Citrus Sinensis ID: 025692


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF
ccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcEEcccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cccccEEEEEcccHcHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
mfigpinvrasrkDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWiwdgclpafpVQLYQAWLLFLYTGLALRENIlringsdirpwwIYHHYCAMLMALVSLTWeikgqpncaqkQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGkakrmdvvwgetagvdgqlWLLCPILFILQGFEAYVGLLLLKTALvgvvpewqVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKmkkskskpef
mfigpinvrasrkdvqlKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIalgkakrmDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMtksrfkakmkkskskpef
MFIGPINVRASRKDVQLKVKEEYNSYRDRTAllfllfpstllilRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTksrfkakmkkskskPEF
***************QLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMT*****************
MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLM******************
MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKS***************
MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAK**********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query249 2.2.26 [Sep-21-2011]
Q54IK2368 Transmembrane protein 120 yes no 0.578 0.391 0.346 2e-21
A6QPF8339 Transmembrane protein 120 yes no 0.895 0.657 0.279 1e-17
A0PK00339 Transmembrane protein 120 yes no 0.907 0.666 0.264 1e-17
Q3TA38339 Transmembrane protein 120 yes no 0.907 0.666 0.260 3e-17
A3KNK1341 Transmembrane protein 120 no no 0.895 0.653 0.295 1e-16
Q9U1M2387 Transmembrane protein 120 yes no 0.887 0.571 0.277 9e-16
Q5FWV6336 Transmembrane protein 120 yes no 0.863 0.639 0.300 3e-15
A1L2R7336 Transmembrane protein 120 N/A no 0.863 0.639 0.300 4e-15
Q1LY80337 Transmembrane protein 120 no no 0.875 0.646 0.261 2e-14
Q6DE21335 Transmembrane protein 120 N/A no 0.895 0.665 0.277 3e-13
>sp|Q54IK2|TM120_DICDI Transmembrane protein 120 homolog OS=Dictyostelium discoideum GN=tmem120 PE=3 SV=1 Back     alignment and function desciption
 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 35/179 (19%)

Query: 1   MFIGPINVRASRKDVQLKVKEEYNSYRDRT-------ALLFLLFPSTLLILRSWIWDGCL 53
           +F+G +NV+  R++ + ++K+EY  ++ +T        +L LL+P +  +  SW      
Sbjct: 131 LFLGQVNVKHMRENEKFRLKQEYEKFKKKTNPQFILFVVLLLLYPQSSFVTTSW------ 184

Query: 54  PAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQP 113
                   Q WLL+ Y  LALRENIL +NGS I+PWWI HHY ++  +L +L + +    
Sbjct: 185 --------QIWLLYYYITLALRENILLVNGSSIKPWWIMHHYLSIAGSLTNLLFPL---- 232

Query: 114 NCAQKQRGVQLFLQ----WAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAG 168
                      FL     ++  QG+  +L NRYQ+ RLY  +A+GKA  +DV  GE+ G
Sbjct: 233 -----SESFSYFLPQVTYFSGCQGLVQILTNRYQQGRLYKLVAMGKANIIDVT-GESEG 285





Dictyostelium discoideum (taxid: 44689)
>sp|A6QPF8|T120B_BOVIN Transmembrane protein 120B OS=Bos taurus GN=TMEM120B PE=2 SV=1 Back     alignment and function description
>sp|A0PK00|T120B_HUMAN Transmembrane protein 120B OS=Homo sapiens GN=TMEM120B PE=2 SV=1 Back     alignment and function description
>sp|Q3TA38|T120B_MOUSE Transmembrane protein 120B OS=Mus musculus GN=Tmem120b PE=2 SV=1 Back     alignment and function description
>sp|A3KNK1|T120A_DANRE Transmembrane protein 120A OS=Danio rerio GN=tmem120a PE=2 SV=1 Back     alignment and function description
>sp|Q9U1M2|TM120_DROME Transmembrane protein 120 homolog OS=Drosophila melanogaster GN=CG32795 PE=1 SV=1 Back     alignment and function description
>sp|Q5FWV6|T120A_XENTR Transmembrane protein 120A OS=Xenopus tropicalis GN=tmem120a PE=2 SV=2 Back     alignment and function description
>sp|A1L2R7|T120A_XENLA Transmembrane protein 120A OS=Xenopus laevis GN=tmem120a PE=2 SV=1 Back     alignment and function description
>sp|Q1LY80|T120B_DANRE Transmembrane protein 120B OS=Danio rerio GN=tmem120b PE=2 SV=1 Back     alignment and function description
>sp|Q6DE21|T12BB_XENLA Transmembrane protein 120B-B OS=Xenopus laevis GN=tmem120b-b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
297742494 361 unnamed protein product [Vitis vinifera] 1.0 0.689 0.939 1e-136
359473999 371 PREDICTED: transmembrane protein 120 hom 0.971 0.652 0.946 1e-133
359806628 354 uncharacterized protein LOC100789483 [Gl 0.987 0.694 0.922 1e-133
356576897 354 PREDICTED: transmembrane protein 120 hom 0.987 0.694 0.918 1e-133
255646863 354 unknown [Glycine max] 0.987 0.694 0.918 1e-133
449456299 365 PREDICTED: transmembrane protein 120 hom 1.0 0.682 0.939 1e-129
224117700 363 predicted protein [Populus trichocarpa] 0.995 0.683 0.895 1e-127
255555863 360 conserved hypothetical protein [Ricinus 1.0 0.691 0.927 1e-126
224056717345 predicted protein [Populus trichocarpa] 0.991 0.715 0.883 1e-126
357445101 361 Transmembrane protein 120 [Medicago trun 0.987 0.681 0.906 1e-124
>gi|297742494|emb|CBI34643.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/249 (93%), Positives = 239/249 (95%)

Query: 1   MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQL 60
           MF+GPINV A+RKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLP FPVQL
Sbjct: 112 MFLGPINVHATRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPTFPVQL 171

Query: 61  YQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQR 120
           YQAWLLFLYTGLALRENILR+NGSDIRPWWIYHHYCAM+MALVSLTWEIKGQPNCAQKQR
Sbjct: 172 YQAWLLFLYTGLALRENILRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQR 231

Query: 121 GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL 180
           GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL
Sbjct: 232 GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL 291

Query: 181 FILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKM 240
           FILQGFEAYVGLLLLKTA VGVV EWQV FCG LLVLMAVGNF NTVQTLM KSRFKAKM
Sbjct: 292 FILQGFEAYVGLLLLKTAFVGVVSEWQVVFCGVLLVLMAVGNFANTVQTLMVKSRFKAKM 351

Query: 241 KKSKSKPEF 249
           K+SKSK E 
Sbjct: 352 KRSKSKQEL 360




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473999|ref|XP_002276903.2| PREDICTED: transmembrane protein 120 homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359806628|ref|NP_001241531.1| uncharacterized protein LOC100789483 [Glycine max] gi|255639685|gb|ACU20136.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356576897|ref|XP_003556566.1| PREDICTED: transmembrane protein 120 homolog [Glycine max] Back     alignment and taxonomy information
>gi|255646863|gb|ACU23902.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449456299|ref|XP_004145887.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] gi|449524416|ref|XP_004169219.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|224117700|ref|XP_002317646.1| predicted protein [Populus trichocarpa] gi|222860711|gb|EEE98258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255555863|ref|XP_002518967.1| conserved hypothetical protein [Ricinus communis] gi|223541954|gb|EEF43500.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224056717|ref|XP_002298988.1| predicted protein [Populus trichocarpa] gi|222846246|gb|EEE83793.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357445101|ref|XP_003592828.1| Transmembrane protein 120 [Medicago truncatula] gi|355481876|gb|AES63079.1| Transmembrane protein 120 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
TAIR|locus:2127701347 AT4G10430 "AT4G10430" [Arabido 0.927 0.665 0.822 1.6e-102
TAIR|locus:2196668347 AT1G33230 "AT1G33230" [Arabido 0.927 0.665 0.805 1.7e-100
DICTYBASE|DDB_G0288699368 tmem120 "TMPIT-like family pro 0.859 0.581 0.324 3.5e-27
ZFIN|ZDB-GENE-050522-49337 tmem120b "transmembrane protei 0.670 0.495 0.306 2.6e-20
UNIPROTKB|A6QPF8339 TMEM120B "Transmembrane protei 0.678 0.498 0.314 7e-20
RGD|1311474343 Tmem120a "transmembrane protei 0.871 0.632 0.306 7.2e-20
UNIPROTKB|Q05B45343 TMEM120A "Transmembrane protei 0.871 0.632 0.306 9.2e-20
UNIPROTKB|Q9BXJ8343 TMEM120A "Transmembrane protei 0.871 0.632 0.306 9.2e-20
MGI|MGI:2686991343 Tmem120a "transmembrane protei 0.871 0.632 0.306 9.2e-20
UNIPROTKB|J9NV54339 TMEM120B "Uncharacterized prot 0.670 0.492 0.312 1.3e-19
TAIR|locus:2127701 AT4G10430 "AT4G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 190/231 (82%), Positives = 200/231 (86%)

Query:     1 MFIGPINVRASRKDVQLKVKEEYNSYRDRTAXXXXXXXXXXXXXRSWIWDGCLPAFPVQL 60
             MF GP+NVRA RKDVQLKVKEEYN YRD+TA             RS+ W GCLPAFPVQL
Sbjct:    98 MFCGPVNVRALRKDVQLKVKEEYNRYRDKTALLFLFFPATLLILRSYYWGGCLPAFPVQL 157

Query:    61 YQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQR 120
             Y+AWLLFLY GLA+RENILR NGSDIRPWW+YHHYCAM MALVSLTWEIKGQPNC QKQR
Sbjct:   158 YEAWLLFLYAGLAMRENILRANGSDIRPWWLYHHYCAMAMALVSLTWEIKGQPNCVQKQR 217

Query:   121 GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL 180
             GV LFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL
Sbjct:   218 GVHLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL 277

Query:   181 FILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLM 231
             FILQ FEAYVGLLLL+  + GVV EWQV  CG LLV+MAVGNFINTV+TLM
Sbjct:   278 FILQVFEAYVGLLLLRKTVTGVVNEWQVMVCGILLVVMAVGNFINTVETLM 328




GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2196668 AT1G33230 "AT1G33230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288699 tmem120 "TMPIT-like family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-49 tmem120b "transmembrane protein 120B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A6QPF8 TMEM120B "Transmembrane protein 120B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1311474 Tmem120a "transmembrane protein 120A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q05B45 TMEM120A "Transmembrane protein 120A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXJ8 TMEM120A "Transmembrane protein 120A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2686991 Tmem120a "transmembrane protein 120A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9NV54 TMEM120B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
pfam07851330 pfam07851, TMPIT, TMPIT-like protein 5e-91
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein Back     alignment and domain information
 Score =  271 bits (694), Expect = 5e-91
 Identities = 79/242 (32%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 1   MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQL 60
           + +G +NV    K  +   K+EY  ++    ++ LL   T L L ++            L
Sbjct: 101 LVLGNVNVTLLSKQAKFAYKDEYEKFKLYLTVILLLLAFTCLFLLNY-------RVLDAL 153

Query: 61  YQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQR 120
           +   L++ Y  L +RE+IL +NGS I+ WW++HHY +  ++ V LTW     P+    Q 
Sbjct: 154 FNFLLVWYYCTLTIRESILIVNGSRIKGWWVFHHYISTALSGVMLTW-----PDGEMYQL 208

Query: 121 GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVW-GETAGVDGQLWLLCPI 179
               FL ++M Q +   LQN YQ   LY   ALG+   MD+   G  + +   L  L P 
Sbjct: 209 FRNQFLYFSMYQSLVQFLQNYYQSGCLYRLRALGERHNMDLTVEGFQSWMWRGLTFLLPF 268

Query: 180 LFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAK 239
           LF  Q F+ Y    L + A      EWQV  CG L +++ +GNF  T+  +  K R +AK
Sbjct: 269 LFFGQFFQLYNAWTLFRLARHPECKEWQVFVCGLLFLVLFLGNFFTTLMVVYQKFRNQAK 328

Query: 240 MK 241
           MK
Sbjct: 329 MK 330


A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. Length = 330

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 249
PF07851330 TMPIT: TMPIT-like protein; InterPro: IPR012926 A n 100.0
KOG4758220 consensus Predicted membrane protein [General func 100.0
KOG4758220 consensus Predicted membrane protein [General func 98.48
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this Back     alignment and domain information
Probab=100.00  E-value=7e-110  Score=772.34  Aligned_cols=228  Identities=36%  Similarity=0.620  Sum_probs=220.1

Q ss_pred             CCcccceeeecchhhhhhhHHhhhhhhhhHHHHHHHHHHHHH-HHHhhhhcCCCCChhhHHHHHHHHHHhHHHHHhhhhh
Q 025692            1 MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLL-ILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENIL   79 (249)
Q Consensus         1 ~iLG~vNvt~l~k~~kf~yKdEYEkFKl~~tii~l~~~~~~l-~~~~~v~d~~f~~l~~q~~~~~LvwyYcTLtiREsIL   79 (249)
                      ++||||||++++|++||+|||||||||+++|+|++++|++|+ ++++|+.|+        +|+|||||||||||||||||
T Consensus       101 liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~d~--------~~~f~lvwyY~tLtiRE~IL  172 (330)
T PF07851_consen  101 LILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVLDQ--------LFNFLLVWYYCTLTIRESIL  172 (330)
T ss_pred             eecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHH--------HHHHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999999999999999766 556787775        77899999999999999999


Q ss_pred             hcCCCCCchhHHHHHHHHHHhhhheeecccCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhHhcCcccc
Q 025692           80 RINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRM  159 (249)
Q Consensus        80 ~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~~~~qFl~fs~~qs~Vq~lQ~~YQrg~LYrl~ALGe~~~M  159 (249)
                      +||||||||||+.|||+||++|||+||||     ||..+|+||+|||.||+|||+||++|||||||||||||||||||+|
T Consensus       173 ~~NGS~Ik~WW~~HHy~s~~~s~v~Ltwp-----~~~~~~~fr~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~~m  247 (330)
T PF07851_consen  173 IVNGSRIKGWWVFHHYISTFLSGVMLTWP-----DGEAYQKFRPQFLLFSLYQSVVQFLQYRYQRGCLYRLRALGKRHNM  247 (330)
T ss_pred             ccCCCcchHHHHHHHHHHHHHHhccccCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCccc
Confidence            99999999999999999999999999995     7889999999999999999999999999999999999999999999


Q ss_pred             cee-ecCccccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCCcchHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 025692          160 DVV-WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKA  238 (249)
Q Consensus       160 Dvt-~g~~~~~~g~LtfLlPfLf~g~~fQlYna~~L~~~s~~~~~~eWQV~~~~llf~il~~GNf~TT~~vv~~K~~~~~  238 (249)
                      ||| +|++|||++||+||+||||+||+||+||||+||+++.+++|+||||+|||++|++||+|||+||++|+++|+|+++
T Consensus       248 dvt~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~ewqv~~~~~~f~~l~~gN~~tt~~v~~~K~~~~~  327 (330)
T PF07851_consen  248 DVTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECREWQVFVCGLLFLILFLGNFFTTLKVVHQKLKKKA  327 (330)
T ss_pred             eeeecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Confidence            999 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh
Q 025692          239 KMK  241 (249)
Q Consensus       239 ~~~  241 (249)
                      |||
T Consensus       328 ~~~  330 (330)
T PF07851_consen  328 KMK  330 (330)
T ss_pred             ccC
Confidence            986



; GO: 0016021 integral to membrane

>KOG4758 consensus Predicted membrane protein [General function prediction only] Back     alignment and domain information
>KOG4758 consensus Predicted membrane protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 67/229 (29%)

Query: 11  SRKDVQLKVKEEYNSYRDRTALLFLL--FPSTLLILR----SWIWDGCLPAFPVQ----- 59
           SR D    +K   +S +     L     + + LL+L     +  W+    AF +      
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN----AFNLSCKILL 270

Query: 60  ---------------LYQAWLLFLYTGLALRE------NILRINGSDIRPWWIYHH--YC 96
                               L      L   E        L     D+    +  +    
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 97  AMLMALVS---LTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIAL 153
           +++   +     TW+     NC +    ++  L           +    + ++++ R+++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN----------VLEPAEYRKMFDRLSV 380

Query: 154 G------KAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLK 196
                      + ++W +    D  +        ++     Y   L+ K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMV--------VVNKLHKY--SLVEK 419


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00