Citrus Sinensis ID: 025631

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MDEDEMEELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTLPRNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHLRKLRDFNVSNWF
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccccccccccccccEEEEEEccEEEEcccccccEEEEEcccccccEEEEEcccEEEEccccccccccccEEEEcccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHEEEEccccccccccccEEEccEEEEEEccccEEEEEEEEEEEcccccccccEEEEEEcccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccccccccccccccccEEEEEcccEEEEccccccEEEEEEEcHHHHEEEEEEcccEEEEcccccccccccHHEEEcccccccEEEccHHccccccccEEEccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEHcEEEEEEccccEEEEEEEEEEEcccccccccEEEEEccccEEEEEcccccccccHHEEHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MDEDEMeeldnkkdydveydplvaggdeditmvdsksfvytqgwdsetvvdyridedefhkislmecdffirkppdpdndvydfremyvtppdtdiyaipkvlapmpqkyircavsdygcynvteppidaprdpmykseREIHKVFLVKHyrnrrlgdpefvlDFEEIYVIDSKTKSITRAKVLVTlprnrdrksdllivrdngnsfkiIHASrkedattviekEEWVKTRADMERHLRKLRdfnvsnwf
Flexible Loop (DISEMBL)
mdedemeeldnkkdydveydplvaggdeditmVDSKSFvytqgwdseTVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFlvkhyrnrrlgdpefvlDFEEIyvidsktksitrakvlvtlprnrdrksdllivrdngnsfkiihasrkedattviekeewvktRADMErhlrklrdfnvsnwf
Low Complexity Region (SEG)
MDEDEMEELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTLPRNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHLRKLRDFNVSNWF
Disordered region (IsUnstruct)
****************VEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPID******YKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTLPRNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKT********************
Disordered Region (DISOPRED)
**********NKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTLPR*RDRKSDLLIVRDNGNSFKIIHASRKED*TTVI**************HLRKLRDFNVSNWF
Disordered Region (DISEMBL)
**********NKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTLPRNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHLRKLRDFNVSNWF
Disordered Region (DISPRO)
*****MEELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTLPRNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHLRKLRDFNVSNWF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEDEMEELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTLPRNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHLRKLRDFNVSNWF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
317106688	332	JMS09K11.8 [Jatropha curcas]	1.0	0.753	0.841	1e-121
255558568	327	conserved hypothetical protein [Ricinus	0.96	0.733	0.823	1e-115
449500699	337	PREDICTED: uncharacterized protein LOC10	0.96	0.712	0.793	1e-114
297850594	328	hypothetical protein ARALYDRAFT_472396 [	1.0	0.762	0.787	1e-114
225459665	333	PREDICTED: uncharacterized protein LOC10	0.96	0.720	0.825	1e-114
224063005	325	predicted protein [Populus trichocarpa]	1.0	0.769	0.806	1e-112
18395008	328	plastid transcriptionally active 6 [Arab	1.0	0.762	0.779	1e-112
356510055	328	PREDICTED: uncharacterized protein LOC10	0.968	0.737	0.766	1e-109
302141763	221	unnamed protein product [Vitis vinifera]	0.876	0.990	0.855	1e-107
356515939	329	PREDICTED: uncharacterized protein LOC10	0.968	0.735	0.753	1e-105

>gi|317106688|dbj|BAJ53190.1| JMS09K11.8 [Jatropha curcas]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/258 (84%), Positives = 237/258 (91%), Gaps = 8/258 (3%)

Query: 1   MDEDEMEELDNKKDYDVEYDP--LVA----GGDEDITMVDSKSFVYTQGWDSETVVDYRI 54
           MDE+E EE+DNKKDYD++YDP  +VA    GGDEDI MV SKSFV TQGWDSE +VDYRI
Sbjct: 75  MDEEEAEEVDNKKDYDLDYDPSAVVAAANVGGDEDIAMVISKSFVSTQGWDSEKIVDYRI 134

Query: 55  DEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCA 114
           DE+EFHKISL++CDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCA
Sbjct: 135 DEEEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCA 194

Query: 115 VSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSK 174
           +SDYG YNVTEPPIDAPRDP+YKSEREI KVFL KHYRNRR GDPEFVLDFEEIYVIDSK
Sbjct: 195 MSDYGRYNVTEPPIDAPRDPLYKSEREILKVFLTKHYRNRRFGDPEFVLDFEEIYVIDSK 254

Query: 175 TKSITRAKVLVTLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRA 232
           TKSITRAKV+VT+P  RNRDRKSDLL++RDNGN+FKIIHAS K+D TTVIE+EEW KTR 
Sbjct: 255 TKSITRAKVVVTVPGGRNRDRKSDLLVIRDNGNTFKIIHASEKDDPTTVIEREEWAKTRQ 314

Query: 233 DMERHLRKLRDFNVSNWF 250
           +MERHLRKLRDF+VSNWF
Sbjct: 315 EMERHLRKLRDFSVSNWF 332

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558568|ref|XP_002520309.1| conserved hypothetical protein [Ricinus communis] gi|223540528|gb|EEF42095.1| conserved hypothetical protein [Ricinus communis]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/244 (82%), Positives = 220/244 (90%), Gaps = 4/244 (1%)

Query: 11  NKKDYDVEYDP--LVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECD 68
           NKKDYD++YDP  + +GGDE I MVDSKSFV TQGWDSE +VDYRIDEDEFHKISL++CD
Sbjct: 84  NKKDYDLDYDPSSVASGGDEVIAMVDSKSFVSTQGWDSEKIVDYRIDEDEFHKISLLDCD 143

Query: 69  FFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPI 128
           FFIRKPPDPDNDVYDFREMYVTPPDTD+YAIP+VLAPMPQKYIRC +SDYG YN TEPPI
Sbjct: 144 FFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPRVLAPMPQKYIRCGMSDYGRYNFTEPPI 203

Query: 129 DAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTLP 188
           DAPRDPMY SE+EI KVFL KHYRNRR GDPEFVLDFEEIYVIDSKTKSITRAKV+VT P
Sbjct: 204 DAPRDPMYSSEKEILKVFLTKHYRNRRFGDPEFVLDFEEIYVIDSKTKSITRAKVVVTAP 263

Query: 189 --RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHLRKLRDFNV 246
             RNRDRKSDLL++RDNG SFKI HAS +ED TTVIE+EEW K+R DME+HL KLRDF+V
Sbjct: 264 GGRNRDRKSDLLVIRDNGTSFKIKHASEREDPTTVIEREEWAKSRQDMEKHLSKLRDFSV 323

Query: 247 SNWF 250
           SNWF
Sbjct: 324 SNWF 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500699|ref|XP_004161171.1| PREDICTED: uncharacterized protein LOC101225304 [Cucumis sativus]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/252 (79%), Positives = 225/252 (89%), Gaps = 12/252 (4%)

Query: 11  NKKDYDVEYDPLV----------AGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFH 60
           NKKD+D+EYDPL             GDE+I++V SKSFV TQGWDSE +VDYRI+E+EFH
Sbjct: 86  NKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFH 145

Query: 61  KISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGC 120
           KISL+ CDFFIRKPPDPD+DVYDFREMYVTPPDTD+YAIPKVLAPMPQKYIRCA SDYGC
Sbjct: 146 KISLLHCDFFIRKPPDPDSDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGC 205

Query: 121 YNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITR 180
           YNVTEPPID+PRDP+YKSE+E+ KVFL KH+RNRRL DPEFVLDFEEIYVIDSKTKSITR
Sbjct: 206 YNVTEPPIDSPRDPLYKSEKEVLKVFLTKHFRNRRLRDPEFVLDFEEIYVIDSKTKSITR 265

Query: 181 AKVLVTLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHL 238
           AKVLVT+P  R+RDR+SDLL+VRDNGNSFKIIH+S ++D TTVIEKEEW KTR DMERHL
Sbjct: 266 AKVLVTVPGGRDRDRRSDLLVVRDNGNSFKIIHSSERDDPTTVIEKEEWTKTRQDMERHL 325

Query: 239 RKLRDFNVSNWF 250
           RKLRDF++SNWF
Sbjct: 326 RKLRDFSISNWF 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850594|ref|XP_002893178.1| hypothetical protein ARALYDRAFT_472396 [Arabidopsis lyrata subsp. lyrata] gi|297339020|gb|EFH69437.1| hypothetical protein ARALYDRAFT_472396 [Arabidopsis lyrata subsp. lyrata]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/259 (78%), Positives = 224/259 (86%), Gaps = 9/259 (3%)

Query: 1   MDEDEMEELDNKKDYDVEYDPLVAGGDEDIT-------MVDSKSFVYTQGWDSETVVDYR 53
           MD++E+EE+DNKKDYDVEYDPL A               V SKSF+ TQGWDSE VVDYR
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAMAAAGGGGDGDIAFVQSKSFISTQGWDSEMVVDYR 129

Query: 54  IDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRC 113
           I+EDEFHKISLM+CDFFIRKPPDPDNDVYDFREMYVTPPDTDIY+IP+VLAPMPQKYIRC
Sbjct: 130 INEDEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRC 189

Query: 114 AVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDS 173
           A+SDYGCYNVTEPPIDAPRDP+YKSEREI KVFL KHYRNRR  DPEFVLD EEIYVIDS
Sbjct: 190 AMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDS 249

Query: 174 KTKSITRAKVLVTLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTR 231
           KTKSITRA+VLVT+P  R RDRK DLL++RDNG SFKIIH   ++D TTVIE+EEW KTR
Sbjct: 250 KTKSITRARVLVTVPGGRKRDRKDDLLVIRDNGTSFKIIHVGERDDPTTVIEREEWSKTR 309

Query: 232 ADMERHLRKLRDFNVSNWF 250
            DME+HLRKLRDF+VSNWF
Sbjct: 310 EDMEKHLRKLRDFSVSNWF 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459665|ref|XP_002284617.1| PREDICTED: uncharacterized protein LOC100250482 [Vitis vinifera]

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/247 (82%), Positives = 220/247 (89%), Gaps = 7/247 (2%)

Query: 11  NKKDYDVEYDPLVA-----GGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLM 65
           NKKDYDVEYDPL A        +DI MV SKSFV  QGWDSE VVDYRI+EDEFHKISL 
Sbjct: 87  NKKDYDVEYDPLAAAAAAASVSDDIAMVQSKSFVSIQGWDSEMVVDYRINEDEFHKISLF 146

Query: 66  ECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTE 125
           +CDFFIRKPPDPDNDVYDFREMYVTPPDTD+YAIP+VLAPMPQKYIRCA SDYGCY+VTE
Sbjct: 147 DCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPRVLAPMPQKYIRCAKSDYGCYDVTE 206

Query: 126 PPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV 185
           PPIDAPRDP+YKSERE+ KVFL KHYRNRRL DPEFVLDFEEIYVIDSKTKSITRAKV+V
Sbjct: 207 PPIDAPRDPLYKSEREVWKVFLTKHYRNRRLADPEFVLDFEEIYVIDSKTKSITRAKVVV 266

Query: 186 TLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHLRKLRD 243
           T P  RNRDRKSDLL++RD GNSFKIIHAS K+D TTVIE+EEW K+R DMERHLRKLRD
Sbjct: 267 TAPGGRNRDRKSDLLVIRDKGNSFKIIHASEKDDPTTVIEREEWTKSREDMERHLRKLRD 326

Query: 244 FNVSNWF 250
           F++SNWF
Sbjct: 327 FSISNWF 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063005|ref|XP_002300963.1| predicted protein [Populus trichocarpa] gi|222842689|gb|EEE80236.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/258 (80%), Positives = 234/258 (90%), Gaps = 8/258 (3%)

Query: 1   MDEDEMEELDNKKDYDVEYDPLVAGG------DEDITMVDSKSFVYTQGWDSETVVDYRI 54
           MDE+E+EELDNKKDYDVEY+PL A        DE+I+MV+SKSFV+TQGWDSE +VDYRI
Sbjct: 68  MDEEEVEELDNKKDYDVEYEPLSASAIAVGNEDEEISMVNSKSFVHTQGWDSEKIVDYRI 127

Query: 55  DEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCA 114
           +E+EFHKISL +CDFFIRKPPDPD+DVYDFREMYVTPPDTD+YAIPKVLAPMPQKYIRCA
Sbjct: 128 NEEEFHKISLFDCDFFIRKPPDPDDDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCA 187

Query: 115 VSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSK 174
            +DYG YNVTEPPIDAPRDP YKSEREI KVFL KHYRNRRLGDP+FVLDF+EIYVIDSK
Sbjct: 188 ETDYGGYNVTEPPIDAPRDPFYKSEREIWKVFLFKHYRNRRLGDPDFVLDFDEIYVIDSK 247

Query: 175 TKSITRAKVLVTLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRA 232
           TKSITRAKVLVT+P  RNRDRK+DLL+VRD G SFKIIH+S ++D TT+IEKEEW ++R 
Sbjct: 248 TKSITRAKVLVTVPGGRNRDRKTDLLVVRDKGTSFKIIHSSERDDPTTIIEKEEWARSRQ 307

Query: 233 DMERHLRKLRDFNVSNWF 250
           DMERHLRKLRDF+VSNWF
Sbjct: 308 DMERHLRKLRDFDVSNWF 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395008|ref|NP_564144.1| plastid transcriptionally active 6 [Arabidopsis thaliana] gi|79318316|ref|NP_001031076.1| plastid transcriptionally active 6 [Arabidopsis thaliana] gi|5263310|gb|AAD41412.1|AC007727_1 EST gb|N95925 comes from this gene [Arabidopsis thaliana] gi|11692926|gb|AAG40066.1|AF324715_1 At1g21600 [Arabidopsis thaliana] gi|11908094|gb|AAG41476.1|AF326894_1 unknown protein [Arabidopsis thaliana] gi|17386146|gb|AAL38619.1|AF446886_1 At1g21600/F24J8.10 [Arabidopsis thaliana] gi|15450597|gb|AAK96570.1| At1g21600/F24J8.10 [Arabidopsis thaliana] gi|21280837|gb|AAM44921.1| unknown protein [Arabidopsis thaliana] gi|222423451|dbj|BAH19696.1| AT1G21600 [Arabidopsis thaliana] gi|332192001|gb|AEE30122.1| plastid transcriptionally active 6 [Arabidopsis thaliana] gi|332192002|gb|AEE30123.1| plastid transcriptionally active 6 [Arabidopsis thaliana]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/259 (77%), Positives = 224/259 (86%), Gaps = 9/259 (3%)

Query: 1   MDEDEMEELDNKKDYDVEYDPLVAGGDEDIT-------MVDSKSFVYTQGWDSETVVDYR 53
           MD++E+EE+DNKKDYDVEYDPL A               V SKSF+ TQGWDS+ VVDYR
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGDGDIAFVQSKSFISTQGWDSDMVVDYR 129

Query: 54  IDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRC 113
           I+EDEFHK+SLM+CDFFIRKPPDPDNDVYDFREMYVTPPDTDIY+IP+VLAPMPQKYIRC
Sbjct: 130 INEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRC 189

Query: 114 AVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDS 173
           A+SDYGCYNVTEPPIDAPRDP+YKSEREI KVFL KHYRNRR  DPEFVLD EEIYVIDS
Sbjct: 190 AMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDS 249

Query: 174 KTKSITRAKVLVTLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTR 231
           KTKSITRA+VLVT+P  R RDRK DLL++RDNG SFKIIH   ++D TTVIE+EEW KTR
Sbjct: 250 KTKSITRARVLVTVPGGRKRDRKDDLLVIRDNGTSFKIIHVGERDDPTTVIEREEWTKTR 309

Query: 232 ADMERHLRKLRDFNVSNWF 250
            DME+HLRKLRDF+VSNWF
Sbjct: 310 EDMEKHLRKLRDFSVSNWF 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510055|ref|XP_003523756.1| PREDICTED: uncharacterized protein LOC100782614 [Glycine max]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/253 (76%), Positives = 221/253 (87%), Gaps = 11/253 (4%)

Query: 9   LDNKKDYDVEYDPLVAGG---------DEDITMVDSKSFVYTQGWDSETVVDYRIDEDEF 59
           LDNKKD+D+EYDPLV            D++I  V+SKSFV TQGWDS+TV+DY+I+EDEF
Sbjct: 76  LDNKKDFDIEYDPLVPAAAAAAAASAADDNIAFVESKSFVSTQGWDSDTVLDYKINEDEF 135

Query: 60  HKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYG 119
           HKI L++CDFFIRKPPDPDNDVYDFREMYVTPPDTD+Y+IPKVLAPMPQKYIRCA SDYG
Sbjct: 136 HKICLVDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPKVLAPMPQKYIRCAQSDYG 195

Query: 120 CYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSIT 179
            YNVTEPPIDAPRDP+YK+EREI KV+L KHY+NRR GDPEFVLDFEEIYV+DSKTKSIT
Sbjct: 196 SYNVTEPPIDAPRDPLYKTEREILKVYLTKHYKNRRKGDPEFVLDFEEIYVVDSKTKSIT 255

Query: 180 RAKVLVTLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERH 237
           RAKVLVT P  R RDR+SDLL++ D G+SFKIIHAS KED TTVIEK+EW  +R +MERH
Sbjct: 256 RAKVLVTAPGGRTRDRRSDLLVISDRGSSFKIIHASEKEDPTTVIEKQEWENSREEMERH 315

Query: 238 LRKLRDFNVSNWF 250
           LRKLRDF++SNWF
Sbjct: 316 LRKLRDFSISNWF 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141763|emb|CBI18966.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/221 (85%), Positives = 204/221 (92%), Gaps = 2/221 (0%)

Query: 32  MVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTP 91
           MV SKSFV  QGWDSE VVDYRI+EDEFHKISL +CDFFIRKPPDPDNDVYDFREMYVTP
Sbjct: 1   MVQSKSFVSIQGWDSEMVVDYRINEDEFHKISLFDCDFFIRKPPDPDNDVYDFREMYVTP 60

Query: 92  PDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHY 151
           PDTD+YAIP+VLAPMPQKYIRCA SDYGCY+VTEPPIDAPRDP+YKSERE+ KVFL KHY
Sbjct: 61  PDTDVYAIPRVLAPMPQKYIRCAKSDYGCYDVTEPPIDAPRDPLYKSEREVWKVFLTKHY 120

Query: 152 RNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTLP--RNRDRKSDLLIVRDNGNSFKI 209
           RNRRL DPEFVLDFEEIYVIDSKTKSITRAKV+VT P  RNRDRKSDLL++RD GNSFKI
Sbjct: 121 RNRRLADPEFVLDFEEIYVIDSKTKSITRAKVVVTAPGGRNRDRKSDLLVIRDKGNSFKI 180

Query: 210 IHASRKEDATTVIEKEEWVKTRADMERHLRKLRDFNVSNWF 250
           IHAS K+D TTVIE+EEW K+R DMERHLRKLRDF++SNWF
Sbjct: 181 IHASEKDDPTTVIEREEWTKSREDMERHLRKLRDFSISNWF 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515939|ref|XP_003526654.1| PREDICTED: uncharacterized protein LOC100792016 [Glycine max]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 217/252 (86%), Gaps = 10/252 (3%)

Query: 9   LDNKKDYDVEYDPLVAGGDEDIT--------MVDSKSFVYTQGWDSETVVDYRIDEDEFH 60
           LDNKKD+D+EYDPLV       +        +V+SKSFV TQGW S+TVVDY+I+EDEFH
Sbjct: 78  LDNKKDFDIEYDPLVPAAAAAASAAGDDDIAVVESKSFVSTQGWHSDTVVDYKINEDEFH 137

Query: 61  KISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGC 120
           KI L++CDFFIRKPPDPDNDVYDFREMYVTPPDTD+Y++PKVLAPMPQKYIRCA SDYG 
Sbjct: 138 KICLVDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSVPKVLAPMPQKYIRCAQSDYGS 197

Query: 121 YNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITR 180
           YNVTEPPIDAPRDP+YK+EREI KV+L KHY+NRR GD EFVLDFEEIYVIDSK+KSITR
Sbjct: 198 YNVTEPPIDAPRDPLYKTEREILKVYLTKHYKNRRKGDSEFVLDFEEIYVIDSKSKSITR 257

Query: 181 AKVLVTLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTRADMERHL 238
           AKVLVT P  R RDR+SDLL++ D G+SFKIIHAS KED TTVIEK+EW  +R +MERHL
Sbjct: 258 AKVLVTAPGGRTRDRRSDLLVISDRGSSFKIIHASEKEDPTTVIEKQEWEHSREEMERHL 317

Query: 239 RKLRDFNVSNWF 250
           RKLRDF++SNWF
Sbjct: 318 RKLRDFSISNWF 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2026972	328	PTAC6 "AT1G21600" [Arabidopsis	1.0	0.762	0.799	3.5e-114

TAIR|locus:2026972 PTAC6 "AT1G21600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
 Identities = 207/259 (79%), Positives = 229/259 (88%)

Query:     1 MDEDEMEELDNKKDYDVEYDPLVA-------GGDEDITMVDSKSFVYTQGWDSETVVDYR 53
             MD++E+EE+DNKKDYDVEYDPL A       GGD DI  V SKSF+ TQGWDS+ VVDYR
Sbjct:    70 MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGDGDIAFVQSKSFISTQGWDSDMVVDYR 129

Query:    54 IDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRC 113
             I+EDEFHK+SLM+CDFFIRKPPDPDNDVYDFREMYVTPPDTDIY+IP+VLAPMPQKYIRC
Sbjct:   130 INEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRC 189

Query:   114 AVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDS 173
             A+SDYGCYNVTEPPIDAPRDP+YKSEREI KVFL KHYRNRR  DPEFVLD EEIYVIDS
Sbjct:   190 AMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDS 249

Query:   174 KTKSITRAKVLVTLP--RNRDRKSDLLIVRDNGNSFKIIHASRKEDATTVIEKEEWVKTR 231
             KTKSITRA+VLVT+P  R RDRK DLL++RDNG SFKIIH   ++D TTVIE+EEW KTR
Sbjct:   250 KTKSITRARVLVTVPGGRKRDRKDDLLVIRDNGTSFKIIHVGERDDPTTVIEREEWTKTR 309

Query:   232 ADMERHLRKLRDFNVSNWF 250
              DME+HLRKLRDF+VSNWF
Sbjct:   310 EDMEKHLRKLRDFSVSNWF 328


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       250   0.00080  114 3  11 22  0.46    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  209 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.03u 0.11s 24.14t   Elapsed:  00:00:01
  Total cpu time:  24.03u 0.11s 24.14t   Elapsed:  00:00:01
  Start:  Fri May 10 19:10:56 2013   End:  Fri May 10 19:10:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.1__2350__AT1G21600.2	annotation not avaliable (328 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.4__1488__AT2G34640.1	annotation not avaliable (527 aa)				•			•		0.599
	s2	Plastid ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase-relat [...] (483 aa)				•			•		0.524
	scaffold_501800.1	annotation not avaliable (675 aa)				•			•		0.523
	scaffold_301041.1	annotation not avaliable (337 aa)				•			•		0.511
	fgenesh2_kg.3__387__AT3G04260.1	annotation not avaliable (914 aa)				•			•		0.511
	fgenesh1_pm.C_scaffold_2000087	annotation not avaliable (767 aa)				•			•		0.495
	fgenesh2_kg.7__1610__AT4G26370.1	annotation not avaliable (300 aa)				•					0.428

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
TIGR01848	107	PHA_reg_PhaR polyhydroxyalkanoate synthesis repres	88.88
PF07879	64	PHB_acc_N: PHB/PHA accumulation regulator DNA-bind	88.39

>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR

Probab=88.88  E-value=0.26  Score=40.27  Aligned_cols=34  Identities=47%  Similarity=0.683  Sum_probs=27.4

Q ss_pred             eehhcccccCCCCc------------ceeecceEEEeecCcce-eee
Q 025631          147 LVKHYRNRRLGDPE------------FVLDFEEIYVIDSKTKS-ITR  180 (250)
Q Consensus       147 L~KHYrNrR~~dp~------------FvLdfeeiyViDsktkS-Itr  180 (250)
                      ++|-|-|||+=|++            +|.+=+++-|+|+||+. |||
T Consensus         2 ~IKKY~NRRLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~   48 (107)
T TIGR01848         2 IIKKYPNRRLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTR   48 (107)
T ss_pred             cccccCCCcccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHH
Confidence            68999999999875            67788888888888764 554

Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.

>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators

Probab=88.39  E-value=0.3  Score=36.91  Aligned_cols=34  Identities=50%  Similarity=0.710  Sum_probs=26.5

Q ss_pred             eehhcccccCCCCc------------ceeecceEEEeecCcce-eee
Q 025631          147 LVKHYRNRRLGDPE------------FVLDFEEIYVIDSKTKS-ITR  180 (250)
Q Consensus       147 L~KHYrNrR~~dp~------------FvLdfeeiyViDsktkS-Itr  180 (250)
                      ++|-|-|||+=|++            +|.+=+++-|+|++|+. |||
T Consensus         2 iIKKY~NRRLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~   48 (64)
T PF07879_consen    2 IIKKYPNRRLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITR   48 (64)
T ss_pred             cccccCCCccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHH
Confidence            58999999999875            56777888888888764 444

These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00