Citrus Sinensis ID: 025591

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLSAASKPSTAAA
Secondary Structure (PSIPRED)
ccEEEEcccccEEEEEEEccHHHHHHHHHcccccEEccccccccccccEEEEcccccccccccccccccccEEEEEEEcccccccccccccccEEEEccccccccccccEEEEEEEEccccccccccccccccccccccccHHHcccccccccccEEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccEEEEEEccHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEccEEEEEEcccHHHEEEEEEEccccccccccccccccccccHHHHHHHHHHccccccccHHEEEEEEcccccccccccccccHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mkfnianpttgcqkkleidDDQKLRAFFDKRisqevsgdalgeeFKGYVFKImggcdkqgfpmkqgvltpgRVRLLlhrgtpcfrgygrrdgerrrksvrgcivspdlsVLNLVIVKkgehdlpgltdtekprmrgpkrASKIRKLFnlskeddvRKYVNTYRRTFttktgkkvskapkiqrlvtplTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSrlsaaskpstaaa
Flexible Loop (DISEMBL)
mkfnianpttgcqkkleiDDDQKLRAFFDKrisqevsgdalgEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLlhrgtpcfrgygrrdgerrrksvrgcivspdlsvLNLVIVKkgehdlpgltdtekprmrgpkraskirklfnlskeddvrkyvntyrrtfttktgkkvskapkiqrlvtpltlqrkraRIAEKKQRIAKAKAEAAEYQKLLATrlkeqrerrseslakkrsrlsaaskpstaaa
Low Complexity Region (SEG)
MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFrgygrrdgerrrksvrgCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLqrkrariaekkqriakakaeaaEYQKLLATRLKEQRERRSESLAKKRSRLSAASKPSTAAA
Disordered region (IsUnstruct)
***********************LRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKG***************************FNL***DDVRKYVNTYRRTFTTK************RLVTPL***************************************************************
Disordered Region (DISOPRED)
MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGR*DGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDL*****************SKIRKLFNLSKEDDVRKYVN******************KIQRLVTPLTLQRKRA******************YQKL**********************************
Disordered Region (DISEMBL)
MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTE*********ASKIRKLFNLSKEDDVRKYVNTYRRTFT*********APKIQRLVTPLTLQRKRA**************EAAEYQKLLATRLK****************************
Disordered Region (DISPRO)
MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGY***DGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRE************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTxxxxxxxxxxxxxxxxxxxxxxxxxxxxLATRLKEQRERRSESLAKKRSRLSAASKPSTAAA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q9M3V8	251	40S ribosomal protein S6	N/A	no	1.0	0.996	0.916	1e-132
P51430	249	40S ribosomal protein S6-	yes	no	0.996	1.0	0.907	1e-129
O48549	250	40S ribosomal protein S6-	yes	no	0.996	0.996	0.9	1e-122
P29345	199	40S ribosomal protein S6	N/A	no	0.796	1.0	0.857	2e-91
P62755	249	40S ribosomal protein S6	yes	no	0.98	0.983	0.649	9e-84
P62754	249	40S ribosomal protein S6	yes	no	0.98	0.983	0.649	9e-84
Q4R4K6	249	40S ribosomal protein S6	N/A	no	0.98	0.983	0.649	9e-84
P62753	249	40S ribosomal protein S6	yes	no	0.98	0.983	0.649	9e-84
Q5E995	249	40S ribosomal protein S6	yes	no	0.98	0.983	0.649	2e-83
P47838	249	40S ribosomal protein S6	yes	no	0.98	0.983	0.633	4e-82

>sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1

 Score =  470 bits (1209), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/250 (91%), Positives = 241/250 (96%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEVSGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVSPDLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
           +DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKI
Sbjct: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARIAEKK+R+AKAK+EAAEYQKLLA+RLKEQR+RRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLS 240

Query: 241 AASKPSTAAA 250
           AA+  + + +
Sbjct: 241 AAAAKTASVS 250

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.
Asparagus officinalis (taxid: 4686)

>sp|P51430|RS62_ARATH 40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3

 Score =  459 bits (1181), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/249 (90%), Positives = 237/249 (95%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFN+ANPTTGCQKKLEIDDDQKLRAFFDKR+SQEVSGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLLHRGTPCFRG+GRR GERRRKSVRGCIVSPDLSVLNLVIVKKG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKI
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARIA+KK+RIAKA ++AA+YQKLLA+RLKEQR+RRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240

Query: 241 AASKPSTAA 249
           +A     AA
Sbjct: 241 SAPAKPVAA 249

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Arabidopsis thaliana (taxid: 3702)

>sp|O48549|RS61_ARATH 40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2

 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/250 (90%), Positives = 239/250 (95%), Gaps = 1/250 (0%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFN+ANPTTGCQKKLEIDDDQKLRAF+DKRISQEVSGDALGEEFKGYVFKI GGCDKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLLHRGTPCFRG+GRR GERRRKSVRGCIVSPDLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
           +DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRL- 239
           QRLVTPLTLQRKRARIA+KK++IAKA ++AA+YQKLLA+RLKEQR+RRSESLAKKRSRL 
Sbjct: 181 QRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240

Query: 240 SAASKPSTAA 249
           SAA+KPS  A
Sbjct: 241 SAAAKPSVTA 250

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Arabidopsis thaliana (taxid: 3702)

>sp|P29345|RS6_TOBAC 40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2

 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/204 (85%), Positives = 186/204 (91%), Gaps = 5/204 (2%)

Query: 46  KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVS 105
           KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCFRGYGRR+GERRRKSVRGCIVS
Sbjct: 1   KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVS 60

Query: 106 PDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRT 165
           PDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    
Sbjct: 61  PDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNTT-AE 117

Query: 166 FTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQR 225
           FTTK   K SKAPKIQRLVTPLTLQRKRARIA+KK+RIAKAK+EAAEYQKLLA+RLKEQR
Sbjct: 118 FTTKW--KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQR 175

Query: 226 ERRSESLAKKRSRLSAASKPSTAA 249
           E+RSESLAKKRSRLSAASKPS AA
Sbjct: 176 EKRSESLAKKRSRLSAASKPSIAA 199

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Nicotiana tabacum (taxid: 4097)

>sp|P62755|RS6_RAT 40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1

 Score =  310 bits (793), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 163/251 (64%), Positives = 194/251 (77%), Gaps = 6/251 (2%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYR--PRRTGERKRKSVRGCIVDANLSVLNLVIVKKGE 118

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKI
Sbjct: 119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKI 176

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKR--SR 238
           QRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +AK+R  S 
Sbjct: 177 QRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSS 236

Query: 239 LSAASKPSTAA 249
           L A++  S ++
Sbjct: 237 LRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Rattus norvegicus (taxid: 10116)

>sp|P62754|RS6_MOUSE 40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1

 Score =  310 bits (793), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 163/251 (64%), Positives = 194/251 (77%), Gaps = 6/251 (2%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYR--PRRTGERKRKSVRGCIVDANLSVLNLVIVKKGE 118

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKI
Sbjct: 119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKI 176

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKR--SR 238
           QRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +AK+R  S 
Sbjct: 177 QRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSS 236

Query: 239 LSAASKPSTAA 249
           L A++  S ++
Sbjct: 237 LRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Mus musculus (taxid: 10090)

>sp|Q4R4K6|RS6_MACFA 40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1

 Score =  310 bits (793), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 163/251 (64%), Positives = 194/251 (77%), Gaps = 6/251 (2%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYR--PRRTGERKRKSVRGCIVDANLSVLNLVIVKKGE 118

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKI
Sbjct: 119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKI 176

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKR--SR 238
           QRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +AK+R  S 
Sbjct: 177 QRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSS 236

Query: 239 LSAASKPSTAA 249
           L A++  S ++
Sbjct: 237 LRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Macaca fascicularis (taxid: 9541)

>sp|P62753|RS6_HUMAN 40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1

 Score =  310 bits (793), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 163/251 (64%), Positives = 194/251 (77%), Gaps = 6/251 (2%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYR--PRRTGERKRKSVRGCIVDANLSVLNLVIVKKGE 118

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKI
Sbjct: 119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKI 176

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKR--SR 238
           QRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +AK+R  S 
Sbjct: 177 QRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSS 236

Query: 239 LSAASKPSTAA 249
           L A++  S ++
Sbjct: 237 LRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Homo sapiens (taxid: 9606)

>sp|Q5E995|RS6_BOVIN 40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1

 Score =  309 bits (791), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/251 (64%), Positives = 193/251 (76%), Gaps = 6/251 (2%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYR--PRRTGERKRKSVRGCIVDANLSVLNLVIVKKGE 118

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+       K  +KAPKI
Sbjct: 119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKDGKKPRTKAPKI 176

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKR--SR 238
           QRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +AK+R  S 
Sbjct: 177 QRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSS 236

Query: 239 LSAASKPSTAA 249
           L A++  S ++
Sbjct: 237 LRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Bos taurus (taxid: 9913)

>sp|P47838|RS6_CHICK 40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1

 Score =  304 bits (779), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 159/251 (63%), Positives = 193/251 (76%), Gaps = 6/251 (2%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK NI+ P TGCQK +E+DD++ +R F++KR++ EV+ D+LGEE+KGYV +I GG DKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYR--PRRTGERKRKSVRGCIVDANLSVLNLVIVKKGE 118

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKI
Sbjct: 119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKI 176

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKR--SR 238
           QRLVTP  LQ KR RIA KKQR  K K EAA+Y KLLA R+KE +E+R E +AK+R  S 
Sbjct: 177 QRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRRRLSS 236

Query: 239 LSAASKPSTAA 249
           L A++  S ++
Sbjct: 237 LRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
449431994	250	PREDICTED: 40S ribosomal protein S6-like	1.0	1.0	0.948	1e-134
224060423	249	predicted protein [Populus trichocarpa]	0.996	1.0	0.947	1e-133
82623405	249	unknown [Solanum tuberosum]	0.996	1.0	0.947	1e-133
224093728	249	predicted protein [Populus trichocarpa]	0.996	1.0	0.947	1e-133
224081112	249	predicted protein [Populus trichocarpa]	0.996	1.0	0.947	1e-133
225462854	249	PREDICTED: 40S ribosomal protein S6 isof	0.996	1.0	0.947	1e-133
449469843	249	PREDICTED: 40S ribosomal protein S6-like	0.996	1.0	0.943	1e-133
225459231	249	PREDICTED: 40S ribosomal protein S6 [Vit	0.996	1.0	0.943	1e-132
225468188	249	PREDICTED: 40S ribosomal protein S6 isof	0.996	1.0	0.947	1e-132
224082111	249	predicted protein [Populus trichocarpa]	0.996	1.0	0.943	1e-132

>gi|449431994|ref|XP_004133785.1| PREDICTED: 40S ribosomal protein S6-like [Cucumis sativus] gi|449477988|ref|XP_004155185.1| PREDICTED: 40S ribosomal protein S6-like [Cucumis sativus]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/250 (94%), Positives = 247/250 (98%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEV+GD+LGEEFKGYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVAGDSLGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLNLVIVKKGD 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
           +DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR+FTTK+GKKVSKAPKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRSFTTKSGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKR RIAEKK+RIAKAK+EAAEYQKLLA+RLKEQRERRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRGRIAEKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLS 240

Query: 241 AASKPSTAAA 250
           AASKPS AAA
Sbjct: 241 AASKPSIAAA 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060423|ref|XP_002300192.1| predicted protein [Populus trichocarpa] gi|118482123|gb|ABK92992.1| unknown [Populus trichocarpa] gi|222847450|gb|EEE84997.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/249 (94%), Positives = 245/249 (98%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGD+LGEEF GYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDSLGEEFNGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLNLVIVKKGD 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
           +DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+GKKVSKAPKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARI++KK+RIAKAK+EAAEYQKLLATRLKEQRERRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRARISDKKKRIAKAKSEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240

Query: 241 AASKPSTAA 249
            ASKPS AA
Sbjct: 241 IASKPSVAA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82623405|gb|ABB87117.1| unknown [Solanum tuberosum]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/249 (94%), Positives = 245/249 (98%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLL+RGTPCFRG+GRR+GERRRKSVRGCIVSPDLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTPGRVRLLLYRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
           +DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR FTTKTGK  SKAPKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRNFTTKTGKNASKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARIA+KK+RIAKAK+EAA+YQKLLA+RLKEQRERRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRARIADKKKRIAKAKSEAADYQKLLASRLKEQRERRSESLAKKRSRLS 240

Query: 241 AASKPSTAA 249
           AASKPS AA
Sbjct: 241 AASKPSIAA 249

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093728|ref|XP_002309965.1| predicted protein [Populus trichocarpa] gi|222852868|gb|EEE90415.1| predicted protein [Populus trichocarpa]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/249 (94%), Positives = 242/249 (97%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEF GYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFNGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLNLVIVKKGE 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
           +DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+GKKVSKAPKI
Sbjct: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARI++KK+RI KAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRARISDKKKRITKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240

Query: 241 AASKPSTAA 249
            ASKPS  A
Sbjct: 241 VASKPSVVA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081112|ref|XP_002306298.1| predicted protein [Populus trichocarpa] gi|118485704|gb|ABK94702.1| unknown [Populus trichocarpa] gi|222855747|gb|EEE93294.1| predicted protein [Populus trichocarpa]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/249 (94%), Positives = 244/249 (97%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLL+RGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLNLVIVKKGE 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
           +DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+GKKVSKAPKI
Sbjct: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARI++KK+RI+KAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRARISDKKKRISKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240

Query: 241 AASKPSTAA 249
            ASKPS  A
Sbjct: 241 VASKPSVVA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462854|ref|XP_002271632.1| PREDICTED: 40S ribosomal protein S6 isoform 1 [Vitis vinifera] gi|296087487|emb|CBI34076.3| unnamed protein product [Vitis vinifera]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/249 (94%), Positives = 244/249 (97%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRV LLLHRGTPCFRGYGRR+GERRRK+VRGCIVS DLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTPGRVSLLLHRGTPCFRGYGRRNGERRRKAVRGCIVSQDLSVLNLVIVKKGE 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+GKK SKAPKI
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKCSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARIAEKK+RIAKAK+EAAEYQKLLATRLKEQRERRSESLAK+RSRLS
Sbjct: 181 QRLVTPLTLQRKRARIAEKKKRIAKAKSEAAEYQKLLATRLKEQRERRSESLAKRRSRLS 240

Query: 241 AASKPSTAA 249
           AASKPS AA
Sbjct: 241 AASKPSVAA 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469843|ref|XP_004152628.1| PREDICTED: 40S ribosomal protein S6-like [Cucumis sativus] gi|449523798|ref|XP_004168910.1| PREDICTED: 40S ribosomal protein S6-like [Cucumis sativus]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/249 (94%), Positives = 245/249 (98%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGD+LGEEFKGYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDSLGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLNLVIVKKGD 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
           +DLPGLTD+EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR+FTTK GKKVSKAPKI
Sbjct: 121 NDLPGLTDSEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRSFTTKAGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKR RIAEKK+RIAKAK+EAAEYQKLL++RLKEQRERRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRGRIAEKKKRIAKAKSEAAEYQKLLSSRLKEQRERRSESLAKKRSRLS 240

Query: 241 AASKPSTAA 249
           AASKPS AA
Sbjct: 241 AASKPSIAA 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459231|ref|XP_002285752.1| PREDICTED: 40S ribosomal protein S6 [Vitis vinifera] gi|302141988|emb|CBI19191.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/249 (94%), Positives = 243/249 (97%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEF GYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFNGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRV LLLHRGTPCFRGYGRR+GERRRK+VRGCIVS DLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTPGRVSLLLHRGTPCFRGYGRRNGERRRKAVRGCIVSQDLSVLNLVIVKKGE 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            DLPGLTDTEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR+FTTK+GKK SKAPKI
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRSFTTKSGKKCSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARIAEKK+RIAKAK+EAAEYQKLLATRLKEQRERRSESLAK+RSRLS
Sbjct: 181 QRLVTPLTLQRKRARIAEKKKRIAKAKSEAAEYQKLLATRLKEQRERRSESLAKRRSRLS 240

Query: 241 AASKPSTAA 249
           AASKPS AA
Sbjct: 241 AASKPSVAA 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468188|ref|XP_002273865.1| PREDICTED: 40S ribosomal protein S6 isoform 1 [Vitis vinifera] gi|297741825|emb|CBI33138.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/249 (94%), Positives = 243/249 (97%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRV+LLLHRGTPCFRGYGRR+GERRRK+VRGCIVS DLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTPGRVQLLLHRGTPCFRGYGRRNGERRRKAVRGCIVSQDLSVLNLVIVKKGE 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            +LPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+GKK SKAPKI
Sbjct: 121 GELPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKCSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARIAEKK+RIAKAK+EAAEYQKLLATRLKEQRERRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRARIAEKKKRIAKAKSEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240

Query: 241 AASKPSTAA 249
           AASKPS  A
Sbjct: 241 AASKPSIVA 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082111|ref|XP_002306568.1| predicted protein [Populus trichocarpa] gi|118482542|gb|ABK93192.1| unknown [Populus trichocarpa] gi|222856017|gb|EEE93564.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/249 (94%), Positives = 244/249 (97%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVLTPGRVRLLL+RGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLNLVIVKKGE 120

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
           +DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR+FTTK GKKVSKAPKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRSFTTKAGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTPLTLQRKRARI++KK+RIAKAK+EAAEYQKLLATRLKEQR+RRSESLAKKRSRLS
Sbjct: 181 QRLVTPLTLQRKRARISDKKKRIAKAKSEAAEYQKLLATRLKEQRDRRSESLAKKRSRLS 240

Query: 241 AASKPSTAA 249
            ASKPS  A
Sbjct: 241 IASKPSIVA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
UNIPROTKB|Q8LH97	250	P0594D10.135 "40S ribosomal pr	1.0	1.0	0.78	7.4e-98
TAIR|locus:2142464	249	EMB3010 "embryo defective 3010	0.992	0.995	0.783	9.4e-98
TAIR|locus:2124854	250	RPS6 "ribosomal protein S6" [A	0.996	0.996	0.776	3.2e-97
UNIPROTKB|Q75LR5	245	OSJNBa0017N12.10 "40S ribosoma	0.972	0.991	0.786	2.9e-96
UNIPROTKB|A8J1G8	248	RPS6 "40S ribosomal protein S6	0.992	1.0	0.610	7.7e-71
UNIPROTKB|Q5E995	249	RPS6 "40S ribosomal protein S6	0.964	0.967	0.562	3e-62
UNIPROTKB|E2RP05	249	RPS6 "40S ribosomal protein S6	0.964	0.967	0.562	3e-62
UNIPROTKB|P62753	249	RPS6 "40S ribosomal protein S6	0.964	0.967	0.562	3e-62
RGD|3602	249	Rps6 "ribosomal protein S6" [R	0.964	0.967	0.562	3e-62
UNIPROTKB|J9NRJ1	249	RPS6 "40S ribosomal protein S6	0.964	0.967	0.562	4.8e-62

UNIPROTKB|Q8LH97 P0594D10.135 "40S ribosomal protein S6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
 Identities = 195/250 (78%), Positives = 203/250 (81%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG
Sbjct:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             FPMKQGVLT GRVRLLLHRGTPCF                 CIVS DLSV+NLVIVKKGE
Sbjct:    61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
             +DLPGLTDTEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRRTFTTK GKKVSKAPKI
Sbjct:   121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKI 180

Query:   181 QRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRLS 240
             QRLVTPLTL                      EYQKLLA RLKEQRERRSESLAK+RS+LS
Sbjct:   181 QRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLS 240

Query:   241 AASKPSTAAA 250
             +A+K +   A
Sbjct:   241 SAAKAAATTA 250

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

TAIR|locus:2142464 EMB3010 "embryo defective 3010" [Arabidopsis thaliana (taxid:3702)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 195/249 (78%), Positives = 202/249 (81%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MKFN+ANPTTGCQKKLEIDDDQKLRAFFDKR+SQEVSGDALGEEFKGYVFKIMGGCDKQG
Sbjct:     1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG 
Sbjct:    61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
              DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKI
Sbjct:   121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKI 180

Query:   181 QRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRLS 240
             QRLVTPLTL                      +YQKLLA+RLKEQR+RRSESLAKKRSRLS
Sbjct:   181 QRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240

Query:   241 AA-SKPSTA 248
             +A +KP  A
Sbjct:   241 SAPAKPVAA 249

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2124854 RPS6 "ribosomal protein S6" [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 194/250 (77%), Positives = 202/250 (80%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MKFN+ANPTTGCQKKLEIDDDQKLRAF+DKRISQEVSGDALGEEFKGYVFKI GGCDKQG
Sbjct:     1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE
Sbjct:    61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
             +DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKI
Sbjct:   121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKI 180

Query:   181 QRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRLS 240
             QRLVTPLTL                      +YQKLLA+RLKEQR+RRSESLAKKRSRLS
Sbjct:   181 QRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240

Query:   241 -AASKPSTAA 249
              AA+KPS  A
Sbjct:   241 SAAAKPSVTA 250

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0040007 "growth" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|Q75LR5 OSJNBa0017N12.10 "40S ribosomal protein S6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 191/243 (78%), Positives = 200/243 (82%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEVSGDALGEEFKGYVFKIMGGCDKQG
Sbjct:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             FPMKQGVLT GRVRLLLHRGTPCF                 CIVS DLSV+NLVIVKKG+
Sbjct:    61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
             +DLPGLTDTEKPRMRGPKRASKIRKLFNL+K+DDVRKYVNTYRRTFTTK GKKVSKAPKI
Sbjct:   121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKI 180

Query:   181 QRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRLS 240
             QRLVTPLTL                      EYQKLLA RLKEQRERRSESLAK+RS+LS
Sbjct:   181 QRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLS 240

Query:   241 AAS 243
             AA+
Sbjct:   241 AAT 243

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|A8J1G8 RPS6 "40S ribosomal protein S6" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 152/249 (61%), Positives = 167/249 (67%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MK NIA P TGCQKKLE+DD+ KLRAF+D+R++ EV G+ LGEEFKGYV KI GG DKQG
Sbjct:     1 MKLNIAYPATGCQKKLEVDDEAKLRAFYDRRVAAEVDGEVLGEEFKGYVLKIAGGQDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             F MKQGVLT  RVRLL+  G   F                 CIVSPDL+VLNLVIVKKGE
Sbjct:    61 FAMKQGVLTNARVRLLMTPGDQGFRGYGRRKGERRRKSVRGCIVSPDLAVLNLVIVKKGE 120

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
              +LPGLTD EKPR+RGPKRASKIRK+FNL K DDVRKYV  Y R  T K GKK  K PKI
Sbjct:   121 QELPGLTDEEKPRIRGPKRASKIRKMFNLGKVDDVRKYVTIYSRERTDKNGKKHRKCPKI 180

Query:   181 QRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRLS 240
             QRLVTP  L                      EY KLL  RLKEQRERRSESLAKKR+ + 
Sbjct:   181 QRLVTPAALQRKRARKSLKKRQQEKNKTDAAEYHKLLMQRLKEQRERRSESLAKKRA-MR 239

Query:   241 AASKPSTAA 249
              AS+ S  A
Sbjct:   240 VASQASKEA 248

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|Q5E995 RPS6 "40S ribosomal protein S6" [Bos taurus (taxid:9913)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 140/249 (56%), Positives = 168/249 (67%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct:     1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             FPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE
Sbjct:    61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGE 118

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPK 179
              D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    K GKK  +KAPK
Sbjct:   119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLN-KDGKKPRTKAPK 175

Query:   180 IQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 239
             IQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R RL
Sbjct:   176 IQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR-RL 234

Query:   240 SAASKPSTA 248
             S+  + ST+
Sbjct:   235 SSL-RASTS 242

GO:0042593 "glucose homeostasis" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RP05 RPS6 "40S ribosomal protein S6" [Canis lupus familiaris (taxid:9615)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 140/249 (56%), Positives = 168/249 (67%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct:     1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             FPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE
Sbjct:    61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGE 118

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPK 179
              D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    K GKK  +KAPK
Sbjct:   119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLN-KEGKKPRTKAPK 175

Query:   180 IQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 239
             IQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R RL
Sbjct:   176 IQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR-RL 234

Query:   240 SAASKPSTA 248
             S+  + ST+
Sbjct:   235 SSL-RASTS 242

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62753 RPS6 "40S ribosomal protein S6" [Homo sapiens (taxid:9606)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 140/249 (56%), Positives = 168/249 (67%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct:     1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             FPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE
Sbjct:    61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGE 118

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPK 179
              D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    K GKK  +KAPK
Sbjct:   119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLN-KEGKKPRTKAPK 175

Query:   180 IQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 239
             IQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R RL
Sbjct:   176 IQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR-RL 234

Query:   240 SAASKPSTA 248
             S+  + ST+
Sbjct:   235 SSL-RASTS 242

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IEA

GO:0006364 "rRNA processing" evidence=IMP

GO:0042274 "ribosomal small subunit biogenesis" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0015935 "small ribosomal subunit" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0042593 "glucose homeostasis" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0022627 "cytosolic small ribosomal subunit" evidence=NAS;IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0031929 "TOR signaling cascade" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

RGD|3602 Rps6 "ribosomal protein S6" [Rattus norvegicus (taxid:10116)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 140/249 (56%), Positives = 168/249 (67%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct:     1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             FPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE
Sbjct:    61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGE 118

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPK 179
              D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    K GKK  +KAPK
Sbjct:   119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLN-KEGKKPRTKAPK 175

Query:   180 IQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 239
             IQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R RL
Sbjct:   176 IQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR-RL 234

Query:   240 SAASKPSTA 248
             S+  + ST+
Sbjct:   235 SSL-RASTS 242

GO:0000028 "ribosomal small subunit assembly" evidence=IMP

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISO

GO:0001890 "placenta development" evidence=ISO

GO:0002309 "T cell proliferation involved in immune response" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=IMP;TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=ISO;TAS

GO:0005844 "polysome" evidence=ISO

GO:0006364 "rRNA processing" evidence=ISO;IBA

GO:0006412 "translation" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=ISO

GO:0007067 "mitosis" evidence=ISO

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISO

GO:0007369 "gastrulation" evidence=ISO

GO:0015935 "small ribosomal subunit" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0022605 "oogenesis stage" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0031929 "TOR signaling cascade" evidence=IEA;ISO

GO:0033077 "T cell differentiation in thymus" evidence=ISO

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISO

GO:0042593 "glucose homeostasis" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048821 "erythrocyte development" evidence=ISO

UNIPROTKB|J9NRJ1 RPS6 "40S ribosomal protein S6" [Canis lupus familiaris (taxid:9615)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 140/249 (56%), Positives = 167/249 (67%)

Query:     1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
             MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQG
Sbjct:     1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query:    61 FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
             FPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE
Sbjct:    61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGARKRKSVRG--CIVDANLSVLNLVIVKKGE 118

Query:   121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPK 179
              D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    K GKK  +KAPK
Sbjct:   119 KDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLN-KEGKKPRTKAPK 175

Query:   180 IQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 239
             IQRLVTP  L                      EY KLLA R+KE +E+R E  AK+R RL
Sbjct:   176 IQRLVTPRVLQHKRQRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQTAKRR-RL 234

Query:   240 SAASKPSTA 248
             S+  + ST+
Sbjct:   235 SSL-RASTS 242

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39017	RS6_XENLA	No assigned EC number	0.6473	0.944	0.9477	N/A	no
P47838	RS6_CHICK	No assigned EC number	0.6334	0.98	0.9839	yes	no
Q94624	RS6_MANSE	No assigned EC number	0.5905	0.984	0.9723	N/A	no
P05752	RS6A_SCHPO	No assigned EC number	0.6	0.944	0.9874	yes	no
Q5E995	RS6_BOVIN	No assigned EC number	0.6494	0.98	0.9839	yes	no
Q54UU3	RS6_DICDI	No assigned EC number	0.5726	0.896	0.9491	yes	no
Q95V32	RS6_SPOFR	No assigned EC number	0.5984	0.984	0.9723	N/A	no
P62754	RS6_MOUSE	No assigned EC number	0.6494	0.98	0.9839	yes	no
P62755	RS6_RAT	No assigned EC number	0.6494	0.98	0.9839	yes	no
Q9YGF2	RS6_ONCMY	No assigned EC number	0.6254	0.98	0.9839	N/A	no
P62753	RS6_HUMAN	No assigned EC number	0.6494	0.98	0.9839	yes	no
P0CX37	RS6A_YEAST	No assigned EC number	0.5933	0.944	1.0	yes	no
P51430	RS62_ARATH	No assigned EC number	0.9076	0.996	1.0	yes	no
Q90YR8	RS6_ICTPU	No assigned EC number	0.6597	0.944	0.9477	N/A	no
Q9NE83	RS6_LEIMA	No assigned EC number	0.4545	0.964	0.9678	yes	no
Q9NEN6	RS6_CAEEL	No assigned EC number	0.5752	0.888	0.9024	yes	no
Q6FJH3	RS6_CANGA	No assigned EC number	0.5684	0.944	1.0	yes	no
O01727	RS6_BRAFL	No assigned EC number	0.6106	0.94	0.9631	yes	no
Q4R4K6	RS6_MACFA	No assigned EC number	0.6494	0.98	0.9839	N/A	no
Q9BMX5	RS6_APLCA	No assigned EC number	0.6666	0.904	0.9149	N/A	no
Q74ZK3	RS6_ASHGO	No assigned EC number	0.5477	0.944	1.0	yes	no
P41798	RS6_KLUMA	No assigned EC number	0.5889	0.908	0.9659	N/A	no
Q6C169	RS6_YARLI	No assigned EC number	0.6081	0.864	0.8925	yes	no
Q6BXH8	RS6_DEBHA	No assigned EC number	0.5643	0.944	1.0	yes	no
Q9M3V8	RS6_ASPOF	No assigned EC number	0.916	1.0	0.9960	N/A	no
Q2PQM1	RS6_GLOMM	No assigned EC number	0.6293	0.908	0.9153	N/A	no
P29345	RS6_TOBAC	No assigned EC number	0.8578	0.796	1.0	N/A	no
O48549	RS61_ARATH	No assigned EC number	0.9	0.996	0.996	yes	no
Q6CM04	RS6_KLULA	No assigned EC number	0.5601	0.944	1.0	yes	no
O44012	RS6_LEIIN	No assigned EC number	0.4466	0.964	0.9678	yes	no
P29327	RS6_DROME	No assigned EC number	0.6120	0.908	0.9153	yes	no
Q9C0Z7	RS6B_SCHPO	No assigned EC number	0.5958	0.944	0.9874	yes	no
P0CX38	RS6B_YEAST	No assigned EC number	0.5933	0.944	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_I2492	SubName- Full=Putative uncharacterized protein; (249 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.5793.1	SubName- Full=Putative uncharacterized protein; (250 aa)			•	•	•		•		0.665
	gw1.VIII.2707.1	SubName- Full=Putative uncharacterized protein; (253 aa)			•	•	•		•		0.658
	gw1.70.235.1	SubName- Full=Putative uncharacterized protein; (248 aa)			•	•	•		•		0.647
	gw1.1845.1.1	60S ribosomal protein L4/L1 (RPL4D) (408 aa)			•	•	•		•		0.629
	estExt_Genewise1_v1.C_280409	SubName- Full=Putative uncharacterized protein; (408 aa)			•	•	•		•		0.628
	gw1.XVI.3868.1	SubName- Full=Putative uncharacterized protein; (262 aa)			•	•	•		•		0.620
	estExt_fgenesh4_pm.C_LG_VI0361	40S ribosomal protein S4 (RPS4A) (263 aa)			•	•	•		•		0.616
	gw1.XIII.662.1	SubName- Full=Putative uncharacterized protein; (262 aa)			•	•	•		•		0.615
	eugene3.00150590	40S ribosomal protein S4 (RPS4A) (263 aa)			•	•	•		•		0.615
	estExt_fgenesh4_pm.C_1220043	40S ribosomal protein S4 (RPS4A) (263 aa)			•	•	•		•		0.615

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
PTZ00028	218	PTZ00028, PTZ00028, 40S ribosomal protein S6e; Pro	6e-97
pfam01092	127	pfam01092, Ribosomal_S6e, Ribosomal protein S6e	2e-61
COG2125	120	COG2125, RPS6A, Ribosomal protein S6E (S10) [Trans	1e-43
PRK04290	115	PRK04290, PRK04290, 30S ribosomal protein S6e; Val	2e-26
pfam10186	307	pfam10186, Atg14, UV radiation resistance protein	0.003

>gnl|CDD|185404 PTZ00028, PTZ00028, 40S ribosomal protein S6e; Provisional

 Score =  282 bits (723), Expect = 6e-97
 Identities = 144/225 (64%), Positives = 167/225 (74%), Gaps = 7/225 (3%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK NIANP TG QK +EIDD++KL  FF+KRI  EV GD+LG+EFKGY+FKI GG DKQG
Sbjct: 1   MKLNIANPFTGLQKCIEIDDEKKLLPFFEKRIGAEVPGDSLGDEFKGYIFKISGGNDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPM QGVLT  RVRLL  +G  C+R   RR GE +RKSVRGCIV  DLSVLNLV+VKKG 
Sbjct: 61  FPMMQGVLTNNRVRLLFRKGMKCYR--PRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGP 118

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            ++PGLTD E+PR  GPKRASKIRKLFNLSK DDVRK+V   RR      GK  +KAPKI
Sbjct: 119 QEIPGLTDGERPRRLGPKRASKIRKLFNLSKSDDVRKFV--VRRKI---EGKNKTKAPKI 173

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQR 225
           QRLVTP  LQRKR      K+++ +++ EA EYQKLL     E+R
Sbjct: 174 QRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLLEEYKNEKR 218

Length = 218

>gnl|CDD|110116 pfam01092, Ribosomal_S6e, Ribosomal protein S6e

 Score =  188 bits (480), Expect = 2e-61
 Identities = 90/129 (69%), Positives = 107/129 (82%), Gaps = 2/129 (1%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK N+++P TGCQK +E+DD+ +LR F++KR+ QEV GDA+G+E KGYV +I GG DKQG
Sbjct: 1   MKLNVSDPATGCQKLIEVDDEHRLRVFYEKRMGQEVDGDAVGDELKGYVLRITGGNDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVL P RVRLLL +G  C+R   RRDGER+RKSVRGCIV PDLSVLNLVIVKKGE
Sbjct: 61  FPMKQGVLGPTRVRLLLSKGHSCYR--PRRDGERKRKSVRGCIVDPDLSVLNLVIVKKGE 118

Query: 121 HDLPGLTDT 129
            D+PGLTD 
Sbjct: 119 KDIPGLTDD 127

Length = 127

>gnl|CDD|225036 COG2125, RPS6A, Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]

 Score =  143 bits (362), Expect = 1e-43
 Identities = 59/120 (49%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
            K  I++P TG   + EID+  + R    K+I  EV G  +G EF  Y  KI GG DK G
Sbjct: 4   FKVVISDPKTGRAYQFEIDE-ARARRLIGKKIGDEVDGVIVGLEF-EYKLKITGGSDKDG 61

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPM+  V  P RVR+LL  G P +R   RR GER+RK+VRG I+SPD+  +NLVIV+ GE
Sbjct: 62  FPMRPDVPGPRRVRILL-SGGPGYRP--RRKGERKRKTVRGNIISPDIVQINLVIVEYGE 118

Length = 120

>gnl|CDD|235271 PRK04290, PRK04290, 30S ribosomal protein S6e; Validated

 Score = 98.4 bits (246), Expect = 2e-26
 Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 6/116 (5%)

Query: 2   KFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGF 61
           K  +++P TG   ++EID   +      K+I  E+ G  +G    GY  KI GG DK GF
Sbjct: 5   KVVVSDPKTGKAYQIEIDG-AEANRLIGKKIGDEIDGSIVG--LDGYKLKITGGSDKSGF 61

Query: 62  PMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVK 117
           PM+  V  P R R+LL  G P FR   +  GERRRK+VRG  +S D+  +N  +V+
Sbjct: 62  PMRPDVPGPVRRRILL-SGGPGFR--PKEKGERRRKTVRGNTISDDIVQINAKVVE 114

Length = 115

>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and autophagy-related subunit 14

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 185 TPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLSAAS 243
             L     +  +A KK+R+ + +A  ++ ++ +  + +E+ E    +LA++RS LS+AS
Sbjct: 55  GKLAADLLKLEVARKKERLNQIRARISQLKEEIE-QKRERIEELKRALAQRRSDLSSAS 112

The Atg14 or Apg14 proteins are hydrophilic proteins with a predicted molecular mass of 40.5 kDa, and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole. Subcellular fractionation indicate that Apg14p and Apg6p are peripherally associated with a membrane structure(s). Apg14p was co-immunoprecipitated with Apg6p, suggesting that they form a stable protein complex. These results imply that Apg6/Vps30p has two distinct functions: in the autophagic process and in the vacuolar protein sorting pathway. Apg14p may be a component specifically required for the function of Apg6/Vps30p through the autophagic pathway. There are 17 auto-phagosomal component proteins which are categorized into six functional units, one of which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K complex and the Atg2-Atg18 complex are essential for nucleation, and the specific function of the AS-PI3K apparently is to produce phosphatidylinositol 3-phosphate (PtdIns(3)P) at the pre-autophagosomal structure (PAS). The localisation of this complex at the PAS is controlled by Atg14. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. This effect seems to be mediated through direct interaction of the human Atg14 with Beclin 1 in the human phosphatidylinositol 3-kinase class III complex. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
KOG1646	237	consensus 40S ribosomal protein S6 [Translation, r	100.0
PTZ00028	218	40S ribosomal protein S6e; Provisional	100.0
PF01092	127	Ribosomal_S6e: Ribosomal protein S6e; InterPro: IP	100.0
PRK04290	115	30S ribosomal protein S6e; Validated	100.0
COG2125	120	RPS6A Ribosomal protein S6E (S10) [Translation, ri	100.0

>KOG1646 consensus 40S ribosomal protein S6 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-114  Score=760.72  Aligned_cols=235  Identities=73%  Similarity=1.112  Sum_probs=230.0

Q ss_pred             CeEEeecCCCCeeEEEEecChhhhcccccccccceecCcccCCcccCcEEEEccccCCCCCcccCCCCCCceEEEeeeCC
Q 025591            1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG   80 (250)
Q Consensus         1 MKlnIS~P~tG~qk~iEidde~kl~~f~gKrig~eV~gd~lG~e~kGY~~~ItGGnDkqGFPMkqgVl~~~RvrlLLskG   80 (250)
                      ||||||||+||||++||||||+++++||+|+||+||+||+||+||+||+|+||||||+|||||+|||||++||+|||++|
T Consensus         1 mkln~s~p~~g~qk~~Eidde~klR~fydKrm~qev~~d~lGeE~kGyv~~I~GGndkQGFPMkqGvLt~~RvrlLL~kg   80 (237)
T KOG1646|consen    1 MKLNISYPATGCQKLFEIDDERKLRTFYDKRMGQEVAGDALGEEFKGYVFRITGGNDKQGFPMKQGVLTPGRVRLLLSKG   80 (237)
T ss_pred             CcccccccccccceeeeechHHHHHHHHHHhhhhhhccchhchhhceEEEEEcCCccccCCcccccccccchhhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCcceeeeeeceeecCCcceEEEEEEeeccccCCCCCCCCCCCcCCCCchhhhHhhhCCCCccchhhhhh
Q 025591           81 TPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVN  160 (250)
Q Consensus        81 ~~gyRp~~rr~GERkRKSVRGciV~~~is~LNlvIVkkGek~I~gLTd~~~p~~lgPKRaskIrKlFnLsk~ddv~kyV~  160 (250)
                      ||||||  ||+||||||||||||||+|+|+||||||++||+|||||||+++|++|||||||+||||||||+||||++|| 
T Consensus        81 ~scyRp--Rr~GeRkRKSVRGcIV~anlsvLnLvIvKkGekdipGLTdt~~P~rlGPkRaskIrKlfnLskEddvr~~v-  157 (237)
T KOG1646|consen   81 HSCYRP--RRTGERKRKSVRGCIVSANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASKIRKLFNLSKEDDVRQYV-  157 (237)
T ss_pred             cccccc--ccccccccccccceeecccceeeeeeEeccCcccCCCccccccccccCchhhHHHHHHhCCCccccceeeE-
Confidence            999999  99999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccCC-ccccccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 025591          161 TYRRTFTTKTG-KKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRL  239 (250)
Q Consensus       161 ~vrr~l~~k~g-k~~~KaPKIQrLvTp~~lqrk~~~~a~kk~~~~k~keea~eY~klla~r~ke~k~~~~~~~~r~~~s~  239 (250)
                       ||+|++ ++| +|+||||||||||||.+||||++++|+|++++.+++|+||||++||++|++|+++++.+..+++++|+
T Consensus       158 -ir~~~~-~~~~k~~tkaPKIqrlvtp~~lqrk~~~~alkk~~~~k~re~aaey~kLLakr~kE~k~kr~e~~~rr~ss~  235 (237)
T KOG1646|consen  158 -IRRPLT-KEGKKPKTKAPKIQRLVTPRRLQRKRQRIALKKKQIKKNREEAAEYAKLLAKRLKEAKEKRFEVKRRRASSL  235 (237)
T ss_pred             -Eecccc-ccCCCccccCcchhhccchHHHHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence             999999 566 99999999999999999999999999999999999999999999999999999999988777777775


Q ss_pred             c
Q 025591          240 S  240 (250)
Q Consensus       240 ~  240 (250)
                      +
T Consensus       236 ~  236 (237)
T KOG1646|consen  236 R  236 (237)
T ss_pred             c
Confidence            4

>PTZ00028 40S ribosomal protein S6e; Provisional

Probab=100.00  E-value=3.9e-105  Score=704.90  Aligned_cols=217  Identities=66%  Similarity=1.023  Sum_probs=213.1

Q ss_pred             CeEEeecCCCCeeEEEEecChhhhcccccccccceecCcccCCcccCcEEEEccccCCCCCcccCCCCCCceEEEeeeCC
Q 025591            1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG   80 (250)
Q Consensus         1 MKlnIS~P~tG~qk~iEidde~kl~~f~gKrig~eV~gd~lG~e~kGY~~~ItGGnDkqGFPMkqgVl~~~RvrlLLskG   80 (250)
                      ||||||||+||+||+||||||++++.|||++||+||||++||+||+||+|+||||||+|||||+|||+|++||+|||++|
T Consensus         1 MKlnIsdP~tG~qk~iEidde~~l~~f~gkrIG~EVdg~~lG~e~kGY~lkITGGsDkqGfPMkqgV~~~~RvrlLL~kG   80 (218)
T PTZ00028          1 MKLNIANPFTGLQKCIEIDDEKKLLPFFEKRIGAEVPGDSLGDEFKGYIFKISGGNDKQGFPMMQGVLTNNRVRLLFRKG   80 (218)
T ss_pred             CeEEEecCCCCeeEEEEecCHHHhhhhhcccccceecccccCcccCCcEEEEecccCCCCcccCCCccCCceEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCcceeeeeeceeecCCcceEEEEEEeeccccCCCCCCCCCCCcCCCCchhhhHhhhCCCCccchhhhhh
Q 025591           81 TPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVN  160 (250)
Q Consensus        81 ~~gyRp~~rr~GERkRKSVRGciV~~~is~LNlvIVkkGek~I~gLTd~~~p~~lgPKRaskIrKlFnLsk~ddv~kyV~  160 (250)
                      |+||||  +++||||||||||||||+||||||++||++||++||||||+++|++|||||||+|||||||||+|||++|| 
T Consensus        81 ~~gyrp--rr~GeRkRKsVRGciVs~dis~lNlvIvk~Ge~~i~gLtd~~~prrlgPkraskirklfnlsk~ddvrk~v-  157 (218)
T PTZ00028         81 MKCYRP--RRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERPRRLGPKRASKIRKLFNLSKSDDVRKFV-  157 (218)
T ss_pred             CCCCCc--CCCCcceeeeeeeeeecCCceEEEEEEEecCCccChhhccCcCCccCCCcchhhhHHHhCCCccCChhhce-
Confidence            999999  99999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccCCccccccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025591          161 TYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQ  224 (250)
Q Consensus       161 ~vrr~l~~k~gk~~~KaPKIQrLvTp~~lqrk~~~~a~kk~~~~k~keea~eY~klla~r~ke~  224 (250)
                       ||+++   +||..+|||||||||||.+||||++++++|+++.++++++++||++||++|++|.
T Consensus       158 -irr~~---~gkk~~KapKIQRLiTp~~lqrKr~~~~~k~~r~~~~k~~~~ey~kll~~~~~e~  217 (218)
T PTZ00028        158 -VRRKI---EGKNKTKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLLEEYKNEK  217 (218)
T ss_pred             -ecccc---CCCCCCcCCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence             99999   5766699999999999999999999999999999999999999999999998774

>PF01092 Ribosomal_S6e: Ribosomal protein S6e; InterPro: IPR001377 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=6e-64  Score=413.36  Aligned_cols=127  Identities=69%  Similarity=1.127  Sum_probs=102.2

Q ss_pred             CeEEeecCCCCeeEEEEecChhhhcccccccccceecCcccCCcccCcEEEEccccCCCCCcccCCCCCCceEEEeeeCC
Q 025591            1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG   80 (250)
Q Consensus         1 MKlnIS~P~tG~qk~iEidde~kl~~f~gKrig~eV~gd~lG~e~kGY~~~ItGGnDkqGFPMkqgVl~~~RvrlLLskG   80 (250)
                      ||||||||+||+||+|||||+.++++||||+||+||+|++||+||+||+|+||||||+|||||+|||++++||++||++|
T Consensus         1 mKl~isdP~tG~~~~iei~~~~~~~~f~gkrig~evdg~~lG~e~~Gy~~kItGGsD~~GfPMr~~v~~~~rvr~Ll~~G   80 (127)
T PF01092_consen    1 MKLNISDPKTGKQKQIEIDDERALRPFYGKRIGDEVDGDILGEELKGYKLKITGGSDKQGFPMRQGVLGPGRVRLLLSKG   80 (127)
T ss_dssp             -EEEEEETTTTEEEEEE--SHHHHCCCTT-BTT-EEETCCGTTTSSS-EEEEEEEEECCC-BB-TT---SSEEEEEE-TT
T ss_pred             CEEEEEcCCCCEEEEEEeCchHHhhHhhhcchheeEeeeecCccccccEEEEecccCCCCceeecCCCCcceEEEEEeCC
Confidence            99999999999999999999999989999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCcceeeeeeceeecCCcceEEEEEEeeccccCCCCCCC
Q 025591           81 TPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDT  129 (250)
Q Consensus        81 ~~gyRp~~rr~GERkRKSVRGciV~~~is~LNlvIVkkGek~I~gLTd~  129 (250)
                      ++||||  +++||||||||||||||+||||||++||++||++||||||+
T Consensus        81 ~~gyrp--~r~GeRrRKsVRG~~is~di~qiN~~Iv~~G~k~i~glt~~  127 (127)
T PF01092_consen   81 GPGYRP--RRKGERRRKSVRGNIISADISQINLVIVKKGEKPIPGLTDT  127 (127)
T ss_dssp             BTTB----SSTT--EEEEEE-SC--TTEEEEEEEEEE--SS--HHHHT-
T ss_pred             Cccccc--CcCCeEeeeeeeccEecCCeeeEEEEEEEecCccCccccCC
Confidence            999999  99999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins have been grouped on the basis of sequence similarities. Ribosomal protein S6 is the major substrate of protein kinases in eukaryotic ribosomes [] and may play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZM_Y 2XZN_Y 3U5C_G 3U5G_G 3J16_C.

>PRK04290 30S ribosomal protein S6e; Validated

Probab=100.00  E-value=3.6e-55  Score=356.00  Aligned_cols=112  Identities=42%  Similarity=0.745  Sum_probs=108.4

Q ss_pred             CeEEeecCCCCeeEEEEecChhhhcccccccccceecCcccCCcccCcEEEEccccCCCCCcccCCCCCCceEEEeeeCC
Q 025591            1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG   80 (250)
Q Consensus         1 MKlnIS~P~tG~qk~iEidde~kl~~f~gKrig~eV~gd~lG~e~kGY~~~ItGGnDkqGFPMkqgVl~~~RvrlLLskG   80 (250)
                      ||||||||+||+||+|||||+.. ..|||++|||||||++||+  +||+|+||||||+|||||+|||++++|++|||++|
T Consensus         4 ~Kl~IsdP~tG~~~~~ei~~~~~-~~f~gkriG~evdg~~lG~--~Gy~l~ItGGsDk~GfPM~~~v~~~~r~rlLl~~g   80 (115)
T PRK04290          4 FKVVVSDPKTGKAYQIEIDGAEA-NRLIGKKIGDEIDGSIVGL--DGYKLKITGGSDKSGFPMRPDVPGPVRRRILLSGG   80 (115)
T ss_pred             eEEEEEcCCCCeEEEEEeCcHHH-hhhhccccccEEccceeCC--CCeEEEEecccCCCCccccCCccCCceEEEEecCC
Confidence            89999999999999999999984 5599999999999999997  79999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCcceeeeeeceeecCCcceEEEEEEee
Q 025591           81 TPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKK  118 (250)
Q Consensus        81 ~~gyRp~~rr~GERkRKSVRGciV~~~is~LNlvIVkk  118 (250)
                       +||||  +++||||||||||||||+||+|||++||++
T Consensus        81 -~gyrp--~r~GeRrRKsVRG~~vs~di~qiN~~iv~~  115 (115)
T PRK04290         81 -PGFRP--KEKGERRRKTVRGNTISDDIVQINAKVVEY  115 (115)
T ss_pred             -CCCCc--CCCCcEEEEEEEccEEcCCeeEEEEEEEcC
Confidence             89999  999999999999999999999999999974

>COG2125 RPS6A Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.1e-49  Score=319.60  Aligned_cols=117  Identities=50%  Similarity=0.843  Sum_probs=112.5

Q ss_pred             CeEEeecCCCCeeEEEEecChhhhcccccccccceecCcccCCcccCcEEEEccccCCCCCcccCCCCCCceEEEeeeCC
Q 025591            1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG   80 (250)
Q Consensus         1 MKlnIS~P~tG~qk~iEidde~kl~~f~gKrig~eV~gd~lG~e~kGY~~~ItGGnDkqGFPMkqgVl~~~RvrlLLskG   80 (250)
                      |||+||||.||.||++||+++. ++.|+|++||+||||.++|++|. |+|+||||||++||||++||++++|+++|||+ 
T Consensus         4 ~kvvisdp~~G~~~~~ei~~~~-a~~ligkkIGd~~dG~~vg~~~~-yk~kItGGsD~~GfPMr~dv~g~~r~riLls~-   80 (120)
T COG2125           4 FKVVISDPKTGRAYQFEIDEAR-ARRLIGKKIGDEVDGVIVGLEFE-YKLKITGGSDKDGFPMRPDVPGPRRVRILLSG-   80 (120)
T ss_pred             cEEEEeccCcceeeeeeechhh-hhhhhhheeccccCCcEeccccc-EEEEEeCCcCCCCCcccCCCCCcceEEEEecc-
Confidence            7999999999999999999765 89999999999999999999865 99999999999999999999999999999997 


Q ss_pred             CCcccCCCCCCCcceeeeeeceeecCCcceEEEEEEeecccc
Q 025591           81 TPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHD  122 (250)
Q Consensus        81 ~~gyRp~~rr~GERkRKSVRGciV~~~is~LNlvIVkkGek~  122 (250)
                      ++||||  +++|||||||||||||++||+|||++||++|+++
T Consensus        81 ~~GyrP--~~~GeRrRKtVRG~~Is~dI~QiN~~Iv~~ge~~  120 (120)
T COG2125          81 GPGYRP--RRKGERKRKTVRGNIISPDIVQINLVIVEYGEKP  120 (120)
T ss_pred             CCCcCC--CCCCceeeeeecccccchhheeeEEEEEecCCCC
Confidence            689999  9999999999999999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	250
3u5c_G	236	The Structure Of The Eukaryotic Ribosome At 3.0 A R		3e-57
2xzm_Y	293	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-51
3zey_3	250	High-resolution Cryo-electron Microscopy Structure		3e-41
3j20_G	125	Promiscuous Behavior Of Proteins In Archaeal Riboso		9e-06

>pdb|3U5C|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 236

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 122/241 (50%), Positives = 146/241 (60%), Gaps = 5/241 (2%)
Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK NI+ P  G QK  EIDD+ ++R FFDKRI QEV G+A+G+EFKGYVFKI GG DKQG
Sbjct: 1   MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQG 60
Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVL P R++LLL +   C+                  IV PDL+VL LVIVKKGE
Sbjct: 61  FPMKQGVLLPTRIKLLLTKNVSCY--RPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGE 118
Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V    R   TK  K  +KAPKI
Sbjct: 119 QELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVI---RREVTKGEKTYTKAPKI 175
Query: 181 QRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTP  L                      EY +LLA RL E++  ++E   ++ S L 
Sbjct: 176 QRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLK 235
Query: 241 A 241
           A
Sbjct: 236 A 236

>pdb|2XZM|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 293

Iteration: 1
 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/228 (50%), Positives = 134/228 (58%), Gaps = 8/228 (3%)
Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNI+ P TG QK +EIDDD+K   F DK++ QEV GD LG+EFKGYVFKI GG DK G
Sbjct: 1   MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGE 120
           FPMKQGV+  GRVRLLL  G  CF                 CIV PD+ VL L IVKKG 
Sbjct: 61  FPMKQGVMVRGRVRLLLSEGHSCF--TSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGV 118
Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDD---VRKYVNTYRRTFTTKTGKKVSKA 177
            ++ GLT    PR  GPKRA+ I+KLF L KEDD   ++K V   RRTF T  GK  +K 
Sbjct: 119 AEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSV--IRRTFKTAKGKDRTKC 176
Query: 178 PKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQR 225
           PKIQRL+TP  +                      EY+K L +  K+QR
Sbjct: 177 PKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFL-SEWKKQR 223

>pdb|3ZEY|3 Chain 3, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 250

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/186 (47%), Positives = 110/186 (59%), Gaps = 3/186 (1%)
Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQ 59
           MK N+A P  G  K++E+ D+   R    D R+  EV G   GE F+GY FK+ GG DK+
Sbjct: 1   MKLNVAYPRNGTVKQVEVTDEVLRRVNLGDYRLGNEVDGAIFGEAFRGYTFKLRGGSDKE 60
Query: 60  GFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKG 119
           GFPM QGV+ P RV LL+ RG   F                 CI+  D++VLN+ + K G
Sbjct: 61  GFPMVQGVMAPSRVSLLVKRGAVGFNTFRGYQGERRRKSLRGCILGSDIAVLNVTVEKVG 120
Query: 120 EHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPK 179
           E  + G+TD   PR  GPKRA+KIRKLFNL + DDVRKYV   RR  T +  K   KAPK
Sbjct: 121 EQPIEGVTDVSVPRRLGPKRANKIRKLFNLGRTDDVRKYV--IRRKVTKEGKKDRFKAPK 178
Query: 180 IQRLVT 185
           IQRL+T
Sbjct: 179 IQRLIT 184

>pdb|3J20|G Chain G, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 125

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDAL--------GEEFKGYV-FK 51
           K  I++P +G  K++EI   +       KRI  ++    L        G+EF   V  +
Sbjct: 4  FKLVISDPKSGIAKQVEITGAE-TEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVKLE 62
Query: 52 IMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF 84
          I GG DK GFPM+  +  P RVR+LL +G P F
Sbjct: 63 IRGGTDKDGFPMRPDIHGPRRVRVLLSKG-PGF 94
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
3u5c_G	236	RP9, S10, YS4, 40S ribosomal protein S6-A; transla	1e-85
2xzm_Y	293	RPS6E; ribosome, translation; 3.93A {Tetrahymena t	6e-78
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-04

>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3j16_C 3u5g_G Length = 236

 Score =  253 bits (648), Expect = 1e-85
 Identities = 143/241 (59%), Positives = 171/241 (70%), Gaps = 5/241 (2%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MK NI+ P  G QK  EIDD+ ++R FFDKRI QEV G+A+G+EFKGYVFKI GG DKQG
Sbjct: 1   MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGVL P R++LLL +   C+R   RRDGER+RKSVRG IV PDL+VL LVIVKKGE
Sbjct: 61  FPMKQGVLLPTRIKLLLTKNVSCYR--PRRDGERKRKSVRGAIVGPDLAVLALVIVKKGE 118

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI 180
            +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V    R   TK  K  +KAPKI
Sbjct: 119 QELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYTKAPKI 175

Query: 181 QRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLS 240
           QRLVTP  LQRKR + A K +     +  AAEY +LLA RL E++  ++E   ++ S L 
Sbjct: 176 QRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLK 235

Query: 241 A 241
           A
Sbjct: 236 A 236

>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Y Length = 293

 Score =  236 bits (602), Expect = 6e-78
 Identities = 131/250 (52%), Positives = 155/250 (62%), Gaps = 3/250 (1%)

Query: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
           MKFNI+ P TG QK +EIDDD+K   F DK++ QEV GD LG+EFKGYVFKI GG DK G
Sbjct: 1   MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
           FPMKQGV+  GRVRLLL  G  CF    RR G R+RKSVRGCIV PD+ VL L IVKKG 
Sbjct: 61  FPMKQGVMVRGRVRLLLSEGHSCFT--SRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGV 118

Query: 121 HDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYV-NTYRRTFTTKTGKKVSKAPK 179
            ++ GLT    PR  GPKRA+ I+KLF L KEDD      +  RRTF T  GK  +K PK
Sbjct: 119 AEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKDRTKCPK 178

Query: 180 IQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRL 239
           IQRL+TP  + RK+   AEK QR  K  A   EY+K L+   K++  +   + A      
Sbjct: 179 IQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAP 238

Query: 240 SAASKPSTAA 249
                P    
Sbjct: 239 KKVEAPKKVD 248

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 38.2 bits (88), Expect = 8e-04
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 190 QRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLSAASK 244
           + +R R+ E        + E  E  K     L+E  +R+SE + K +     A K
Sbjct: 92  EEQRKRLQELDAASKVMEQEWREKAK---KDLEEWNQRQSEQVEKNKINNRIADK 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
3u5c_G	236	RP9, S10, YS4, 40S ribosomal protein S6-A; transla	100.0
2xzm_Y	293	RPS6E; ribosome, translation; 3.93A {Tetrahymena t	100.0
3j20_G	125	30S ribosomal protein S6E; archaea, archaeal, KINK	100.0

>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3j16_C 3u5g_G

Probab=100.00  E-value=3.5e-115  Score=775.11  Aligned_cols=233  Identities=61%  Similarity=0.976  Sum_probs=222.5

Q ss_pred             CeEEeecCCCCeeEEEEecChhhhcccccccccceecCcccCCcccCcEEEEccccCCCCCcccCCCCCCceEEEeeeCC
Q 025591            1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG   80 (250)
Q Consensus         1 MKlnIS~P~tG~qk~iEidde~kl~~f~gKrig~eV~gd~lG~e~kGY~~~ItGGnDkqGFPMkqgVl~~~RvrlLLskG   80 (250)
                      ||||||||+|||||+||||||++|++|||++||+||+||+||+||+||+|+||||||+|||||+|||+|++||+||||+|
T Consensus         1 mKlnIS~P~tG~qk~iEvdde~kl~~f~gKrig~EV~gd~lG~e~kGY~~kItGGnDkqGFPMkqgVl~~~rvrlLLskG   80 (236)
T 3u5c_G            1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKN   80 (236)
T ss_dssp             CEEEEEETTTTEEEEEECCCHHHHGGGTTCBTTCEEESGGGCSSSSSCEEEEEEEEEGGGCBBCTTCCCSSEEEEEECSS
T ss_pred             CeEEEEcCCCceEEEEEeCChHHhhhhhcccccceechhccCcccCCcEEEEecccCCCCccccCCcCCCceEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCcceeeeeeceeecCCcceEEEEEEeeccccCCCCCCCCCCCcCCCCchhhhHhhhCCCCccchhhhhh
Q 025591           81 TPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVN  160 (250)
Q Consensus        81 ~~gyRp~~rr~GERkRKSVRGciV~~~is~LNlvIVkkGek~I~gLTd~~~p~~lgPKRaskIrKlFnLsk~ddv~kyV~  160 (250)
                      |+||||  +++||||||||||||||+||||||++||++||+|||||||+|+|++|||||||+|||||||||+||||+|| 
T Consensus        81 ~~~yrp--rr~GERkRKsVRGciV~~~is~lNlvIVkkGek~IpgLtd~~~p~~lgPKRas~irklfnlsk~ddVr~yv-  157 (236)
T 3u5c_G           81 VSCYRP--RRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV-  157 (236)
T ss_dssp             BTTBCC--SSTTCCEEEEEECSBCCTTEEEEEEEEEECCSSCCHHHHTCCCCCSCCCCBHHHHHHHHTCTTTSCSSSSS-
T ss_pred             CCccCC--CCCCceeeeeeeeeEecCCceeEEEEEEecCCccCccccCcccccccCCchhhhhHHHhCCCcccchhhee-
Confidence            999999  99999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccCC-ccccccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 025591          161 TYRRTFTTKTG-KKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRL  239 (250)
Q Consensus       161 ~vrr~l~~k~g-k~~~KaPKIQrLvTp~~lqrk~~~~a~kk~~~~k~keea~eY~klla~r~ke~k~~~~~~~~r~~~s~  239 (250)
                       ||+||+  +| |+++|||||||||||++||||++++|+|++++++++|||+||++|||+||+|+++++++..+++++|+
T Consensus       158 -vrr~l~--~gkk~~~kapKIQrlvtp~~lqrk~~~~a~kk~r~~k~keea~eY~klla~r~ke~k~~~~~~~~~r~~~~  234 (236)
T 3u5c_G          158 -IRREVT--KGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSL  234 (236)
T ss_dssp             -CCEEEE--CSSCEEEECCCCBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             -eeeecc--cCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             999998  66 99999999999999999999999999999999999999999999999999999999988544444444

>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Y

Probab=100.00  E-value=3.4e-107  Score=739.03  Aligned_cols=225  Identities=57%  Similarity=0.917  Sum_probs=221.9

Q ss_pred             CeEEeecCCCCeeEEEEecChhhhcccccccccceecCcccCCcccCcEEEEccccCCCCCcccCCCCCCceEEEeeeCC
Q 025591            1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG   80 (250)
Q Consensus         1 MKlnIS~P~tG~qk~iEidde~kl~~f~gKrig~eV~gd~lG~e~kGY~~~ItGGnDkqGFPMkqgVl~~~RvrlLLskG   80 (250)
                      ||||||||+||+||+|||||+++++.|||++||+||+||+||+||+||+|+||||||+|||||+|||+|++||+|||++|
T Consensus         1 mKLnISdP~tG~qk~iEIdde~klr~f~gKrIG~EVdgd~LGeE~kGYvlkITGGnDkqGFPMkqgVl~~~RvrLLLskG   80 (293)
T 2xzm_Y            1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDGFPMKQGVMVRGRVRLLLSEG   80 (293)
T ss_dssp             CEEEEEETTTTEEEEEECCSHHHHTTTTTCCTTCEEETTSCTTTCSSCEEEEEEEEETTSCBBCTTCCCSSEEEEEECTT
T ss_pred             CeEEEecCCCceEEEEEeccHHHHHHHhhccccceEcccccccccCCcEEEEecccCCCCccccCCccCCceEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCcceeeeeeceeecCCcceEEEEEEeeccccCCCCCCCCCCCcCCCCchhhhHhhhCCCCccc---hhh
Q 025591           81 TPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDD---VRK  157 (250)
Q Consensus        81 ~~gyRp~~rr~GERkRKSVRGciV~~~is~LNlvIVkkGek~I~gLTd~~~p~~lgPKRaskIrKlFnLsk~dd---v~k  157 (250)
                      |+||||  +|+||||||||||||||+|||||||+||++||++||||||+++|++|||||||+||||||||++||   ||+
T Consensus        81 ~sgYRP--rr~GERKRKSVRGciVs~disqLNlvIVkkGek~IpgLTD~~~PrrlGPKRAskIRKlFnLsKeDD~~~Vrk  158 (293)
T 2xzm_Y           81 HSCFTS--RRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKK  158 (293)
T ss_dssp             CSSCCC--SSSCCCEEEEEECSSCCTTEEEEEEEEEECCSSCCHHHHTCCCCCCCCCCSHHHHHHHHCCCTTCCHHHHHH
T ss_pred             CCCCCC--CCCCceeeeeeeeeeecCCceeEEEEEEecCCccCccccCCcCCCCCCCchhhhhHHHhCCCcccchhhhhh
Confidence            999999  999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             hhhhhcccccccCC-ccccccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025591          158 YVNTYRRTFTTKTG-KKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSE  230 (250)
Q Consensus       158 yV~~vrr~l~~k~g-k~~~KaPKIQrLvTp~~lqrk~~~~a~kk~~~~k~keea~eY~klla~r~ke~k~~~~~  230 (250)
                      ||  ||++++ ++| |+++|+|||||||||.+||||++++++|+++++++++|++||++||++|++|+++++++
T Consensus       159 yV--irr~~~-kegkk~~~KaPKIQRLVTp~~lqrKr~~~a~Kk~r~~k~keea~eY~klla~r~~e~k~~~~~  229 (293)
T 2xzm_Y          159 SV--IRRTFK-TAKGKDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHA  229 (293)
T ss_dssp             TS--CCEEEE-CTTSCEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             hh--eecccc-ccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99  999998 888 88999999999999999999999999999999999999999999999999999998755

>3j20_G 30S ribosomal protein S6E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.6e-59  Score=383.55  Aligned_cols=112  Identities=39%  Similarity=0.756  Sum_probs=110.2

Q ss_pred             CeEEeecCCCCeeEEEEecChhhhcccccccccceecCcccCC--------cc-cCcEEEEccccCCCCCcccCCCCCCc
Q 025591            1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGE--------EF-KGYVFKIMGGCDKQGFPMKQGVLTPG   71 (250)
Q Consensus         1 MKlnIS~P~tG~qk~iEidde~kl~~f~gKrig~eV~gd~lG~--------e~-kGY~~~ItGGnDkqGFPMkqgVl~~~   71 (250)
                      ||||||||+|||||+||||||. +++||||+||+||+|++||+        || +||+|+||||||+|||||+|||+||+
T Consensus         4 ~Kl~Is~P~tG~qk~iEidde~-~~~f~gkrig~ev~g~~lG~~~~~~~~~e~~kGy~~~ItGG~DkqGFPMkqgV~~~~   82 (125)
T 3j20_G            4 FKLVISDPKSGIAKQVEITGAE-TEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVKLEIRGGTDKDGFPMRPDIHGPR   82 (125)
T ss_dssp             EEEEEEETTTTEEEEEEECSTT-GGGTTTCCTTCEECSTTTCSSSCSSSSSCSCSCCCEEEEEEEETTCCBBCTTCCSSS
T ss_pred             eEEEEEcCCCCEEEEEEcCchh-hhhhccccceeEEeeeecCcccccccccccCCCcEEEEccCcCCCCccccCCcCCCc
Confidence            8999999999999999999995 89999999999999999999        99 99999999999999999999999999


Q ss_pred             eEEEeeeCCCCcccCCCCCCCcceeeeeeceeecCCcceEEEEEE
Q 025591           72 RVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIV  116 (250)
Q Consensus        72 RvrlLLskG~~gyRp~~rr~GERkRKSVRGciV~~~is~LNlvIV  116 (250)
                      ||+||||+| +||||  +|+||||||||||||||+||||||++||
T Consensus        83 rvrlLLskG-~gyrp--rr~GeRkRKsVRG~~V~~~i~~lNlviv  124 (125)
T 3j20_G           83 RVRVLLSKG-PGFRP--KEKGERRKKTVRGNTISPEIVQVNVKLV  124 (125)
T ss_dssp             EEEEECCSS-CSSCC--CCSSCCCEEEEECSSCCTTEEEEEEEEC
T ss_pred             eEEEEecCC-CccCC--CCCCcEeeEEeeceEEcCCeEEEEEEEe
Confidence            999999999 99999  9999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00