomal_L30, Ribosomal protein L30p/L7e

 Score = 57.1 bits (139), Expect = 2e-11
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 92  LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYV 143
           LL I RI+       + KK L  L LR+I   VFV+ T  +  +L+KV+  V
Sbjct: 1   LLKITRIRSIIGRPPKQKKTLKLLGLRKINQTVFVKDTPAIRGMLRKVKHLV 52

This family includes prokaryotic L30 and eukaryotic L7. Length = 52

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 16 TVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMK 75
          ++LKKRK  E L   R  +    K       KK +    KR E+++K++R  E D IR+K
Sbjct: 1  SLLKKRKRNEKLRAKRAKKRAAKK----AARKKKRKLIFKRAEKYVKEYRAAERDEIRLK 56

Query: 76 QRGKRS 81
          +  K+ 
Sbjct: 57 REAKKK 62

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|224754 COG1841, RpmD, Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]

 Score = 52.5 bits (127), Expect = 1e-09
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 93  LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY 147
           L +  I+       + +K L  L LR+I   V V  T  +  +L KV+  VT G 
Sbjct: 1   LKVTLIRSPIGRPPKIRKTLRLLGLRKINHTVIVEDTPAVRGMLNKVKHLVTVGE 55

Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
TIGR01310	235	L7 60S ribosomal protein L7, eukaryotic. Members o	100.0
KOG3184	235	consensus 60S ribosomal protein L7 [Translation, r	100.0
cd01657	159	Ribosomal_L7_archeal_euk Ribosomal protein L7, whi	100.0
PRK06049	154	rpl30p 50S ribosomal protein L30P; Reviewed	100.0
TIGR01309	152	L30P_arch 50S ribosomal protein L30P, archaeal. Th	100.0
COG1841	55	RpmD Ribosomal protein L30/L7E [Translation, ribos	99.78
cd00355	53	Ribosomal_L30_like Ribosomal protein L30, which is	99.74
PF00327	52	Ribosomal_L30: Ribosomal protein L30p/L7e; InterPr	99.68
PF08079	71	Ribosomal_L30_N: Ribosomal L30 N-terminal domain;	99.68
PRK05611	59	rpmD 50S ribosomal protein L30; Reviewed	99.64
TIGR01308	55	rpmD_bact ribosomal protein L30, bacterial/organel	99.58
cd01658	54	Ribosomal_L30 Ribosomal protein L30, which is foun	99.55
KOG4799	182	consensus Mitochondrial ribosomal protein L30 [Tra	97.15

>TIGR01310 L7 60S ribosomal protein L7, eukaryotic

Probab=100.00  E-value=2.8e-85  Score=582.56  Aligned_cols=233  Identities=52%  Similarity=0.874  Sum_probs=227.4

Q ss_pred             hHHHHhhhhHHHHHHHHHHHHHhcccCcccccccccchhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCCCceEE
Q 025560           15 ETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLF   94 (251)
Q Consensus        15 E~~lkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~krae~~v~ey~~~e~~~~r~kr~ak~~~~~~~~~e~kl~~   94 (251)
                      |++|||||++++++.++++++.+.+    ++++.+++.+|+|||+|+++|+++++|.+|++|+++++|++|+|+|++++|
T Consensus         1 e~llkkrk~~~~~~~~~~~~~~~~k----~~~~~~k~~~fkr~e~~~~~y~~~e~d~~r~~r~~k~~~~~~~~~e~kl~f   76 (235)
T TIGR01310         1 ELLLKKRKARQELAVVRAKQAKAKK----KRNKKKKKHYFKRAESFVHEYRKAERERIRLKRLAKKPGKFYVPAEHKLLF   76 (235)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCeEEE
Confidence            7899999999999999999888877    777788899999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceecCCC
Q 025560           95 IIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTD  174 (251)
Q Consensus        95 ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~ltd  174 (251)
                      ||||||++++||++++||++|||+++||||||++|+++.+||++|+|||||||||++||++||||||+++++++++||||
T Consensus        77 VIRirG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~~~ML~~VepYVt~G~p~l~tvr~Li~KRG~~k~~~~~v~Ltd  156 (235)
T TIGR01310        77 VIRIKGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLQMLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTD  156 (235)
T ss_pred             EEEeCCCCCCCHHHHHHHHHhCCCccceEEEEECCHHHHHHHHhcCCeEEEecCCHHHHHHHHHHhCceeeCCCeeeCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCC--cccccccCCCCCCChHHHHHHHHhhC
Q 025560          175 NNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLG--KKQPFKDGGEAGNREEEINELISKMN  251 (251)
Q Consensus       175 n~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~--~k~~~~~gG~~G~r~~~In~Li~rM~  251 (251)
                      |+|||++||++||+|+|||||||+|+|+||+++++|||||+||||+|||+.  +++||.+||++||||++||+||++|+
T Consensus       157 n~iiE~~lg~~gi~ciEDliheI~t~g~~fk~i~~~L~PFrL~~Pr~G~~~~~~~~~~~egG~~G~r~~~IN~Li~rM~  235 (235)
T TIGR01310       157 NTIIEQHLGKYGIICIEDLIHEIYTVGPHFKEVNNFLWPFKLSSPVKGFGKRKKVKHFKEGGDFGNREDAINELIRKMN  235 (235)
T ss_pred             hHHHHHhhccCCcccHHHHHHHHHhCCCCHHHHhcCccCccCCCCcccccccCcccCcccCCCCCccHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999974  88999999999999999999999997

Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).

>KOG3184 consensus 60S ribosomal protein L7 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.3e-67  Score=463.60  Aligned_cols=234  Identities=44%  Similarity=0.760  Sum_probs=229.3

Q ss_pred             chhHHHHhhhhHHHHHHHHHHHHHhcccCcccccccccchhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCCCce
Q 025560           13 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKL   92 (251)
Q Consensus        13 vpE~~lkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~krae~~v~ey~~~e~~~~r~kr~ak~~~~~~~~~e~kl   92 (251)
                      +||++|| ||+++++++++++++.+.+    ..++.++...++++++|+++|++++++.++++|.+++.+++|+|+++++
T Consensus         1 vPE~llk-rk~~~~~~~~~~~~~~~~k----~~~k~~~~~~~~~~e~~~~~~~~~~r~~i~~~r~~~~~~~~~~~~e~~l   75 (235)
T KOG3184|consen    1 VPENLLK-RKAQAELATQALRKLLAKK----EIRKKKRKLFLKKAKHYHKEYRQKYRTEIRMARIARKAGNFYVPAEPKL   75 (235)
T ss_pred             Cchhhhh-hhhHHHHHHHHHHHHHHHH----HHHhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHhccccCcCcccccc
Confidence            6999999 9999999999999999988    7778889999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhccc-ccCCceec
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYA-TVDRQRIP  171 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~-k~~~~~~~  171 (251)
                      +||||++|+++++|+++++|++|+|.+||+||||++|+++.+||++|+||||||+||+++|++||||||++ ++++++++
T Consensus        76 ~fvvri~gin~v~pk~~k~l~lLrL~~If~g~fVKlnk~~~~mLriVepYVa~G~pnlksv~elI~krG~~k~~~~k~i~  155 (235)
T KOG3184|consen   76 AFVIRIRGVNGVEPKSRKVLQLLRLKQIFNGTFVKLNKATVNMLRIVEPYIAWGYPNLKSVSELIYKRGYGKKIEKKRIP  155 (235)
T ss_pred             ceeeecccccccCchHHHHHHHHHhhccccceeEEechhhhhhHhhcccceeeccCcHHHHHHHHhhcccccccCCceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 49999999


Q ss_pred             CCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCChHHHHHHHHhhC
Q 025560          172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN  251 (251)
Q Consensus       172 ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~~~In~Li~rM~  251 (251)
                      ||||.++++++|++|++|+||++|+|+++|++|+++++|||||+|++|.+||..+..||.|||++||||+.||+|+++|+
T Consensus       156 ltdn~ii~~~lgk~~~i~~edl~hei~~vg~~fk~~n~fL~pf~l~~~~~~~~~k~~h~~e~g~~g~~~~~in~L~~~~~  235 (235)
T KOG3184|consen  156 LTDNFLIERKLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPVAGHKTKFGHFKEGGTAGNRGEHINDLIRQLN  235 (235)
T ss_pred             cccchHHHHhcCCcceeechhhhccccccchhHHHHhhccCceeccCcccchhhhccccccCCCCCchHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999988999999999999999999999996

>cd01657 Ribosomal_L7_archeal_euk Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome

Probab=100.00  E-value=3.4e-63  Score=419.45  Aligned_cols=159  Identities=54%  Similarity=0.887  Sum_probs=156.9

Q ss_pred             eEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceec
Q 025560           92 LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIP  171 (251)
Q Consensus        92 l~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~  171 (251)
                      ++||||+||.++++|++++||++|||+++|+|||+++||+++|||++|+|||+||+||++||++||+|||+++++++++|
T Consensus         1 l~~Virirg~~g~~~~~r~tL~~LgL~k~~~~v~~~~t~~~~gmL~kV~~~V~~ge~~~~tv~~Li~kRG~~~~~~~~~~   80 (159)
T cd01657           1 LYAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLETLRELIYKRGRLKGNGQRIP   80 (159)
T ss_pred             CEEEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhhhheEeccCcHHHHHHHHHHhCeecCCCeeee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCChHHHHHHHHhhC
Q 025560          172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN  251 (251)
Q Consensus       172 ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~~~In~Li~rM~  251 (251)
                      ||||+++|++| ++||+|+|||||||+++|++|+++++|+|||+||||++||++++++|++||++||||++||+||++|+
T Consensus        81 ltdn~iie~~l-~~gi~ciedlv~~i~~~~~~f~~~~~~l~pF~L~~P~~g~~~~~~~~~~gG~~G~r~~~In~Li~~m~  159 (159)
T cd01657          81 LTDNYLVEKTL-KKGIICIEDLAHEIYTGGPNFKEVNNFLPPFRLHPPRGGFKGKKRHFSEGGELGYRGEDINELIRRMI  159 (159)
T ss_pred             CChHHHHHHHc-ccCcccHHHHHHHHHhCccCHHHhhccCCCeECCCcccchhccccccccCCCCCccHHHHHHHHHHhC
Confidence            99999999999 99999999999999999999999999999999999999999888999999999999999999999997

The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.

>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed

Probab=100.00  E-value=1.5e-61  Score=407.03  Aligned_cols=154  Identities=34%  Similarity=0.538  Sum_probs=147.4

Q ss_pred             ceEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCcee
Q 025560           91 KLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRI  170 (251)
Q Consensus        91 kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~  170 (251)
                      .++||+|+||.++++|++++||++|||+++|+|||+++||+++|||++|+|||+|||||++||++||||||++ .|+ + 
T Consensus         1 ~~~~ViriRg~ig~~~~~r~tL~~LgL~ki~~~V~v~~tp~~~GML~kV~~~V~~ge~~~~tv~~Li~kRG~~-~g~-~-   77 (154)
T PRK06049          1 EMYAVIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDADTLAELLRKRGRL-EGN-K-   77 (154)
T ss_pred             CcEEEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhhceeEEeeCchHHHHHHHHHhCcc-cCC-C-
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999994 444 4 


Q ss_pred             cCCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCChHHHHHHHHhh
Q 025560          171 PLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM  250 (251)
Q Consensus       171 ~ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~~~In~Li~rM  250 (251)
                      |||||+|+| +   +||+|+|||||||+++|++|+++++|+|||+||||+|||++++++|.+||++||||++||+||++|
T Consensus        78 ~ltd~~i~e-~---~g~~~iedl~~~i~~~~~~fk~~~~~~~~FrL~pPr~G~~~~k~~~~~gG~~G~r~~~In~Li~rM  153 (154)
T PRK06049         78 KLTDEYVKE-N---TGYDSIEELAEALVEGEIKLKDLPGLKPVFRLHPPRGGFGGIKRPFKEGGELGYRGEKINELLRRM  153 (154)
T ss_pred             CCCHHHHHH-h---cCCccHHHHHHHHHhCCCCHHHhhcccCceecCCcchhhhhcccccccCCCCCccHHHHHHHHHHh
Confidence            999999977 3   499999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 025560          251 N  251 (251)
Q Consensus       251 ~  251 (251)
                      +
T Consensus       154 ~  154 (154)
T PRK06049        154 R  154 (154)
T ss_pred             C
Confidence            6

>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal

Probab=100.00  E-value=6.9e-60  Score=396.20  Aligned_cols=151  Identities=33%  Similarity=0.503  Sum_probs=143.9

Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceecC
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPL  172 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~l  172 (251)
                      ++|+||||.++++|++++||++|||+++|+|||+++||+++|||++|+|||+|||||++||++||||||++. |+  .||
T Consensus         1 ~~ViriRg~ig~~~~~r~tL~~LrL~ri~~~V~v~~tp~~~gML~kV~~yV~~ge~~~~tv~~Li~kRG~~~-g~--~~l   77 (152)
T TIGR01309         1 LAVIRIRGTVDVPRDIADTLEMLRLHRVNHCVLYPETPTYLGMLQKVKDYVTWGEIDEDTLELLIRKRGRLV-GG--DKV   77 (152)
T ss_pred             CeEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhHhheeEecCCHHHHHHHHHHhcccc-CC--CcC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999975 55  399


Q ss_pred             CChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcC-CcccccccCCCCCCChHHHHHHHHhhC
Q 025560          173 TDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLL-GKKQPFKDGGEAGNREEEINELISKMN  251 (251)
Q Consensus       173 tdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~-~~k~~~~~gG~~G~r~~~In~Li~rM~  251 (251)
                      |||+ ||++|   ||+|+|||||||+++|++|++++ |+|||+||||++||+ +++++|.+||++||||++||+||++|+
T Consensus        78 td~~-i~e~~---g~~~iedl~~~i~~~~~~f~~~~-~~~~FrL~pPr~G~~~~~k~~~~~gG~~G~r~~~In~Li~rMi  152 (152)
T TIGR01309        78 TDEY-VKEVT---GYESVDELAKALVEGEIKLSEAG-LKPVFRLHPPRKGFKGGIKTPYRDGGELGYRGEKINELLRRMR  152 (152)
T ss_pred             CHHH-HHHHc---CCccHHHHHHHHHcCCCCccccC-ccCceeCCCCCcccccccccccccCCCCcccHHHHHHHHHHhC
Confidence            9986 57777   79999999999999999999996 999999999999998 789999999999999999999999996

This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.

>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=2.7e-19  Score=126.66  Aligned_cols=55  Identities=31%  Similarity=0.321  Sum_probs=53.7

Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEec
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY  147 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~  147 (251)
                      ++|+|+||.+|++|++++||++|||+++|++|++++||+++|||++|+|||+||+
T Consensus         1 ~~V~~iRs~ig~~~~~r~tl~~LgL~kin~~v~~~dtp~irGMi~kV~~lV~v~e   55 (55)
T COG1841           1 LKVTLIRSPIGRPPKIRKTLRLLGLRKINHTVIVEDTPAVRGMLNKVKHLVTVGE   55 (55)
T ss_pred             CeEEEEeccCCCChHHHHHHHHhCCCccCCEEEEcCCHHHHHHHHHHHhheEecC
Confidence            4799999999999999999999999999999999999999999999999999996

>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa

Probab=99.74  E-value=4.5e-18  Score=119.46  Aligned_cols=53  Identities=32%  Similarity=0.437  Sum_probs=52.1

Q ss_pred             EEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEe
Q 025560           94 FIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYG  146 (251)
Q Consensus        94 ~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G  146 (251)
                      +|+|+||.++++|++++||++|||+++|++||+++||+++|||++|+|||+||
T Consensus         1 ~V~~irs~ig~~~~~~~tl~~LgL~k~~~~v~~~~tp~~~gml~kV~~lV~~~   53 (53)
T cd00355           1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG   53 (53)
T ss_pred             CEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhccceEEEC
Confidence            58999999999999999999999999999999999999999999999999998

L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.

>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.68  E-value=1e-16  Score=112.11  Aligned_cols=52  Identities=37%  Similarity=0.542  Sum_probs=49.0

Q ss_pred             eEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeE
Q 025560           92 LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYV  143 (251)
Q Consensus        92 l~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV  143 (251)
                      ++||+||||.++++|++++||++|||+++|++||+++||+++|||++|+|||
T Consensus         1 ~l~V~~irs~~g~~~~~~~tl~~LgL~k~~~~v~~~~t~~~~gml~kV~~lV   52 (52)
T PF00327_consen    1 LLFVTRIRSPIGAPPKVRKTLKALGLRKINQAVFVKNTPSIRGMLKKVKHLV   52 (52)
T ss_dssp             EEEEEESS-STTSSHHHHHHHHHTT-SSTTEEEEEESSHHHHHHHHHTGCGE
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEECCHHHHHHHHHHHhhC
Confidence            5899999999999999999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L30 is one of the proteins from the large ribosomal subunit. L30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups bacteria and archaea L30, yeast mitochondrial L33, and Drosophila melanogaster, Dictyostelium discoideum (Slime mold), fungal and mammalian L7 ribosomal proteins. L30 from bacteria are small proteins of about 60 residues, those from archaea are proteins of about 150 residues, and eukaryotic L7 are proteins of about 250 to 270 residues. This entry represents a domain with a ferredoxin-like fold, with a core structure consisting of core: beta-alpha-beta-alpha-beta. This domain is found in prokaryotic ribosomal protein L30 (short-chain member of the family), as well as in archaeal L30 (L30a) (long-chain member of the family), the later containing an additional C-terminal (sub)domain).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3DF2_Y 3DF4_Y 3O5H_G 3O58_G 1S1I_F 3IZS_e 1M1K_X 1M90_X 1QVG_V 1YIT_W ....

>PF08079 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; InterPro: IPR012988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.68  E-value=1.4e-17  Score=123.75  Aligned_cols=71  Identities=34%  Similarity=0.513  Sum_probs=63.1

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHhcccCcccccccccchhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCCC
Q 025560           16 TVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKS   90 (251)
Q Consensus        16 ~~lkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~krae~~v~ey~~~e~~~~r~kr~ak~~~~~~~~~e~   90 (251)
                      ||||||+++++++...+++..+.+    +..+.+++.+|+|||+|++||+++++|+++|+|+|++.|+||||+||
T Consensus         1 s~LKKrK~~~~~~~~~~~~~~~~k----~~~~~~r~~~~kRAekY~kEYr~~erd~Irl~R~Ak~~G~fyvpaEp   71 (71)
T PF08079_consen    1 SLLKKRKRNEKLKAKRAKKAAARK----KKRKKKRKEIFKRAEKYVKEYRQKERDEIRLKREAKKAGNFYVPAEP   71 (71)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-SEE----
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccCccCCCCC
Confidence            589999999999999999988888    77888999999999999999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This presumed domain is found at the N terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [].; PDB: 3IZR_e 3O5H_G 3O58_G 3IZS_e 4A1A_V 4A17_V 4A1E_V 4A1C_V.

>PRK05611 rpmD 50S ribosomal protein L30; Reviewed

Probab=99.64  E-value=5.4e-16  Score=111.41  Aligned_cols=55  Identities=24%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEec
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY  147 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~  147 (251)
                      ++|+++||.+|.+|++++||++|||+++|++|++++||+++|||++|+|||+|.+
T Consensus         4 ~~I~~vRs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~~rGmi~kV~~lV~vee   58 (59)
T PRK05611          4 LKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVEE   58 (59)
T ss_pred             EEEEEeecCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHhhEEEEe
Confidence            8999999999999999999999999999999999999999999999999999986

>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle

Probab=99.58  E-value=4.1e-15  Score=105.46  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=52.2

Q ss_pred             EEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEec
Q 025560           94 FIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY  147 (251)
Q Consensus        94 ~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~  147 (251)
                      .|+++||.+|.+|++++||++|||+++|++|++++||+++|||++|+|||.+.+
T Consensus         2 kItlvrs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~irGMi~kV~~lV~vee   55 (55)
T TIGR01308         2 KVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVLEDNPAIRGMVNKVKHLVKVEE   55 (55)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHheEEEeC
Confidence            589999999999999999999999999999999999999999999999999864

This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.

>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa

Probab=99.55  E-value=8.7e-15  Score=103.34  Aligned_cols=53  Identities=21%  Similarity=0.266  Sum_probs=51.3

Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEE
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTY  145 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~  145 (251)
                      +.|+++||.+|.+|++++||++|||+++|++|++++||+++|||++|+|||.+
T Consensus         1 ~~i~~iRs~ig~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~Gml~kV~~lV~v   53 (54)
T cd01658           1 LKITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKV   53 (54)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHHhheEEe
Confidence            36899999999999999999999999999999999999999999999999987

L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.

>KOG4799 consensus Mitochondrial ribosomal protein L30 [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.0012  Score=56.35  Aligned_cols=73  Identities=19%  Similarity=0.193  Sum_probs=65.9

Q ss_pred             CCC-CceEEEEeecCCCCCChHHHHHHHHhCCCCcCc-EEEEeCChhHHHHHHhccCeEE-------EecCChHHHHHHH
Q 025560           87 KPK-SKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFS-GVFVRATDGMLEVLQKVEPYVT-------YGYPNLVNVKELI  157 (251)
Q Consensus        87 ~~e-~kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~-~vfv~~n~~~~~mL~~V~pyV~-------~G~p~~~tvr~Li  157 (251)
                      |.+ +||..|.|||+..+.|..-.+++++|||....+ -..+++.|++-.-|.+|+|+|.       +|+|..+-|+..+
T Consensus        53 P~~p~KL~~v~rik~t~~~PyWek~iik~lGld~k~t~~qV~kNip~vNakLwkIKHLI~~~pv~fp~gePte~di~~t~  132 (182)
T KOG4799|consen   53 PQNPHKLHIVTRIKSTRRRPYWEKDIIKMLGLDKKHTRPQVHKNIPSVNAKLWKIKHLIRLRPVEFPGGEPTEDDISSTS  132 (182)
T ss_pred             CCCccceEEEEEeccccCCcchHHHHHHHhCcccccCCceEeecccchhhHHHHhhheeEEEeeccCCCCCchhhhhhhh
Confidence            444 589999999999999999999999999999998 7888999999999999999985       6999999999887


Q ss_pred             HH
Q 025560          158 YK  159 (251)
Q Consensus       158 ~K  159 (251)
                      .|
T Consensus       133 Lk  134 (182)
T KOG4799|consen  133 LK  134 (182)
T ss_pred             hc
Confidence            64

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
3izr_e	244	Localization Of The Large Subunit Ribosomal Protein		3e-59
4a17_V	239	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-50
2zkr_w	270	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-49
3izs_e	244	Localization Of The Large Subunit Ribosomal Protein		9e-48
1s1i_F	162	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-43
3jyw_F	213	Structure Of The 60s Proteins For Eukaryotic Riboso		2e-43
3zf7_w	257	High-resolution Cryo-electron Microscopy Structure		1e-35
3j21_Y	155	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-15
1ffk_T	154	Crystal Structure Of The Large Ribosomal Subunit Fr		1e-04

>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 244

Iteration: 1
 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/251 (45%), Positives = 165/251 (65%), Gaps = 7/251 (2%)
Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
           MA EAA+     V E V+ KR+  E  A  +K ++   K    +  K        R EQ+
Sbjct: 1   MASEAAK---VAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVI----YARAEQY 53
Query: 61  IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
             ++  Q+ +L+++K+  +        P++K LF++RI+G + MH +TKKIL  LRLR+I
Sbjct: 54  AGEYEAQDKELVQLKREARMKGGFYVSPEAKPLFVVRIRGINAMHPKTKKILQLLRLRQI 113
Query: 121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
           F+GVF++     + +L++VEPYVTYGYPNL +V+ELIYK+GY  +++QRIPL +N +IE+
Sbjct: 114 FNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKVIEE 173
Query: 181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNRE 240
            LGK+ IICIED+VHEI  VGPHFKE  NFL P  L  P GGL  K+  + +GG+AGNRE
Sbjct: 174 GLGKHNIICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRE 233
Query: 241 EEINELISKMN 251
             IN+L+ +MN
Sbjct: 234 NYINQLVRRMN 244

>pdb|4A17|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 239

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 147/239 (61%), Gaps = 4/239 (1%)
Query: 12  FVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDL 71
           FV E V KK    E L   RKA+ E  K    Q  K+ K E I + +++  ++   E  +
Sbjct: 4   FVPENVQKKLARDEKL---RKAKAEQRKASSAQM-KQRKAEWISKAQKYAAEYEAAEKKI 59
Query: 72  IRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDG 131
           +  K++ +++       ++K+ F IRI+G + +H   K++L   RLR++ +G F R    
Sbjct: 60  VDEKRKARKTGAFYVPAEAKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKA 119
Query: 132 MLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIE 191
            L ++++V P++T+GYP    + +LIYK+G+A V+ QRIPLTDN I+E++LGK+GI C+E
Sbjct: 120 SLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDNTIVEKSLGKFGITCVE 179
Query: 192 DIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 250
           D++HEI  VGPHFKE  NFL P  L+ P GG   K+  +  GG+ GNRE  IN+L+  M
Sbjct: 180 DLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAM 238

>pdb|2ZKR|WW Chain w, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 270

Iteration: 1
 Score =  191 bits (485), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 152/239 (63%), Gaps = 4/239 (1%)
Query: 13  VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLI 72
           V ET+ KKR++   L + R  +    K+      K  +    ++ + + K++R      I
Sbjct: 36  VPETLKKKRRNFAELKVKRLRK----KFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEI 91
Query: 73  RMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGM 132
           RM +  +++       + KL F+IRI+G + +  + +K+L  LRLR+IF+G FV+     
Sbjct: 92  RMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKAS 151
Query: 133 LEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIED 192
           + +L+ VEPY+ +GYPNL +V ELIYK+GY  ++++RI LTDN++I ++LGK+GIIC+ED
Sbjct: 152 INMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMED 211
Query: 193 IVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251
           ++HEI  VG  FKE  NFL P  L+ P GG+  K   F +GG+AGNRE++IN LI +MN
Sbjct: 212 LIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270

>pdb|3IZS|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 244

Iteration: 1
 Score =  186 bits (472), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 101/254 (39%), Positives = 154/254 (60%), Gaps = 13/254 (5%)
Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
           MA E    P     E+ LKK K+ +  A     Q+   +      NK+ +   ++R   +
Sbjct: 1   MAAEKILTP-----ESQLKKSKAQQKTA----EQVAAERAARKAANKEKRAIILERNAAY 51
Query: 61  IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
            K++   E ++I+ K+  K +     + + KL+F++RI+G + +  + +K+L  LRL RI
Sbjct: 52  QKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRI 111
Query: 121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
            SG FV+ T   LE+L+ +EPYV YGYP+   +++L+YK+G+  +++QR+PL+DN IIE 
Sbjct: 112 NSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEA 171
Query: 181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFK---DGGEAG 237
            LGKYGI+ I+D++HEI  VGPHFK+  NFL P  L+ P GG  G  + FK    GG  G
Sbjct: 172 NLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGG-WGVPRKFKHFIQGGSFG 230
Query: 238 NREEEINELISKMN 251
           NREE IN+L+  MN
Sbjct: 231 NREEFINKLVKSMN 244

>pdb|1S1I|F Chain F, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 162

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 115/163 (70%), Gaps = 4/163 (2%)
Query: 92  LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLV 151
           L+F++RI+G + +  + +K+L  LRL RI SG FV+ T   LE+L+ +EPYV YGYP+  
Sbjct: 1   LVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYS 60
Query: 152 NVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFL 211
            +++L+YK+G+  +++QR+PL+DN IIE  LGKYGI+ I+D++HEI  VGPHFK+  NFL
Sbjct: 61  TIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFL 120
Query: 212 GPLTLNKPEGGLLGKKQPFK---DGGEAGNREEEINELISKMN 251
            P  L+ P GG  G  + FK    GG  GNREE IN+L+  MN
Sbjct: 121 WPFKLSNPSGG-WGVPRKFKHFIQGGSFGNREEFINKLVKSMN 162

>pdb|3JYW|F Chain F, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 213

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 115/163 (70%), Gaps = 4/163 (2%)
Query: 92  LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLV 151
           L+F++RI+G + +  + +K+L  LRL RI SG FV+ T   LE+L+ +EPYV YGYP+  
Sbjct: 52  LVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYS 111
Query: 152 NVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFL 211
            +++L+YK+G+  +++QR+PL+DN IIE  LGKYGI+ I+D++HEI  VGPHFK+  NFL
Sbjct: 112 TIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFL 171
Query: 212 GPLTLNKPEGGLLGKKQPFK---DGGEAGNREEEINELISKMN 251
            P  L+ P GG  G  + FK    GG  GNREE IN+L+  MN
Sbjct: 172 WPFKLSNPSGG-WGVPRKFKHFIQGGSFGNREEFINKLVKSMN 213

>pdb|3ZF7|WW Chain w, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 257

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 118/192 (61%)
Query: 59  QFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLR 118
           ++ +++R  E  L  +++  ++      + K K+  + RI+G + +  + +KIL  LRLR
Sbjct: 65  KYSREYRSTEKKLAGLRRNARQHGNYYLEAKPKVAVVTRIRGIAKVPPKQRKILQLLRLR 124
Query: 119 RIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNII 178
           +IF+ VFVR    M  +L+ VEPY+ YGYP+L  V+ ++YK+G+  ++ QR+ +TDN +I
Sbjct: 125 QIFNTVFVRLNKPMENMLRAVEPYIAYGYPSLSTVRAMVYKRGHLKINGQRVKITDNQMI 184
Query: 179 EQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGN 238
           +       I+C EDIV++I   G HF+ V N L P  L  P GG+  K++ F +GG+ GN
Sbjct: 185 KDKYHNDDIVCAEDIVNQIYACGKHFRTVTNGLWPFKLAPPAGGMRQKRRHFVEGGDYGN 244
Query: 239 REEEINELISKM 250
           R+  IN  +++M
Sbjct: 245 RDTLINRFLARM 256

>pdb|3J21|Y Chain Y, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 155

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Query: 93  LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVN 152
           L +IRI+G  ++ R  +  L  LRL R+   V V  T   L +LQK + Y+T+G  N   
Sbjct: 4   LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAET 63
Query: 153 VKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLG 212
           + +LI K+G    ++   P+TD  + E+ LG    + IE+   ++ N     K++ N   
Sbjct: 64  LAKLIRKRGRLIGNK---PVTDEYVKEK-LG----MTIEEFAQKVVNGEMSLKDLPNLKP 115
Query: 213 PLTLNKPEGGLLG-KKQPFKDGGEAGNREEEINELISKM 250
              L+ P GG  G KK+ FK+GG  G R E+INELI +M
Sbjct: 116 VFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERM 154

>pdb|1FFK|T Chain T, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 154

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 95  IIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVK 154
           +++++G  +MH   +  L  L +  +     V  TD    ++ KV  +V +G P+   ++
Sbjct: 4   LVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLE 63
Query: 155 ELIYKK-----GYATVDRQRIP-LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVV 208
            ++  +     G A VD + +   TD + I      + ++  E  + E            
Sbjct: 64  TVLATRAEPLEGDADVDDEWVAEHTDYDDISGL--AFALLSEETTLREQG---------- 111
Query: 209 NFLGP-LTLNKPEGGLLGKKQPFKDGGEAGNREEE-INELISKM 250
             L P L L+ P GG  G K P K+GG+ G  + E I++L+  M
Sbjct: 112 --LSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
3iz5_e	244	60S ribosomal protein L7 (L30P); eukaryotic riboso	1e-68
4a17_V	239	RPL7, 60S ribosomal protein L7; eukaryotic ribosom	4e-68
3izc_e	244	60S ribosomal protein RPL7 (L30P); eukaryotic ribo	2e-67
2zkr_w	270	60S ribosomal protein L7; protein-RNA complex, 60S	1e-66
3jyw_F	213	60S ribosomal protein L7(A); eukaryotic ribosome,	3e-64
1vq8_W	154	50S ribosomal protein L30P; ribosome 50S, protein-	8e-48

>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V Length = 239

 Score =  209 bits (533), Expect = 4e-68
 Identities = 91/240 (37%), Positives = 144/240 (60%), Gaps = 4/240 (1%)

Query: 11  AFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELD 70
            FV E V KK    E L   +  Q +        + K+ K E I + +++  ++   E  
Sbjct: 3   KFVPENVQKKLARDEKLRKAKAEQRKASS----AQMKQRKAEWISKAQKYAAEYEAAEKK 58

Query: 71  LIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATD 130
           ++  K++ +++       ++K+ F IRI+G + +H   K++L   RLR++ +G F R   
Sbjct: 59  IVDEKRKARKTGAFYVPAEAKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNK 118

Query: 131 GMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICI 190
             L ++++V P++T+GYP    + +LIYK+G+A V+ QRIPLTDN I+E++LGK+GI C+
Sbjct: 119 ASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDNTIVEKSLGKFGITCV 178

Query: 191 EDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 250
           ED++HEI  VGPHFKE  NFL P  L+ P GG   K+  +  GG+ GNRE  IN+L+  M
Sbjct: 179 EDLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAM 238

>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 270

 Score =  207 bits (526), Expect = 1e-66
 Identities = 98/251 (39%), Positives = 155/251 (61%), Gaps = 4/251 (1%)

Query: 1   MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQF 60
              +  ++ +  V ET+ KKR++   L + R  +    K       K  +    ++ + +
Sbjct: 24  AGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALK----TLRKARRKLIYEKAKHY 79

Query: 61  IKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRI 120
            K++R      IRM +  +++       + KL F+IRI+G + +  + +K+L  LRLR+I
Sbjct: 80  HKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQI 139

Query: 121 FSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQ 180
           F+G FV+     + +L+ VEPY+ +GYPNL +V ELIYK+GY  ++++RI LTDN++I +
Sbjct: 140 FNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIAR 199

Query: 181 TLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNRE 240
           +LGK+GIIC+ED++HEI  VG  FKE  NFL P  L+ P GG+  K   F +GG+AGNRE
Sbjct: 200 SLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNRE 259

Query: 241 EEINELISKMN 251
           ++IN LI +MN
Sbjct: 260 DQINRLIRRMN 270

>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F Length = 213

 Score =  198 bits (505), Expect = 3e-64
 Identities = 79/209 (37%), Positives = 117/209 (55%), Gaps = 2/209 (0%)

Query: 45  KNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDM 104
               +                               +        + L+F++RI+G + +
Sbjct: 5   AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGLVFVVRIKGINKI 64

Query: 105 HRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYAT 164
             + +K+L  LRL RI SG FV+ T   LE+L+ +EPYV YGYP+   +++L+YK+G+  
Sbjct: 65  PPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGK 124

Query: 165 VDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLL 224
           +++QR+PL+DN IIE  LGKYGI+ I+D++HEI  VGPHFK+  NFL P  L+ P GG  
Sbjct: 125 INKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWG 184

Query: 225 GKK--QPFKDGGEAGNREEEINELISKMN 251
             +  + F  GG  GNREE IN+L+  MN
Sbjct: 185 VPRKFKHFIQGGSFGNREEFINKLVKSMN 213

>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ... Length = 154

 Score =  154 bits (391), Expect = 8e-48
 Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 8/160 (5%)

Query: 92  LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLV 151
           +  +++++G  +MH   +  L  L +  +     V  TD    ++ KV  +V +G P+  
Sbjct: 1   MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQE 60

Query: 152 NVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFL 211
            ++ ++  +           + D  + E          I  +   + +     +E     
Sbjct: 61  TLETVLATRAEPLEGDA--DVDDEWVAE----HTDYDDISGLAFALLSEETTLRE-QGLS 113

Query: 212 GPLTLNKPEGGLLGKKQPFKDGGEAGN-REEEINELISKM 250
             L L+ P GG  G K P K+GG+ G    E I++L+  M
Sbjct: 114 PTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
4a17_V	239	RPL7, 60S ribosomal protein L7; eukaryotic ribosom	100.0
3iz5_e	244	60S ribosomal protein L7 (L30P); eukaryotic riboso	100.0
3izc_e	244	60S ribosomal protein RPL7 (L30P); eukaryotic ribo	100.0
2zkr_w	270	60S ribosomal protein L7; protein-RNA complex, 60S	100.0
1vq8_W	154	50S ribosomal protein L30P; ribosome 50S, protein-	100.0
3j21_Y	155	50S ribosomal protein L30P; archaea, archaeal, KIN	100.0
3jyw_F	213	60S ribosomal protein L7(A); eukaryotic ribosome,	100.0
1bxy_A	60	Protein (ribosomal protein L30); X-RAY crystallogr	99.67
2zjr_W	55	50S ribosomal protein L30; ribosome, large ribosom	99.6
3r8s_Z	58	50S ribosomal protein L30; protein biosynthesis, R	99.59

>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V

Probab=100.00  E-value=3.7e-88  Score=601.60  Aligned_cols=236  Identities=39%  Similarity=0.739  Sum_probs=230.8

Q ss_pred             cchhHHHHhhhhHHHHHHHHHHHHHhcccCcccccccccchhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCCCc
Q 025560           12 FVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSK   91 (251)
Q Consensus        12 ~vpE~~lkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~krae~~v~ey~~~e~~~~r~kr~ak~~~~~~~~~e~k   91 (251)
                      +|||++|||||+++++++++++++.+.+    +.++++++.+|+|||+|++||+++++|++|++|+|+++|+||+|+||+
T Consensus         4 ~vpe~~lKkrk~~~~~~~~~~~~~~~~k----~~~~~~r~~~~~rae~y~~ey~~~~r~~ir~~r~a~~~~~~~~~~e~k   79 (239)
T 4a17_V            4 FVPENVQKKLARDEKLRKAKAEQRKASS----AQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAK   79 (239)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCC
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCce
Confidence            5999999999999999999999999888    778889999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceec
Q 025560           92 LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIP  171 (251)
Q Consensus        92 l~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~  171 (251)
                      |+|||||||+++++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||++++|++++|
T Consensus        80 l~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~  159 (239)
T 4a17_V           80 VAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIP  159 (239)
T ss_dssp             EEEEEECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTEEEE
T ss_pred             EEEEEEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCChHHHHHHHHhhC
Q 025560          172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN  251 (251)
Q Consensus       172 ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~~~In~Li~rM~  251 (251)
                      ||||++||++||++||+|+|||||||+|+|++|+++++|||||+||||+|||++++.||.+||++|||||.||+||++|+
T Consensus       160 Ltdn~~ie~~lGk~giiciEDLiheI~t~g~~fk~~~~fl~pFkL~~PrgG~k~~~~~f~egG~~G~r~~~IN~Li~rM~  239 (239)
T 4a17_V          160 LTDNTIVEKSLGKFGITCVEDLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML  239 (239)
T ss_dssp             CCCSHHHHHHHGGGTCCSHHHHHHHHHHTCSCCHHHHHHBCCEECCCCSSCCSCTTSBGGGTCCBEECTTTHHHHHHHHC
T ss_pred             CChhHHHHHhCCcCCcccHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccCCCccccHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999889999999999999999999999997

>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=6.7e-87  Score=601.87  Aligned_cols=243  Identities=40%  Similarity=0.722  Sum_probs=156.8

Q ss_pred             hccCCCccchhHHHHhhhhHHHHHHHHHHHHHhcccCcccccccccchhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 025560            5 AAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKV   84 (251)
Q Consensus         5 ~~~~~l~~vpE~~lkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~krae~~v~ey~~~e~~~~r~kr~ak~~~~~   84 (251)
                      .+++++|.|||++|||||+++++++++++++.+.+    ++++++++.+|+|||+|+++|+++++|.+|++|+|+++|+|
T Consensus        28 ~~~~~~~~vpE~llKkrk~~~~~~~~~~~~~~~~k----~~~~~~r~~~~~rae~y~~eyr~~~r~~ir~~r~akk~g~~  103 (270)
T 2zkr_w           28 TLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALK----TLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNF  103 (270)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            45567889999999999999999999998888877    77888899999999999999999999999999999999999


Q ss_pred             cCCCCCceEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccc
Q 025560           85 IGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYAT  164 (251)
Q Consensus        85 ~~~~e~kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k  164 (251)
                      |+|+||+++||+||||++|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++
T Consensus       104 yvp~e~kl~~V~rirs~ig~~~~~rktL~~LgLrki~~~V~v~dtpa~rgML~kV~~~V~vgepnlksv~eLi~KRG~~k  183 (270)
T 2zkr_w          104 YVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGK  183 (270)
T ss_dssp             -------CEEEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCCCCCTTTHHHHHHHCCCCS
T ss_pred             cccCCCceeEEEEeCCcCCCCHHHHHHHHHcCCCcCCCeEEEeCCHHHHHHHHhcccceeEecCCHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceecCCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCChHHHH
Q 025560          165 VDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEIN  244 (251)
Q Consensus       165 ~~~~~~~ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~~~In  244 (251)
                      +|+++||||||+|||++||++||+|+||||||||++|+||+++++|||||+||||+|||+++++||++||++||||++||
T Consensus       184 i~~k~i~LtdN~iIee~LG~~giiciEDliheI~t~g~~fk~~~~fl~pFkL~~P~~G~k~k~~~~~egG~~G~r~~~IN  263 (270)
T 2zkr_w          184 INKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN  263 (270)
T ss_dssp             SSSSCSCSSHHHHSSSSSCSSCCCSHHHHHHHTSSCSSCCSSSSSCCSCEECCCCSSCCSCSSCC-CCSCSCC-CCTTTT
T ss_pred             cCCeeeeCCchHHHHhhccCcCcchHHHHHHHHHhccccHHHHhCcCCCeeCCCccccccccccccccCCcccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             HHHHhhC
Q 025560          245 ELISKMN  251 (251)
Q Consensus       245 ~Li~rM~  251 (251)
                      +||++|+
T Consensus       264 ~Li~rM~  270 (270)
T 2zkr_w          264 RLIRRMN  270 (270)
T ss_dssp             TTTTTCC
T ss_pred             HHHHHhC
Confidence            9999997

>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...

Probab=100.00  E-value=5e-63  Score=415.08  Aligned_cols=153  Identities=22%  Similarity=0.404  Sum_probs=149.9

Q ss_pred             eEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceec
Q 025560           92 LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIP  171 (251)
Q Consensus        92 l~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~  171 (251)
                      |+||+||||.++++|++++||++|||+++|++||+++||+++|||++|+|||+||+||++||++||||||++++|+  +|
T Consensus         1 l~fV~rirs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~KRG~~~~~~--~~   78 (154)
T 1vq8_W            1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGD--AD   78 (154)
T ss_dssp             CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHHHHCCBSSSC--CC
T ss_pred             CEEEEEeCCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHHhhCccccCC--cc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999998988  89


Q ss_pred             CCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCCh-HHHHHHHHhh
Q 025560          172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNRE-EEINELISKM  250 (251)
Q Consensus       172 ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~-~~In~Li~rM  250 (251)
                      ||||++||    ++||+|+|||||||+++|++|+++ +|||||+||||++||++++++|++||++|||| ++||+||++|
T Consensus        79 ltdn~iie----~~gi~ciedlihei~~~g~~f~~~-~fl~pF~L~~P~~G~~~~~~~~~egG~~G~r~~~~In~Li~rM  153 (154)
T 1vq8_W           79 VDDEWVAE----HTDYDDISGLAFALLSEETTLREQ-GLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM  153 (154)
T ss_dssp             CSHHHHHH----HSSSSSHHHHHHHHHTTSCCTGGG-TBCSCEECCCCTTCCSCSSSBGGGTCSBEECCHHHHHHHHHHT
T ss_pred             CCchhhcc----ccccccHHHHHHHHHhCCcchhhc-CCcCceecCCccccccccccccccCCccccccHHHHHHHHHHh
Confidence            99999998    579999999999999999999999 99999999999999999999999999999999 9999999999


Q ss_pred             C
Q 025560          251 N  251 (251)
Q Consensus       251 ~  251 (251)
                      +
T Consensus       154 ~  154 (154)
T 1vq8_W          154 R  154 (154)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.4e-61  Score=406.83  Aligned_cols=151  Identities=37%  Similarity=0.576  Sum_probs=145.1

Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceecC
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPL  172 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~l  172 (251)
                      ++|+||||+++++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||++  +++ +||
T Consensus         4 ~~V~~irs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~KRG~~--~~~-~~l   80 (155)
T 3j21_Y            4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRL--IGN-KPV   80 (155)
T ss_dssp             EEEEECSCSTTCCHHHHHHHHHTTCCSTTEEEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHCCS--SSS-CCC
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHHHhccc--cCC-CcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999993  333 599


Q ss_pred             CChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcC-CcccccccCCCCCCChHHHHHHHHhhC
Q 025560          173 TDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLL-GKKQPFKDGGEAGNREEEINELISKMN  251 (251)
Q Consensus       173 tdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~-~~k~~~~~gG~~G~r~~~In~Li~rM~  251 (251)
                      |||+|+|    ++|| |+||||||||++|++|+++++|||||+||||+|||+ ++++||.+||++||||++||+||++|+
T Consensus        81 tdn~l~e----k~gi-ciEdli~eI~~~g~~fk~~~~fl~pFkL~~P~~G~k~~~~~~~~egG~~G~r~~~In~Li~rM~  155 (155)
T 3j21_Y           81 TDEYVKE----KLGM-TIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML  155 (155)
T ss_dssp             CHHHHHH----HSSS-CHHHHHHHHHHTSSCTTTSCSSCSEEECCCCTTCSSSCSSSBTTTTSSBEECCTTHHHHHHHTC
T ss_pred             CHHHHHH----HhCC-CHHHHHHHHHhCCcCHHHhhCcCCceecCCccchhhcccccccccCCCCcCcHHHHHHHHHHcC
Confidence            9999998    5799 999999999999999999999999999999999998 588999999999999999999999996

>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F

Probab=100.00  E-value=8.4e-63  Score=433.09  Aligned_cols=168  Identities=48%  Similarity=0.896  Sum_probs=164.7

Q ss_pred             ccCCCCCceEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhccc
Q 025560           84 VIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYA  163 (251)
Q Consensus        84 ~~~~~e~kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~  163 (251)
                      -.+|.+++++||+|++|+++++|+++++|++|+|+++|++||+++|+++.+||++|+|||+|||||++||++||||||++
T Consensus        44 ~Svp~e~kL~fVIRIrGin~ispk~rkvLqLLRL~rInsgvfvk~~k~t~~mL~~VepyV~~G~p~l~tv~eLi~KRg~~  123 (213)
T 3jyw_F           44 AAAAAAAGLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFG  123 (213)
T ss_dssp             HTCSCCCCCCCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEECCCSSTTTSHHHHSCCC
T ss_pred             hhCcccCccceeeeecCccCCCCchHHHHHHcccceecceEEecCCHHHHHHHhhccchheeecCCHHHHHHHHHhcCcc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceecCCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcC--CcccccccCCCCCCChH
Q 025560          164 TVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLL--GKKQPFKDGGEAGNREE  241 (251)
Q Consensus       164 k~~~~~~~ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~--~~k~~~~~gG~~G~r~~  241 (251)
                      +++++++|||||++||++||++||+|+|||+|||+++|++|+++++|||||+||||+|||+  ++++||++||++|||||
T Consensus       124 k~~~~~i~ltdn~iie~~lg~~gi~ciedli~ei~~~g~~f~~~~~fl~pF~L~~P~~G~~~~~~~~~~~egG~~G~r~~  203 (213)
T 3jyw_F          124 KINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREE  203 (213)
T ss_dssp             SSSCCSSCSSSHHHHSSSSCCSCCCCHHHHHHHHTTTCSSCTTTTTSCSSBCCCCCTTCCSSSSSSCCTTTSCSSSEESS
T ss_pred             cCCCCeecCCcchHHHHhccCCCceeHHHHHHHHHhCCcCHHHhhCCCCCEECCCCCCCccCCCeecccccCCCCCCcHH
Confidence            9999999999999999999999999999999999999999999999999999999999998  78899999999999999


Q ss_pred             HHHHHHHhhC
Q 025560          242 EINELISKMN  251 (251)
Q Consensus       242 ~In~Li~rM~  251 (251)
                      .||+||++||
T Consensus       204 ~In~Li~~m~  213 (213)
T 3jyw_F          204 FINKLVKSMN  213 (213)
T ss_dssp             THHHHHTTCC
T ss_pred             HHHHHHHHhC
Confidence            9999999997

>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...

Probab=99.67  E-value=1.3e-16  Score=113.88  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=55.7

Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCC
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPN  149 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~  149 (251)
                      +.|+++||.+|.++++++||++|||+++|++|++++||+++|||++|+|||+|++++
T Consensus         4 ~kItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~veev~   60 (60)
T 1bxy_A            4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE   60 (60)
T ss_dssp             EEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred             EEEEEeecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHhHHHHhHheEEEEecC
Confidence            789999999999999999999999999999999999999999999999999999975

>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W*

Probab=99.60  E-value=5.9e-16  Score=108.75  Aligned_cols=55  Identities=16%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEec
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY  147 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~  147 (251)
                      +.|+++||.+|.++++++||++|||+++|++|+++|||+++|||++|+|||+|++
T Consensus         1 ~kIt~vrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~vee   55 (55)
T 2zjr_W            1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE   55 (55)
T ss_dssp             CEEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred             CEEEEEecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHHHHHHhHhhEEEeC
Confidence            3589999999999999999999999999999999999999999999999999985

>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...

Probab=99.59  E-value=1.9e-15  Score=107.18  Aligned_cols=57  Identities=23%  Similarity=0.163  Sum_probs=54.7

Q ss_pred             ceEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEec
Q 025560           91 KLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY  147 (251)
Q Consensus        91 kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~  147 (251)
                      +-+.|+++||.+|.++++++||++|||+++|++|++++||+++|||++|+|||+|.+
T Consensus         2 ~~lkItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hLV~vee   58 (58)
T 3r8s_Z            2 KTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE   58 (58)
T ss_dssp             CEEEEEECSCSTTCCHHHHHHHHHHTCCSTTCCCEEECCHHHHHHHHHTGGGEEEEC
T ss_pred             CeEEEEEeecCCCCCHHHHHHHHHcCCCCCCCEEEecCCHHHHHHHHHHHheEEEeC
Confidence            358899999999999999999999999999999999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1vqow1	154	d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon H	2e-47

>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 154

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  152 bits (386), Expect = 2e-47
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 92  LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLV 151
           +  +++++G  +MH   +  L  L +  +     V  TD    ++ KV  +V +G P+  
Sbjct: 1   MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQE 60

Query: 152 NVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFL 211
            ++ ++  +           + D  +            I  +   + +            
Sbjct: 61  TLETVLATRAEPLEG--DADVDDEWV----AEHTDYDDISGLAFALLS-EETTLREQGLS 113

Query: 212 GPLTLNKPEGGLLGKKQPFKDGGEAGN-REEEINELISKM 250
             L L+ P GG  G K P K+GG+ G    E I++L+  M
Sbjct: 114 PTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1vqow1	154	Archaeal L30 (L30a) {Archaeon Haloarcula marismort	100.0
d2gycx1	56	Prokaryotic ribosomal protein L30 {Escherichia col	99.55
d1bxya_	60	Prokaryotic ribosomal protein L30 {Thermus thermop	99.54
d2zjrw1	55	Prokaryotic ribosomal protein L30 {Deinococcus rad	99.36

>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=7.1e-59  Score=388.02  Aligned_cols=153  Identities=21%  Similarity=0.369  Sum_probs=144.8

Q ss_pred             eEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceec
Q 025560           92 LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIP  171 (251)
Q Consensus        92 l~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~  171 (251)
                      |++||||||.++++|++++||++|||+++|+|||+++||+++|||++|+|||||||||++||++||||||+++.|+  .|
T Consensus         1 m~aViRIRg~ig~~~~~r~tL~~LrL~k~~~~V~~~~tp~~~gML~kVk~yVt~G~~~~~tv~~Li~kRG~~~~g~--~~   78 (154)
T d1vqow1           1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGD--AD   78 (154)
T ss_dssp             CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSTTSEEEECCCHHHHHHHHHHHCCBSSSC--CC
T ss_pred             CeeEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHhhccceeEecCCHHHHHHHHHHhcccccCC--Cc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999988887  48


Q ss_pred             CCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCC-CChHHHHHHHHhh
Q 025560          172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAG-NREEEINELISKM  250 (251)
Q Consensus       172 ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G-~r~~~In~Li~rM  250 (251)
                      ||||++.|    ++||+|+|||||+|++ |++|.++++|+|||+||||+|||++++++|.+||++| ||||.||+||++|
T Consensus        79 lt~e~i~~----~~g~~~iedl~~~i~~-g~~~~~~~~~~~pFrL~pP~~g~~~~k~~~~~gG~~Gnyrge~IN~Li~rM  153 (154)
T d1vqow1          79 VDDEWVAE----HTDYDDISGLAFALLS-EETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM  153 (154)
T ss_dssp             CCHHHHHH----HSSSSSHHHHHHHHHT-TSCCTTTTTBCSEEECCCCTTCCSCSSSBGGGTSSBEECCHHHHHHHHHHT
T ss_pred             CCHhHhcc----ccCcccHHHHHHHHHc-CCceeeccCCcCCeeCCCcccchhhcccccccCCccCCccHHHHHHHHHHc
Confidence            99998866    3489999999999998 6777778999999999999999999999999999999 6999999999999


Q ss_pred             C
Q 025560          251 N  251 (251)
Q Consensus       251 ~  251 (251)
                      -
T Consensus       154 ~  154 (154)
T d1vqow1         154 R  154 (154)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Prokaryotic ribosomal protein L30
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.7e-15  Score=104.04  Aligned_cols=55  Identities=22%  Similarity=0.157  Sum_probs=53.3

Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEec
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY  147 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~  147 (251)
                      +-|+++||.+|.++++++||++|||+++|++|++++||+++|||++|+|||.|+|
T Consensus         2 ikItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kVkhLV~veE   56 (56)
T d2gycx1           2 IKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE   56 (56)
T ss_dssp             EEEEECSCSSSCCTTHHHHHHHHTCCSTTCEEEECCCTTHHHHHHHTTTTEECCC
T ss_pred             EEEEEecCCCCCCHHHHHHHHHhCCCCCCCEEEeCCCHHHHHHHHhhhheeEEeC
Confidence            5789999999999999999999999999999999999999999999999999986

>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Prokaryotic ribosomal protein L30
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=8e-15  Score=102.97  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=55.0

Q ss_pred             EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCC
Q 025560           93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPN  149 (251)
Q Consensus        93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~  149 (251)
                      +.|.++||.+|.++++++||+.|||+++|+.|++++||+++|||++|+|||.|++.+
T Consensus         4 lkIt~vrS~iG~~~~~k~tl~~LGL~k~~~~v~~~~tp~i~Gmi~kVkhLV~Veev~   60 (60)
T d1bxya_           4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE   60 (60)
T ss_dssp             EEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred             EEEEEecCCCCCCHHHHHHHHHcCCCCCCCEEEeCCCHHHHHHHHhhhheeEEEEcC
Confidence            689999999999999999999999999999999999999999999999999999863

>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Prokaryotic ribosomal protein L30
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.36  E-value=2.3e-13  Score=93.81  Aligned_cols=54  Identities=17%  Similarity=0.091  Sum_probs=51.4

Q ss_pred             EEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEec
Q 025560           94 FIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY  147 (251)
Q Consensus        94 ~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~  147 (251)
                      -|.++||.+|.++++++||+.|||+++|+.|+++|||+++|||++|.|+|.+.+
T Consensus         2 kItlvrS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~VeE   55 (55)
T d2zjrw1           2 KIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE   55 (55)
T ss_dssp             EEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred             eEEEEcCCCCCCHHHHHHHHHhCCCCCCCEEEeCCCHHHHHHHHhhhheEEEeC
Confidence            588999999999999999999999999999999999999999999999997653